Multiple sequence alignment - TraesCS3D01G301700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G301700 chr3D 100.000 2273 0 0 1 2273 415998564 416000836 0.000000e+00 4198.0
1 TraesCS3D01G301700 chr3D 92.913 903 53 7 856 1756 445803370 445804263 0.000000e+00 1303.0
2 TraesCS3D01G301700 chr3D 95.378 476 19 3 1 474 208499231 208499705 0.000000e+00 754.0
3 TraesCS3D01G301700 chr3D 97.158 387 10 1 472 858 380245603 380245988 0.000000e+00 652.0
4 TraesCS3D01G301700 chr3D 96.623 385 12 1 472 856 54485758 54486141 2.460000e-179 638.0
5 TraesCS3D01G301700 chr7D 92.597 905 57 7 856 1756 411314935 411314037 0.000000e+00 1291.0
6 TraesCS3D01G301700 chr7D 91.750 897 63 4 856 1749 29612066 29612954 0.000000e+00 1236.0
7 TraesCS3D01G301700 chr7D 95.570 474 19 2 1 473 618048063 618048535 0.000000e+00 758.0
8 TraesCS3D01G301700 chr7D 82.293 593 77 13 1703 2272 29612972 29613559 2.620000e-134 488.0
9 TraesCS3D01G301700 chr7D 87.069 232 27 3 1883 2112 411313873 411313643 2.240000e-65 259.0
10 TraesCS3D01G301700 chr7D 97.872 47 0 1 2180 2225 411313368 411313322 1.870000e-11 80.5
11 TraesCS3D01G301700 chr7D 94.118 51 0 2 2174 2221 587994887 587994837 8.710000e-10 75.0
12 TraesCS3D01G301700 chr5D 92.018 902 64 5 856 1754 517099823 517100719 0.000000e+00 1260.0
13 TraesCS3D01G301700 chr5D 91.814 904 66 5 856 1756 522788009 522788907 0.000000e+00 1253.0
14 TraesCS3D01G301700 chr5D 91.823 905 62 9 856 1756 452400678 452399782 0.000000e+00 1251.0
15 TraesCS3D01G301700 chr5D 95.397 478 17 4 1 474 442564527 442565003 0.000000e+00 756.0
16 TraesCS3D01G301700 chr5D 95.368 475 20 2 1 474 4033408 4033881 0.000000e+00 754.0
17 TraesCS3D01G301700 chr5D 95.378 476 19 3 1 474 11478204 11477730 0.000000e+00 754.0
18 TraesCS3D01G301700 chr5D 97.135 384 10 1 474 856 93820004 93819621 0.000000e+00 647.0
19 TraesCS3D01G301700 chr5D 96.891 386 11 1 474 859 447554382 447553998 0.000000e+00 645.0
20 TraesCS3D01G301700 chr5D 82.783 424 54 9 1703 2112 517100733 517101151 5.970000e-96 361.0
21 TraesCS3D01G301700 chr5D 82.118 425 56 10 1703 2112 452399770 452399351 1.670000e-91 346.0
22 TraesCS3D01G301700 chr5D 82.857 105 6 8 2180 2273 452399395 452399292 1.450000e-12 84.2
23 TraesCS3D01G301700 chr2D 91.925 904 62 7 856 1756 314479569 314478674 0.000000e+00 1254.0
24 TraesCS3D01G301700 chr2D 96.170 470 17 1 1 470 184604612 184604144 0.000000e+00 767.0
25 TraesCS3D01G301700 chr2D 95.588 476 18 3 1 474 149016645 149017119 0.000000e+00 760.0
26 TraesCS3D01G301700 chr2D 97.120 382 11 0 474 855 648296554 648296173 0.000000e+00 645.0
27 TraesCS3D01G301700 chr2D 84.340 447 56 9 1671 2112 314478693 314478256 2.090000e-115 425.0
28 TraesCS3D01G301700 chr2D 79.696 527 78 17 1678 2179 50977049 50976527 9.990000e-94 353.0
29 TraesCS3D01G301700 chr2D 84.211 171 21 5 2107 2273 519141952 519142120 6.500000e-36 161.0
30 TraesCS3D01G301700 chr2D 97.872 47 0 1 2180 2225 314478300 314478254 1.870000e-11 80.5
31 TraesCS3D01G301700 chr1A 91.300 908 65 8 857 1756 215664975 215664074 0.000000e+00 1227.0
32 TraesCS3D01G301700 chr5A 91.141 903 64 9 857 1756 532058925 532058036 0.000000e+00 1210.0
33 TraesCS3D01G301700 chr5A 83.502 297 39 9 1683 1976 532058044 532057755 3.720000e-68 268.0
34 TraesCS3D01G301700 chr4D 96.421 475 15 2 1 474 10044525 10044998 0.000000e+00 782.0
35 TraesCS3D01G301700 chr4D 96.859 382 10 2 476 856 78830799 78831179 2.460000e-179 638.0
36 TraesCS3D01G301700 chr1D 95.368 475 20 2 1 474 491911790 491911317 0.000000e+00 754.0
37 TraesCS3D01G301700 chr1D 97.396 384 9 1 472 855 77622215 77622597 0.000000e+00 652.0
38 TraesCS3D01G301700 chr1D 95.949 395 12 4 464 855 445760133 445760526 2.460000e-179 638.0
39 TraesCS3D01G301700 chr1D 84.270 534 55 9 1769 2273 20009204 20008671 5.640000e-136 494.0
40 TraesCS3D01G301700 chr1D 83.070 443 60 11 1672 2110 92055989 92056420 2.740000e-104 388.0
41 TraesCS3D01G301700 chr1D 91.176 68 6 0 2112 2179 20008942 20008875 2.400000e-15 93.5
42 TraesCS3D01G301700 chr3A 81.311 824 134 19 43 855 634898287 634897473 0.000000e+00 651.0
43 TraesCS3D01G301700 chr2B 82.258 372 54 10 1743 2107 198723502 198723868 6.100000e-81 311.0
44 TraesCS3D01G301700 chr2B 85.833 240 30 4 1671 1909 655219921 655219685 3.750000e-63 252.0
45 TraesCS3D01G301700 chr2B 81.657 169 25 4 1947 2112 669246404 669246569 3.940000e-28 135.0
46 TraesCS3D01G301700 chr7B 81.989 372 55 10 1743 2107 422977275 422976909 2.840000e-79 305.0
47 TraesCS3D01G301700 chr7B 81.501 373 55 12 1743 2107 673541689 673541323 6.140000e-76 294.0
48 TraesCS3D01G301700 chr7B 82.500 160 17 8 1683 1834 122758645 122758801 1.830000e-26 130.0
49 TraesCS3D01G301700 chr5B 81.720 372 56 10 1743 2107 591792103 591791737 1.320000e-77 300.0
50 TraesCS3D01G301700 chr6D 83.228 316 39 7 1671 1975 59106711 59106399 6.180000e-71 278.0
51 TraesCS3D01G301700 chr4A 88.462 104 7 4 856 959 692681242 692681144 1.100000e-23 121.0
52 TraesCS3D01G301700 chr6B 81.752 137 20 5 2140 2273 415735909 415735775 2.390000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G301700 chr3D 415998564 416000836 2272 False 4198.00 4198 100.000000 1 2273 1 chr3D.!!$F4 2272
1 TraesCS3D01G301700 chr3D 445803370 445804263 893 False 1303.00 1303 92.913000 856 1756 1 chr3D.!!$F5 900
2 TraesCS3D01G301700 chr7D 29612066 29613559 1493 False 862.00 1236 87.021500 856 2272 2 chr7D.!!$F2 1416
3 TraesCS3D01G301700 chr7D 411313322 411314935 1613 True 543.50 1291 92.512667 856 2225 3 chr7D.!!$R2 1369
4 TraesCS3D01G301700 chr5D 522788009 522788907 898 False 1253.00 1253 91.814000 856 1756 1 chr5D.!!$F3 900
5 TraesCS3D01G301700 chr5D 517099823 517101151 1328 False 810.50 1260 87.400500 856 2112 2 chr5D.!!$F4 1256
6 TraesCS3D01G301700 chr5D 452399292 452400678 1386 True 560.40 1251 85.599333 856 2273 3 chr5D.!!$R4 1417
7 TraesCS3D01G301700 chr2D 314478254 314479569 1315 True 586.50 1254 91.379000 856 2225 3 chr2D.!!$R4 1369
8 TraesCS3D01G301700 chr2D 50976527 50977049 522 True 353.00 353 79.696000 1678 2179 1 chr2D.!!$R1 501
9 TraesCS3D01G301700 chr1A 215664074 215664975 901 True 1227.00 1227 91.300000 857 1756 1 chr1A.!!$R1 899
10 TraesCS3D01G301700 chr5A 532057755 532058925 1170 True 739.00 1210 87.321500 857 1976 2 chr5A.!!$R1 1119
11 TraesCS3D01G301700 chr1D 20008671 20009204 533 True 293.75 494 87.723000 1769 2273 2 chr1D.!!$R2 504
12 TraesCS3D01G301700 chr3A 634897473 634898287 814 True 651.00 651 81.311000 43 855 1 chr3A.!!$R1 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 756 0.034337 ACGCTTCCGCTTTTGGTCTA 59.966 50.0 0.0 0.0 38.22 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 2160 0.103208 CTGCTTCTAGCGGTAGGGTG 59.897 60.0 20.78 12.13 46.26 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.427692 CAATAGCTCGCGATGTTGC 57.572 52.632 10.36 10.04 0.00 4.17
19 20 0.933097 CAATAGCTCGCGATGTTGCT 59.067 50.000 21.92 21.92 39.30 3.91
20 21 1.070975 CAATAGCTCGCGATGTTGCTC 60.071 52.381 21.89 1.06 37.02 4.26
21 22 0.598680 ATAGCTCGCGATGTTGCTCC 60.599 55.000 21.89 0.00 37.02 4.70
22 23 1.667154 TAGCTCGCGATGTTGCTCCT 61.667 55.000 21.89 4.00 37.02 3.69
23 24 2.520904 GCTCGCGATGTTGCTCCTC 61.521 63.158 10.36 0.00 0.00 3.71
24 25 2.202610 TCGCGATGTTGCTCCTCG 60.203 61.111 3.71 0.00 37.28 4.63
25 26 2.507102 CGCGATGTTGCTCCTCGT 60.507 61.111 0.00 0.00 36.75 4.18
26 27 2.094659 CGCGATGTTGCTCCTCGTT 61.095 57.895 0.00 0.00 36.75 3.85
27 28 1.626654 CGCGATGTTGCTCCTCGTTT 61.627 55.000 0.00 0.00 36.75 3.60
28 29 1.355971 GCGATGTTGCTCCTCGTTTA 58.644 50.000 0.00 0.00 36.75 2.01
29 30 1.933853 GCGATGTTGCTCCTCGTTTAT 59.066 47.619 0.00 0.00 36.75 1.40
30 31 2.351726 GCGATGTTGCTCCTCGTTTATT 59.648 45.455 0.00 0.00 36.75 1.40
31 32 3.554324 GCGATGTTGCTCCTCGTTTATTA 59.446 43.478 0.00 0.00 36.75 0.98
32 33 4.211374 GCGATGTTGCTCCTCGTTTATTAT 59.789 41.667 0.00 0.00 36.75 1.28
33 34 5.277345 GCGATGTTGCTCCTCGTTTATTATT 60.277 40.000 0.00 0.00 36.75 1.40
34 35 6.715464 CGATGTTGCTCCTCGTTTATTATTT 58.285 36.000 0.00 0.00 31.42 1.40
35 36 7.186804 CGATGTTGCTCCTCGTTTATTATTTT 58.813 34.615 0.00 0.00 31.42 1.82
36 37 7.696453 CGATGTTGCTCCTCGTTTATTATTTTT 59.304 33.333 0.00 0.00 31.42 1.94
37 38 8.687824 ATGTTGCTCCTCGTTTATTATTTTTG 57.312 30.769 0.00 0.00 0.00 2.44
38 39 7.877003 TGTTGCTCCTCGTTTATTATTTTTGA 58.123 30.769 0.00 0.00 0.00 2.69
39 40 8.519526 TGTTGCTCCTCGTTTATTATTTTTGAT 58.480 29.630 0.00 0.00 0.00 2.57
40 41 9.997482 GTTGCTCCTCGTTTATTATTTTTGATA 57.003 29.630 0.00 0.00 0.00 2.15
85 86 8.565896 TGTTGAAAGATGTTAGTAGCAATGAT 57.434 30.769 0.00 0.00 0.00 2.45
86 87 8.453320 TGTTGAAAGATGTTAGTAGCAATGATG 58.547 33.333 0.00 0.00 0.00 3.07
98 99 1.068055 GCAATGATGCGGATTGGATCC 60.068 52.381 4.20 4.20 44.25 3.36
118 119 6.183360 GGATCCATGATCTGAGGATTATCCTC 60.183 46.154 29.06 29.06 46.65 3.71
128 129 3.484407 AGGATTATCCTCATTGCTGCAC 58.516 45.455 8.15 0.00 45.66 4.57
130 131 3.825014 GGATTATCCTCATTGCTGCACAT 59.175 43.478 0.00 0.00 32.53 3.21
133 134 6.152323 GGATTATCCTCATTGCTGCACATAAT 59.848 38.462 0.00 4.19 32.53 1.28
134 135 7.337689 GGATTATCCTCATTGCTGCACATAATA 59.662 37.037 0.00 0.00 32.53 0.98
139 140 8.640063 TCCTCATTGCTGCACATAATAATTAT 57.360 30.769 0.00 0.00 0.00 1.28
140 141 8.517056 TCCTCATTGCTGCACATAATAATTATG 58.483 33.333 0.00 0.00 46.56 1.90
154 155 8.795513 CATAATAATTATGTCCTTGATGCACCA 58.204 33.333 0.00 0.00 38.51 4.17
173 174 3.770666 CCACTAGGTGACAGACGTATTG 58.229 50.000 0.00 0.00 35.23 1.90
175 176 4.271442 CACTAGGTGACAGACGTATTGCG 61.271 52.174 0.00 0.00 40.39 4.85
180 181 0.172803 GACAGACGTATTGCGGGAGT 59.827 55.000 0.00 0.00 46.52 3.85
182 183 1.404391 ACAGACGTATTGCGGGAGTAG 59.596 52.381 0.00 0.00 46.52 2.57
183 184 1.674441 CAGACGTATTGCGGGAGTAGA 59.326 52.381 0.00 0.00 46.52 2.59
184 185 2.293677 CAGACGTATTGCGGGAGTAGAT 59.706 50.000 0.00 0.00 46.52 1.98
185 186 2.293677 AGACGTATTGCGGGAGTAGATG 59.706 50.000 0.00 0.00 46.52 2.90
188 189 2.408050 GTATTGCGGGAGTAGATGCAG 58.592 52.381 0.00 0.00 38.75 4.41
190 191 0.175760 TTGCGGGAGTAGATGCAGAC 59.824 55.000 0.00 0.00 38.75 3.51
191 192 0.970427 TGCGGGAGTAGATGCAGACA 60.970 55.000 0.00 0.00 32.73 3.41
194 195 2.035961 GCGGGAGTAGATGCAGACATTA 59.964 50.000 0.00 0.00 36.35 1.90
198 199 5.509670 CGGGAGTAGATGCAGACATTATGAA 60.510 44.000 0.00 0.00 36.35 2.57
200 201 5.403766 GGAGTAGATGCAGACATTATGAACG 59.596 44.000 0.00 0.00 36.35 3.95
201 202 5.907207 AGTAGATGCAGACATTATGAACGT 58.093 37.500 0.00 0.00 36.35 3.99
202 203 6.341316 AGTAGATGCAGACATTATGAACGTT 58.659 36.000 0.00 0.00 36.35 3.99
206 207 3.818210 TGCAGACATTATGAACGTTTGGT 59.182 39.130 0.46 0.00 0.00 3.67
207 208 4.277174 TGCAGACATTATGAACGTTTGGTT 59.723 37.500 0.46 0.00 42.96 3.67
208 209 5.470437 TGCAGACATTATGAACGTTTGGTTA 59.530 36.000 0.46 0.00 39.50 2.85
209 210 6.021596 GCAGACATTATGAACGTTTGGTTAG 58.978 40.000 0.46 0.00 39.50 2.34
210 211 6.021596 CAGACATTATGAACGTTTGGTTAGC 58.978 40.000 0.46 0.00 39.50 3.09
211 212 5.938125 AGACATTATGAACGTTTGGTTAGCT 59.062 36.000 0.46 0.00 39.50 3.32
212 213 6.092259 AGACATTATGAACGTTTGGTTAGCTC 59.908 38.462 0.46 0.00 39.50 4.09
215 216 6.811253 TTATGAACGTTTGGTTAGCTCAAT 57.189 33.333 0.46 0.00 39.50 2.57
216 217 7.908827 TTATGAACGTTTGGTTAGCTCAATA 57.091 32.000 0.46 0.00 39.50 1.90
228 229 8.023021 TGGTTAGCTCAATATGATGACTACTT 57.977 34.615 0.00 0.00 0.00 2.24
241 242 8.879342 ATGATGACTACTTGATAGTTTAGTGC 57.121 34.615 0.00 0.00 44.64 4.40
242 243 7.836842 TGATGACTACTTGATAGTTTAGTGCA 58.163 34.615 0.00 0.00 44.64 4.57
251 252 5.739959 TGATAGTTTAGTGCACCATGCTTA 58.260 37.500 14.63 0.03 45.31 3.09
275 276 4.735369 TGGCTTAGAATTGGGACTTCAAA 58.265 39.130 0.00 0.00 0.00 2.69
279 280 5.473504 GCTTAGAATTGGGACTTCAAAGACA 59.526 40.000 0.00 0.00 0.00 3.41
296 297 4.749245 AGACATTTTGAACGTCATGGAC 57.251 40.909 0.00 0.00 31.92 4.02
347 348 8.621286 AGTTAATATTTCAAGCAAATACCCGAG 58.379 33.333 0.00 0.00 39.34 4.63
351 352 3.410631 TCAAGCAAATACCCGAGTTGA 57.589 42.857 0.00 0.00 35.03 3.18
352 353 3.334691 TCAAGCAAATACCCGAGTTGAG 58.665 45.455 0.00 0.00 35.03 3.02
353 354 3.007506 TCAAGCAAATACCCGAGTTGAGA 59.992 43.478 0.00 0.00 35.03 3.27
354 355 3.252974 AGCAAATACCCGAGTTGAGAG 57.747 47.619 0.00 0.00 35.03 3.20
355 356 2.832129 AGCAAATACCCGAGTTGAGAGA 59.168 45.455 0.00 0.00 35.03 3.10
356 357 3.452627 AGCAAATACCCGAGTTGAGAGAT 59.547 43.478 0.00 0.00 35.03 2.75
357 358 4.649674 AGCAAATACCCGAGTTGAGAGATA 59.350 41.667 0.00 0.00 35.03 1.98
358 359 5.305644 AGCAAATACCCGAGTTGAGAGATAT 59.694 40.000 0.00 0.00 35.03 1.63
359 360 5.406780 GCAAATACCCGAGTTGAGAGATATG 59.593 44.000 0.00 0.00 35.03 1.78
360 361 6.738731 GCAAATACCCGAGTTGAGAGATATGA 60.739 42.308 0.00 0.00 35.03 2.15
361 362 6.978674 AATACCCGAGTTGAGAGATATGAA 57.021 37.500 0.00 0.00 0.00 2.57
362 363 4.927978 ACCCGAGTTGAGAGATATGAAG 57.072 45.455 0.00 0.00 0.00 3.02
363 364 4.282496 ACCCGAGTTGAGAGATATGAAGT 58.718 43.478 0.00 0.00 0.00 3.01
364 365 4.339814 ACCCGAGTTGAGAGATATGAAGTC 59.660 45.833 0.00 0.00 0.00 3.01
365 366 4.582656 CCCGAGTTGAGAGATATGAAGTCT 59.417 45.833 0.00 0.00 0.00 3.24
366 367 5.278266 CCCGAGTTGAGAGATATGAAGTCTC 60.278 48.000 0.00 0.00 41.89 3.36
367 368 5.278266 CCGAGTTGAGAGATATGAAGTCTCC 60.278 48.000 0.00 0.00 42.41 3.71
368 369 5.298026 CGAGTTGAGAGATATGAAGTCTCCA 59.702 44.000 0.00 0.00 42.41 3.86
369 370 6.183360 CGAGTTGAGAGATATGAAGTCTCCAA 60.183 42.308 0.00 2.43 42.41 3.53
370 371 6.872920 AGTTGAGAGATATGAAGTCTCCAAC 58.127 40.000 18.85 18.85 44.01 3.77
371 372 6.438741 AGTTGAGAGATATGAAGTCTCCAACA 59.561 38.462 23.44 11.96 44.83 3.33
372 373 6.857437 TGAGAGATATGAAGTCTCCAACAA 57.143 37.500 0.00 0.00 42.41 2.83
373 374 6.871844 TGAGAGATATGAAGTCTCCAACAAG 58.128 40.000 0.00 0.00 42.41 3.16
374 375 6.438741 TGAGAGATATGAAGTCTCCAACAAGT 59.561 38.462 0.00 0.00 42.41 3.16
375 376 7.038729 TGAGAGATATGAAGTCTCCAACAAGTT 60.039 37.037 0.00 0.00 42.41 2.66
376 377 7.327214 AGAGATATGAAGTCTCCAACAAGTTC 58.673 38.462 0.00 0.00 42.41 3.01
377 378 7.180051 AGAGATATGAAGTCTCCAACAAGTTCT 59.820 37.037 0.00 0.00 42.41 3.01
378 379 8.367660 AGATATGAAGTCTCCAACAAGTTCTA 57.632 34.615 0.00 0.00 0.00 2.10
379 380 8.986991 AGATATGAAGTCTCCAACAAGTTCTAT 58.013 33.333 0.00 0.00 0.00 1.98
382 383 6.398918 TGAAGTCTCCAACAAGTTCTATAGC 58.601 40.000 0.00 0.00 0.00 2.97
383 384 6.211584 TGAAGTCTCCAACAAGTTCTATAGCT 59.788 38.462 0.00 0.00 0.00 3.32
384 385 7.396339 TGAAGTCTCCAACAAGTTCTATAGCTA 59.604 37.037 0.00 0.00 0.00 3.32
385 386 7.719871 AGTCTCCAACAAGTTCTATAGCTAA 57.280 36.000 0.00 0.00 0.00 3.09
386 387 8.135382 AGTCTCCAACAAGTTCTATAGCTAAA 57.865 34.615 0.00 0.00 0.00 1.85
387 388 8.594550 AGTCTCCAACAAGTTCTATAGCTAAAA 58.405 33.333 0.00 0.00 0.00 1.52
388 389 8.874816 GTCTCCAACAAGTTCTATAGCTAAAAG 58.125 37.037 0.00 0.00 0.00 2.27
389 390 8.812972 TCTCCAACAAGTTCTATAGCTAAAAGA 58.187 33.333 0.00 0.90 0.00 2.52
390 391 9.606631 CTCCAACAAGTTCTATAGCTAAAAGAT 57.393 33.333 9.33 0.00 0.00 2.40
391 392 9.383519 TCCAACAAGTTCTATAGCTAAAAGATG 57.616 33.333 9.33 7.95 0.00 2.90
392 393 8.616076 CCAACAAGTTCTATAGCTAAAAGATGG 58.384 37.037 9.33 9.03 0.00 3.51
393 394 9.383519 CAACAAGTTCTATAGCTAAAAGATGGA 57.616 33.333 9.33 0.00 0.00 3.41
394 395 9.606631 AACAAGTTCTATAGCTAAAAGATGGAG 57.393 33.333 9.33 4.81 0.00 3.86
395 396 8.207545 ACAAGTTCTATAGCTAAAAGATGGAGG 58.792 37.037 9.33 3.50 0.00 4.30
396 397 8.424918 CAAGTTCTATAGCTAAAAGATGGAGGA 58.575 37.037 9.33 0.00 0.00 3.71
397 398 8.189119 AGTTCTATAGCTAAAAGATGGAGGAG 57.811 38.462 9.33 0.00 0.00 3.69
398 399 8.007742 AGTTCTATAGCTAAAAGATGGAGGAGA 58.992 37.037 9.33 0.00 0.00 3.71
399 400 8.643324 GTTCTATAGCTAAAAGATGGAGGAGAA 58.357 37.037 9.33 0.00 0.00 2.87
400 401 8.964533 TCTATAGCTAAAAGATGGAGGAGAAT 57.035 34.615 0.00 0.00 0.00 2.40
403 404 5.863965 AGCTAAAAGATGGAGGAGAATAGC 58.136 41.667 0.00 0.00 34.84 2.97
404 405 5.606329 AGCTAAAAGATGGAGGAGAATAGCT 59.394 40.000 0.00 0.00 38.86 3.32
405 406 5.931724 GCTAAAAGATGGAGGAGAATAGCTC 59.068 44.000 0.00 0.00 43.17 4.09
406 407 5.965033 AAAAGATGGAGGAGAATAGCTCA 57.035 39.130 0.00 0.00 45.81 4.26
407 408 5.965033 AAAGATGGAGGAGAATAGCTCAA 57.035 39.130 0.00 0.00 45.81 3.02
408 409 5.549742 AAGATGGAGGAGAATAGCTCAAG 57.450 43.478 0.00 0.00 45.81 3.02
409 410 3.324556 AGATGGAGGAGAATAGCTCAAGC 59.675 47.826 0.00 0.00 45.81 4.01
410 411 2.470990 TGGAGGAGAATAGCTCAAGCA 58.529 47.619 4.59 0.00 45.81 3.91
411 412 2.433604 TGGAGGAGAATAGCTCAAGCAG 59.566 50.000 4.59 0.00 45.81 4.24
412 413 2.433970 GGAGGAGAATAGCTCAAGCAGT 59.566 50.000 4.59 0.00 45.81 4.40
413 414 3.456280 GAGGAGAATAGCTCAAGCAGTG 58.544 50.000 4.59 0.00 45.81 3.66
414 415 3.102972 AGGAGAATAGCTCAAGCAGTGA 58.897 45.455 4.59 0.00 45.81 3.41
435 436 3.687572 GCATGTGCTTAGATTGTCTGG 57.312 47.619 0.00 0.00 38.21 3.86
436 437 2.357009 GCATGTGCTTAGATTGTCTGGG 59.643 50.000 0.00 0.00 38.21 4.45
437 438 3.614092 CATGTGCTTAGATTGTCTGGGT 58.386 45.455 0.00 0.00 0.00 4.51
438 439 4.769688 CATGTGCTTAGATTGTCTGGGTA 58.230 43.478 0.00 0.00 0.00 3.69
439 440 4.202245 TGTGCTTAGATTGTCTGGGTAC 57.798 45.455 0.00 0.00 0.00 3.34
440 441 3.838317 TGTGCTTAGATTGTCTGGGTACT 59.162 43.478 0.00 0.00 0.00 2.73
441 442 5.020795 TGTGCTTAGATTGTCTGGGTACTA 58.979 41.667 0.00 0.00 0.00 1.82
442 443 5.105473 TGTGCTTAGATTGTCTGGGTACTAC 60.105 44.000 0.00 0.00 0.00 2.73
443 444 5.020795 TGCTTAGATTGTCTGGGTACTACA 58.979 41.667 0.00 0.00 0.00 2.74
444 445 5.482526 TGCTTAGATTGTCTGGGTACTACAA 59.517 40.000 0.00 0.00 37.51 2.41
445 446 6.156256 TGCTTAGATTGTCTGGGTACTACAAT 59.844 38.462 12.80 12.80 44.35 2.71
450 451 5.818678 TTGTCTGGGTACTACAATCACTT 57.181 39.130 0.00 0.00 0.00 3.16
451 452 5.147330 TGTCTGGGTACTACAATCACTTG 57.853 43.478 0.00 0.00 38.39 3.16
452 453 4.836175 TGTCTGGGTACTACAATCACTTGA 59.164 41.667 0.00 0.00 36.20 3.02
453 454 5.305902 TGTCTGGGTACTACAATCACTTGAA 59.694 40.000 0.00 0.00 36.20 2.69
454 455 6.013725 TGTCTGGGTACTACAATCACTTGAAT 60.014 38.462 0.00 0.00 36.20 2.57
455 456 6.535508 GTCTGGGTACTACAATCACTTGAATC 59.464 42.308 0.00 0.00 36.20 2.52
456 457 6.212589 TCTGGGTACTACAATCACTTGAATCA 59.787 38.462 0.00 0.00 36.20 2.57
457 458 6.774673 TGGGTACTACAATCACTTGAATCAA 58.225 36.000 0.00 0.00 36.20 2.57
458 459 6.878923 TGGGTACTACAATCACTTGAATCAAG 59.121 38.462 20.35 20.35 45.85 3.02
473 474 6.834168 TGAATCAAGTGGGAGTTAATTTCC 57.166 37.500 1.37 1.37 0.00 3.13
474 475 7.577616 CTTGAATCAAGTGGGAGTTAATTTCCC 60.578 40.741 14.47 17.10 42.12 3.97
480 481 2.124277 GGAGTTAATTTCCCAGCCGT 57.876 50.000 0.00 0.00 0.00 5.68
481 482 1.743394 GGAGTTAATTTCCCAGCCGTG 59.257 52.381 0.00 0.00 0.00 4.94
482 483 2.433436 GAGTTAATTTCCCAGCCGTGT 58.567 47.619 0.00 0.00 0.00 4.49
483 484 2.159382 AGTTAATTTCCCAGCCGTGTG 58.841 47.619 0.00 0.00 0.00 3.82
484 485 0.885196 TTAATTTCCCAGCCGTGTGC 59.115 50.000 0.00 0.00 41.71 4.57
508 509 2.959201 CCCCCTCCACCATATTCCA 58.041 57.895 0.00 0.00 0.00 3.53
509 510 0.478507 CCCCCTCCACCATATTCCAC 59.521 60.000 0.00 0.00 0.00 4.02
510 511 0.478507 CCCCTCCACCATATTCCACC 59.521 60.000 0.00 0.00 0.00 4.61
511 512 1.522900 CCCTCCACCATATTCCACCT 58.477 55.000 0.00 0.00 0.00 4.00
512 513 1.421646 CCCTCCACCATATTCCACCTC 59.578 57.143 0.00 0.00 0.00 3.85
513 514 1.070758 CCTCCACCATATTCCACCTCG 59.929 57.143 0.00 0.00 0.00 4.63
514 515 1.070758 CTCCACCATATTCCACCTCGG 59.929 57.143 0.00 0.00 0.00 4.63
515 516 0.837272 CCACCATATTCCACCTCGGT 59.163 55.000 0.00 0.00 35.57 4.69
516 517 1.202651 CCACCATATTCCACCTCGGTC 60.203 57.143 0.00 0.00 35.57 4.79
517 518 1.484653 CACCATATTCCACCTCGGTCA 59.515 52.381 0.00 0.00 35.57 4.02
518 519 2.104792 CACCATATTCCACCTCGGTCAT 59.895 50.000 0.00 0.00 35.57 3.06
519 520 3.323691 CACCATATTCCACCTCGGTCATA 59.676 47.826 0.00 0.00 35.57 2.15
520 521 4.020218 CACCATATTCCACCTCGGTCATAT 60.020 45.833 0.00 0.00 35.57 1.78
521 522 4.223032 ACCATATTCCACCTCGGTCATATC 59.777 45.833 0.00 0.00 35.57 1.63
522 523 4.424626 CATATTCCACCTCGGTCATATCG 58.575 47.826 0.00 0.00 35.57 2.92
523 524 1.771565 TTCCACCTCGGTCATATCGT 58.228 50.000 0.00 0.00 35.57 3.73
524 525 2.643995 TCCACCTCGGTCATATCGTA 57.356 50.000 0.00 0.00 35.57 3.43
525 526 2.501261 TCCACCTCGGTCATATCGTAG 58.499 52.381 0.00 0.00 35.57 3.51
526 527 1.068472 CCACCTCGGTCATATCGTAGC 60.068 57.143 0.00 0.00 0.00 3.58
527 528 0.873054 ACCTCGGTCATATCGTAGCG 59.127 55.000 0.00 0.00 37.92 4.26
528 529 0.168348 CCTCGGTCATATCGTAGCGG 59.832 60.000 0.00 0.00 37.22 5.52
529 530 0.873054 CTCGGTCATATCGTAGCGGT 59.127 55.000 0.00 0.00 37.22 5.68
530 531 0.589708 TCGGTCATATCGTAGCGGTG 59.410 55.000 0.00 0.00 37.22 4.94
531 532 1.002250 CGGTCATATCGTAGCGGTGC 61.002 60.000 0.00 0.00 33.22 5.01
532 533 0.314302 GGTCATATCGTAGCGGTGCT 59.686 55.000 0.00 0.00 43.41 4.40
533 534 1.269621 GGTCATATCGTAGCGGTGCTT 60.270 52.381 0.00 0.00 40.44 3.91
534 535 2.030540 GGTCATATCGTAGCGGTGCTTA 60.031 50.000 0.00 0.00 40.44 3.09
535 536 3.235195 GTCATATCGTAGCGGTGCTTAG 58.765 50.000 0.00 0.00 40.44 2.18
536 537 2.228103 TCATATCGTAGCGGTGCTTAGG 59.772 50.000 0.00 0.00 40.44 2.69
537 538 0.313043 TATCGTAGCGGTGCTTAGGC 59.687 55.000 0.00 0.00 40.44 3.93
549 550 2.846371 CTTAGGCAAAGCTCTGCGT 58.154 52.632 12.46 12.46 43.60 5.24
550 551 0.723981 CTTAGGCAAAGCTCTGCGTC 59.276 55.000 11.06 0.00 43.60 5.19
551 552 1.014044 TTAGGCAAAGCTCTGCGTCG 61.014 55.000 11.06 0.00 43.60 5.12
552 553 2.835701 TAGGCAAAGCTCTGCGTCGG 62.836 60.000 11.06 0.00 43.60 4.79
553 554 3.044305 GCAAAGCTCTGCGTCGGT 61.044 61.111 0.00 0.00 31.50 4.69
554 555 1.736645 GCAAAGCTCTGCGTCGGTA 60.737 57.895 0.00 0.00 31.50 4.02
555 556 1.687494 GCAAAGCTCTGCGTCGGTAG 61.687 60.000 0.00 0.00 31.50 3.18
556 557 1.446272 AAAGCTCTGCGTCGGTAGC 60.446 57.895 0.00 0.00 35.16 3.58
557 558 2.154798 AAAGCTCTGCGTCGGTAGCA 62.155 55.000 0.00 1.02 42.99 3.49
558 559 2.126071 GCTCTGCGTCGGTAGCAA 60.126 61.111 0.00 0.00 44.67 3.91
559 560 2.445438 GCTCTGCGTCGGTAGCAAC 61.445 63.158 0.00 0.00 44.67 4.17
560 561 1.080772 CTCTGCGTCGGTAGCAACA 60.081 57.895 0.00 0.00 44.67 3.33
561 562 0.458543 CTCTGCGTCGGTAGCAACAT 60.459 55.000 0.00 0.00 44.67 2.71
562 563 0.457853 TCTGCGTCGGTAGCAACATC 60.458 55.000 0.00 0.00 44.67 3.06
563 564 0.735978 CTGCGTCGGTAGCAACATCA 60.736 55.000 0.00 0.00 44.67 3.07
564 565 0.108377 TGCGTCGGTAGCAACATCAT 60.108 50.000 0.00 0.00 42.18 2.45
565 566 0.577269 GCGTCGGTAGCAACATCATC 59.423 55.000 0.00 0.00 34.19 2.92
566 567 1.921243 CGTCGGTAGCAACATCATCA 58.079 50.000 0.00 0.00 0.00 3.07
567 568 1.588404 CGTCGGTAGCAACATCATCAC 59.412 52.381 0.00 0.00 0.00 3.06
568 569 1.933853 GTCGGTAGCAACATCATCACC 59.066 52.381 0.00 0.00 0.00 4.02
569 570 0.930310 CGGTAGCAACATCATCACCG 59.070 55.000 0.00 0.00 42.41 4.94
570 571 1.739035 CGGTAGCAACATCATCACCGT 60.739 52.381 2.91 0.00 42.93 4.83
571 572 1.933853 GGTAGCAACATCATCACCGTC 59.066 52.381 0.00 0.00 0.00 4.79
572 573 2.616960 GTAGCAACATCATCACCGTCA 58.383 47.619 0.00 0.00 0.00 4.35
573 574 2.408271 AGCAACATCATCACCGTCAT 57.592 45.000 0.00 0.00 0.00 3.06
574 575 2.283298 AGCAACATCATCACCGTCATC 58.717 47.619 0.00 0.00 0.00 2.92
575 576 2.009051 GCAACATCATCACCGTCATCA 58.991 47.619 0.00 0.00 0.00 3.07
576 577 2.223112 GCAACATCATCACCGTCATCAC 60.223 50.000 0.00 0.00 0.00 3.06
577 578 1.926561 ACATCATCACCGTCATCACG 58.073 50.000 0.00 0.00 46.29 4.35
578 579 0.578683 CATCATCACCGTCATCACGC 59.421 55.000 0.00 0.00 45.29 5.34
579 580 0.530650 ATCATCACCGTCATCACGCC 60.531 55.000 0.00 0.00 45.29 5.68
580 581 2.202743 ATCACCGTCATCACGCCG 60.203 61.111 0.00 0.00 45.29 6.46
581 582 3.001902 ATCACCGTCATCACGCCGT 62.002 57.895 0.00 0.00 45.29 5.68
582 583 2.884087 ATCACCGTCATCACGCCGTC 62.884 60.000 0.00 0.00 45.29 4.79
583 584 4.771356 ACCGTCATCACGCCGTCG 62.771 66.667 0.00 0.00 45.29 5.12
597 598 3.843985 GTCGTGCTGACGGAACTC 58.156 61.111 0.00 0.00 46.11 3.01
598 599 1.286260 GTCGTGCTGACGGAACTCT 59.714 57.895 0.00 0.00 46.11 3.24
599 600 0.729816 GTCGTGCTGACGGAACTCTC 60.730 60.000 0.00 0.00 46.11 3.20
600 601 1.444553 CGTGCTGACGGAACTCTCC 60.445 63.158 0.00 0.00 42.18 3.71
601 602 1.079750 GTGCTGACGGAACTCTCCC 60.080 63.158 0.00 0.00 38.71 4.30
607 608 4.891566 CGGAACTCTCCCGTGAAG 57.108 61.111 0.00 0.00 41.91 3.02
608 609 1.446272 CGGAACTCTCCCGTGAAGC 60.446 63.158 0.00 0.00 41.91 3.86
609 610 1.878656 CGGAACTCTCCCGTGAAGCT 61.879 60.000 0.00 0.00 41.91 3.74
610 611 0.108567 GGAACTCTCCCGTGAAGCTC 60.109 60.000 0.00 0.00 35.42 4.09
611 612 0.892063 GAACTCTCCCGTGAAGCTCT 59.108 55.000 0.00 0.00 0.00 4.09
612 613 0.605589 AACTCTCCCGTGAAGCTCTG 59.394 55.000 0.00 0.00 0.00 3.35
613 614 1.153667 CTCTCCCGTGAAGCTCTGC 60.154 63.158 0.00 0.00 0.00 4.26
614 615 1.603236 CTCTCCCGTGAAGCTCTGCT 61.603 60.000 0.00 0.00 42.56 4.24
615 616 1.447489 CTCCCGTGAAGCTCTGCTG 60.447 63.158 0.00 0.00 39.62 4.41
616 617 2.435586 CCCGTGAAGCTCTGCTGG 60.436 66.667 0.00 0.00 39.62 4.85
617 618 2.659016 CCGTGAAGCTCTGCTGGA 59.341 61.111 0.00 0.00 39.62 3.86
618 619 1.220206 CCGTGAAGCTCTGCTGGAT 59.780 57.895 0.00 0.00 39.62 3.41
619 620 0.809241 CCGTGAAGCTCTGCTGGATC 60.809 60.000 0.00 0.00 39.62 3.36
620 621 1.144565 CGTGAAGCTCTGCTGGATCG 61.145 60.000 0.00 0.00 39.62 3.69
621 622 0.809241 GTGAAGCTCTGCTGGATCGG 60.809 60.000 0.00 0.00 39.62 4.18
622 623 0.972471 TGAAGCTCTGCTGGATCGGA 60.972 55.000 0.00 0.00 39.62 4.55
623 624 0.249405 GAAGCTCTGCTGGATCGGAG 60.249 60.000 0.00 0.00 39.62 4.63
624 625 0.975040 AAGCTCTGCTGGATCGGAGT 60.975 55.000 0.00 0.00 39.62 3.85
625 626 0.975040 AGCTCTGCTGGATCGGAGTT 60.975 55.000 0.00 0.00 40.67 3.01
626 627 0.529555 GCTCTGCTGGATCGGAGTTC 60.530 60.000 2.12 0.00 40.67 3.01
627 628 0.248825 CTCTGCTGGATCGGAGTTCG 60.249 60.000 0.00 0.00 35.32 3.95
628 629 1.880340 CTGCTGGATCGGAGTTCGC 60.880 63.158 0.00 0.00 39.05 4.70
629 630 2.956964 GCTGGATCGGAGTTCGCG 60.957 66.667 0.00 0.00 39.05 5.87
630 631 2.278857 CTGGATCGGAGTTCGCGG 60.279 66.667 6.13 0.00 39.05 6.46
631 632 3.774959 CTGGATCGGAGTTCGCGGG 62.775 68.421 6.13 0.00 39.05 6.13
632 633 3.524606 GGATCGGAGTTCGCGGGA 61.525 66.667 6.13 0.00 39.05 5.14
633 634 2.278661 GATCGGAGTTCGCGGGAC 60.279 66.667 6.13 5.78 39.05 4.46
648 649 1.557651 GGGACGTAATCGAGCTGAAC 58.442 55.000 0.00 0.00 40.62 3.18
649 650 1.189403 GGACGTAATCGAGCTGAACG 58.811 55.000 0.00 0.00 40.62 3.95
650 651 1.467035 GGACGTAATCGAGCTGAACGT 60.467 52.381 12.62 12.62 44.41 3.99
651 652 1.578023 GACGTAATCGAGCTGAACGTG 59.422 52.381 15.75 1.45 42.44 4.49
652 653 1.068748 ACGTAATCGAGCTGAACGTGT 60.069 47.619 12.23 0.00 41.24 4.49
653 654 1.317611 CGTAATCGAGCTGAACGTGTG 59.682 52.381 0.00 0.00 39.71 3.82
654 655 1.059264 GTAATCGAGCTGAACGTGTGC 59.941 52.381 0.00 0.00 0.00 4.57
655 656 0.319900 AATCGAGCTGAACGTGTGCT 60.320 50.000 9.46 9.46 40.02 4.40
656 657 1.010935 ATCGAGCTGAACGTGTGCTG 61.011 55.000 13.62 7.51 37.16 4.41
657 658 1.661509 CGAGCTGAACGTGTGCTGA 60.662 57.895 13.62 0.00 37.16 4.26
658 659 1.215014 CGAGCTGAACGTGTGCTGAA 61.215 55.000 13.62 0.00 37.16 3.02
659 660 0.233332 GAGCTGAACGTGTGCTGAAC 59.767 55.000 13.62 0.00 37.16 3.18
660 661 0.179073 AGCTGAACGTGTGCTGAACT 60.179 50.000 8.99 0.00 35.54 3.01
661 662 0.233332 GCTGAACGTGTGCTGAACTC 59.767 55.000 0.00 0.00 0.00 3.01
665 666 3.848142 CGTGTGCTGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
666 667 1.734477 CGTGTGCTGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
667 668 1.367840 GTGTGCTGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
668 669 0.946221 GTGTGCTGAACTCGGAGGTG 60.946 60.000 10.23 0.00 0.00 4.00
669 670 2.029844 GTGCTGAACTCGGAGGTGC 61.030 63.158 10.23 4.15 0.00 5.01
670 671 2.435059 GCTGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
679 680 3.557824 GGAGGTGCCGTACGTTTG 58.442 61.111 15.21 0.00 0.00 2.93
680 681 2.030958 GGAGGTGCCGTACGTTTGG 61.031 63.158 15.21 0.00 0.00 3.28
681 682 1.301165 GAGGTGCCGTACGTTTGGT 60.301 57.895 15.21 0.00 0.00 3.67
682 683 0.038343 GAGGTGCCGTACGTTTGGTA 60.038 55.000 15.21 0.00 0.00 3.25
683 684 0.319813 AGGTGCCGTACGTTTGGTAC 60.320 55.000 15.21 15.48 46.54 3.34
692 693 2.088950 ACGTTTGGTACTTGGATCGG 57.911 50.000 0.00 0.00 0.00 4.18
693 694 1.345415 ACGTTTGGTACTTGGATCGGT 59.655 47.619 0.00 0.00 0.00 4.69
694 695 1.997606 CGTTTGGTACTTGGATCGGTC 59.002 52.381 0.00 0.00 0.00 4.79
695 696 1.997606 GTTTGGTACTTGGATCGGTCG 59.002 52.381 0.00 0.00 0.00 4.79
696 697 0.533491 TTGGTACTTGGATCGGTCGG 59.467 55.000 0.00 0.00 0.00 4.79
697 698 0.323633 TGGTACTTGGATCGGTCGGA 60.324 55.000 0.00 0.00 0.00 4.55
698 699 1.038280 GGTACTTGGATCGGTCGGAT 58.962 55.000 0.00 0.00 38.35 4.18
705 706 3.165559 GATCGGTCGGATCGTGAAG 57.834 57.895 10.85 0.00 42.02 3.02
706 707 0.661552 GATCGGTCGGATCGTGAAGA 59.338 55.000 10.85 0.00 42.02 2.87
707 708 1.267261 GATCGGTCGGATCGTGAAGAT 59.733 52.381 10.85 0.00 42.02 2.40
708 709 0.380733 TCGGTCGGATCGTGAAGATG 59.619 55.000 10.85 0.00 40.26 2.90
709 710 0.100682 CGGTCGGATCGTGAAGATGT 59.899 55.000 1.71 0.00 40.26 3.06
710 711 1.332686 CGGTCGGATCGTGAAGATGTA 59.667 52.381 1.71 0.00 40.26 2.29
711 712 2.728922 GGTCGGATCGTGAAGATGTAC 58.271 52.381 0.00 0.00 40.26 2.90
712 713 2.373269 GTCGGATCGTGAAGATGTACG 58.627 52.381 0.00 0.00 40.26 3.67
726 727 2.267188 TGTACGACTACATCAACCGC 57.733 50.000 0.00 0.00 0.00 5.68
727 728 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
728 729 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
729 730 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
730 731 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
731 732 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
732 733 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
733 734 0.179225 CTACATCAACCGCGTTGTGC 60.179 55.000 16.97 0.00 43.23 4.57
734 735 0.601576 TACATCAACCGCGTTGTGCT 60.602 50.000 16.97 6.88 43.23 4.40
735 736 0.601576 ACATCAACCGCGTTGTGCTA 60.602 50.000 16.97 3.28 43.23 3.49
736 737 0.515127 CATCAACCGCGTTGTGCTAA 59.485 50.000 16.97 2.99 43.23 3.09
737 738 0.515564 ATCAACCGCGTTGTGCTAAC 59.484 50.000 16.97 0.00 43.23 2.34
738 739 1.438059 CAACCGCGTTGTGCTAACG 60.438 57.895 18.25 18.25 45.56 3.18
744 745 1.129809 CGTTGTGCTAACGCTTCCG 59.870 57.895 12.46 0.00 36.82 4.30
745 746 1.154469 GTTGTGCTAACGCTTCCGC 60.154 57.895 0.00 0.00 38.22 5.54
746 747 1.301401 TTGTGCTAACGCTTCCGCT 60.301 52.632 0.00 0.00 38.22 5.52
747 748 0.882927 TTGTGCTAACGCTTCCGCTT 60.883 50.000 0.00 0.00 38.22 4.68
748 749 0.882927 TGTGCTAACGCTTCCGCTTT 60.883 50.000 0.00 0.00 38.22 3.51
749 750 0.237498 GTGCTAACGCTTCCGCTTTT 59.763 50.000 0.00 0.00 38.22 2.27
750 751 0.237235 TGCTAACGCTTCCGCTTTTG 59.763 50.000 0.00 0.00 38.22 2.44
751 752 0.454452 GCTAACGCTTCCGCTTTTGG 60.454 55.000 0.00 0.00 38.22 3.28
752 753 0.872388 CTAACGCTTCCGCTTTTGGT 59.128 50.000 0.00 0.00 38.22 3.67
753 754 0.869730 TAACGCTTCCGCTTTTGGTC 59.130 50.000 0.00 0.00 38.22 4.02
754 755 0.818040 AACGCTTCCGCTTTTGGTCT 60.818 50.000 0.00 0.00 38.22 3.85
755 756 0.034337 ACGCTTCCGCTTTTGGTCTA 59.966 50.000 0.00 0.00 38.22 2.59
756 757 0.442699 CGCTTCCGCTTTTGGTCTAC 59.557 55.000 0.00 0.00 0.00 2.59
757 758 0.442699 GCTTCCGCTTTTGGTCTACG 59.557 55.000 0.00 0.00 0.00 3.51
758 759 1.938016 GCTTCCGCTTTTGGTCTACGA 60.938 52.381 0.00 0.00 0.00 3.43
759 760 1.993370 CTTCCGCTTTTGGTCTACGAG 59.007 52.381 0.00 0.00 0.00 4.18
760 761 0.245539 TCCGCTTTTGGTCTACGAGG 59.754 55.000 0.00 0.00 0.00 4.63
761 762 0.739813 CCGCTTTTGGTCTACGAGGG 60.740 60.000 0.00 0.00 0.00 4.30
762 763 0.037605 CGCTTTTGGTCTACGAGGGT 60.038 55.000 0.00 0.00 0.00 4.34
763 764 1.203052 CGCTTTTGGTCTACGAGGGTA 59.797 52.381 0.00 0.00 0.00 3.69
764 765 2.614779 GCTTTTGGTCTACGAGGGTAC 58.385 52.381 0.00 0.00 0.00 3.34
765 766 2.872370 CTTTTGGTCTACGAGGGTACG 58.128 52.381 0.00 0.00 39.31 3.67
767 768 1.167851 TTGGTCTACGAGGGTACGTG 58.832 55.000 0.00 0.00 46.02 4.49
768 769 0.677731 TGGTCTACGAGGGTACGTGG 60.678 60.000 0.00 0.00 46.02 4.94
770 771 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
771 772 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
772 773 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
773 774 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
774 775 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
775 776 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
776 777 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
777 778 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
778 779 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
779 780 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
780 781 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
781 782 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
782 783 1.908793 CGTGGACACACTCTCCCCT 60.909 63.158 3.12 0.00 45.50 4.79
783 784 1.878656 CGTGGACACACTCTCCCCTC 61.879 65.000 3.12 0.00 45.50 4.30
784 785 0.543174 GTGGACACACTCTCCCCTCT 60.543 60.000 0.00 0.00 44.29 3.69
785 786 0.251832 TGGACACACTCTCCCCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
786 787 1.316706 GGACACACTCTCCCCTCTCG 61.317 65.000 0.00 0.00 0.00 4.04
787 788 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
788 789 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
789 790 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
790 791 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
791 792 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
792 793 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
793 794 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
794 795 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
795 796 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
796 797 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
797 798 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
798 799 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
799 800 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
800 801 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
801 802 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
802 803 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
803 804 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
804 805 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
805 806 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
806 807 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
807 808 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
808 809 2.786777 TGCTATGCATCACCATGATCC 58.213 47.619 0.19 0.00 34.28 3.36
809 810 2.374170 TGCTATGCATCACCATGATCCT 59.626 45.455 0.19 0.00 34.28 3.24
810 811 2.747989 GCTATGCATCACCATGATCCTG 59.252 50.000 0.19 0.00 34.28 3.86
811 812 3.809678 GCTATGCATCACCATGATCCTGT 60.810 47.826 0.19 0.00 34.28 4.00
812 813 2.047002 TGCATCACCATGATCCTGTG 57.953 50.000 0.00 0.00 34.28 3.66
813 814 1.282738 TGCATCACCATGATCCTGTGT 59.717 47.619 0.00 0.00 34.28 3.72
814 815 1.674441 GCATCACCATGATCCTGTGTG 59.326 52.381 0.00 10.98 34.28 3.82
815 816 2.942752 GCATCACCATGATCCTGTGTGT 60.943 50.000 14.49 0.00 34.28 3.72
816 817 2.477845 TCACCATGATCCTGTGTGTG 57.522 50.000 14.49 8.57 0.00 3.82
817 818 0.806868 CACCATGATCCTGTGTGTGC 59.193 55.000 0.00 0.00 0.00 4.57
818 819 0.674581 ACCATGATCCTGTGTGTGCG 60.675 55.000 0.00 0.00 0.00 5.34
819 820 0.674581 CCATGATCCTGTGTGTGCGT 60.675 55.000 0.00 0.00 0.00 5.24
820 821 1.405391 CCATGATCCTGTGTGTGCGTA 60.405 52.381 0.00 0.00 0.00 4.42
821 822 1.929169 CATGATCCTGTGTGTGCGTAG 59.071 52.381 0.00 0.00 0.00 3.51
822 823 0.246360 TGATCCTGTGTGTGCGTAGG 59.754 55.000 0.00 0.00 0.00 3.18
823 824 0.530744 GATCCTGTGTGTGCGTAGGA 59.469 55.000 0.00 0.00 43.01 2.94
824 825 1.195115 ATCCTGTGTGTGCGTAGGAT 58.805 50.000 0.00 0.00 43.42 3.24
825 826 0.973632 TCCTGTGTGTGCGTAGGATT 59.026 50.000 0.00 0.00 34.54 3.01
826 827 1.346395 TCCTGTGTGTGCGTAGGATTT 59.654 47.619 0.00 0.00 34.54 2.17
827 828 2.151202 CCTGTGTGTGCGTAGGATTTT 58.849 47.619 0.00 0.00 31.91 1.82
828 829 2.552315 CCTGTGTGTGCGTAGGATTTTT 59.448 45.455 0.00 0.00 31.91 1.94
851 852 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
852 853 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
853 854 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
854 855 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
1007 1013 8.392612 CAAAATTTTCTTTATAGGCATGGCTTG 58.607 33.333 28.30 10.13 0.00 4.01
1010 1016 6.603940 TTTCTTTATAGGCATGGCTTGTTT 57.396 33.333 28.30 12.32 0.00 2.83
1068 1075 1.003355 CATGCCGGACAAGTGGACT 60.003 57.895 5.05 0.00 0.00 3.85
1069 1076 0.249120 CATGCCGGACAAGTGGACTA 59.751 55.000 5.05 0.00 0.00 2.59
1086 1093 5.180680 GTGGACTAACACCAAGTTGGATAAC 59.819 44.000 28.80 11.59 40.96 1.89
1164 1171 2.803817 GGTATCCACCGACCGCCAT 61.804 63.158 0.00 0.00 34.36 4.40
1251 1476 1.068588 GCTCACGCCTATGATGTACCA 59.931 52.381 0.00 0.00 0.00 3.25
1291 1516 7.797038 AGTTAAAAGAGTATTCAACCGTTGT 57.203 32.000 11.01 0.00 0.00 3.32
1308 1533 6.523840 ACCGTTGTTACAACTTGAACCTATA 58.476 36.000 23.27 0.00 0.00 1.31
1309 1534 7.163441 ACCGTTGTTACAACTTGAACCTATAT 58.837 34.615 23.27 0.00 0.00 0.86
1310 1535 8.313292 ACCGTTGTTACAACTTGAACCTATATA 58.687 33.333 23.27 0.00 0.00 0.86
1311 1536 9.321562 CCGTTGTTACAACTTGAACCTATATAT 57.678 33.333 23.27 0.00 0.00 0.86
1346 1571 7.226918 TGGACACATTTGTTCTTTATTCGTACA 59.773 33.333 0.00 0.00 35.47 2.90
1452 1677 0.984230 TCTAAGGAGGCAGTGGTTGG 59.016 55.000 0.00 0.00 0.00 3.77
1503 1728 1.731720 AGAGCATCGTGAAAAGGAGC 58.268 50.000 0.00 0.00 42.67 4.70
1598 1825 2.042831 GCTTGCAAGGGCTCGTGAT 61.043 57.895 27.10 0.00 41.91 3.06
1616 1843 1.492176 GATGCCCAAGAGGAGGATGAA 59.508 52.381 0.00 0.00 38.24 2.57
1681 1911 4.524749 GCCTTCGTTCAAAAACTAGTCAC 58.475 43.478 0.00 0.00 32.95 3.67
1700 1930 5.093457 GTCACGAACTATGTCTTCGATTCA 58.907 41.667 7.50 0.00 42.57 2.57
1728 1958 2.674852 CTGTCATGAACCATGTCTTCGG 59.325 50.000 0.00 0.00 41.98 4.30
1734 1964 3.283751 TGAACCATGTCTTCGGTTTGTT 58.716 40.909 0.00 0.00 45.54 2.83
1797 2103 2.016318 TGTTGCTGTGACTTGACTTGG 58.984 47.619 0.00 0.00 0.00 3.61
1848 2163 2.464157 ACTCTGCTCTACTTTGCACC 57.536 50.000 0.00 0.00 35.20 5.01
1856 2171 0.249398 CTACTTTGCACCCTACCGCT 59.751 55.000 0.00 0.00 0.00 5.52
1863 2178 1.956629 GCACCCTACCGCTAGAAGCA 61.957 60.000 0.00 0.00 42.58 3.91
1864 2179 0.103208 CACCCTACCGCTAGAAGCAG 59.897 60.000 0.00 0.00 42.58 4.24
1916 2267 3.379445 CGTGGCGGTAGGGTGTCT 61.379 66.667 0.00 0.00 0.00 3.41
1923 2284 3.181430 TGGCGGTAGGGTGTCTATATGTA 60.181 47.826 0.00 0.00 0.00 2.29
1979 2340 2.742116 GGCCATCCTACCGCCAAGA 61.742 63.158 0.00 0.00 42.52 3.02
1992 2353 2.505557 CAAGACGGACGGCGGTAC 60.506 66.667 13.24 0.00 0.00 3.34
2020 2383 1.595882 CTACTGCCTGCTCTGCTGT 59.404 57.895 9.33 9.33 42.49 4.40
2022 2385 2.176314 TACTGCCTGCTCTGCTGTGG 62.176 60.000 12.76 0.00 40.48 4.17
2032 2395 1.004080 CTGCTGTGGGTCCTGTGAG 60.004 63.158 0.00 0.00 0.00 3.51
2060 2423 1.427819 CACATTTTCGGCGGTAGGC 59.572 57.895 7.21 0.00 42.51 3.93
2083 2584 4.814294 CACCCTACCGCCAGCGAC 62.814 72.222 14.67 0.00 42.83 5.19
2125 2647 1.418342 CTACGGTGACCAAATCGGCG 61.418 60.000 1.11 0.00 39.03 6.46
2132 2654 2.417239 GTGACCAAATCGGCGACATTTA 59.583 45.455 13.76 0.00 39.03 1.40
2135 2657 1.661617 CCAAATCGGCGACATTTACGA 59.338 47.619 13.76 0.00 39.85 3.43
2166 2688 3.797353 CACCCTACCGCCAGCCAT 61.797 66.667 0.00 0.00 0.00 4.40
2168 2690 3.164269 CCCTACCGCCAGCCATCT 61.164 66.667 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.933097 AGCAACATCGCGAGCTATTG 59.067 50.000 17.77 16.70 35.19 1.90
1 2 1.212616 GAGCAACATCGCGAGCTATT 58.787 50.000 19.01 5.91 37.48 1.73
2 3 0.598680 GGAGCAACATCGCGAGCTAT 60.599 55.000 19.01 0.00 37.48 2.97
3 4 1.226974 GGAGCAACATCGCGAGCTA 60.227 57.895 19.01 0.00 37.48 3.32
4 5 2.510238 GGAGCAACATCGCGAGCT 60.510 61.111 19.06 19.06 40.60 4.09
5 6 2.510238 AGGAGCAACATCGCGAGC 60.510 61.111 16.66 12.85 36.85 5.03
6 7 2.226896 CGAGGAGCAACATCGCGAG 61.227 63.158 16.66 9.51 45.10 5.03
7 8 2.202610 CGAGGAGCAACATCGCGA 60.203 61.111 13.09 13.09 45.10 5.87
11 12 8.798153 CAAAAATAATAAACGAGGAGCAACATC 58.202 33.333 0.00 0.00 0.00 3.06
12 13 8.519526 TCAAAAATAATAAACGAGGAGCAACAT 58.480 29.630 0.00 0.00 0.00 2.71
13 14 7.877003 TCAAAAATAATAAACGAGGAGCAACA 58.123 30.769 0.00 0.00 0.00 3.33
14 15 8.911247 ATCAAAAATAATAAACGAGGAGCAAC 57.089 30.769 0.00 0.00 0.00 4.17
60 61 7.977789 TCATTGCTACTAACATCTTTCAACA 57.022 32.000 0.00 0.00 0.00 3.33
91 92 6.069789 GGATAATCCTCAGATCATGGATCCAA 60.070 42.308 20.67 2.92 39.43 3.53
128 129 8.795513 TGGTGCATCAAGGACATAATTATTATG 58.204 33.333 19.81 19.81 46.56 1.90
130 131 7.998383 AGTGGTGCATCAAGGACATAATTATTA 59.002 33.333 0.00 0.00 40.89 0.98
133 134 5.754782 AGTGGTGCATCAAGGACATAATTA 58.245 37.500 0.00 0.00 40.89 1.40
134 135 4.603131 AGTGGTGCATCAAGGACATAATT 58.397 39.130 0.00 0.00 40.89 1.40
139 140 1.278985 CCTAGTGGTGCATCAAGGACA 59.721 52.381 11.72 0.00 40.89 4.02
140 141 1.279271 ACCTAGTGGTGCATCAAGGAC 59.721 52.381 22.06 0.82 46.51 3.85
153 154 3.179830 GCAATACGTCTGTCACCTAGTG 58.820 50.000 0.00 0.00 34.45 2.74
154 155 2.159421 CGCAATACGTCTGTCACCTAGT 60.159 50.000 0.00 0.00 36.87 2.57
161 162 0.172803 ACTCCCGCAATACGTCTGTC 59.827 55.000 0.00 0.00 41.42 3.51
165 166 2.662700 CATCTACTCCCGCAATACGTC 58.337 52.381 0.00 0.00 41.42 4.34
168 169 2.035961 TCTGCATCTACTCCCGCAATAC 59.964 50.000 0.00 0.00 33.21 1.89
169 170 2.035961 GTCTGCATCTACTCCCGCAATA 59.964 50.000 0.00 0.00 33.21 1.90
170 171 1.123077 TCTGCATCTACTCCCGCAAT 58.877 50.000 0.00 0.00 33.21 3.56
171 172 0.175760 GTCTGCATCTACTCCCGCAA 59.824 55.000 0.00 0.00 33.21 4.85
173 174 0.390860 ATGTCTGCATCTACTCCCGC 59.609 55.000 0.00 0.00 0.00 6.13
175 176 5.474578 TCATAATGTCTGCATCTACTCCC 57.525 43.478 0.00 0.00 33.50 4.30
180 181 6.037062 CCAAACGTTCATAATGTCTGCATCTA 59.963 38.462 0.00 0.00 33.50 1.98
182 183 5.030295 CCAAACGTTCATAATGTCTGCATC 58.970 41.667 0.00 0.00 33.50 3.91
183 184 4.458989 ACCAAACGTTCATAATGTCTGCAT 59.541 37.500 0.00 0.00 36.80 3.96
184 185 3.818210 ACCAAACGTTCATAATGTCTGCA 59.182 39.130 0.00 0.00 0.00 4.41
185 186 4.419522 ACCAAACGTTCATAATGTCTGC 57.580 40.909 0.00 0.00 0.00 4.26
188 189 6.128391 TGAGCTAACCAAACGTTCATAATGTC 60.128 38.462 0.00 0.00 35.79 3.06
190 191 6.176975 TGAGCTAACCAAACGTTCATAATG 57.823 37.500 0.00 0.00 35.79 1.90
191 192 6.811253 TTGAGCTAACCAAACGTTCATAAT 57.189 33.333 0.00 0.00 35.79 1.28
194 195 6.597672 TCATATTGAGCTAACCAAACGTTCAT 59.402 34.615 0.00 0.00 35.79 2.57
198 199 6.037172 GTCATCATATTGAGCTAACCAAACGT 59.963 38.462 0.00 0.00 0.00 3.99
200 201 7.559590 AGTCATCATATTGAGCTAACCAAAC 57.440 36.000 0.00 0.00 0.00 2.93
201 202 8.486210 AGTAGTCATCATATTGAGCTAACCAAA 58.514 33.333 0.00 0.00 0.00 3.28
202 203 8.023021 AGTAGTCATCATATTGAGCTAACCAA 57.977 34.615 0.00 0.00 0.00 3.67
208 209 9.087871 ACTATCAAGTAGTCATCATATTGAGCT 57.912 33.333 0.00 0.00 39.46 4.09
209 210 9.703892 AACTATCAAGTAGTCATCATATTGAGC 57.296 33.333 0.00 0.00 42.83 4.26
215 216 9.967346 GCACTAAACTATCAAGTAGTCATCATA 57.033 33.333 0.00 0.00 42.83 2.15
216 217 8.478066 TGCACTAAACTATCAAGTAGTCATCAT 58.522 33.333 0.00 0.00 42.83 2.45
251 252 4.934356 TGAAGTCCCAATTCTAAGCCATT 58.066 39.130 0.00 0.00 0.00 3.16
263 264 6.337356 GTTCAAAATGTCTTTGAAGTCCCAA 58.663 36.000 11.79 0.00 45.58 4.12
264 265 5.449862 CGTTCAAAATGTCTTTGAAGTCCCA 60.450 40.000 11.79 0.00 45.58 4.37
265 266 4.976116 CGTTCAAAATGTCTTTGAAGTCCC 59.024 41.667 11.79 1.96 45.58 4.46
275 276 3.502211 GGTCCATGACGTTCAAAATGTCT 59.498 43.478 11.98 0.00 45.51 3.41
279 280 5.885352 TCATATGGTCCATGACGTTCAAAAT 59.115 36.000 15.10 0.00 32.65 1.82
296 297 4.970860 ACTCCTGGAACATCTCATATGG 57.029 45.455 2.13 0.00 38.20 2.74
341 342 4.282496 ACTTCATATCTCTCAACTCGGGT 58.718 43.478 0.00 0.00 0.00 5.28
347 348 6.634805 TGTTGGAGACTTCATATCTCTCAAC 58.365 40.000 18.97 18.97 44.36 3.18
351 352 6.865834 ACTTGTTGGAGACTTCATATCTCT 57.134 37.500 2.30 0.00 42.02 3.10
352 353 7.327214 AGAACTTGTTGGAGACTTCATATCTC 58.673 38.462 0.00 0.00 41.68 2.75
353 354 7.251321 AGAACTTGTTGGAGACTTCATATCT 57.749 36.000 0.00 0.00 0.00 1.98
356 357 8.198109 GCTATAGAACTTGTTGGAGACTTCATA 58.802 37.037 3.21 0.00 0.00 2.15
357 358 7.044798 GCTATAGAACTTGTTGGAGACTTCAT 58.955 38.462 3.21 0.00 0.00 2.57
358 359 6.211584 AGCTATAGAACTTGTTGGAGACTTCA 59.788 38.462 3.21 0.00 0.00 3.02
359 360 6.635755 AGCTATAGAACTTGTTGGAGACTTC 58.364 40.000 3.21 0.00 0.00 3.01
360 361 6.613153 AGCTATAGAACTTGTTGGAGACTT 57.387 37.500 3.21 0.00 0.00 3.01
361 362 7.719871 TTAGCTATAGAACTTGTTGGAGACT 57.280 36.000 3.21 0.00 0.00 3.24
362 363 8.773404 TTTTAGCTATAGAACTTGTTGGAGAC 57.227 34.615 3.21 0.00 0.00 3.36
363 364 8.812972 TCTTTTAGCTATAGAACTTGTTGGAGA 58.187 33.333 3.21 0.00 0.00 3.71
364 365 9.606631 ATCTTTTAGCTATAGAACTTGTTGGAG 57.393 33.333 3.21 0.00 0.00 3.86
365 366 9.383519 CATCTTTTAGCTATAGAACTTGTTGGA 57.616 33.333 3.21 0.00 0.00 3.53
366 367 8.616076 CCATCTTTTAGCTATAGAACTTGTTGG 58.384 37.037 3.21 8.00 0.00 3.77
367 368 9.383519 TCCATCTTTTAGCTATAGAACTTGTTG 57.616 33.333 3.21 3.92 0.00 3.33
368 369 9.606631 CTCCATCTTTTAGCTATAGAACTTGTT 57.393 33.333 3.21 0.00 0.00 2.83
369 370 8.207545 CCTCCATCTTTTAGCTATAGAACTTGT 58.792 37.037 3.21 0.00 0.00 3.16
370 371 8.424918 TCCTCCATCTTTTAGCTATAGAACTTG 58.575 37.037 3.21 5.00 0.00 3.16
371 372 8.554490 TCCTCCATCTTTTAGCTATAGAACTT 57.446 34.615 3.21 0.00 0.00 2.66
372 373 8.007742 TCTCCTCCATCTTTTAGCTATAGAACT 58.992 37.037 3.21 0.00 0.00 3.01
373 374 8.184304 TCTCCTCCATCTTTTAGCTATAGAAC 57.816 38.462 3.21 0.00 0.00 3.01
374 375 8.783660 TTCTCCTCCATCTTTTAGCTATAGAA 57.216 34.615 3.21 0.00 0.00 2.10
375 376 8.964533 ATTCTCCTCCATCTTTTAGCTATAGA 57.035 34.615 3.21 8.14 0.00 1.98
377 378 8.754080 GCTATTCTCCTCCATCTTTTAGCTATA 58.246 37.037 0.00 0.00 0.00 1.31
378 379 7.457535 AGCTATTCTCCTCCATCTTTTAGCTAT 59.542 37.037 0.00 0.00 38.38 2.97
379 380 6.784969 AGCTATTCTCCTCCATCTTTTAGCTA 59.215 38.462 0.00 0.00 38.38 3.32
380 381 5.606329 AGCTATTCTCCTCCATCTTTTAGCT 59.394 40.000 0.00 0.00 36.09 3.32
381 382 5.863965 AGCTATTCTCCTCCATCTTTTAGC 58.136 41.667 0.00 0.00 0.00 3.09
382 383 7.060383 TGAGCTATTCTCCTCCATCTTTTAG 57.940 40.000 0.00 0.00 41.18 1.85
383 384 7.437713 TTGAGCTATTCTCCTCCATCTTTTA 57.562 36.000 0.00 0.00 41.18 1.52
384 385 5.965033 TGAGCTATTCTCCTCCATCTTTT 57.035 39.130 0.00 0.00 41.18 2.27
385 386 5.687177 GCTTGAGCTATTCTCCTCCATCTTT 60.687 44.000 0.00 0.00 41.18 2.52
386 387 4.202346 GCTTGAGCTATTCTCCTCCATCTT 60.202 45.833 0.00 0.00 41.18 2.40
387 388 3.324556 GCTTGAGCTATTCTCCTCCATCT 59.675 47.826 0.00 0.00 41.18 2.90
388 389 3.070734 TGCTTGAGCTATTCTCCTCCATC 59.929 47.826 4.44 0.00 41.18 3.51
389 390 3.044156 TGCTTGAGCTATTCTCCTCCAT 58.956 45.455 4.44 0.00 41.18 3.41
390 391 2.433604 CTGCTTGAGCTATTCTCCTCCA 59.566 50.000 4.44 0.00 41.18 3.86
391 392 2.433970 ACTGCTTGAGCTATTCTCCTCC 59.566 50.000 4.44 0.00 41.18 4.30
392 393 3.131933 TCACTGCTTGAGCTATTCTCCTC 59.868 47.826 4.44 0.00 41.18 3.71
393 394 3.102972 TCACTGCTTGAGCTATTCTCCT 58.897 45.455 4.44 0.00 41.18 3.69
394 395 3.456280 CTCACTGCTTGAGCTATTCTCC 58.544 50.000 4.44 0.00 45.51 3.71
404 405 2.250646 GCACATGCTCACTGCTTGA 58.749 52.632 9.85 0.00 46.07 3.02
415 416 2.357009 CCCAGACAATCTAAGCACATGC 59.643 50.000 0.00 0.00 42.49 4.06
416 417 3.614092 ACCCAGACAATCTAAGCACATG 58.386 45.455 0.00 0.00 0.00 3.21
417 418 4.471386 AGTACCCAGACAATCTAAGCACAT 59.529 41.667 0.00 0.00 0.00 3.21
418 419 3.838317 AGTACCCAGACAATCTAAGCACA 59.162 43.478 0.00 0.00 0.00 4.57
419 420 4.473477 AGTACCCAGACAATCTAAGCAC 57.527 45.455 0.00 0.00 0.00 4.40
420 421 5.020795 TGTAGTACCCAGACAATCTAAGCA 58.979 41.667 0.00 0.00 0.00 3.91
421 422 5.593679 TGTAGTACCCAGACAATCTAAGC 57.406 43.478 0.00 0.00 0.00 3.09
427 428 6.013725 TCAAGTGATTGTAGTACCCAGACAAT 60.014 38.462 10.94 10.94 44.43 2.71
428 429 5.305902 TCAAGTGATTGTAGTACCCAGACAA 59.694 40.000 0.00 0.00 37.47 3.18
429 430 4.836175 TCAAGTGATTGTAGTACCCAGACA 59.164 41.667 0.00 0.00 0.00 3.41
430 431 5.401531 TCAAGTGATTGTAGTACCCAGAC 57.598 43.478 0.00 0.00 0.00 3.51
431 432 6.212589 TGATTCAAGTGATTGTAGTACCCAGA 59.787 38.462 0.00 0.00 0.00 3.86
432 433 6.406370 TGATTCAAGTGATTGTAGTACCCAG 58.594 40.000 0.00 0.00 0.00 4.45
433 434 6.367374 TGATTCAAGTGATTGTAGTACCCA 57.633 37.500 0.00 0.00 0.00 4.51
434 435 7.308782 CTTGATTCAAGTGATTGTAGTACCC 57.691 40.000 16.71 0.00 36.79 3.69
448 449 7.315890 GGAAATTAACTCCCACTTGATTCAAG 58.684 38.462 22.00 22.00 45.85 3.02
449 450 7.227049 GGAAATTAACTCCCACTTGATTCAA 57.773 36.000 0.00 0.00 0.00 2.69
450 451 6.834168 GGAAATTAACTCCCACTTGATTCA 57.166 37.500 0.00 0.00 0.00 2.57
461 462 1.743394 CACGGCTGGGAAATTAACTCC 59.257 52.381 0.00 0.00 0.00 3.85
462 463 2.161609 CACACGGCTGGGAAATTAACTC 59.838 50.000 0.00 0.00 0.00 3.01
463 464 2.159382 CACACGGCTGGGAAATTAACT 58.841 47.619 0.00 0.00 0.00 2.24
464 465 1.402325 GCACACGGCTGGGAAATTAAC 60.402 52.381 0.00 0.00 40.25 2.01
465 466 0.885196 GCACACGGCTGGGAAATTAA 59.115 50.000 0.00 0.00 40.25 1.40
466 467 1.302383 CGCACACGGCTGGGAAATTA 61.302 55.000 0.00 0.00 41.67 1.40
467 468 2.625823 CGCACACGGCTGGGAAATT 61.626 57.895 0.00 0.00 41.67 1.82
468 469 3.055719 CGCACACGGCTGGGAAAT 61.056 61.111 0.00 0.00 41.67 2.17
490 491 0.478507 GTGGAATATGGTGGAGGGGG 59.521 60.000 0.00 0.00 0.00 5.40
491 492 0.478507 GGTGGAATATGGTGGAGGGG 59.521 60.000 0.00 0.00 0.00 4.79
492 493 1.421646 GAGGTGGAATATGGTGGAGGG 59.578 57.143 0.00 0.00 0.00 4.30
493 494 1.070758 CGAGGTGGAATATGGTGGAGG 59.929 57.143 0.00 0.00 0.00 4.30
494 495 1.070758 CCGAGGTGGAATATGGTGGAG 59.929 57.143 0.00 0.00 42.00 3.86
495 496 1.128200 CCGAGGTGGAATATGGTGGA 58.872 55.000 0.00 0.00 42.00 4.02
496 497 0.837272 ACCGAGGTGGAATATGGTGG 59.163 55.000 0.00 0.00 42.00 4.61
497 498 1.484653 TGACCGAGGTGGAATATGGTG 59.515 52.381 0.00 0.00 42.00 4.17
498 499 1.874129 TGACCGAGGTGGAATATGGT 58.126 50.000 0.00 0.00 42.00 3.55
499 500 4.678044 CGATATGACCGAGGTGGAATATGG 60.678 50.000 0.00 0.00 42.00 2.74
500 501 4.082190 ACGATATGACCGAGGTGGAATATG 60.082 45.833 0.00 0.30 42.00 1.78
501 502 4.087182 ACGATATGACCGAGGTGGAATAT 58.913 43.478 0.00 0.85 42.00 1.28
502 503 3.493334 ACGATATGACCGAGGTGGAATA 58.507 45.455 0.00 0.00 42.00 1.75
503 504 2.317040 ACGATATGACCGAGGTGGAAT 58.683 47.619 0.00 0.00 42.00 3.01
504 505 1.771565 ACGATATGACCGAGGTGGAA 58.228 50.000 0.00 0.00 42.00 3.53
505 506 2.501261 CTACGATATGACCGAGGTGGA 58.499 52.381 0.00 0.00 42.00 4.02
506 507 1.068472 GCTACGATATGACCGAGGTGG 60.068 57.143 0.00 0.00 46.41 4.61
507 508 1.399855 CGCTACGATATGACCGAGGTG 60.400 57.143 0.00 0.00 0.00 4.00
508 509 0.873054 CGCTACGATATGACCGAGGT 59.127 55.000 0.00 0.00 0.00 3.85
509 510 0.168348 CCGCTACGATATGACCGAGG 59.832 60.000 0.00 0.00 0.00 4.63
510 511 0.873054 ACCGCTACGATATGACCGAG 59.127 55.000 0.00 0.00 0.00 4.63
511 512 0.589708 CACCGCTACGATATGACCGA 59.410 55.000 0.00 0.00 0.00 4.69
512 513 1.002250 GCACCGCTACGATATGACCG 61.002 60.000 0.00 0.00 0.00 4.79
513 514 0.314302 AGCACCGCTACGATATGACC 59.686 55.000 0.00 0.00 36.99 4.02
514 515 2.135664 AAGCACCGCTACGATATGAC 57.864 50.000 0.00 0.00 38.25 3.06
515 516 2.228103 CCTAAGCACCGCTACGATATGA 59.772 50.000 0.00 0.00 38.25 2.15
516 517 2.596452 CCTAAGCACCGCTACGATATG 58.404 52.381 0.00 0.00 38.25 1.78
517 518 1.067776 GCCTAAGCACCGCTACGATAT 60.068 52.381 0.00 0.00 38.25 1.63
518 519 0.313043 GCCTAAGCACCGCTACGATA 59.687 55.000 0.00 0.00 38.25 2.92
519 520 1.067582 GCCTAAGCACCGCTACGAT 59.932 57.895 0.00 0.00 38.25 3.73
520 521 2.344981 TGCCTAAGCACCGCTACGA 61.345 57.895 0.00 0.00 46.52 3.43
521 522 2.183300 TGCCTAAGCACCGCTACG 59.817 61.111 0.00 0.00 46.52 3.51
531 532 0.723981 GACGCAGAGCTTTGCCTAAG 59.276 55.000 22.33 11.40 41.01 2.18
532 533 1.014044 CGACGCAGAGCTTTGCCTAA 61.014 55.000 22.33 0.00 41.01 2.69
533 534 1.446099 CGACGCAGAGCTTTGCCTA 60.446 57.895 22.33 0.00 41.01 3.93
534 535 2.740055 CGACGCAGAGCTTTGCCT 60.740 61.111 22.33 11.88 41.01 4.75
535 536 3.793144 CCGACGCAGAGCTTTGCC 61.793 66.667 22.33 9.28 41.01 4.52
536 537 1.687494 CTACCGACGCAGAGCTTTGC 61.687 60.000 18.90 18.90 40.67 3.68
537 538 1.687494 GCTACCGACGCAGAGCTTTG 61.687 60.000 0.00 0.00 32.04 2.77
538 539 1.446272 GCTACCGACGCAGAGCTTT 60.446 57.895 6.61 0.00 32.04 3.51
539 540 2.154798 TTGCTACCGACGCAGAGCTT 62.155 55.000 12.94 0.00 38.80 3.74
540 541 2.636412 TTGCTACCGACGCAGAGCT 61.636 57.895 12.94 0.00 38.80 4.09
541 542 2.126071 TTGCTACCGACGCAGAGC 60.126 61.111 6.85 6.85 38.80 4.09
542 543 0.458543 ATGTTGCTACCGACGCAGAG 60.459 55.000 0.00 0.00 38.80 3.35
543 544 0.457853 GATGTTGCTACCGACGCAGA 60.458 55.000 0.00 0.00 38.80 4.26
544 545 0.735978 TGATGTTGCTACCGACGCAG 60.736 55.000 0.00 0.00 38.80 5.18
545 546 0.108377 ATGATGTTGCTACCGACGCA 60.108 50.000 0.00 0.00 35.22 5.24
546 547 0.577269 GATGATGTTGCTACCGACGC 59.423 55.000 0.00 0.00 0.00 5.19
547 548 1.588404 GTGATGATGTTGCTACCGACG 59.412 52.381 0.00 0.00 0.00 5.12
548 549 1.933853 GGTGATGATGTTGCTACCGAC 59.066 52.381 0.00 0.00 0.00 4.79
549 550 2.309528 GGTGATGATGTTGCTACCGA 57.690 50.000 0.00 0.00 0.00 4.69
550 551 0.930310 CGGTGATGATGTTGCTACCG 59.070 55.000 0.00 0.00 43.93 4.02
551 552 1.933853 GACGGTGATGATGTTGCTACC 59.066 52.381 0.00 0.00 0.00 3.18
552 553 2.616960 TGACGGTGATGATGTTGCTAC 58.383 47.619 0.00 0.00 0.00 3.58
553 554 3.118811 TGATGACGGTGATGATGTTGCTA 60.119 43.478 0.00 0.00 0.00 3.49
554 555 2.283298 GATGACGGTGATGATGTTGCT 58.717 47.619 0.00 0.00 0.00 3.91
555 556 2.009051 TGATGACGGTGATGATGTTGC 58.991 47.619 0.00 0.00 0.00 4.17
556 557 2.029606 CGTGATGACGGTGATGATGTTG 59.970 50.000 0.00 0.00 42.18 3.33
557 558 2.270923 CGTGATGACGGTGATGATGTT 58.729 47.619 0.00 0.00 42.18 2.71
558 559 1.926561 CGTGATGACGGTGATGATGT 58.073 50.000 0.00 0.00 42.18 3.06
559 560 0.578683 GCGTGATGACGGTGATGATG 59.421 55.000 6.88 0.00 46.20 3.07
560 561 0.530650 GGCGTGATGACGGTGATGAT 60.531 55.000 6.88 0.00 46.20 2.45
561 562 1.153647 GGCGTGATGACGGTGATGA 60.154 57.895 6.88 0.00 46.20 2.92
562 563 3.398920 GGCGTGATGACGGTGATG 58.601 61.111 6.88 0.00 46.20 3.07
582 583 1.444553 GGAGAGTTCCGTCAGCACG 60.445 63.158 0.00 0.00 46.29 5.34
583 584 1.079750 GGGAGAGTTCCGTCAGCAC 60.080 63.158 0.00 0.00 45.04 4.40
584 585 2.636412 CGGGAGAGTTCCGTCAGCA 61.636 63.158 0.00 0.00 45.04 4.41
585 586 2.182030 CGGGAGAGTTCCGTCAGC 59.818 66.667 0.00 0.00 45.04 4.26
591 592 0.108567 GAGCTTCACGGGAGAGTTCC 60.109 60.000 0.00 0.00 43.23 3.62
592 593 0.892063 AGAGCTTCACGGGAGAGTTC 59.108 55.000 5.87 5.87 0.00 3.01
593 594 0.605589 CAGAGCTTCACGGGAGAGTT 59.394 55.000 0.00 0.00 0.00 3.01
594 595 1.882989 GCAGAGCTTCACGGGAGAGT 61.883 60.000 0.00 0.00 0.00 3.24
595 596 1.153667 GCAGAGCTTCACGGGAGAG 60.154 63.158 0.00 0.00 0.00 3.20
596 597 1.607756 AGCAGAGCTTCACGGGAGA 60.608 57.895 0.00 0.00 33.89 3.71
597 598 1.447489 CAGCAGAGCTTCACGGGAG 60.447 63.158 0.00 0.00 36.40 4.30
598 599 2.659016 CAGCAGAGCTTCACGGGA 59.341 61.111 0.00 0.00 36.40 5.14
599 600 2.249413 ATCCAGCAGAGCTTCACGGG 62.249 60.000 0.00 0.00 36.40 5.28
600 601 0.809241 GATCCAGCAGAGCTTCACGG 60.809 60.000 0.00 0.00 36.40 4.94
601 602 1.144565 CGATCCAGCAGAGCTTCACG 61.145 60.000 0.00 0.00 36.40 4.35
602 603 0.809241 CCGATCCAGCAGAGCTTCAC 60.809 60.000 0.00 0.00 36.40 3.18
603 604 0.972471 TCCGATCCAGCAGAGCTTCA 60.972 55.000 0.00 0.00 36.40 3.02
604 605 0.249405 CTCCGATCCAGCAGAGCTTC 60.249 60.000 0.00 0.00 36.40 3.86
605 606 0.975040 ACTCCGATCCAGCAGAGCTT 60.975 55.000 0.00 0.00 36.40 3.74
606 607 0.975040 AACTCCGATCCAGCAGAGCT 60.975 55.000 0.00 0.00 40.77 4.09
607 608 0.529555 GAACTCCGATCCAGCAGAGC 60.530 60.000 0.00 0.00 0.00 4.09
608 609 0.248825 CGAACTCCGATCCAGCAGAG 60.249 60.000 0.00 0.00 41.76 3.35
609 610 1.809869 CGAACTCCGATCCAGCAGA 59.190 57.895 0.00 0.00 41.76 4.26
610 611 1.880340 GCGAACTCCGATCCAGCAG 60.880 63.158 0.00 0.00 41.76 4.24
611 612 2.184322 GCGAACTCCGATCCAGCA 59.816 61.111 0.00 0.00 41.76 4.41
612 613 2.956964 CGCGAACTCCGATCCAGC 60.957 66.667 0.00 0.00 41.76 4.85
613 614 2.278857 CCGCGAACTCCGATCCAG 60.279 66.667 8.23 0.00 41.76 3.86
614 615 3.833645 CCCGCGAACTCCGATCCA 61.834 66.667 8.23 0.00 41.76 3.41
615 616 3.524606 TCCCGCGAACTCCGATCC 61.525 66.667 8.23 0.00 41.76 3.36
616 617 2.278661 GTCCCGCGAACTCCGATC 60.279 66.667 8.23 0.00 41.76 3.69
617 618 4.189188 CGTCCCGCGAACTCCGAT 62.189 66.667 8.23 0.00 44.77 4.18
619 620 2.603135 ATTACGTCCCGCGAACTCCG 62.603 60.000 8.23 4.78 44.77 4.63
620 621 0.869028 GATTACGTCCCGCGAACTCC 60.869 60.000 8.23 0.00 44.77 3.85
621 622 1.198608 CGATTACGTCCCGCGAACTC 61.199 60.000 8.23 0.00 44.77 3.01
622 623 1.226491 CGATTACGTCCCGCGAACT 60.226 57.895 8.23 0.00 44.77 3.01
623 624 1.198608 CTCGATTACGTCCCGCGAAC 61.199 60.000 8.23 4.32 44.77 3.95
624 625 1.063006 CTCGATTACGTCCCGCGAA 59.937 57.895 8.23 0.00 44.77 4.70
625 626 2.711311 CTCGATTACGTCCCGCGA 59.289 61.111 8.23 0.00 44.77 5.87
627 628 1.944676 CAGCTCGATTACGTCCCGC 60.945 63.158 0.00 0.00 40.69 6.13
628 629 0.099968 TTCAGCTCGATTACGTCCCG 59.900 55.000 0.00 0.00 40.69 5.14
629 630 1.557651 GTTCAGCTCGATTACGTCCC 58.442 55.000 0.00 0.00 40.69 4.46
630 631 1.189403 CGTTCAGCTCGATTACGTCC 58.811 55.000 0.00 0.00 40.69 4.79
631 632 1.578023 CACGTTCAGCTCGATTACGTC 59.422 52.381 10.87 0.00 38.66 4.34
632 633 1.068748 ACACGTTCAGCTCGATTACGT 60.069 47.619 0.00 5.49 40.77 3.57
633 634 1.317611 CACACGTTCAGCTCGATTACG 59.682 52.381 0.00 4.93 41.26 3.18
634 635 1.059264 GCACACGTTCAGCTCGATTAC 59.941 52.381 0.00 0.00 0.00 1.89
635 636 1.067846 AGCACACGTTCAGCTCGATTA 60.068 47.619 0.00 0.00 32.05 1.75
636 637 0.319900 AGCACACGTTCAGCTCGATT 60.320 50.000 0.00 0.00 32.05 3.34
637 638 1.010935 CAGCACACGTTCAGCTCGAT 61.011 55.000 3.38 0.00 36.26 3.59
638 639 1.661509 CAGCACACGTTCAGCTCGA 60.662 57.895 3.38 0.00 36.26 4.04
639 640 1.215014 TTCAGCACACGTTCAGCTCG 61.215 55.000 3.38 0.00 36.26 5.03
640 641 0.233332 GTTCAGCACACGTTCAGCTC 59.767 55.000 3.38 0.00 36.26 4.09
641 642 0.179073 AGTTCAGCACACGTTCAGCT 60.179 50.000 0.64 0.64 39.63 4.24
642 643 0.233332 GAGTTCAGCACACGTTCAGC 59.767 55.000 0.00 0.00 0.00 4.26
643 644 0.504384 CGAGTTCAGCACACGTTCAG 59.496 55.000 0.00 0.00 35.01 3.02
644 645 0.874175 CCGAGTTCAGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
645 646 0.596600 TCCGAGTTCAGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
646 647 0.597637 CTCCGAGTTCAGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
647 648 1.007271 CTCCGAGTTCAGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
648 649 1.734477 CCTCCGAGTTCAGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
649 650 0.946221 CACCTCCGAGTTCAGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
650 651 1.367471 CACCTCCGAGTTCAGCACA 59.633 57.895 0.00 0.00 0.00 4.57
651 652 2.029844 GCACCTCCGAGTTCAGCAC 61.030 63.158 0.00 0.00 0.00 4.40
652 653 2.343758 GCACCTCCGAGTTCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
653 654 2.435059 GGCACCTCCGAGTTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
662 663 2.030958 CCAAACGTACGGCACCTCC 61.031 63.158 21.06 0.00 0.00 4.30
663 664 0.038343 TACCAAACGTACGGCACCTC 60.038 55.000 21.06 0.00 0.00 3.85
664 665 0.319813 GTACCAAACGTACGGCACCT 60.320 55.000 21.06 1.22 38.17 4.00
665 666 2.153039 GTACCAAACGTACGGCACC 58.847 57.895 21.06 0.00 38.17 5.01
671 672 2.925563 CCGATCCAAGTACCAAACGTAC 59.074 50.000 0.00 0.00 46.69 3.67
672 673 2.562298 ACCGATCCAAGTACCAAACGTA 59.438 45.455 0.00 0.00 0.00 3.57
673 674 1.345415 ACCGATCCAAGTACCAAACGT 59.655 47.619 0.00 0.00 0.00 3.99
674 675 1.997606 GACCGATCCAAGTACCAAACG 59.002 52.381 0.00 0.00 0.00 3.60
675 676 1.997606 CGACCGATCCAAGTACCAAAC 59.002 52.381 0.00 0.00 0.00 2.93
676 677 1.066716 CCGACCGATCCAAGTACCAAA 60.067 52.381 0.00 0.00 0.00 3.28
677 678 0.533491 CCGACCGATCCAAGTACCAA 59.467 55.000 0.00 0.00 0.00 3.67
678 679 0.323633 TCCGACCGATCCAAGTACCA 60.324 55.000 0.00 0.00 0.00 3.25
679 680 1.000496 GATCCGACCGATCCAAGTACC 60.000 57.143 0.00 0.00 41.51 3.34
680 681 1.334779 CGATCCGACCGATCCAAGTAC 60.335 57.143 0.00 0.00 44.07 2.73
681 682 0.949397 CGATCCGACCGATCCAAGTA 59.051 55.000 0.00 0.00 44.07 2.24
682 683 1.035932 ACGATCCGACCGATCCAAGT 61.036 55.000 0.00 0.00 44.07 3.16
683 684 0.595053 CACGATCCGACCGATCCAAG 60.595 60.000 0.00 0.00 44.07 3.61
684 685 1.033202 TCACGATCCGACCGATCCAA 61.033 55.000 0.00 0.00 44.07 3.53
685 686 1.033202 TTCACGATCCGACCGATCCA 61.033 55.000 0.00 0.00 44.07 3.41
686 687 0.317938 CTTCACGATCCGACCGATCC 60.318 60.000 0.00 0.00 44.07 3.36
687 688 0.661552 TCTTCACGATCCGACCGATC 59.338 55.000 0.00 0.00 43.58 3.69
688 689 1.001268 CATCTTCACGATCCGACCGAT 60.001 52.381 0.00 0.00 0.00 4.18
689 690 0.380733 CATCTTCACGATCCGACCGA 59.619 55.000 0.00 0.00 0.00 4.69
690 691 0.100682 ACATCTTCACGATCCGACCG 59.899 55.000 0.00 0.00 0.00 4.79
691 692 2.728922 GTACATCTTCACGATCCGACC 58.271 52.381 0.00 0.00 0.00 4.79
692 693 2.031314 TCGTACATCTTCACGATCCGAC 59.969 50.000 0.00 0.00 41.89 4.79
693 694 2.282407 TCGTACATCTTCACGATCCGA 58.718 47.619 0.00 0.00 41.89 4.55
694 695 2.750301 TCGTACATCTTCACGATCCG 57.250 50.000 0.00 0.00 41.89 4.18
695 696 5.277876 ATGTAGTCGTACATCTTCACGATCC 60.278 44.000 0.00 0.00 45.20 3.36
696 697 5.749620 ATGTAGTCGTACATCTTCACGATC 58.250 41.667 0.00 0.00 45.20 3.69
697 698 5.752892 ATGTAGTCGTACATCTTCACGAT 57.247 39.130 0.00 0.00 45.20 3.73
707 708 1.466192 CGCGGTTGATGTAGTCGTACA 60.466 52.381 0.00 0.00 43.43 2.90
708 709 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
709 710 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
710 711 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
711 712 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
712 713 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
713 714 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
714 715 0.179225 GCACAACGCGGTTGATGTAG 60.179 55.000 22.26 1.41 45.28 2.74
715 716 0.601576 AGCACAACGCGGTTGATGTA 60.602 50.000 22.26 0.00 45.28 2.29
716 717 0.601576 TAGCACAACGCGGTTGATGT 60.602 50.000 22.26 11.72 45.28 3.06
717 718 0.515127 TTAGCACAACGCGGTTGATG 59.485 50.000 22.26 17.39 45.28 3.07
718 719 0.515564 GTTAGCACAACGCGGTTGAT 59.484 50.000 22.26 13.46 45.28 2.57
719 720 1.823260 CGTTAGCACAACGCGGTTGA 61.823 55.000 22.26 3.38 45.28 3.18
739 740 1.993370 CTCGTAGACCAAAAGCGGAAG 59.007 52.381 0.00 0.00 0.00 3.46
740 741 1.337447 CCTCGTAGACCAAAAGCGGAA 60.337 52.381 0.00 0.00 0.00 4.30
741 742 0.245539 CCTCGTAGACCAAAAGCGGA 59.754 55.000 0.00 0.00 0.00 5.54
742 743 0.739813 CCCTCGTAGACCAAAAGCGG 60.740 60.000 0.00 0.00 0.00 5.52
743 744 0.037605 ACCCTCGTAGACCAAAAGCG 60.038 55.000 0.00 0.00 0.00 4.68
744 745 2.614779 GTACCCTCGTAGACCAAAAGC 58.385 52.381 0.00 0.00 0.00 3.51
745 746 2.229784 ACGTACCCTCGTAGACCAAAAG 59.770 50.000 0.00 0.00 42.35 2.27
746 747 2.030007 CACGTACCCTCGTAGACCAAAA 60.030 50.000 0.00 0.00 42.27 2.44
747 748 1.541147 CACGTACCCTCGTAGACCAAA 59.459 52.381 0.00 0.00 42.27 3.28
748 749 1.167851 CACGTACCCTCGTAGACCAA 58.832 55.000 0.00 0.00 42.27 3.67
749 750 0.677731 CCACGTACCCTCGTAGACCA 60.678 60.000 0.00 0.00 42.27 4.02
750 751 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
751 752 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
752 753 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
753 754 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
754 755 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
755 756 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
756 757 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
757 758 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
758 759 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
759 760 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
760 761 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
761 762 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
762 763 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
763 764 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
764 765 1.878656 GAGGGGAGAGTGTGTCCACG 61.879 65.000 0.00 0.00 46.56 4.94
765 766 0.543174 AGAGGGGAGAGTGTGTCCAC 60.543 60.000 0.00 0.00 42.17 4.02
766 767 0.251832 GAGAGGGGAGAGTGTGTCCA 60.252 60.000 0.00 0.00 35.57 4.02
767 768 1.316706 CGAGAGGGGAGAGTGTGTCC 61.317 65.000 0.00 0.00 0.00 4.02
768 769 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
769 770 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
770 771 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
771 772 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
772 773 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
773 774 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
774 775 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
775 776 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
776 777 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
777 778 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
778 779 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
779 780 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
780 781 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
781 782 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
782 783 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
783 784 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
784 785 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
785 786 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
786 787 3.057736 GGATCATGGTGATGCATAGCAAC 60.058 47.826 0.00 0.00 43.55 4.17
787 788 3.151554 GGATCATGGTGATGCATAGCAA 58.848 45.455 0.00 0.00 43.55 3.91
788 789 2.374170 AGGATCATGGTGATGCATAGCA 59.626 45.455 12.83 4.86 46.03 3.49
789 790 2.747989 CAGGATCATGGTGATGCATAGC 59.252 50.000 12.83 0.00 46.03 2.97
790 791 3.751698 CACAGGATCATGGTGATGCATAG 59.248 47.826 12.66 5.87 46.03 2.23
791 792 3.136992 ACACAGGATCATGGTGATGCATA 59.863 43.478 12.66 0.00 46.03 3.14
792 793 2.092049 ACACAGGATCATGGTGATGCAT 60.092 45.455 12.66 0.00 46.03 3.96
793 794 1.282738 ACACAGGATCATGGTGATGCA 59.717 47.619 12.66 0.00 46.03 3.96
794 795 1.674441 CACACAGGATCATGGTGATGC 59.326 52.381 18.31 3.59 44.29 3.91
795 796 2.681344 CACACACAGGATCATGGTGATG 59.319 50.000 25.47 18.22 37.20 3.07
796 797 2.942752 GCACACACAGGATCATGGTGAT 60.943 50.000 25.47 13.21 40.34 3.06
797 798 1.611410 GCACACACAGGATCATGGTGA 60.611 52.381 25.47 0.00 36.42 4.02
798 799 0.806868 GCACACACAGGATCATGGTG 59.193 55.000 20.27 20.27 38.47 4.17
799 800 0.674581 CGCACACACAGGATCATGGT 60.675 55.000 12.66 4.08 0.00 3.55
800 801 0.674581 ACGCACACACAGGATCATGG 60.675 55.000 12.66 3.43 0.00 3.66
801 802 1.929169 CTACGCACACACAGGATCATG 59.071 52.381 5.68 5.68 0.00 3.07
802 803 1.134699 CCTACGCACACACAGGATCAT 60.135 52.381 0.00 0.00 0.00 2.45
803 804 0.246360 CCTACGCACACACAGGATCA 59.754 55.000 0.00 0.00 0.00 2.92
804 805 0.530744 TCCTACGCACACACAGGATC 59.469 55.000 0.00 0.00 32.20 3.36
805 806 1.195115 ATCCTACGCACACACAGGAT 58.805 50.000 0.00 0.00 41.97 3.24
806 807 0.973632 AATCCTACGCACACACAGGA 59.026 50.000 0.00 0.00 41.31 3.86
807 808 1.808411 AAATCCTACGCACACACAGG 58.192 50.000 0.00 0.00 0.00 4.00
808 809 3.896648 AAAAATCCTACGCACACACAG 57.103 42.857 0.00 0.00 0.00 3.66
828 829 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
829 830 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
830 831 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
831 832 5.239087 GTGTTGGGGAACGTAGTAATTTCAA 59.761 40.000 0.00 0.00 45.00 2.69
832 833 4.756135 GTGTTGGGGAACGTAGTAATTTCA 59.244 41.667 0.00 0.00 45.00 2.69
833 834 4.999311 AGTGTTGGGGAACGTAGTAATTTC 59.001 41.667 0.00 0.00 45.00 2.17
834 835 4.976864 AGTGTTGGGGAACGTAGTAATTT 58.023 39.130 0.00 0.00 45.00 1.82
835 836 4.628963 AGTGTTGGGGAACGTAGTAATT 57.371 40.909 0.00 0.00 45.00 1.40
836 837 5.945144 ATAGTGTTGGGGAACGTAGTAAT 57.055 39.130 0.00 0.00 45.00 1.89
837 838 5.245751 TCAATAGTGTTGGGGAACGTAGTAA 59.754 40.000 0.00 0.00 45.00 2.24
838 839 4.771577 TCAATAGTGTTGGGGAACGTAGTA 59.228 41.667 0.00 0.00 45.00 1.82
840 841 3.930848 GTCAATAGTGTTGGGGAACGTAG 59.069 47.826 0.00 0.00 0.00 3.51
841 842 3.324268 TGTCAATAGTGTTGGGGAACGTA 59.676 43.478 0.00 0.00 0.00 3.57
842 843 2.105134 TGTCAATAGTGTTGGGGAACGT 59.895 45.455 0.00 0.00 0.00 3.99
843 844 2.773487 TGTCAATAGTGTTGGGGAACG 58.227 47.619 0.00 0.00 0.00 3.95
844 845 4.589908 AGATGTCAATAGTGTTGGGGAAC 58.410 43.478 0.00 0.00 0.00 3.62
845 846 4.927267 AGATGTCAATAGTGTTGGGGAA 57.073 40.909 0.00 0.00 0.00 3.97
846 847 4.588899 CAAGATGTCAATAGTGTTGGGGA 58.411 43.478 0.00 0.00 0.00 4.81
847 848 3.129287 GCAAGATGTCAATAGTGTTGGGG 59.871 47.826 0.00 0.00 0.00 4.96
848 849 4.012374 AGCAAGATGTCAATAGTGTTGGG 58.988 43.478 0.00 0.00 0.00 4.12
849 850 5.633830 AAGCAAGATGTCAATAGTGTTGG 57.366 39.130 0.00 0.00 0.00 3.77
850 851 7.023575 GGTTAAGCAAGATGTCAATAGTGTTG 58.976 38.462 0.00 0.00 0.00 3.33
851 852 6.151144 GGGTTAAGCAAGATGTCAATAGTGTT 59.849 38.462 7.03 0.00 0.00 3.32
852 853 5.648092 GGGTTAAGCAAGATGTCAATAGTGT 59.352 40.000 7.03 0.00 0.00 3.55
853 854 5.220662 CGGGTTAAGCAAGATGTCAATAGTG 60.221 44.000 7.03 0.00 0.00 2.74
854 855 4.876107 CGGGTTAAGCAAGATGTCAATAGT 59.124 41.667 7.03 0.00 0.00 2.12
914 916 7.882179 ACAAATAACAAGACCGAATTAAGCTT 58.118 30.769 3.48 3.48 0.00 3.74
915 917 7.448748 ACAAATAACAAGACCGAATTAAGCT 57.551 32.000 0.00 0.00 0.00 3.74
1007 1013 1.401905 GCCTCATCATGGAACCGAAAC 59.598 52.381 0.00 0.00 0.00 2.78
1010 1016 1.526887 GGCCTCATCATGGAACCGA 59.473 57.895 0.00 0.00 0.00 4.69
1068 1075 4.958509 TCACGTTATCCAACTTGGTGTTA 58.041 39.130 7.72 0.00 39.03 2.41
1069 1076 3.811083 TCACGTTATCCAACTTGGTGTT 58.189 40.909 7.72 0.00 39.03 3.32
1086 1093 6.102663 AGTTCTCATATCTTTGTCCTTCACG 58.897 40.000 0.00 0.00 0.00 4.35
1162 1169 5.368145 TCTTCCTTCCGTCCATGATTTATG 58.632 41.667 0.00 0.00 36.50 1.90
1164 1171 5.188948 TCTTCTTCCTTCCGTCCATGATTTA 59.811 40.000 0.00 0.00 0.00 1.40
1251 1476 6.598850 TCTTTTAACTTGAACAACTTACCGGT 59.401 34.615 13.98 13.98 0.00 5.28
1310 1535 9.520515 AAGAACAAATGTGTCCATTAGTAAGAT 57.479 29.630 0.00 0.00 40.42 2.40
1311 1536 8.918202 AAGAACAAATGTGTCCATTAGTAAGA 57.082 30.769 0.00 0.00 40.42 2.10
1346 1571 1.614241 AAAGTGGAGGCGGCGACTAT 61.614 55.000 18.91 0.00 0.00 2.12
1452 1677 4.379290 GCCTCTCTGAAATGCTTCTTCAAC 60.379 45.833 0.00 0.00 32.57 3.18
1503 1728 1.756375 CGCTTCTTTCGCTCCATCCG 61.756 60.000 0.00 0.00 0.00 4.18
1598 1825 0.914644 CTTCATCCTCCTCTTGGGCA 59.085 55.000 0.00 0.00 34.39 5.36
1616 1843 0.531974 TTCCTTTCTTGTCGCGTGCT 60.532 50.000 5.77 0.00 0.00 4.40
1681 1911 6.871044 TTCTTGAATCGAAGACATAGTTCG 57.129 37.500 0.00 0.00 46.54 3.95
1700 1930 4.473444 ACATGGTTCATGACAGGTTTCTT 58.527 39.130 13.96 0.00 43.81 2.52
1734 1964 9.500785 TCATGACATAGTTTCATCACAAGTTTA 57.499 29.630 0.00 0.00 30.98 2.01
1839 2154 0.249398 CTAGCGGTAGGGTGCAAAGT 59.751 55.000 13.90 0.00 0.00 2.66
1845 2160 0.103208 CTGCTTCTAGCGGTAGGGTG 59.897 60.000 20.78 12.13 46.26 4.61
1856 2171 0.323999 TCCTACCGCCACTGCTTCTA 60.324 55.000 0.00 0.00 34.43 2.10
1863 2178 2.433436 GTTTCATTTCCTACCGCCACT 58.567 47.619 0.00 0.00 0.00 4.00
1864 2179 1.471287 GGTTTCATTTCCTACCGCCAC 59.529 52.381 0.00 0.00 0.00 5.01
1875 2190 2.525105 ATGGCGGTAGGGTTTCATTT 57.475 45.000 0.00 0.00 0.00 2.32
1911 2262 4.928601 TGCGTTCCAGTACATATAGACAC 58.071 43.478 0.00 0.00 0.00 3.67
1916 2267 3.552699 GCGTTTGCGTTCCAGTACATATA 59.447 43.478 0.00 0.00 40.81 0.86
1979 2340 4.137872 CCATGTACCGCCGTCCGT 62.138 66.667 0.00 0.00 34.38 4.69
1992 2353 2.124151 GGCAGTAGGGTGGCCATG 60.124 66.667 9.72 2.26 46.92 3.66
2020 2383 1.281867 CCTATTTGCTCACAGGACCCA 59.718 52.381 0.00 0.00 0.00 4.51
2022 2385 1.383523 GCCTATTTGCTCACAGGACC 58.616 55.000 0.00 0.00 0.00 4.46
2032 2395 2.539476 CCGAAAATGTGGCCTATTTGC 58.461 47.619 16.03 13.88 0.00 3.68
2060 2423 4.796495 GGCGGTAGGGTGGCCAAG 62.796 72.222 7.24 0.00 46.13 3.61
2083 2584 2.124320 CCAACCCTACCGCCATGG 60.124 66.667 7.63 7.63 46.41 3.66
2125 2647 3.800506 CCAACCCTATCGTCGTAAATGTC 59.199 47.826 0.00 0.00 0.00 3.06
2132 2654 1.985662 TGGCCAACCCTATCGTCGT 60.986 57.895 0.61 0.00 33.59 4.34
2135 2657 2.995547 GGTGGCCAACCCTATCGT 59.004 61.111 10.67 0.00 44.02 3.73
2165 2687 0.263765 TAGGGTCCTACCGCCAAGAT 59.736 55.000 0.00 0.00 39.83 2.40
2166 2688 0.685458 GTAGGGTCCTACCGCCAAGA 60.685 60.000 14.59 0.00 42.11 3.02
2168 2690 4.039042 GTAGGGTCCTACCGCCAA 57.961 61.111 14.59 0.00 42.11 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.