>input_sequence_85299
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATGGCTTGTTTCGGTTCCATGATGAGGCCCCC-GT
GTGCTAACCGCGAGGACATGCCGGACAAGTGGACTAACACCAAGTTGGATAACGTGAAGGACAAAGATATGAGAACTCCA
TCATGTTGGTGTGGAGATGTTTGCAAAGTTAAGGTATCCACCGACCGCCATAAATCATGGACGGAAGGAAGAAGATATTT
TGTTTGTTCCAACTATGCCTATGATCGTCCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTCCAGCTCACGCCTATGATGTACCACCGGTAAGTTGTTCAAGTTAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr3D_1_TraesCS3D01G301700
CAATAGCTCGCGATGTTGCTCCTCGTTTATTATTTTTGATATGTTCCTAGAGAAAAAATATGTTGAAAGATGTTAGTAGC
AATGATGCGGATTGGATCCATGATCTGAGGATTATCCTCATTGCTGCACATAATAATTATGTCCTTGATGCACCACTAGG
TGACAGACGTATTGCGGGAGTAGATGCAGACATTATGAACGTTTGGTTAGCTCAATATGATGACTACTTGATAGTTTAGT
GCACCATGCTTAATGGCTTAGAATTGGGACTTCAAAGACATTTTGAACGTCATGGACCATATGAGATGTTCCAGGAGTTG
AAGTTAATATTTCAAGCAAATACCCGAGTTGAGAGATATGAAGTCTCCAACAAGTTCTATAGCTAAAAGATGGAGGAGAA
TAGCTCAAGCAGTGAGCATGTGCTTAGATTGTCTGGGTACTACAATCACTTGAATCAAGTGGGAGTTAATTTCCCAGCCG
TGTGCGGTGCCCCCCTCCACCATATTCCACCTCGGTCATATCGTAGCGGTGCTTAGGCAAAGCTCTGCGTCGGTAGCAAC
ATCATCACCGTCATCACGCCGTCGTGCTGACGGAACTCTCCCGTGAAGCTCTGCTGGATCGGAGTTCGCGGGACGTAATC
GAGCTGAACGTGTGCTGAACTCGGAGGTGCCGTACGTTTGGTACTTGGATCGGTCGGATCGTGAAGATGTACGACTACAT
CAACCGCGTTGTGCTAACGCTTCCGCTTTTGGTCTACGAGGGTACGTGGACACACTCTCCCCTCTCGTTGCTATGCATCA
CCATGATCCTGTGTGTGCGTAGGATTTTTTTTTGAAATTACTACGTTCCCCAACACTATTGACATCTTGCTTAACCCGGA
TGGTTTAA-ATAATGTGAACGGTACTTACATTTATAAGC----TTAATTCGGTCTTGTTATTTGTTTTTCTTGCATATAT
ACATGTTATTTTACTTTACTAACTACCAAAATTTTCTTTATAGGCATGGCTTGTTTCGGTTCCATGATGAGGCCCCC-GT
GTGCTAACCGCGAGGACATGCCGGACAAGTGGACTAACACCAAGTTGGATAACGTGAAGGACAAAGATATGAGAACTCCA
TCATGTTGGTGTGGAGATGTTTGCAAAGTTAAGGTATCCACCGACCGCCATAAATCATGGACGGAAGGAAGAAGATATTT
TGTTTGTTCCAACTATGCCTATGATCGTCCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTCCAGCTCACGCCTATGATGTACCACCGGTAAGTTGTTCAAGTTAAAAGAGTATTCAACCGTTGTTACA
ACTTGAACCTATATATCTTACTAATGGACACATTTGTTCTTTATTCGTACATAGTCGCCGCCTCCACTTTGTAAGTACTT
CACATGGATAGATCAAGATGTGCCAGAAGATGTTAAGAAAGATCAATATCGAGATTGTCTAAGGAGGCAGTGGTTGGTTG
AAGAAGCATTTCAGAGAGGCTTGGATGAAGAGCATCGTGAAAAGGAGCGGATGGAGCGAAAGAAGCGTGAGGAGGAGAGG
GCACGCAAGGAGAAGATTGCTCGTCAAGAGGAGAGAGCAAGAAAGCTT-G-CAAGGGCTCGTGATGCCCAAGAGGAGGAT
GAAGCACGCGACAAGAAAGG-AAATGGCCTCGTGTGACCCAATAAGGCCTTCGTTC--AAAAACTAGTCACGAACTATGT
CTTCGATTCAAGAAACCTGTCATGAACCATGTCTTCGGTTTGTTAAACTTGTGATGAA----------------------
------------------------------------------ACTATGTCATGAACTATGTTTGTTGTGC-TGTTGCTGT
GAC-----------TTGACTTGGCTTGAA--ATGATCAAGAAGAAAAATAGAGCAAA------CTCT-GCTCTACTTTGC
ACCCTACCGCTAGAAGCAGTGGCGGTAGGAAATGAAACCCTACCGCCATA------------------------------
------GGGCGTGGCGGTAGGGTGTCTATATG----------TACTGGAACGCAAACGCTCCCCTGTTCTGCGGTAGGGT
TGGCCATCCTACCGCCAAGACGGACGGCGGTAC-A-TGGCCACCCTACTGCCTGCTCTGCTGTGGGTCCTGTGAGCAAAT
AGGCCACATTTTCGGCGGTAGGCTTGGCCACCCTAC--------------------------------------------
--------------------------------------------------------------------------------
--------------CGCCAGCGACCATGGCGGTAGGGTTGGTCACCCTACGG---------------------TGACCAA
ATCGGCGACATTTACGACGATAGGGTTGGCCACCCTACCGCCAGCCATCTTGGCGGTAGGACCCTACCGCCAGGGTTCAT
GGCGGTAGGGTTGGCCACC-TACGGCCGTTTTTAC---------------------------------------------
---------------------------------------------------------------------------TATGA
CCAAATAGGCCAATTTCTTGACGGTAGGGTTGGCC---------------------------------------------
--
>chr3A_43
------------------------------------------GTTCCTATAGAAAGC-TAAGTTGAAAGATGATGGTGGC
AACTACACGGACTGGGTCTGTAACTTGAGGATTATCCTGATTGGCGCATAGAAGTATTACATCCTGGAAGCACTGCTAGG
TAACAAACCCGCTACAGGAGCAATGCCACATGTTGTGATCACATGGCAGAGCAAAGCTGATGACTACTCGATAGTTTAGT
GTGCCATGCTTTATGGCTTAGAAGCAGGACTTCAACGACGTTTTGAACGTCATGGAGCATATGAGATGTTCCAGGAGTTG
AAGTTAATATTTCAAGCAAATGCCCGAATTG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGAGATATGAAATCTCTA
ATAAGTTCTATAGGTGCA--------------------------------------------AGATGGAGGAGAATAGTT
CTGTTAGTGAACATATACTCAAAATGTCTGGGTACCACAACCACTTGACTCAACTGGGAGTTAATCTTCCTGATGATAGT
GTGCGGTGCCCCCTCCACCATAATCCACCTCGGTAATATCATAGCGGTGCTTAGGCAAAGCCCTGTTCCGGTAGCATCAT
CATCACCGTCATCAAACTGTCGTGCTAACGAAGCTCTCCCTCAACACTCTGCTGGATCCTGAGTTTGTGGGATGTCACCG
AGCCGAATGTGTGCAGATCACGGAGGTGTCGTACTTTCAGTACTAGGATTGTTCGATCGTGAAGACGT------------
-----------------------ATGACCACATCAACCGCGTTGTCAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AATGCTTCCGCTTACGGTCTACG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AGGGTACAT
GGACAACACTCTCCCCTCTCGTTGTTATGCATCACCATGATCTTGCGTGTGCATAGG-----------------------
--------------------------------------------------------------------------------
-----------AATTTTTTTGAAATTACTGCGTTCCCCAACA--------------------------------------
--
>chr3D_856
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATTGACATCTTGCTTAACCAGGA
TGGTCG-A-ATAATGTGAACGGTACTTACATTTATTGGC----TTAATTCGGTCTTGTTATTTGTTTTTCTTGCATATAT
ACATGTTATTTTACTTTACTAACTACCAAATTTTTCTTTATAGGCATGGCTTCTTCCGGTTCCATGACGAGGCCCTC-GT
GTGCTAACCGCTAGGACATGCCGGACAAGTGGACAGACGCCGAGTTGGATAAGGTGAAGGACAAAGATATGAGAACTCCA
TCATGTTGGTGTGGAGATGTTTGCAAAGTTAAGGTATCCACCGACCGCAAGAAATCTTAGACGGAAGGAAGAAGATATTT
TGTTTGTCCCAACTATGCCTATGATCGTCCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGTCCAGCTCACGCCTAAGATGTACCGTCAGTAAGTTGTTCAAGTTCAAAGAGTATTCAACAATTGGTACA
ACTTGAACCTAT----CTTACTAATGACCACATTTGTTCTTTATTCGTACGTAGTCGCCGCCTCCACTTTGTAAGTACTT
CACATGGATAGATCAAGATGTGCCAGAAGATGTTAAGAAAGATCAATATCGAGATTGTCTAAGGAGGCAGCGGTTGTTTG
AAGAAGCATTTCAGAGAGGCTTGGATGAAGAGCGTCGTGAAAAGGAGAGGATGGAGCGAAAGAAGCGTGAGGAGGAGAGG
GCACGCAAGGAGAAGATTGCTCGTCAAGAGGAGAGAGCAAGAAAGCTT-G-CAAGGGCTCGTGAAGCCCAAGAGGAGGAT
GAGGCACGCGACAAGAAAGGAAAATGGCCTCGTGTGACC-AATAAGGTCTTCGTTTCTAAAA---AGTCATGAACTATGC
CTTCGATTCGAGAAACATGTGATGAACTACGTCTTTGATTTGTGAAACCTGTCATGAACTATGT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr7D_856
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATTGACATCTTGCTTAACCCGGA
TGGTTG-AAATAATGTGAACGGTACTTACATTTATTGGC----TTCATTCGGTATTGTTATTTGTTTTTCTTCCATATAT
ACATGTTATTTTACATTACTAACTACCAAATTTTTGTTTAGAGGCATGACTTCTTCCGTTTCCATGACGAGGCCCCC-GT
GTGCTAACCGCGAGGACATGCCGGACAAGTGGACAGACGCCGAGTTGGATAAGGTGAAGGACAAAGATATGAGAACTCCA
TCATGTTGGTGTGGAGATGTTTGCAAAGTTAAGGTATCCACCGACCGCAAGAAATCATTGACGGAAGGAAGAAGATATTT
TGTTTGTCCCAACTATGCCTATGATCGTGCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTCTAGATCACACCTAGGATGTACCGCTGGTAAGTTGTTGAAGTTCAAAGAGTATTCAACC----CTACA
ACTTGAACCTAT----CTTACTAATGACCACATTTGTTCTTTATTCGTACGTAGTCGCCGCCTCAACTTTGTAAGTACTT
CACATGGATAGATCAAGATGTGCCAGAAGATGTTAAGAAAGATCAACATCGAGATTGTCTACGGAGGCAGCGGTTGTTTG
AAGAAGCATTTCAGAGAGGCTTGGATGAAGAGCGTCGTGAAAAGGAGAGGATGGAGTGAAAGAAACGTGAGGAGGAGAGG
GCACGCAAGGAGAAGATTGCTCGTCAAGAGGAGAGAGCAAGAAAGCTT-G-AAAGGACTCGTGAAGCCCAAGAGGAGGAT
GAGGCACGCGACAAGAAAGGAAAATGGCCTCGTGTGACCCAATAAGGCCTTCGTTTTGAAAAACTAGTCATGAACTATGC
CTTCGATTCGAGAAACATGTGATGAACCGTGTCTTTGATTTGTGAAAAATGTGTTGAACAATGCACTTTATTTGCGAAAC
ATGTCGTGAACTATGTCTTTGATTTCTGAAACTTGTGATGAAACTATGTAATGAACTACATCTGTTATGC-TGCTGTTGC
TGTCAAT-----------------TGAAATGATGAACACGATGAAAAACAGAGCAAA------CTCTTGCTCTGCTTTGA
ACTCTACCGCCAGAAGCCTTGGGCGTAGGCAATGAAAGCCTACCGCCATA------------------------------
------GGGCATGGCGGTAGGTTGCCGATCTG----------TCCTGGAACGCAAAATCTCCCCTGTTTTGCAGTAGGGT
TGGCCATCCTACCGCCACGGCGGATGGCGGTAGGG-TGGCCACCCAACTGCCTGCTCTGCTGCGTGTCCTGTGACCAAAT
CGGCCACATTTTTGGCGGTAGGGTTGGCCACCCTAC--------------------------------------------
--------------------------------------------------------------------------------
--------------CGCCACTGTTCTTGGCGGTAGGGTTGGTCACCCTACAGCCTGATCTACTGCC--TCCTATGGCCAA
ATCGGCCACATTCCCGGCAGTAGGGTTGGCCACCCTACCACCAACCTGCATGGCGGTAGGCCCCTACCGCCAGGGTTCAT
GGCGGTAGGGTTGGCCACCCTACGACCATTTTTAC---------------------------------------------
---------------------------------------------------------------------------TGTGA
CCAAATCGGCCAATTTTTTTACGGTAGGGTTGGC----------------------------------------------
--
>chr7D_856
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATTGACATCTTGCTCAACCCGAA
TGGTTG-AAATAATGTGAACGGTACTTACATTTATTGGC----TTAATTCGGTCTTGTTATTTGTTTTTCTTGCATATAT
ACATGTTATTTTACTTTACTAACAACCAATTTTTTCTTTATAGGCATGGCTTCTTCCGGTTCCATGACGAGGCCCCC-GT
GTGCTAACCGCGAGGACATGTCGGACAAGTTGATATACGCCGAGTTGGATAAGGTGAAGGACAAAGATATGAGAACTCCA
TCATGTTGGTGTGGAGATGTTTGCAAAGTTAAGGTATCCACCGACCGCAAGAAATCATGGACAGAAGGAAGAAGATATTT
TGTTTGTCCCAACTATGCCTATGATCGTCCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTCCAGCTCACGCCTATGATGTACCGCCGCTAAGTTGTTGAAGTTCAAATAGTATTCAACCGTTGCTACA
ACTTGAACCTAT----CTTACTAATGACCACATTTGATCTTTATTCGTACGTAGTCGCCGCCTCCACTTTGTAAGTACTT
CACATGGATAGATCAAGATGTGCCAAAAGATGTTAAAAAAGATCAACATCGAGATTGTCTAAGGAGGCAGCGGTTGTTTG
AAGAAGCATTTCAGAGAGGCTTGGATGAAGAGCGTCGTGAAAAGGAGAAGATGGAGTGAAAGAAGTGTGAGGAGGAGAGG
GCACACAAGGAGAAGATTGCTCGTCAAGAGGAGAGAGCAAGAAAGCTT-G-CAAGGGCTCGTGAAGCCCAAGAGGAGGAT
GAGGCATGCGACAAGAAAGGAAAACGTCCTCGTGTGACCCAATAAGGCCTTCGTATCGAGAAACTTGTCATGAACTATGT
CTTCGATTCGAGAAACCTGTGAAGAACTATGTCTTTGATTTGTGAAACTTGTGTTGAACTATGTACTTTATTTGCGAAAC
CTGTCGTGAACTATGTCTTTGATTTCTGAAACTTGTGATGAAACTATGTCATGAACTACATTTGTTGTGC-TGTTGTTGC
TGTCACTTGTTTGTTTGGCCTGTCTGAAATGATGAACACGAGGAAAAACAGAGCAAA------CTAT-GCTTTGC-----
------------------------------------ACCCTACCGCCAAA------------------------------
------GGGCCTGGCAGTAGGTTGCCGAACTG----------TCCTGGAACGAAAATGCTCCCCTGTTCTGCGGTAGGGT
TGGCCATCCTACCGCCAAGGAGGACGGCGGTAGGG-TGGCCACCCTACTGTCTGCTCTGATGCCTGTCCTGTGACCAAAT
CGGACACATTTCGTGCGGTAGGGTTGGCCACCCTAC--------------------------------------------
--------------------------------------------------------------------------------
--------------CGCCAGTGTTCATGGCGGTAGGGTTGGTCACCCTACGGCCTGCTCTGCTACCTGTCCTATGACCAA
ATCGGCCACATTTCCTGCGGTAGGGTTGGCC-----------------------------ACCCTACCGCCAGGGTTCAT
GGCGGTAGGGTTGGCCACCCTATGGCTTGCTCTGCTGCCTGTCCTTCTCTTGTTTCTTTACTTGTGGAATTCATCAGATG
TAGCAGGAAATAATTACCAAGTGTGTACGCTACTTTCTAAAATGGAAGATAAGATGAATGAATGAATAGATTTCATGTGA
CCAAATCGGCCACATTTTCTGCGGTAGGGTTGGCCACCCTACCGCCAGGGTTCATGGCGGTAGGGTTGGCCACCCTACGG
CC
>chr5D_856
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATTGACATCTTGCTTAACCCGGA
TGGTTG-AAATAATGTGAATGGTACTTAAATTTATTGGC----TTAATTCGGTCTTGTTATTTGTTTTTCTTGCATATAT
ACATGTTATTTTACTTTACTAACAACCAAATTTTTCTTTATAGGCATGGCTTCTTCCGGTTCCATGACGAGGGCCCC-AT
GTGCTAACCGCGAGGACATGCCGAACAAGTGGACAGACGCCGAGTTGGATAAGGTGAAGGACAGAGATATGAGAACTCCA
TCATGTTGGTGTGGAGATGTTTGCAAAGTTAAGGTATCCACCAACTGCAAGAAATCAAGGACAGAAGGAAGAAGATATTT
TGTTTGTCCCAACTATGCCTATGATCGTCCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGTCCAGCTCACGCCTATGATGTACCGCCAGTAAGTTGTTGAAGTTCAAAGGGTATACAACCGTTGCTACA
ACTTGAACCTAT----CTTACTAATGACCAAATTCGTTCTTTATTCATACGTAGTCGCCGCCTCCACTTTGTAAGTACTT
CACATGGATAGATCAAGATGTGCCAGAAGATGTTGAAAAAGATCAACATCGAGATTGGCTAAGGAGGCAGTGGTTGTTTG
AAGAAGCATTTCAGAGAGGCATGGATGAAGAGCGTCGTGAAAAGGAGAAGATGGAGCGAAAGAAGCGTGAGGAGGAGAGG
GCACTCAAGGAGAAGATTGCTCATCAAGAGGAGAGAGCAAGAAAGCTC-G-CAAGGGCTCGTGAAGCCCAAGAGGAGGAT
GAGGCACGCGACAAGAAAGGAAAATGGCCTCGTGTGACCCAATAAGGCCTTCGTTTCGAGAAACTTGTCATGAACTATGT
CTTCGATTCGAGAATCCTGTGAAGAACTATGTCTTTGATTTGTGAAACTTGTGTTGAACTATGT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr5D_856
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATTGACATCTTGCTTAACCCGGA
TGGTTG-AAATAATGTGAACGGTACTTAAATTTATTGGC----TTAATTCAGTCTTGTTATTTGTTTTTCTTGCATATAT
ACATGTTATTTTACTCTACTAACAACCAAATTTTTCTTTATAGGCATGGCTTCTTCCGGTTCCATGACAAGGCCCCC-GT
GTGCTAACCGCGAGGACACGCCGGACAAGTGGACAGACGCCGAGTTGGATAAGGTGAAGGACAAAGATATGAGAACTCCA
TCATGTTGGTGTGGAGATGTTTGCAAAGTTAAGGTATCCACCGACCGCAAGAAATCATGGACAGAAGGAAGAAGATATTT
TGTTTGTCCCAACTATGCCTATGATCGTCCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTCCAGCTCACGTCTATGATGTACTGTCGGTAAATTGTTGAAGTTCAAAGAGTATTCAACCGTTGCTACA
ACTTGAACCTGT----CTTACTAATGACCAAATTTGTTCTTTATTCGTACGTAGTCGCCGCCTCCACTTTGTAAGTACTT
CACACGGATAGATCAGGATGTTCCAGAAGATGTTAAAAAAGATCAACATCAAGATTGTCTAAGGAGGCAGCGGTTGTTTG
AAGAAGCATTTCAGAGAGGCTTGGCTGAAGAGCGTCGTGAAAAGGAGAAGATGGAGCGAAAGAAGCGTGAGGAGGAGAGG
GCACACAAGGAGAAGATTGCTCGTCAAGAGGAGAGAGAAAGAAAGCTT-G-CAAGGGCTCGTGAAGCCCAAGAGGAGGAT
GAGGCACGCGAGAAGAAAGGAAAATGGCCTCGTGTGACCCAATAAGGCCTTCGTACCGACAAACTTGTCATGAACTATGT
CTTCGATTCGAGAAACCTGTGAAGAACTATGTCTTTGATTTGTGAAACTTGTGTTGAACTATATATTTTGTTTGTGAAAC
CTGTCGTGAACTATGTCTTTGATTTCTGAAACCTATGATGAAACTATGTCATGAACTGCATTTGTTGTGC-TGTTGTTGC
TATCACTTGTTTGTTTGGCCTGTCTAAAATGATGCTGAAGAAGAAAAACAGAGCAAA------CTCT-GCTTTGC-----
------------------------------------AACCTACCGCCAAAAGCCTTGGCGGTAGGATATGAAACCCTACC
GCCATAGGGCGTGCCGGTAGGTTGCCGAACTG----------TTCTGGAACGGAAATGATCCCCTGTTCTGCGGTAAGGT
TGGCCACCCTACCACCAAGGAGGGCGGCGGTAGGA-TGGCCACCCTACTGCCTGCTATGCTGCATGTCCTGTGACCAAAT
CGGACACATTTCATGCGGTAGGGTTGGCCACCCTAC--------------------------------------------
--------------------------------------------------------------------------------
--------------CGCCAGAGTTCATGGCGGTAGGGTTGGTCACCCTACGG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr5D_856
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATTGACATCTTGCTTAACCTGGA
TGGTTG-AAATAATGTGAACGGTACTTAAATTTATTG-C----TTAATTCGGTCTTGTTATTTGTTTTTCTTGCATACAT
ACATGTTATTTTACTTTACTAACAACCAAAATTTTCTTTATAGGCATGGCTTCTTCCGGTTCCATGATGAGG-CCCC-GT
GTGCTAACCGCGAGGACATGCCGGACAAGTGGACAGACGCCGAGTTGGATAAGGGGAAGGACAAAGATATTAGAACTCCA
TCATGTTGGTGTGGAGATGTTTGCAAAGTTAAGGTATCCACCGGCCACAAGAAATAATGGACATAAGGAAGAAGATATTT
TGTTTGTCCCAACTATGCCTATGATCGTCCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTCCAGCTCACGCCTATGATGTACCGCCGGTAAGTTGTTGAAGTTCAAATAGTATTCAACCGTTGGTACA
ACTTGAACCTAT----CTTACTAATGACAAAATTTGTTATTTATTCGTACGTAGTCGCCGCCTCCACTTTGTAAGTACTT
CACATGGATAGATCAAGATGTGCCAGAAGATGTTAAAAGAGATCAACGTCGAGATTGTCTAAGGAGGCAGCAGTTGTTTG
AAGAAGCATTTCAGAGAGGCTTGGATGAAGAGCGCCGTGAAAAGGAGAAGATGGAGCGAAAGAAGCGTGAGGAGGAGAGG
GCACACAAGGAGAAGATTGCTCGTCCAGAGGAGAGAGCAAGAAAGATT-G-CAAGGACTCGTGAAGCCCAAGAGGAGGAT
GAGGCACGTGACAAGAAAGGAAAATGGCCTCGTGTGACCCAATAAGGCCTTCGTTTTGAGAAACTTGTCATGAACTATGT
CTTCGATTCGAGAAACCTGTGAAGAACTATGTCTTTGATTTGTGAAACTTGTGTTGAACTCTGTACTTTATTTGTGAAAC
CTCTCATGAACTATGTCTTTGATTTCTAAAACTTGTGATCAAACTATGTCATTAACTACATTTCTTGTGC-TGCTGTTGC
TGTCACTTGTTTGTTTGGCCTATCTGAAATGATGATGAAGAAGAAAAACAGAGCAAA------CTCT-GCTTTGC-----
------------------------------------ACCCTATCGCCAGAAGCCTCGGCGGTAGGATATGAAACCCTACC
ACCATAGGGCGTGGTGGTAGGTCGTCGAACTG----------TCCTGGAAAGGAAACACTCCCCTGTTCCGCGGTAGGGT
TGGCCACCCTACCACCAAGGTAGACGGCGGTAGGGTTGGCCACCCTAATGCCCGTTCTGCTGCCTATCCTGTGACCAAAT
AGGCCACATTTTCTATGGTAGGGTTGGCCACCCTAC--------------------------------------------
--------------------------------------------------------------------------------
--------------CGCCAGGGTTCATGGCGGTAGGGTTGGTCACCCTACGGCCTCCTCTGCTGCCTGTG----------
--------------------------------------------------------------------------------
----------------------------------C---------------------------------------------
---------------------------------------------------------------------------TATGA
CCAAATCGGCCACATTTTCTGCGGTAGGGTTGGCC---------------------------------------------
--
>chr2D_856
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATTGACATCTTGCTTAATCCGGA
TGGTTG-AAATAATGTGAATGGTAATTAATTTTTTGG-C----TTAATTCGGTCTTGTTATTTGTTTTTCTTGCATATAT
ACATGTTATTTTACTTTACTAACAACCATTTTTTTCTTTATAGGCATGGCTTCTTCTGGTTCCATGACGAGGCCCCC-GT
GTGCTAACCACGAGGACATGTCGGACAAGTGGACAGACACCGAGTTGGATAAGGTGAAGGACAAAGATATGAGAACTCCA
TCATGTTGGTGTGGAGATGTTTGCAAAGTTAAGGTATCCACAGACCGCAAGAAATCATGCACGGAAGGAAGAAGATATTT
T-TTTGTCCCAACTATGCCTATGATCGTCCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTCCAGCTCACGCCTATGATGTACCGCTGGTAAGTTGGTGAAGTTCAATGAGTATTCAACTGTTGCTACA
ACTTGAACCTAT----CTTACTAATGACCACATTTGTTCTTTATTCGTACGTAGTCGCCGCCTCCACTTTGTAAGTACTT
CACCTGGATAGATCAAGATGTGCCAGAAGATGTTAAGAAAGATCAACATCGAGATTGTCTAAGGAGGCAGCGGTTGTTTG
AAGAAGTATTTCAGAGAGGCTTAGATGAAGAGCATCGTGAAAAGGAGAGGATGGAGCGAAAGAAGCGTGAGGAGGAGAGG
GCACGCAAGGAGAAGATTGCTCGTCAAGAGGAGAGAGCAAGAAAGC-T-G-CAAGGGCTCGTGAAGTCCAAGAGGAGGAT
GAGGCACGCGACAAGAAAGGAAAATGGCCTCGTGTGACCCAATAAGGCCTTCGTTTTGAAAAACTAGTCATGAACTATGC
CTTCGATTCGAGAAACATGTGATGAAGTGTGTCTTTGATTTGTGAAACCTATCATGAACTATGTACTTTATTTGTGAAAC
CTGACATGAACTATGTCTTCCATTTGTGAAACTTGTGATGAAACTATGTCATGAACTATATTTGTTATGC-TACTGTTGT
TGTGACT-----------------TGAAATGATGAACACGAGGAAAAACAGAGCAAACTCT-GCTTT-GCTTTGC-----
------------------------------------ACCCTACCGCCAGAAGCCTTGGCGGTAGGATATGAAACCCTACC
GCCATAGGGCGTGGCGGTAGGTGGCCGAACTG----------TCCTAGAACAGAAACGCTCCCCTGTTATGCGGTAGGGT
TGGCCATCCTACCGCCAAGGGGGACGGTGGTAGGG-TGGCCACCCTACTGCCTGCTCTGCTGCCTGTCCTGTGACCAAAT
CAGCCACTTTTTCTGCAGTAGGGTTAGCCACCCTAC--------------------------------------------
--------------------------------------------------------------------------------
--------------CGCCAGGGTTCATGGCGGTAGGGTTGGCCACCCTACGGCC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr1A_857
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TATTGACATCTTGCTTAACCCGGA
TGGTTG-AAATAATGTGAATGGTACTTAAATTTATTGTCTTAATTAATTCGGTCTTGTTATTTGTTTTTCTTGCATATAT
ACATGTTATTTTACTTTACTAACAACCAAAATTTTCTTTATAGGCATGGCTTCTTCTGGTTCCATGACGAGG-CCCCTGT
GTGCTAACCACGAGGACATGCCGGACAAGTGGACAGATGCTGAGTTGGATAAGGTGAAGGACAAAGATATGAGAACTCCA
TCATGTTGGTGTGGAGATGTTTGCAAAGTTAAGGTATCCACCAACCGCATGAAATCATGGACAGAAGGAAGAAGATATTT
TGTTTGTCCCAACTATGCGTATGATCGTCCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTCTAGCTCACGCCTATGGTGTACCGCCGGTAAGTTGTTGAAGTTCGAAGAGTATTCAACTGTTGCTATA
ACTTGAACCTAT----CTTACTAATGACCACATTTGTTCTTTATTCATACGTAGTCGCCACCTCCACTTTGTAAGTACTT
CACATGGATAGATCAAGATGTGCCAGAAGATGTTAAAAAAGATCAACATCGAGATTGTCTAAGGAGGCATCAGTTGTTTG
AATAAGCATTTCAGAGAGGCTTGGACGAAGAGCATCGTGAAAAGGAGAAGATGGAGCAAAAGAAGCGTGAGGAGGAGAGG
GCACACAAGGAGAAGATTGCTCATCAAGAGGAGAGAGCAAGAAAGC-TTG-CAAGGGCTCGTGAAGCCCAAGAGGAGGAT
GAGGCACGCGACAATAAAGGAAAATGGCCTCGTGTGACCCAATAAGGCCTTCGTCTCAAGAAACTTGTCATGAACTATGT
CTTCGATTTGAGAAACCTGTGAAGAACCATGTCTTTGATTTGTGAAAATTGTGTTGAACTATGT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr5A_857
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TATTGACATCTTGCTTAACTCGGA
TGGCTG-AAATAATGTGAACGGTACTTACATTTATTGGC----TTAATTCGGCCTTGTTATTTTTTTTTC---CATATAT
AAATTTTATTTTA-TTTACTATCTACCAAAATTTTCTTTATAGGCATGGCTTCTTCCGGTTCCATGACGAGGCCCCC-AT
GTGCTAACCGTGAGGACATGCCGGACAAGTGGACAGACGGCAAGTTGGATAAGGTGAAGGACAAAGATATGAGAACTCCA
TCATGTTGGTGTGGAGATGTTTGCAAAGTTAAGGTATCCACCGACCGCAACAAATCATGGACGAAAGGAAGAAGATATTT
TGTTTGTCCCAATTATGCCTATGACCGTGCT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTCCAGCTCACTCCTATGATGTACCGCCGGTAAGTTGTTCAAGTTCAAAGAGTATTCAACC----CTACA
ACTTGAACCTAT----CTTACTAATGACCACATTTGTTCTTTATACGTACGTAGTCGCCGCCTCCACTTTGTAAGTACTT
CACATGGATAGATTAAGATGTGCCAGAAGATGTTAAGAAAGATCAACATCGAGATTGTCTACGGAGGCAGCGGTTGTTTG
AAGAAGCATTTTAGAGAGGCTTGGATGAAGAGCGTCGTGAAGAGGAGAGGATGGAGTGAAAGAAGCGTGAGGAGGAGAGG
GCACGCAAGGATAAGATTGCTCGTCAAGAGGAGAGAGCAAGAAAGC-T-GGCAAGGGCTTGTTAAGCCCAAGAGGAGGAT
GAGGCACGCGACAAGAAAGGAAAATGGCCTCGTGTGACCCAATAAGGCCTTCATTTCGAAAAACTAGTCATGAACTATGC
CTTCGATTCGAGAAACGTCTGATGAACTATGTCTTTGATTTGTGAAACTTGTTTTGAACTATGTACTTTATTTGCGAAAC
ATGTCGTGAACTATGTCTTTGATTTCTGAAACTTGTGATGAAACTATGTCATGAACTACATTTGTTGTGT-TTCTGTTGC
TGTCAAT-----------------TGAAATGATGAACACGATGAAAAATAGAGCAAACTCTTGCTCT-GCTTCGC-----
------------------------------------ACCCTACCGCCAGAAGCCTTGGCGGTAGGCAATGAAACCCTACC
GCCATAGGGCGTGGCGGTAGGTTGTCGATATG----------TCCTGGAACACAAATGCTTCCCTGTTCTGCAGTAGGGT
-------------------------------------GGCCACCCAACTGCC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr2D_1678
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GTCATGAACTATGT
ACTTTAGTTGTGAAACCTGTCATGAACTATGTCTTCGATTTGTGAAACTTGTGATGAA----------------------
------------------------------------------ACTATCTCATGAACTATGTTTGTTGTGC-TGTTGCTGT
GAC-----------TTGACTTGTCTTCAA--ATGATTAAGAAGAAAAACAAAGTAAACTCT-GCTTT-GCTTTGC-----
------------------------------------ACCCTATTGCCGAGGCCTCTGGCGGTAGGCTATGAAATCCCACC
GCCATGGGCATTGGCGGTAAGCAATTAAACCCCACAGCAAACTCCTGGAACGCAAACTCTTCCCTGTTTTGCGGTAGGGT
TGGCCACCCTACCGCCAAGGAAGACGGCGGTAGGG-CGGCCACCCAACTGCCTGCTCCGCTCCTTGTTCTGTGACCAAAT
CGGCGATATTTCTGCCGGTAGGGTTGGCCACCCTACCGCCATGATCCCTGGTGGTAGGGTTGGCCACCCAAGCTGCTTGT
T---------CTGCCACCAAATCGACGATATTTC----------------------------------------------
--------------------------TGGCGGTAGGGTTGGCCACCCTACCGCCAGGGG---------------------
--------------------------------------------------------------------------------
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---------------TCATGGCGGTAGG----------------------------------------------------
--
>chr1D_1769
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-------------------------------------------------------------TTGTTGTGTTTGTTGCTAT
GAC-----------TTGACTTGTCTTGAA--ATGATGAAGAAGAAAAGCAGAGCAAATTCT-TCTCT-ACTTTGC-----
------------------------------------ACCCTACCGCCAGAAGCCTTGGCGGTAGGATATGAAACCCTACC
GCCATAGGGCGTGGCGGTAGGTTGCCGATCTT----------TCCTGGAACGCAAACGGTCCCCTATTCTGTGGTAGGGT
TGGCCATCCTACCGCCAAGGAGGACGGCGGTAGGG-TGGCCACCCTACTGCCTGCTCTGCTGCGTGTCCTGTGACCAAAT
CGGCCACATCTTTGGCGATAGGGTTGGCCACCCTACCGCCAGCCTTCTTGGCGGTAGGGTTGGTCACCCTATAGCCTCAT
CTGCTGCCTCCTGTGACCAAATCGGCCACATTTCCGATGGTAGGGTTGGGCACCCTACCGCCAACCTGCACGGCGGTAGG
TTTAGCCAACCTATCGCCAGGGATCATGGCGATAGGGTTGACCACCCTACGGCCATTTTTT-------------------
--------------------------------------------------------------------------------
----------------------------------C---------------------------------------------
---------------------------------------------------------------------------TGTGA
CCAAATAGGCCAATTTCTTGGCGGTAGGGTTGGCC---------------------------------------------
--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----SSS--S-----------S-S--S--
--SS-SS----S---S--SS-S-SS-------------S----SS---S-S--SS----SS----S--S----SS-----
-S---S--SSSS-S-S----S-SSSS--S-SS--S---S-SSS---SSSSSSS--SS-----------S-----------
-SS--------S-----------SSS---------S---S----------------S-----------------------
---------------------S-----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
-----SS----------------------------SS-------------------------------------------
----------------------------------------------------S--S------------------------
----------------------------------SS----------------S---------------------------
------------------------------------------------S-S-----------------------------
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-----------------------------------S---------------------------------------S----
------------SSSS----------SS----------------------S-----------------------------
----------------------------------------------------------------------------S---
-----------------------------------------------S--------------------------------
----------------------------------------------------------------S---------------
--S-------------------------------------------------------------------S---------
---------S---------------------------S-----S------------------------------------
--------------------------------------------------------------------------------
----------------------S--------------------------------------------------S-----S
--S-------S------SS---SS-----S--------------------------------------------------
---------------------S----S----------------S------------------------------------
-------------------S------------S-----------------------------S-S---------S-----
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S--S--------------------------------------------------------
------S------S--S--S-------------------S---S--SS-S------------------------------
---------------------------S----------------------------------------------------
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--
>forward_756
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----------------ACGCTTCCGCTTTTGGTCTA--------------------------------------------
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--
>reverse_2160
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-------------------------------------------------------------------------------C
ACCCTACCGCTAGAAGCAG-------------------------------------------------------------
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--
