Multiple sequence alignment - TraesCS3D01G301300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G301300 chr3D 100.000 2630 0 0 1 2630 415662984 415660355 0.000000e+00 4857.0
1 TraesCS3D01G301300 chr3D 94.902 255 13 0 2191 2445 62813853 62813599 1.470000e-107 399.0
2 TraesCS3D01G301300 chr7D 98.090 1885 21 2 144 2028 6354525 6352656 0.000000e+00 3267.0
3 TraesCS3D01G301300 chr3B 85.418 1255 88 46 495 1679 542494569 542493340 0.000000e+00 1216.0
4 TraesCS3D01G301300 chr3B 91.411 163 11 2 1739 1900 542491394 542491234 1.230000e-53 220.0
5 TraesCS3D01G301300 chr3B 86.458 192 21 3 2443 2630 145299798 145299608 3.430000e-49 206.0
6 TraesCS3D01G301300 chr3B 87.571 177 6 3 2026 2186 145299972 145299796 9.610000e-45 191.0
7 TraesCS3D01G301300 chr3A 86.285 926 56 28 745 1662 534477856 534478718 0.000000e+00 941.0
8 TraesCS3D01G301300 chr3A 95.181 83 4 0 2026 2108 596761500 596761418 5.910000e-27 132.0
9 TraesCS3D01G301300 chr7A 95.038 262 13 0 2183 2444 690838577 690838838 1.880000e-111 412.0
10 TraesCS3D01G301300 chr7A 94.340 265 14 1 2182 2446 300510976 300511239 3.150000e-109 405.0
11 TraesCS3D01G301300 chr5B 94.253 261 15 0 2184 2444 464609838 464609578 1.470000e-107 399.0
12 TraesCS3D01G301300 chr5B 90.446 157 12 1 2443 2596 455223904 455224060 1.230000e-48 204.0
13 TraesCS3D01G301300 chr5B 85.876 177 9 3 2026 2186 455223730 455223906 9.680000e-40 174.0
14 TraesCS3D01G301300 chr5B 90.909 44 3 1 2026 2069 315640744 315640786 1.020000e-04 58.4
15 TraesCS3D01G301300 chr4B 93.893 262 16 0 2184 2445 398088759 398088498 1.900000e-106 396.0
16 TraesCS3D01G301300 chr4B 94.118 153 6 3 1 150 517960780 517960628 2.040000e-56 230.0
17 TraesCS3D01G301300 chr1B 92.473 279 18 3 2170 2446 538625652 538625375 1.900000e-106 396.0
18 TraesCS3D01G301300 chr1B 95.833 144 6 0 1 144 183451908 183451765 1.570000e-57 233.0
19 TraesCS3D01G301300 chr1B 95.205 146 6 1 1 145 57105690 57105545 2.040000e-56 230.0
20 TraesCS3D01G301300 chr2D 92.937 269 18 1 2186 2453 112871208 112870940 8.830000e-105 390.0
21 TraesCS3D01G301300 chr2D 91.756 279 20 3 2178 2453 644999127 644999405 4.110000e-103 385.0
22 TraesCS3D01G301300 chr7B 92.830 265 19 0 2184 2448 598296407 598296143 4.110000e-103 385.0
23 TraesCS3D01G301300 chr7B 95.833 144 6 0 1 144 382524105 382523962 1.570000e-57 233.0
24 TraesCS3D01G301300 chr7B 95.804 143 6 0 1 143 742113435 742113577 5.660000e-57 231.0
25 TraesCS3D01G301300 chr7B 92.025 163 11 1 2026 2186 688785249 688785087 7.320000e-56 228.0
26 TraesCS3D01G301300 chr7B 87.879 198 13 5 2443 2630 688785089 688784893 3.410000e-54 222.0
27 TraesCS3D01G301300 chr5A 92.188 192 11 2 2443 2630 568672984 568673175 4.310000e-68 268.0
28 TraesCS3D01G301300 chr5A 92.188 192 11 2 2443 2630 568686123 568686314 4.310000e-68 268.0
29 TraesCS3D01G301300 chr5A 84.746 177 11 3 2026 2186 568672810 568672986 2.090000e-36 163.0
30 TraesCS3D01G301300 chr5A 84.746 177 11 3 2026 2186 568685949 568686125 2.090000e-36 163.0
31 TraesCS3D01G301300 chr1A 91.667 192 11 3 2443 2630 17077545 17077735 7.220000e-66 261.0
32 TraesCS3D01G301300 chr1A 94.000 150 8 1 1 149 372230961 372230812 2.630000e-55 226.0
33 TraesCS3D01G301300 chr1A 88.136 177 5 3 2026 2186 17077371 17077547 2.070000e-46 196.0
34 TraesCS3D01G301300 chr1A 93.976 83 5 0 2026 2108 547308619 547308701 2.750000e-25 126.0
35 TraesCS3D01G301300 chr6B 91.146 192 12 3 2443 2630 567535264 567535454 3.360000e-64 255.0
36 TraesCS3D01G301300 chr6B 87.006 177 7 3 2026 2186 567535090 567535266 4.470000e-43 185.0
37 TraesCS3D01G301300 chr2B 94.595 148 8 0 1 148 247371261 247371408 2.040000e-56 230.0
38 TraesCS3D01G301300 chr2B 95.172 145 7 0 1 145 762387481 762387625 2.040000e-56 230.0
39 TraesCS3D01G301300 chrUn 91.975 162 10 3 1 159 79627708 79627869 9.470000e-55 224.0
40 TraesCS3D01G301300 chr4D 90.909 44 3 1 2026 2069 509400037 509399995 1.020000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G301300 chr3D 415660355 415662984 2629 True 4857 4857 100.0000 1 2630 1 chr3D.!!$R2 2629
1 TraesCS3D01G301300 chr7D 6352656 6354525 1869 True 3267 3267 98.0900 144 2028 1 chr7D.!!$R1 1884
2 TraesCS3D01G301300 chr3B 542491234 542494569 3335 True 718 1216 88.4145 495 1900 2 chr3B.!!$R2 1405
3 TraesCS3D01G301300 chr3A 534477856 534478718 862 False 941 941 86.2850 745 1662 1 chr3A.!!$F1 917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.336392 AAATCCCTTCCCTCTTGCCC 59.664 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 4033 0.105246 ATCTTCCTCGCCTCCCTCAT 60.105 55.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.911788 AGATGAAATGTACCAATCTAATCAAGT 57.088 29.630 0.00 0.00 0.00 3.16
67 68 9.462606 TCAAGTAAGAATTAAGAAGGAAATCCC 57.537 33.333 0.00 0.00 30.83 3.85
68 69 9.467796 CAAGTAAGAATTAAGAAGGAAATCCCT 57.532 33.333 0.00 0.00 38.80 4.20
79 80 1.769026 GAAATCCCTTCCCTCTTGCC 58.231 55.000 0.00 0.00 0.00 4.52
80 81 0.336392 AAATCCCTTCCCTCTTGCCC 59.664 55.000 0.00 0.00 0.00 5.36
81 82 1.926426 AATCCCTTCCCTCTTGCCCG 61.926 60.000 0.00 0.00 0.00 6.13
82 83 4.115199 CCCTTCCCTCTTGCCCGG 62.115 72.222 0.00 0.00 0.00 5.73
83 84 4.803908 CCTTCCCTCTTGCCCGGC 62.804 72.222 1.04 1.04 0.00 6.13
84 85 4.803908 CTTCCCTCTTGCCCGGCC 62.804 72.222 7.03 0.00 0.00 6.13
95 96 3.737172 CCCGGCCGTGAGCAAAAG 61.737 66.667 26.12 4.67 46.50 2.27
96 97 3.737172 CCGGCCGTGAGCAAAAGG 61.737 66.667 26.12 0.00 46.50 3.11
99 100 4.056125 GCCGTGAGCAAAAGGCCC 62.056 66.667 0.00 0.00 46.50 5.80
100 101 3.373565 CCGTGAGCAAAAGGCCCC 61.374 66.667 0.00 0.00 46.50 5.80
101 102 3.373565 CGTGAGCAAAAGGCCCCC 61.374 66.667 0.00 0.00 46.50 5.40
102 103 3.373565 GTGAGCAAAAGGCCCCCG 61.374 66.667 0.00 0.00 46.50 5.73
103 104 4.676951 TGAGCAAAAGGCCCCCGG 62.677 66.667 0.00 0.00 46.50 5.73
125 126 2.685380 CCCTCTCGCACCCTCCTT 60.685 66.667 0.00 0.00 0.00 3.36
126 127 2.726351 CCCTCTCGCACCCTCCTTC 61.726 68.421 0.00 0.00 0.00 3.46
127 128 1.684049 CCTCTCGCACCCTCCTTCT 60.684 63.158 0.00 0.00 0.00 2.85
128 129 0.395862 CCTCTCGCACCCTCCTTCTA 60.396 60.000 0.00 0.00 0.00 2.10
129 130 1.028905 CTCTCGCACCCTCCTTCTAG 58.971 60.000 0.00 0.00 0.00 2.43
130 131 1.038130 TCTCGCACCCTCCTTCTAGC 61.038 60.000 0.00 0.00 0.00 3.42
131 132 1.304962 TCGCACCCTCCTTCTAGCA 60.305 57.895 0.00 0.00 0.00 3.49
132 133 1.142748 CGCACCCTCCTTCTAGCAG 59.857 63.158 0.00 0.00 0.00 4.24
133 134 1.153269 GCACCCTCCTTCTAGCAGC 60.153 63.158 0.00 0.00 0.00 5.25
134 135 1.142748 CACCCTCCTTCTAGCAGCG 59.857 63.158 0.00 0.00 0.00 5.18
135 136 2.107953 CCCTCCTTCTAGCAGCGC 59.892 66.667 0.00 0.00 0.00 5.92
136 137 2.107953 CCTCCTTCTAGCAGCGCC 59.892 66.667 2.29 0.00 0.00 6.53
137 138 2.725312 CCTCCTTCTAGCAGCGCCA 61.725 63.158 2.29 0.00 0.00 5.69
138 139 1.445095 CTCCTTCTAGCAGCGCCAT 59.555 57.895 2.29 0.00 0.00 4.40
139 140 0.676184 CTCCTTCTAGCAGCGCCATA 59.324 55.000 2.29 0.00 0.00 2.74
140 141 1.069204 CTCCTTCTAGCAGCGCCATAA 59.931 52.381 2.29 0.00 0.00 1.90
141 142 1.202533 TCCTTCTAGCAGCGCCATAAC 60.203 52.381 2.29 0.00 0.00 1.89
142 143 1.473257 CCTTCTAGCAGCGCCATAACA 60.473 52.381 2.29 0.00 0.00 2.41
261 262 5.357032 AGGGGCGAAATGTTCAGTATTTAAG 59.643 40.000 0.00 0.00 0.00 1.85
294 295 2.426522 TGGCATTTCGAAGGTTCTCAG 58.573 47.619 0.00 0.00 0.00 3.35
692 697 0.614979 GACTCCTCCCACACAGGCTA 60.615 60.000 0.00 0.00 35.39 3.93
736 760 1.449070 TCAGCAAGCGAGCATGGAG 60.449 57.895 6.21 0.00 36.85 3.86
765 793 1.610554 GGGTTCGACCGATCCTTCCA 61.611 60.000 16.23 0.00 39.83 3.53
866 907 1.623542 GCTTCGCCTTTCTCCCCCTA 61.624 60.000 0.00 0.00 0.00 3.53
886 927 1.112113 ATATATAGGCCCGCACCTCG 58.888 55.000 0.00 0.00 41.50 4.63
1030 1085 2.147387 AAGCCAGGGTCGTCCAAGT 61.147 57.895 0.04 0.00 38.24 3.16
1608 1670 4.019174 AGCTTGATTTCCACGATTTCCAT 58.981 39.130 0.00 0.00 0.00 3.41
1770 3756 4.274147 TGGGTGTTTCTGCTTTTACAAGA 58.726 39.130 0.00 0.00 30.57 3.02
1906 3893 3.861276 TTTTGAACTATCTCGCGAGGA 57.139 42.857 33.98 21.57 0.00 3.71
2054 4041 2.928334 CAGGATTTGGACATGAGGGAG 58.072 52.381 0.00 0.00 0.00 4.30
2055 4042 1.849039 AGGATTTGGACATGAGGGAGG 59.151 52.381 0.00 0.00 0.00 4.30
2056 4043 1.685148 GATTTGGACATGAGGGAGGC 58.315 55.000 0.00 0.00 0.00 4.70
2057 4044 0.107017 ATTTGGACATGAGGGAGGCG 60.107 55.000 0.00 0.00 0.00 5.52
2058 4045 1.198094 TTTGGACATGAGGGAGGCGA 61.198 55.000 0.00 0.00 0.00 5.54
2059 4046 1.617018 TTGGACATGAGGGAGGCGAG 61.617 60.000 0.00 0.00 0.00 5.03
2060 4047 2.801631 GGACATGAGGGAGGCGAGG 61.802 68.421 0.00 0.00 0.00 4.63
2061 4048 1.758514 GACATGAGGGAGGCGAGGA 60.759 63.158 0.00 0.00 0.00 3.71
2062 4049 1.306141 ACATGAGGGAGGCGAGGAA 60.306 57.895 0.00 0.00 0.00 3.36
2063 4050 1.333636 ACATGAGGGAGGCGAGGAAG 61.334 60.000 0.00 0.00 0.00 3.46
2064 4051 1.045350 CATGAGGGAGGCGAGGAAGA 61.045 60.000 0.00 0.00 0.00 2.87
2065 4052 0.105246 ATGAGGGAGGCGAGGAAGAT 60.105 55.000 0.00 0.00 0.00 2.40
2066 4053 0.556258 TGAGGGAGGCGAGGAAGATA 59.444 55.000 0.00 0.00 0.00 1.98
2067 4054 1.063190 TGAGGGAGGCGAGGAAGATAA 60.063 52.381 0.00 0.00 0.00 1.75
2068 4055 2.252714 GAGGGAGGCGAGGAAGATAAT 58.747 52.381 0.00 0.00 0.00 1.28
2069 4056 3.181422 TGAGGGAGGCGAGGAAGATAATA 60.181 47.826 0.00 0.00 0.00 0.98
2070 4057 3.833070 GAGGGAGGCGAGGAAGATAATAA 59.167 47.826 0.00 0.00 0.00 1.40
2071 4058 4.430441 AGGGAGGCGAGGAAGATAATAAT 58.570 43.478 0.00 0.00 0.00 1.28
2072 4059 4.846940 AGGGAGGCGAGGAAGATAATAATT 59.153 41.667 0.00 0.00 0.00 1.40
2073 4060 4.938226 GGGAGGCGAGGAAGATAATAATTG 59.062 45.833 0.00 0.00 0.00 2.32
2074 4061 5.513267 GGGAGGCGAGGAAGATAATAATTGT 60.513 44.000 0.00 0.00 0.00 2.71
2075 4062 5.998363 GGAGGCGAGGAAGATAATAATTGTT 59.002 40.000 0.00 0.00 0.00 2.83
2076 4063 6.147985 GGAGGCGAGGAAGATAATAATTGTTC 59.852 42.308 0.00 0.00 0.00 3.18
2077 4064 6.591935 AGGCGAGGAAGATAATAATTGTTCA 58.408 36.000 0.00 0.00 0.00 3.18
2078 4065 7.054124 AGGCGAGGAAGATAATAATTGTTCAA 58.946 34.615 0.00 0.00 0.00 2.69
2079 4066 7.227512 AGGCGAGGAAGATAATAATTGTTCAAG 59.772 37.037 0.00 0.00 0.00 3.02
2080 4067 7.226720 GGCGAGGAAGATAATAATTGTTCAAGA 59.773 37.037 0.00 0.00 0.00 3.02
2081 4068 8.279103 GCGAGGAAGATAATAATTGTTCAAGAG 58.721 37.037 0.00 0.00 0.00 2.85
2082 4069 9.534565 CGAGGAAGATAATAATTGTTCAAGAGA 57.465 33.333 0.00 0.00 0.00 3.10
2091 4078 5.895636 AATTGTTCAAGAGACACAACACA 57.104 34.783 0.00 0.00 33.33 3.72
2092 4079 5.895636 ATTGTTCAAGAGACACAACACAA 57.104 34.783 0.00 0.00 33.33 3.33
2093 4080 5.895636 TTGTTCAAGAGACACAACACAAT 57.104 34.783 0.00 0.00 0.00 2.71
2094 4081 6.993786 TTGTTCAAGAGACACAACACAATA 57.006 33.333 0.00 0.00 0.00 1.90
2095 4082 6.993786 TGTTCAAGAGACACAACACAATAA 57.006 33.333 0.00 0.00 0.00 1.40
2096 4083 7.566760 TGTTCAAGAGACACAACACAATAAT 57.433 32.000 0.00 0.00 0.00 1.28
2097 4084 8.669946 TGTTCAAGAGACACAACACAATAATA 57.330 30.769 0.00 0.00 0.00 0.98
2098 4085 9.283768 TGTTCAAGAGACACAACACAATAATAT 57.716 29.630 0.00 0.00 0.00 1.28
2105 4092 9.803315 GAGACACAACACAATAATATAGTCTCA 57.197 33.333 0.06 0.00 44.49 3.27
2109 4096 9.689075 CACAACACAATAATATAGTCTCAAACG 57.311 33.333 0.00 0.00 0.00 3.60
2110 4097 9.431887 ACAACACAATAATATAGTCTCAAACGT 57.568 29.630 0.00 0.00 0.00 3.99
2125 4112 9.982651 AGTCTCAAACGTATAATTAGCATATGT 57.017 29.630 4.29 0.00 30.99 2.29
2160 4147 9.630098 ACATAAAAGAAAACTGCATATCAACTG 57.370 29.630 0.00 0.00 0.00 3.16
2161 4148 9.079833 CATAAAAGAAAACTGCATATCAACTGG 57.920 33.333 0.00 0.00 0.00 4.00
2162 4149 6.899393 AAAGAAAACTGCATATCAACTGGA 57.101 33.333 0.00 0.00 0.00 3.86
2163 4150 5.886960 AGAAAACTGCATATCAACTGGAC 57.113 39.130 0.00 0.00 0.00 4.02
2164 4151 5.564550 AGAAAACTGCATATCAACTGGACT 58.435 37.500 0.00 0.00 0.00 3.85
2165 4152 5.413833 AGAAAACTGCATATCAACTGGACTG 59.586 40.000 0.00 0.00 0.00 3.51
2166 4153 3.272574 ACTGCATATCAACTGGACTGG 57.727 47.619 0.00 0.00 0.00 4.00
2167 4154 2.092753 ACTGCATATCAACTGGACTGGG 60.093 50.000 0.00 0.00 0.00 4.45
2168 4155 1.212688 TGCATATCAACTGGACTGGGG 59.787 52.381 0.00 0.00 0.00 4.96
2169 4156 1.212935 GCATATCAACTGGACTGGGGT 59.787 52.381 0.00 0.00 0.00 4.95
2170 4157 2.357154 GCATATCAACTGGACTGGGGTT 60.357 50.000 0.00 0.00 0.00 4.11
2171 4158 3.282021 CATATCAACTGGACTGGGGTTG 58.718 50.000 0.00 0.00 40.87 3.77
2172 4159 0.405585 ATCAACTGGACTGGGGTTGG 59.594 55.000 0.00 0.00 40.20 3.77
2173 4160 0.696143 TCAACTGGACTGGGGTTGGA 60.696 55.000 0.00 0.00 40.20 3.53
2174 4161 0.184933 CAACTGGACTGGGGTTGGAA 59.815 55.000 0.00 0.00 37.32 3.53
2175 4162 1.158007 AACTGGACTGGGGTTGGAAT 58.842 50.000 0.00 0.00 0.00 3.01
2176 4163 1.158007 ACTGGACTGGGGTTGGAATT 58.842 50.000 0.00 0.00 0.00 2.17
2177 4164 2.354328 ACTGGACTGGGGTTGGAATTA 58.646 47.619 0.00 0.00 0.00 1.40
2178 4165 2.308866 ACTGGACTGGGGTTGGAATTAG 59.691 50.000 0.00 0.00 0.00 1.73
2179 4166 1.005450 TGGACTGGGGTTGGAATTAGC 59.995 52.381 0.00 0.00 0.00 3.09
2180 4167 1.005450 GGACTGGGGTTGGAATTAGCA 59.995 52.381 0.00 0.00 0.00 3.49
2181 4168 2.358195 GGACTGGGGTTGGAATTAGCAT 60.358 50.000 0.00 0.00 0.00 3.79
2182 4169 3.365472 GACTGGGGTTGGAATTAGCATT 58.635 45.455 0.00 0.00 0.00 3.56
2183 4170 3.769300 GACTGGGGTTGGAATTAGCATTT 59.231 43.478 0.00 0.00 0.00 2.32
2184 4171 4.941713 ACTGGGGTTGGAATTAGCATTTA 58.058 39.130 0.00 0.00 0.00 1.40
2185 4172 4.709886 ACTGGGGTTGGAATTAGCATTTAC 59.290 41.667 0.00 0.00 0.00 2.01
2186 4173 4.941713 TGGGGTTGGAATTAGCATTTACT 58.058 39.130 0.00 0.00 0.00 2.24
2187 4174 4.953579 TGGGGTTGGAATTAGCATTTACTC 59.046 41.667 0.00 0.00 0.00 2.59
2188 4175 4.341235 GGGGTTGGAATTAGCATTTACTCC 59.659 45.833 0.00 0.00 0.00 3.85
2189 4176 5.201243 GGGTTGGAATTAGCATTTACTCCT 58.799 41.667 0.00 0.00 0.00 3.69
2190 4177 5.656859 GGGTTGGAATTAGCATTTACTCCTT 59.343 40.000 0.00 0.00 0.00 3.36
2191 4178 6.183360 GGGTTGGAATTAGCATTTACTCCTTC 60.183 42.308 0.00 0.00 0.00 3.46
2192 4179 6.183360 GGTTGGAATTAGCATTTACTCCTTCC 60.183 42.308 0.00 0.00 33.80 3.46
2193 4180 6.073447 TGGAATTAGCATTTACTCCTTCCA 57.927 37.500 0.00 0.00 37.71 3.53
2194 4181 6.672593 TGGAATTAGCATTTACTCCTTCCAT 58.327 36.000 0.00 0.00 36.33 3.41
2195 4182 7.125391 TGGAATTAGCATTTACTCCTTCCATT 58.875 34.615 0.00 0.00 36.33 3.16
2196 4183 7.285401 TGGAATTAGCATTTACTCCTTCCATTC 59.715 37.037 0.00 0.00 36.33 2.67
2197 4184 7.255625 GGAATTAGCATTTACTCCTTCCATTCC 60.256 40.741 0.00 0.00 33.58 3.01
2198 4185 4.870021 AGCATTTACTCCTTCCATTCCT 57.130 40.909 0.00 0.00 0.00 3.36
2199 4186 5.198602 AGCATTTACTCCTTCCATTCCTT 57.801 39.130 0.00 0.00 0.00 3.36
2200 4187 5.583932 AGCATTTACTCCTTCCATTCCTTT 58.416 37.500 0.00 0.00 0.00 3.11
2201 4188 6.019108 AGCATTTACTCCTTCCATTCCTTTT 58.981 36.000 0.00 0.00 0.00 2.27
2202 4189 6.498303 AGCATTTACTCCTTCCATTCCTTTTT 59.502 34.615 0.00 0.00 0.00 1.94
2203 4190 7.673926 AGCATTTACTCCTTCCATTCCTTTTTA 59.326 33.333 0.00 0.00 0.00 1.52
2204 4191 7.976175 GCATTTACTCCTTCCATTCCTTTTTAG 59.024 37.037 0.00 0.00 0.00 1.85
2205 4192 9.025041 CATTTACTCCTTCCATTCCTTTTTAGT 57.975 33.333 0.00 0.00 0.00 2.24
2206 4193 8.631480 TTTACTCCTTCCATTCCTTTTTAGTC 57.369 34.615 0.00 0.00 0.00 2.59
2207 4194 6.455690 ACTCCTTCCATTCCTTTTTAGTCT 57.544 37.500 0.00 0.00 0.00 3.24
2208 4195 6.241645 ACTCCTTCCATTCCTTTTTAGTCTG 58.758 40.000 0.00 0.00 0.00 3.51
2209 4196 5.010282 TCCTTCCATTCCTTTTTAGTCTGC 58.990 41.667 0.00 0.00 0.00 4.26
2210 4197 4.766891 CCTTCCATTCCTTTTTAGTCTGCA 59.233 41.667 0.00 0.00 0.00 4.41
2211 4198 5.420104 CCTTCCATTCCTTTTTAGTCTGCAT 59.580 40.000 0.00 0.00 0.00 3.96
2212 4199 6.603201 CCTTCCATTCCTTTTTAGTCTGCATA 59.397 38.462 0.00 0.00 0.00 3.14
2213 4200 7.286316 CCTTCCATTCCTTTTTAGTCTGCATAT 59.714 37.037 0.00 0.00 0.00 1.78
2214 4201 9.342308 CTTCCATTCCTTTTTAGTCTGCATATA 57.658 33.333 0.00 0.00 0.00 0.86
2215 4202 9.693739 TTCCATTCCTTTTTAGTCTGCATATAA 57.306 29.630 0.00 0.00 0.00 0.98
2216 4203 9.342308 TCCATTCCTTTTTAGTCTGCATATAAG 57.658 33.333 0.00 0.00 0.00 1.73
2217 4204 8.078596 CCATTCCTTTTTAGTCTGCATATAAGC 58.921 37.037 0.00 0.00 0.00 3.09
2218 4205 8.844244 CATTCCTTTTTAGTCTGCATATAAGCT 58.156 33.333 1.16 0.00 34.99 3.74
2219 4206 8.807948 TTCCTTTTTAGTCTGCATATAAGCTT 57.192 30.769 3.48 3.48 34.99 3.74
2220 4207 8.807948 TCCTTTTTAGTCTGCATATAAGCTTT 57.192 30.769 3.20 0.00 34.99 3.51
2221 4208 8.677300 TCCTTTTTAGTCTGCATATAAGCTTTG 58.323 33.333 3.20 0.00 34.99 2.77
2222 4209 7.917505 CCTTTTTAGTCTGCATATAAGCTTTGG 59.082 37.037 3.20 0.00 34.99 3.28
2223 4210 7.938140 TTTTAGTCTGCATATAAGCTTTGGT 57.062 32.000 3.20 0.00 34.99 3.67
2224 4211 7.553881 TTTAGTCTGCATATAAGCTTTGGTC 57.446 36.000 3.20 0.00 34.99 4.02
2225 4212 5.102953 AGTCTGCATATAAGCTTTGGTCA 57.897 39.130 3.20 0.00 34.99 4.02
2226 4213 5.500234 AGTCTGCATATAAGCTTTGGTCAA 58.500 37.500 3.20 0.00 34.99 3.18
2227 4214 5.945784 AGTCTGCATATAAGCTTTGGTCAAA 59.054 36.000 3.20 0.00 34.99 2.69
2267 4254 8.990163 AGTTTGACCAACTTTATAGGAGAAAA 57.010 30.769 0.00 0.00 43.89 2.29
2268 4255 9.588096 AGTTTGACCAACTTTATAGGAGAAAAT 57.412 29.630 0.00 0.00 43.89 1.82
2405 4392 8.474006 AAAGTTAACAATGTTTGACTTTGACC 57.526 30.769 25.40 0.00 41.33 4.02
2406 4393 7.164230 AGTTAACAATGTTTGACTTTGACCA 57.836 32.000 3.17 0.00 36.91 4.02
2407 4394 7.607250 AGTTAACAATGTTTGACTTTGACCAA 58.393 30.769 3.17 0.00 36.91 3.67
2408 4395 8.091449 AGTTAACAATGTTTGACTTTGACCAAA 58.909 29.630 3.17 0.00 36.91 3.28
2410 4397 5.175127 ACAATGTTTGACTTTGACCAAACC 58.825 37.500 13.29 0.26 46.82 3.27
2411 4398 5.046663 ACAATGTTTGACTTTGACCAAACCT 60.047 36.000 13.29 3.54 46.82 3.50
2412 4399 5.675684 ATGTTTGACTTTGACCAAACCTT 57.324 34.783 13.29 1.71 46.82 3.50
2413 4400 6.783708 ATGTTTGACTTTGACCAAACCTTA 57.216 33.333 13.29 0.00 46.82 2.69
2414 4401 6.783708 TGTTTGACTTTGACCAAACCTTAT 57.216 33.333 13.29 0.00 46.82 1.73
2415 4402 7.883391 TGTTTGACTTTGACCAAACCTTATA 57.117 32.000 13.29 0.00 46.82 0.98
2416 4403 8.472007 TGTTTGACTTTGACCAAACCTTATAT 57.528 30.769 13.29 0.00 46.82 0.86
2417 4404 8.356657 TGTTTGACTTTGACCAAACCTTATATG 58.643 33.333 13.29 0.00 46.82 1.78
2418 4405 6.509418 TGACTTTGACCAAACCTTATATGC 57.491 37.500 0.00 0.00 0.00 3.14
2419 4406 6.007076 TGACTTTGACCAAACCTTATATGCA 58.993 36.000 0.00 0.00 0.00 3.96
2420 4407 6.150976 TGACTTTGACCAAACCTTATATGCAG 59.849 38.462 0.00 0.00 0.00 4.41
2421 4408 6.245408 ACTTTGACCAAACCTTATATGCAGA 58.755 36.000 0.00 0.00 0.00 4.26
2422 4409 6.151144 ACTTTGACCAAACCTTATATGCAGAC 59.849 38.462 0.00 0.00 0.00 3.51
2423 4410 5.435686 TGACCAAACCTTATATGCAGACT 57.564 39.130 0.00 0.00 0.00 3.24
2424 4411 6.553953 TGACCAAACCTTATATGCAGACTA 57.446 37.500 0.00 0.00 0.00 2.59
2425 4412 6.953101 TGACCAAACCTTATATGCAGACTAA 58.047 36.000 0.00 0.00 0.00 2.24
2426 4413 7.398829 TGACCAAACCTTATATGCAGACTAAA 58.601 34.615 0.00 0.00 0.00 1.85
2427 4414 7.885922 TGACCAAACCTTATATGCAGACTAAAA 59.114 33.333 0.00 0.00 0.00 1.52
2428 4415 8.644374 ACCAAACCTTATATGCAGACTAAAAA 57.356 30.769 0.00 0.00 0.00 1.94
2429 4416 8.739972 ACCAAACCTTATATGCAGACTAAAAAG 58.260 33.333 0.00 0.00 0.00 2.27
2430 4417 8.956426 CCAAACCTTATATGCAGACTAAAAAGA 58.044 33.333 0.00 0.00 0.00 2.52
2435 4422 9.956720 CCTTATATGCAGACTAAAAAGAAATGG 57.043 33.333 0.00 0.00 0.00 3.16
2439 4426 6.808008 TGCAGACTAAAAAGAAATGGAGAG 57.192 37.500 0.00 0.00 0.00 3.20
2440 4427 6.533730 TGCAGACTAAAAAGAAATGGAGAGA 58.466 36.000 0.00 0.00 0.00 3.10
2441 4428 6.652481 TGCAGACTAAAAAGAAATGGAGAGAG 59.348 38.462 0.00 0.00 0.00 3.20
2442 4429 6.652900 GCAGACTAAAAAGAAATGGAGAGAGT 59.347 38.462 0.00 0.00 0.00 3.24
2443 4430 7.819900 GCAGACTAAAAAGAAATGGAGAGAGTA 59.180 37.037 0.00 0.00 0.00 2.59
2444 4431 9.145865 CAGACTAAAAAGAAATGGAGAGAGTAC 57.854 37.037 0.00 0.00 0.00 2.73
2445 4432 8.871125 AGACTAAAAAGAAATGGAGAGAGTACA 58.129 33.333 0.00 0.00 0.00 2.90
2446 4433 9.490379 GACTAAAAAGAAATGGAGAGAGTACAA 57.510 33.333 0.00 0.00 0.00 2.41
2447 4434 9.847224 ACTAAAAAGAAATGGAGAGAGTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
2449 4436 8.980481 AAAAAGAAATGGAGAGAGTACAAAGA 57.020 30.769 0.00 0.00 0.00 2.52
2450 4437 9.579932 AAAAAGAAATGGAGAGAGTACAAAGAT 57.420 29.630 0.00 0.00 0.00 2.40
2451 4438 9.579932 AAAAGAAATGGAGAGAGTACAAAGATT 57.420 29.630 0.00 0.00 0.00 2.40
2452 4439 9.579932 AAAGAAATGGAGAGAGTACAAAGATTT 57.420 29.630 0.00 0.00 0.00 2.17
2453 4440 8.558973 AGAAATGGAGAGAGTACAAAGATTTG 57.441 34.615 3.79 3.79 43.62 2.32
2468 4455 7.655236 CAAAGATTTGTATTTGCCATGACAA 57.345 32.000 0.00 0.00 33.59 3.18
2469 4456 8.259049 CAAAGATTTGTATTTGCCATGACAAT 57.741 30.769 0.00 0.00 32.19 2.71
2470 4457 8.723311 CAAAGATTTGTATTTGCCATGACAATT 58.277 29.630 0.00 0.00 32.19 2.32
2471 4458 8.851541 AAGATTTGTATTTGCCATGACAATTT 57.148 26.923 0.00 0.00 32.19 1.82
2472 4459 8.259049 AGATTTGTATTTGCCATGACAATTTG 57.741 30.769 0.00 0.00 32.19 2.32
2473 4460 8.095792 AGATTTGTATTTGCCATGACAATTTGA 58.904 29.630 2.79 0.00 32.19 2.69
2474 4461 7.655236 TTTGTATTTGCCATGACAATTTGAG 57.345 32.000 2.79 0.00 32.19 3.02
2475 4462 5.170021 TGTATTTGCCATGACAATTTGAGC 58.830 37.500 2.79 0.00 0.00 4.26
2476 4463 4.546829 ATTTGCCATGACAATTTGAGCT 57.453 36.364 2.79 0.00 0.00 4.09
2477 4464 5.664294 ATTTGCCATGACAATTTGAGCTA 57.336 34.783 2.79 0.00 0.00 3.32
2478 4465 4.707030 TTGCCATGACAATTTGAGCTAG 57.293 40.909 2.79 0.00 0.00 3.42
2479 4466 3.954200 TGCCATGACAATTTGAGCTAGA 58.046 40.909 2.79 0.00 0.00 2.43
2480 4467 4.529897 TGCCATGACAATTTGAGCTAGAT 58.470 39.130 2.79 0.00 0.00 1.98
2481 4468 4.337274 TGCCATGACAATTTGAGCTAGATG 59.663 41.667 2.79 0.00 0.00 2.90
2482 4469 4.792057 GCCATGACAATTTGAGCTAGATGC 60.792 45.833 2.79 0.00 43.29 3.91
2483 4470 4.337274 CCATGACAATTTGAGCTAGATGCA 59.663 41.667 2.79 0.00 45.94 3.96
2484 4471 5.163591 CCATGACAATTTGAGCTAGATGCAA 60.164 40.000 2.79 0.00 45.94 4.08
2485 4472 6.461092 CCATGACAATTTGAGCTAGATGCAAT 60.461 38.462 2.79 0.00 45.94 3.56
2486 4473 5.886992 TGACAATTTGAGCTAGATGCAATG 58.113 37.500 2.79 0.00 45.94 2.82
2487 4474 5.163591 TGACAATTTGAGCTAGATGCAATGG 60.164 40.000 2.79 0.00 45.94 3.16
2488 4475 4.098960 ACAATTTGAGCTAGATGCAATGGG 59.901 41.667 2.79 0.00 45.94 4.00
2489 4476 1.683943 TTGAGCTAGATGCAATGGGC 58.316 50.000 0.00 0.00 45.94 5.36
2490 4477 0.841961 TGAGCTAGATGCAATGGGCT 59.158 50.000 7.20 7.20 45.94 5.19
2491 4478 1.213678 TGAGCTAGATGCAATGGGCTT 59.786 47.619 8.55 0.00 45.94 4.35
2492 4479 1.607628 GAGCTAGATGCAATGGGCTTG 59.392 52.381 8.55 0.00 45.94 4.01
2493 4480 1.213678 AGCTAGATGCAATGGGCTTGA 59.786 47.619 0.00 0.00 45.94 3.02
2494 4481 2.026641 GCTAGATGCAATGGGCTTGAA 58.973 47.619 0.00 0.00 45.15 2.69
2495 4482 2.428171 GCTAGATGCAATGGGCTTGAAA 59.572 45.455 0.00 0.00 45.15 2.69
2496 4483 3.119029 GCTAGATGCAATGGGCTTGAAAA 60.119 43.478 0.00 0.00 45.15 2.29
2497 4484 4.621274 GCTAGATGCAATGGGCTTGAAAAA 60.621 41.667 0.00 0.00 45.15 1.94
2498 4485 3.667360 AGATGCAATGGGCTTGAAAAAC 58.333 40.909 0.00 0.00 45.15 2.43
2499 4486 1.863267 TGCAATGGGCTTGAAAAACG 58.137 45.000 0.00 0.00 45.15 3.60
2500 4487 1.410517 TGCAATGGGCTTGAAAAACGA 59.589 42.857 0.00 0.00 45.15 3.85
2501 4488 2.159043 TGCAATGGGCTTGAAAAACGAA 60.159 40.909 0.00 0.00 45.15 3.85
2502 4489 3.066380 GCAATGGGCTTGAAAAACGAAT 58.934 40.909 0.00 0.00 40.25 3.34
2503 4490 4.241681 GCAATGGGCTTGAAAAACGAATA 58.758 39.130 0.00 0.00 40.25 1.75
2504 4491 4.869861 GCAATGGGCTTGAAAAACGAATAT 59.130 37.500 0.00 0.00 40.25 1.28
2505 4492 5.220453 GCAATGGGCTTGAAAAACGAATATG 60.220 40.000 0.00 0.00 40.25 1.78
2506 4493 5.659440 ATGGGCTTGAAAAACGAATATGT 57.341 34.783 0.00 0.00 0.00 2.29
2507 4494 5.461032 TGGGCTTGAAAAACGAATATGTT 57.539 34.783 0.00 0.00 0.00 2.71
2508 4495 5.848406 TGGGCTTGAAAAACGAATATGTTT 58.152 33.333 0.00 0.00 43.60 2.83
2535 4522 8.785329 AGTTGTATTCTTTCTCTTCATCCTTC 57.215 34.615 0.00 0.00 0.00 3.46
2536 4523 8.378565 AGTTGTATTCTTTCTCTTCATCCTTCA 58.621 33.333 0.00 0.00 0.00 3.02
2537 4524 8.663911 GTTGTATTCTTTCTCTTCATCCTTCAG 58.336 37.037 0.00 0.00 0.00 3.02
2538 4525 7.911651 TGTATTCTTTCTCTTCATCCTTCAGT 58.088 34.615 0.00 0.00 0.00 3.41
2539 4526 7.821359 TGTATTCTTTCTCTTCATCCTTCAGTG 59.179 37.037 0.00 0.00 0.00 3.66
2540 4527 6.425210 TTCTTTCTCTTCATCCTTCAGTGA 57.575 37.500 0.00 0.00 0.00 3.41
2541 4528 6.617782 TCTTTCTCTTCATCCTTCAGTGAT 57.382 37.500 0.00 0.00 0.00 3.06
2542 4529 7.013823 TCTTTCTCTTCATCCTTCAGTGATT 57.986 36.000 0.00 0.00 0.00 2.57
2543 4530 7.456725 TCTTTCTCTTCATCCTTCAGTGATTT 58.543 34.615 0.00 0.00 0.00 2.17
2544 4531 8.597167 TCTTTCTCTTCATCCTTCAGTGATTTA 58.403 33.333 0.00 0.00 0.00 1.40
2545 4532 8.783833 TTTCTCTTCATCCTTCAGTGATTTAG 57.216 34.615 0.00 0.00 0.00 1.85
2546 4533 7.724490 TCTCTTCATCCTTCAGTGATTTAGA 57.276 36.000 0.00 0.00 0.00 2.10
2547 4534 7.551585 TCTCTTCATCCTTCAGTGATTTAGAC 58.448 38.462 0.00 0.00 0.00 2.59
2548 4535 7.179160 TCTCTTCATCCTTCAGTGATTTAGACA 59.821 37.037 0.00 0.00 0.00 3.41
2549 4536 7.855375 TCTTCATCCTTCAGTGATTTAGACAT 58.145 34.615 0.00 0.00 0.00 3.06
2550 4537 7.767659 TCTTCATCCTTCAGTGATTTAGACATG 59.232 37.037 0.00 0.00 0.00 3.21
2551 4538 7.186570 TCATCCTTCAGTGATTTAGACATGA 57.813 36.000 0.00 0.00 0.00 3.07
2552 4539 7.623630 TCATCCTTCAGTGATTTAGACATGAA 58.376 34.615 0.00 0.00 0.00 2.57
2553 4540 8.102676 TCATCCTTCAGTGATTTAGACATGAAA 58.897 33.333 0.00 0.00 0.00 2.69
2554 4541 7.672983 TCCTTCAGTGATTTAGACATGAAAC 57.327 36.000 0.00 0.00 0.00 2.78
2555 4542 7.223584 TCCTTCAGTGATTTAGACATGAAACA 58.776 34.615 0.00 0.00 0.00 2.83
2556 4543 7.719193 TCCTTCAGTGATTTAGACATGAAACAA 59.281 33.333 0.00 0.00 0.00 2.83
2557 4544 8.352201 CCTTCAGTGATTTAGACATGAAACAAA 58.648 33.333 0.00 0.00 0.00 2.83
2558 4545 9.173939 CTTCAGTGATTTAGACATGAAACAAAC 57.826 33.333 0.00 0.00 0.00 2.93
2559 4546 7.648142 TCAGTGATTTAGACATGAAACAAACC 58.352 34.615 0.00 0.00 0.00 3.27
2560 4547 6.863126 CAGTGATTTAGACATGAAACAAACCC 59.137 38.462 0.00 0.00 0.00 4.11
2561 4548 6.777580 AGTGATTTAGACATGAAACAAACCCT 59.222 34.615 0.00 0.00 0.00 4.34
2562 4549 7.287696 AGTGATTTAGACATGAAACAAACCCTT 59.712 33.333 0.00 0.00 0.00 3.95
2563 4550 8.573035 GTGATTTAGACATGAAACAAACCCTTA 58.427 33.333 0.00 0.00 0.00 2.69
2564 4551 9.137459 TGATTTAGACATGAAACAAACCCTTAA 57.863 29.630 0.00 0.00 0.00 1.85
2565 4552 9.974980 GATTTAGACATGAAACAAACCCTTAAA 57.025 29.630 0.00 0.00 0.00 1.52
2570 4557 9.362151 AGACATGAAACAAACCCTTAAATTAGA 57.638 29.630 0.00 0.00 0.00 2.10
2594 4581 9.566432 AGATTTCTTTGTAATTCTCTTGTGTCT 57.434 29.630 0.00 0.00 0.00 3.41
2620 4607 0.174845 TGAACTAATCACGGCCCTCG 59.825 55.000 0.00 0.00 45.88 4.63
2621 4608 0.458669 GAACTAATCACGGCCCTCGA 59.541 55.000 0.00 0.00 42.43 4.04
2622 4609 0.175073 AACTAATCACGGCCCTCGAC 59.825 55.000 0.00 0.00 42.43 4.20
2623 4610 0.968901 ACTAATCACGGCCCTCGACA 60.969 55.000 0.00 0.00 42.43 4.35
2624 4611 0.249073 CTAATCACGGCCCTCGACAG 60.249 60.000 0.00 0.00 42.43 3.51
2625 4612 0.681887 TAATCACGGCCCTCGACAGA 60.682 55.000 0.00 0.00 42.43 3.41
2626 4613 1.541310 AATCACGGCCCTCGACAGAA 61.541 55.000 0.00 0.00 42.43 3.02
2627 4614 1.330655 ATCACGGCCCTCGACAGAAT 61.331 55.000 0.00 0.00 42.43 2.40
2628 4615 1.079127 CACGGCCCTCGACAGAATT 60.079 57.895 0.00 0.00 42.43 2.17
2629 4616 1.079127 ACGGCCCTCGACAGAATTG 60.079 57.895 0.00 0.00 42.43 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.911788 ACTTGATTAGATTGGTACATTTCATCT 57.088 29.630 0.00 0.00 39.30 2.90
41 42 9.462606 GGGATTTCCTTCTTAATTCTTACTTGA 57.537 33.333 0.00 0.00 35.95 3.02
42 43 9.467796 AGGGATTTCCTTCTTAATTCTTACTTG 57.532 33.333 0.00 0.00 45.47 3.16
60 61 1.686428 GGGCAAGAGGGAAGGGATTTC 60.686 57.143 0.00 0.00 34.93 2.17
61 62 0.336392 GGGCAAGAGGGAAGGGATTT 59.664 55.000 0.00 0.00 0.00 2.17
62 63 1.926426 CGGGCAAGAGGGAAGGGATT 61.926 60.000 0.00 0.00 0.00 3.01
63 64 2.378634 CGGGCAAGAGGGAAGGGAT 61.379 63.158 0.00 0.00 0.00 3.85
64 65 3.009115 CGGGCAAGAGGGAAGGGA 61.009 66.667 0.00 0.00 0.00 4.20
65 66 4.115199 CCGGGCAAGAGGGAAGGG 62.115 72.222 0.00 0.00 0.00 3.95
66 67 4.803908 GCCGGGCAAGAGGGAAGG 62.804 72.222 15.62 0.00 0.00 3.46
67 68 4.803908 GGCCGGGCAAGAGGGAAG 62.804 72.222 25.33 0.00 0.00 3.46
78 79 3.737172 CTTTTGCTCACGGCCGGG 61.737 66.667 31.76 28.69 40.92 5.73
79 80 3.737172 CCTTTTGCTCACGGCCGG 61.737 66.667 31.76 18.67 40.92 6.13
80 81 4.404654 GCCTTTTGCTCACGGCCG 62.405 66.667 26.86 26.86 40.92 6.13
82 83 4.056125 GGGCCTTTTGCTCACGGC 62.056 66.667 0.84 0.00 41.53 5.68
83 84 3.373565 GGGGCCTTTTGCTCACGG 61.374 66.667 0.84 0.00 44.86 4.94
84 85 3.373565 GGGGGCCTTTTGCTCACG 61.374 66.667 0.84 0.00 44.86 4.35
85 86 3.373565 CGGGGGCCTTTTGCTCAC 61.374 66.667 0.84 0.00 44.86 3.51
86 87 4.676951 CCGGGGGCCTTTTGCTCA 62.677 66.667 0.84 0.00 44.86 4.26
108 109 2.685380 AAGGAGGGTGCGAGAGGG 60.685 66.667 0.00 0.00 0.00 4.30
109 110 0.395862 TAGAAGGAGGGTGCGAGAGG 60.396 60.000 0.00 0.00 0.00 3.69
110 111 1.028905 CTAGAAGGAGGGTGCGAGAG 58.971 60.000 0.00 0.00 0.00 3.20
111 112 1.038130 GCTAGAAGGAGGGTGCGAGA 61.038 60.000 0.00 0.00 0.00 4.04
112 113 1.323271 TGCTAGAAGGAGGGTGCGAG 61.323 60.000 0.00 0.00 0.00 5.03
113 114 1.304962 TGCTAGAAGGAGGGTGCGA 60.305 57.895 0.00 0.00 0.00 5.10
114 115 1.142748 CTGCTAGAAGGAGGGTGCG 59.857 63.158 0.00 0.00 29.18 5.34
115 116 1.153269 GCTGCTAGAAGGAGGGTGC 60.153 63.158 0.00 0.00 33.92 5.01
116 117 1.142748 CGCTGCTAGAAGGAGGGTG 59.857 63.158 0.00 0.00 40.76 4.61
117 118 2.726351 GCGCTGCTAGAAGGAGGGT 61.726 63.158 12.72 0.00 45.91 4.34
118 119 2.107953 GCGCTGCTAGAAGGAGGG 59.892 66.667 0.00 7.93 46.69 4.30
119 120 2.037620 ATGGCGCTGCTAGAAGGAGG 62.038 60.000 7.64 0.00 33.92 4.30
120 121 0.676184 TATGGCGCTGCTAGAAGGAG 59.324 55.000 7.64 0.00 36.68 3.69
121 122 1.119684 TTATGGCGCTGCTAGAAGGA 58.880 50.000 7.64 0.00 0.00 3.36
122 123 1.221414 GTTATGGCGCTGCTAGAAGG 58.779 55.000 7.64 0.00 0.00 3.46
123 124 1.863454 CTGTTATGGCGCTGCTAGAAG 59.137 52.381 7.64 0.00 0.00 2.85
124 125 1.480545 TCTGTTATGGCGCTGCTAGAA 59.519 47.619 7.64 0.00 0.00 2.10
125 126 1.067669 CTCTGTTATGGCGCTGCTAGA 59.932 52.381 7.64 3.51 0.00 2.43
126 127 1.495878 CTCTGTTATGGCGCTGCTAG 58.504 55.000 7.64 0.00 0.00 3.42
127 128 0.104855 CCTCTGTTATGGCGCTGCTA 59.895 55.000 7.64 0.00 0.00 3.49
128 129 1.153289 CCTCTGTTATGGCGCTGCT 60.153 57.895 7.64 0.00 0.00 4.24
129 130 0.533755 ATCCTCTGTTATGGCGCTGC 60.534 55.000 7.64 0.00 0.00 5.25
130 131 2.802816 GTTATCCTCTGTTATGGCGCTG 59.197 50.000 7.64 0.00 0.00 5.18
131 132 2.700897 AGTTATCCTCTGTTATGGCGCT 59.299 45.455 7.64 0.00 0.00 5.92
132 133 2.802816 CAGTTATCCTCTGTTATGGCGC 59.197 50.000 0.00 0.00 0.00 6.53
133 134 4.322080 TCAGTTATCCTCTGTTATGGCG 57.678 45.455 0.00 0.00 34.86 5.69
134 135 7.573968 AAATTCAGTTATCCTCTGTTATGGC 57.426 36.000 0.00 0.00 34.86 4.40
188 189 3.751175 TGCTTTCGGGACATTTCTAACTG 59.249 43.478 0.00 0.00 0.00 3.16
200 201 2.751436 GGCTGCATGCTTTCGGGA 60.751 61.111 20.33 0.00 42.39 5.14
261 262 7.009540 CCTTCGAAATGCCAATTTTATGAGTTC 59.990 37.037 0.00 0.00 36.10 3.01
294 295 3.157087 TCATTTTGTCCCCTGCTCTTTC 58.843 45.455 0.00 0.00 0.00 2.62
325 326 1.975407 GGCAGAAGCATGGCTGTGT 60.975 57.895 0.00 0.00 44.61 3.72
329 330 2.437359 GACGGCAGAAGCATGGCT 60.437 61.111 8.19 0.00 44.61 4.75
692 697 2.253603 GTTTTACACGTACGGATCGCT 58.746 47.619 21.06 0.00 0.00 4.93
736 760 1.823899 GTCGAACCCATGCCCCATC 60.824 63.158 0.00 0.00 0.00 3.51
765 793 2.952310 GTGGTTCTTCTTGCTTTCTGGT 59.048 45.455 0.00 0.00 0.00 4.00
866 907 1.480954 CGAGGTGCGGGCCTATATATT 59.519 52.381 0.84 0.00 39.34 1.28
886 927 2.363172 GGTGAGAGGGGTGAGGCTC 61.363 68.421 7.79 7.79 0.00 4.70
1608 1670 0.466963 AGTCATGGCTCATCATGCGA 59.533 50.000 0.00 0.00 42.96 5.10
1770 3756 3.895232 ATGTCAACGTTATCCAGCTCT 57.105 42.857 0.00 0.00 0.00 4.09
1883 3870 5.898174 TCCTCGCGAGATAGTTCAAAATAA 58.102 37.500 36.59 0.00 40.84 1.40
1885 3872 4.363999 CTCCTCGCGAGATAGTTCAAAAT 58.636 43.478 36.59 0.00 41.63 1.82
1888 3875 1.676529 CCTCCTCGCGAGATAGTTCAA 59.323 52.381 36.59 10.31 41.63 2.69
1889 3876 1.309950 CCTCCTCGCGAGATAGTTCA 58.690 55.000 36.59 10.24 41.63 3.18
2028 4015 0.107017 ATGTCCAAATCCTGGCTCCG 60.107 55.000 0.00 0.00 45.98 4.63
2029 4016 1.064463 TCATGTCCAAATCCTGGCTCC 60.064 52.381 0.00 0.00 45.98 4.70
2030 4017 2.295885 CTCATGTCCAAATCCTGGCTC 58.704 52.381 0.00 0.00 45.98 4.70
2031 4018 1.064166 CCTCATGTCCAAATCCTGGCT 60.064 52.381 0.00 0.00 45.98 4.75
2032 4019 1.396653 CCTCATGTCCAAATCCTGGC 58.603 55.000 0.00 0.00 45.98 4.85
2034 4021 2.422519 CCTCCCTCATGTCCAAATCCTG 60.423 54.545 0.00 0.00 0.00 3.86
2035 4022 1.849039 CCTCCCTCATGTCCAAATCCT 59.151 52.381 0.00 0.00 0.00 3.24
2036 4023 1.752084 GCCTCCCTCATGTCCAAATCC 60.752 57.143 0.00 0.00 0.00 3.01
2037 4024 1.685148 GCCTCCCTCATGTCCAAATC 58.315 55.000 0.00 0.00 0.00 2.17
2038 4025 0.107017 CGCCTCCCTCATGTCCAAAT 60.107 55.000 0.00 0.00 0.00 2.32
2039 4026 1.198094 TCGCCTCCCTCATGTCCAAA 61.198 55.000 0.00 0.00 0.00 3.28
2040 4027 1.612146 TCGCCTCCCTCATGTCCAA 60.612 57.895 0.00 0.00 0.00 3.53
2041 4028 2.038813 TCGCCTCCCTCATGTCCA 59.961 61.111 0.00 0.00 0.00 4.02
2042 4029 2.801631 CCTCGCCTCCCTCATGTCC 61.802 68.421 0.00 0.00 0.00 4.02
2043 4030 1.330655 TTCCTCGCCTCCCTCATGTC 61.331 60.000 0.00 0.00 0.00 3.06
2044 4031 1.306141 TTCCTCGCCTCCCTCATGT 60.306 57.895 0.00 0.00 0.00 3.21
2045 4032 1.045350 TCTTCCTCGCCTCCCTCATG 61.045 60.000 0.00 0.00 0.00 3.07
2046 4033 0.105246 ATCTTCCTCGCCTCCCTCAT 60.105 55.000 0.00 0.00 0.00 2.90
2047 4034 0.556258 TATCTTCCTCGCCTCCCTCA 59.444 55.000 0.00 0.00 0.00 3.86
2048 4035 1.705873 TTATCTTCCTCGCCTCCCTC 58.294 55.000 0.00 0.00 0.00 4.30
2049 4036 2.407340 ATTATCTTCCTCGCCTCCCT 57.593 50.000 0.00 0.00 0.00 4.20
2050 4037 4.828072 ATTATTATCTTCCTCGCCTCCC 57.172 45.455 0.00 0.00 0.00 4.30
2051 4038 5.552178 ACAATTATTATCTTCCTCGCCTCC 58.448 41.667 0.00 0.00 0.00 4.30
2052 4039 6.706270 TGAACAATTATTATCTTCCTCGCCTC 59.294 38.462 0.00 0.00 0.00 4.70
2053 4040 6.591935 TGAACAATTATTATCTTCCTCGCCT 58.408 36.000 0.00 0.00 0.00 5.52
2054 4041 6.861065 TGAACAATTATTATCTTCCTCGCC 57.139 37.500 0.00 0.00 0.00 5.54
2055 4042 8.142994 TCTTGAACAATTATTATCTTCCTCGC 57.857 34.615 0.00 0.00 0.00 5.03
2056 4043 9.534565 TCTCTTGAACAATTATTATCTTCCTCG 57.465 33.333 0.00 0.00 0.00 4.63
2065 4052 9.114952 TGTGTTGTGTCTCTTGAACAATTATTA 57.885 29.630 0.00 0.00 36.31 0.98
2066 4053 7.995289 TGTGTTGTGTCTCTTGAACAATTATT 58.005 30.769 0.00 0.00 36.31 1.40
2067 4054 7.566760 TGTGTTGTGTCTCTTGAACAATTAT 57.433 32.000 0.00 0.00 36.31 1.28
2068 4055 6.993786 TGTGTTGTGTCTCTTGAACAATTA 57.006 33.333 0.00 0.00 36.31 1.40
2069 4056 5.895636 TGTGTTGTGTCTCTTGAACAATT 57.104 34.783 0.00 0.00 36.31 2.32
2070 4057 5.895636 TTGTGTTGTGTCTCTTGAACAAT 57.104 34.783 0.00 0.00 36.31 2.71
2071 4058 5.895636 ATTGTGTTGTGTCTCTTGAACAA 57.104 34.783 0.00 0.00 30.43 2.83
2072 4059 6.993786 TTATTGTGTTGTGTCTCTTGAACA 57.006 33.333 0.00 0.00 0.00 3.18
2079 4066 9.803315 TGAGACTATATTATTGTGTTGTGTCTC 57.197 33.333 0.00 0.00 43.76 3.36
2083 4070 9.689075 CGTTTGAGACTATATTATTGTGTTGTG 57.311 33.333 0.00 0.00 0.00 3.33
2084 4071 9.431887 ACGTTTGAGACTATATTATTGTGTTGT 57.568 29.630 0.00 0.00 0.00 3.32
2099 4086 9.982651 ACATATGCTAATTATACGTTTGAGACT 57.017 29.630 1.58 0.00 0.00 3.24
2134 4121 9.630098 CAGTTGATATGCAGTTTTCTTTTATGT 57.370 29.630 0.00 0.00 0.00 2.29
2135 4122 9.079833 CCAGTTGATATGCAGTTTTCTTTTATG 57.920 33.333 0.00 0.00 0.00 1.90
2136 4123 9.023962 TCCAGTTGATATGCAGTTTTCTTTTAT 57.976 29.630 0.00 0.00 0.00 1.40
2137 4124 8.296713 GTCCAGTTGATATGCAGTTTTCTTTTA 58.703 33.333 0.00 0.00 0.00 1.52
2138 4125 7.014615 AGTCCAGTTGATATGCAGTTTTCTTTT 59.985 33.333 0.00 0.00 0.00 2.27
2139 4126 6.491403 AGTCCAGTTGATATGCAGTTTTCTTT 59.509 34.615 0.00 0.00 0.00 2.52
2140 4127 6.006449 AGTCCAGTTGATATGCAGTTTTCTT 58.994 36.000 0.00 0.00 0.00 2.52
2141 4128 5.413833 CAGTCCAGTTGATATGCAGTTTTCT 59.586 40.000 0.00 0.00 0.00 2.52
2142 4129 5.392380 CCAGTCCAGTTGATATGCAGTTTTC 60.392 44.000 0.00 0.00 0.00 2.29
2143 4130 4.460382 CCAGTCCAGTTGATATGCAGTTTT 59.540 41.667 0.00 0.00 0.00 2.43
2144 4131 4.012374 CCAGTCCAGTTGATATGCAGTTT 58.988 43.478 0.00 0.00 0.00 2.66
2145 4132 3.614092 CCAGTCCAGTTGATATGCAGTT 58.386 45.455 0.00 0.00 0.00 3.16
2146 4133 2.092753 CCCAGTCCAGTTGATATGCAGT 60.093 50.000 0.00 0.00 0.00 4.40
2147 4134 2.569059 CCCAGTCCAGTTGATATGCAG 58.431 52.381 0.00 0.00 0.00 4.41
2148 4135 1.212688 CCCCAGTCCAGTTGATATGCA 59.787 52.381 0.00 0.00 0.00 3.96
2149 4136 1.212935 ACCCCAGTCCAGTTGATATGC 59.787 52.381 0.00 0.00 0.00 3.14
2150 4137 3.282021 CAACCCCAGTCCAGTTGATATG 58.718 50.000 0.00 0.00 42.76 1.78
2151 4138 2.242196 CCAACCCCAGTCCAGTTGATAT 59.758 50.000 3.79 0.00 42.76 1.63
2152 4139 1.633432 CCAACCCCAGTCCAGTTGATA 59.367 52.381 3.79 0.00 42.76 2.15
2153 4140 0.405585 CCAACCCCAGTCCAGTTGAT 59.594 55.000 3.79 0.00 42.76 2.57
2154 4141 0.696143 TCCAACCCCAGTCCAGTTGA 60.696 55.000 3.79 0.00 42.76 3.18
2155 4142 0.184933 TTCCAACCCCAGTCCAGTTG 59.815 55.000 0.00 0.00 40.42 3.16
2156 4143 1.158007 ATTCCAACCCCAGTCCAGTT 58.842 50.000 0.00 0.00 0.00 3.16
2157 4144 1.158007 AATTCCAACCCCAGTCCAGT 58.842 50.000 0.00 0.00 0.00 4.00
2158 4145 2.945890 GCTAATTCCAACCCCAGTCCAG 60.946 54.545 0.00 0.00 0.00 3.86
2159 4146 1.005450 GCTAATTCCAACCCCAGTCCA 59.995 52.381 0.00 0.00 0.00 4.02
2160 4147 1.005450 TGCTAATTCCAACCCCAGTCC 59.995 52.381 0.00 0.00 0.00 3.85
2161 4148 2.507407 TGCTAATTCCAACCCCAGTC 57.493 50.000 0.00 0.00 0.00 3.51
2162 4149 3.473113 AATGCTAATTCCAACCCCAGT 57.527 42.857 0.00 0.00 0.00 4.00
2163 4150 4.956075 AGTAAATGCTAATTCCAACCCCAG 59.044 41.667 0.00 0.00 0.00 4.45
2164 4151 4.941713 AGTAAATGCTAATTCCAACCCCA 58.058 39.130 0.00 0.00 0.00 4.96
2165 4152 4.341235 GGAGTAAATGCTAATTCCAACCCC 59.659 45.833 0.00 0.00 0.00 4.95
2166 4153 5.201243 AGGAGTAAATGCTAATTCCAACCC 58.799 41.667 0.00 0.00 0.00 4.11
2167 4154 6.183360 GGAAGGAGTAAATGCTAATTCCAACC 60.183 42.308 8.43 0.00 35.20 3.77
2168 4155 6.377146 TGGAAGGAGTAAATGCTAATTCCAAC 59.623 38.462 11.80 0.00 38.83 3.77
2169 4156 6.489603 TGGAAGGAGTAAATGCTAATTCCAA 58.510 36.000 11.80 1.31 38.83 3.53
2170 4157 6.073447 TGGAAGGAGTAAATGCTAATTCCA 57.927 37.500 10.75 10.75 39.15 3.53
2171 4158 7.255625 GGAATGGAAGGAGTAAATGCTAATTCC 60.256 40.741 0.00 0.00 37.09 3.01
2172 4159 7.503902 AGGAATGGAAGGAGTAAATGCTAATTC 59.496 37.037 0.00 0.00 0.00 2.17
2173 4160 7.357471 AGGAATGGAAGGAGTAAATGCTAATT 58.643 34.615 0.00 0.00 0.00 1.40
2174 4161 6.915786 AGGAATGGAAGGAGTAAATGCTAAT 58.084 36.000 0.00 0.00 0.00 1.73
2175 4162 6.327386 AGGAATGGAAGGAGTAAATGCTAA 57.673 37.500 0.00 0.00 0.00 3.09
2176 4163 5.975988 AGGAATGGAAGGAGTAAATGCTA 57.024 39.130 0.00 0.00 0.00 3.49
2177 4164 4.870021 AGGAATGGAAGGAGTAAATGCT 57.130 40.909 0.00 0.00 0.00 3.79
2178 4165 5.921962 AAAGGAATGGAAGGAGTAAATGC 57.078 39.130 0.00 0.00 0.00 3.56
2179 4166 9.025041 ACTAAAAAGGAATGGAAGGAGTAAATG 57.975 33.333 0.00 0.00 0.00 2.32
2180 4167 9.244292 GACTAAAAAGGAATGGAAGGAGTAAAT 57.756 33.333 0.00 0.00 0.00 1.40
2181 4168 8.445588 AGACTAAAAAGGAATGGAAGGAGTAAA 58.554 33.333 0.00 0.00 0.00 2.01
2182 4169 7.883311 CAGACTAAAAAGGAATGGAAGGAGTAA 59.117 37.037 0.00 0.00 0.00 2.24
2183 4170 7.394816 CAGACTAAAAAGGAATGGAAGGAGTA 58.605 38.462 0.00 0.00 0.00 2.59
2184 4171 6.241645 CAGACTAAAAAGGAATGGAAGGAGT 58.758 40.000 0.00 0.00 0.00 3.85
2185 4172 5.124617 GCAGACTAAAAAGGAATGGAAGGAG 59.875 44.000 0.00 0.00 0.00 3.69
2186 4173 5.010282 GCAGACTAAAAAGGAATGGAAGGA 58.990 41.667 0.00 0.00 0.00 3.36
2187 4174 4.766891 TGCAGACTAAAAAGGAATGGAAGG 59.233 41.667 0.00 0.00 0.00 3.46
2188 4175 5.964958 TGCAGACTAAAAAGGAATGGAAG 57.035 39.130 0.00 0.00 0.00 3.46
2189 4176 9.693739 TTATATGCAGACTAAAAAGGAATGGAA 57.306 29.630 0.00 0.00 0.00 3.53
2190 4177 9.342308 CTTATATGCAGACTAAAAAGGAATGGA 57.658 33.333 0.00 0.00 0.00 3.41
2191 4178 8.078596 GCTTATATGCAGACTAAAAAGGAATGG 58.921 37.037 5.76 0.00 0.00 3.16
2192 4179 8.844244 AGCTTATATGCAGACTAAAAAGGAATG 58.156 33.333 12.65 0.00 34.99 2.67
2193 4180 8.986929 AGCTTATATGCAGACTAAAAAGGAAT 57.013 30.769 12.65 0.00 34.99 3.01
2194 4181 8.807948 AAGCTTATATGCAGACTAAAAAGGAA 57.192 30.769 12.65 0.00 34.99 3.36
2195 4182 8.677300 CAAAGCTTATATGCAGACTAAAAAGGA 58.323 33.333 12.65 0.00 34.99 3.36
2196 4183 7.917505 CCAAAGCTTATATGCAGACTAAAAAGG 59.082 37.037 12.65 0.00 34.99 3.11
2197 4184 8.462016 ACCAAAGCTTATATGCAGACTAAAAAG 58.538 33.333 12.65 0.00 34.99 2.27
2198 4185 8.348285 ACCAAAGCTTATATGCAGACTAAAAA 57.652 30.769 12.65 0.00 34.99 1.94
2199 4186 7.609918 TGACCAAAGCTTATATGCAGACTAAAA 59.390 33.333 12.65 0.00 34.99 1.52
2200 4187 7.109501 TGACCAAAGCTTATATGCAGACTAAA 58.890 34.615 12.65 0.00 34.99 1.85
2201 4188 6.649155 TGACCAAAGCTTATATGCAGACTAA 58.351 36.000 12.65 0.00 34.99 2.24
2202 4189 6.233905 TGACCAAAGCTTATATGCAGACTA 57.766 37.500 12.65 0.00 34.99 2.59
2203 4190 5.102953 TGACCAAAGCTTATATGCAGACT 57.897 39.130 12.65 0.00 34.99 3.24
2204 4191 5.818136 TTGACCAAAGCTTATATGCAGAC 57.182 39.130 12.65 1.06 34.99 3.51
2205 4192 6.441093 CTTTGACCAAAGCTTATATGCAGA 57.559 37.500 12.65 0.00 40.94 4.26
2211 4198 8.691797 AAAGTTTGACTTTGACCAAAGCTTATA 58.308 29.630 19.14 2.77 45.83 0.98
2212 4199 7.555965 AAAGTTTGACTTTGACCAAAGCTTAT 58.444 30.769 19.14 3.33 45.83 1.73
2213 4200 6.930731 AAAGTTTGACTTTGACCAAAGCTTA 58.069 32.000 19.14 6.23 45.83 3.09
2214 4201 5.793817 AAAGTTTGACTTTGACCAAAGCTT 58.206 33.333 19.14 12.23 45.83 3.74
2215 4202 5.405935 AAAGTTTGACTTTGACCAAAGCT 57.594 34.783 19.14 9.07 45.83 3.74
2377 4364 9.134734 TCAAAGTCAAACATTGTTAACTTTGAC 57.865 29.630 35.36 28.07 46.09 3.18
2379 4366 8.379902 GGTCAAAGTCAAACATTGTTAACTTTG 58.620 33.333 33.62 33.62 45.12 2.77
2380 4367 8.091449 TGGTCAAAGTCAAACATTGTTAACTTT 58.909 29.630 23.76 23.76 36.35 2.66
2381 4368 7.607250 TGGTCAAAGTCAAACATTGTTAACTT 58.393 30.769 17.83 17.83 29.78 2.66
2382 4369 7.164230 TGGTCAAAGTCAAACATTGTTAACT 57.836 32.000 7.22 7.02 29.78 2.24
2383 4370 7.820044 TTGGTCAAAGTCAAACATTGTTAAC 57.180 32.000 1.76 0.00 29.78 2.01
2384 4371 8.245701 GTTTGGTCAAAGTCAAACATTGTTAA 57.754 30.769 1.76 0.00 46.88 2.01
2385 4372 7.820044 GTTTGGTCAAAGTCAAACATTGTTA 57.180 32.000 1.76 0.00 46.88 2.41
2386 4373 6.720012 GTTTGGTCAAAGTCAAACATTGTT 57.280 33.333 12.28 0.00 46.88 2.83
2392 4379 7.328493 GCATATAAGGTTTGGTCAAAGTCAAAC 59.672 37.037 9.59 9.59 46.92 2.93
2393 4380 7.014711 TGCATATAAGGTTTGGTCAAAGTCAAA 59.985 33.333 0.00 0.00 0.00 2.69
2394 4381 6.491745 TGCATATAAGGTTTGGTCAAAGTCAA 59.508 34.615 0.00 0.00 0.00 3.18
2395 4382 6.007076 TGCATATAAGGTTTGGTCAAAGTCA 58.993 36.000 0.00 0.00 0.00 3.41
2396 4383 6.374333 TCTGCATATAAGGTTTGGTCAAAGTC 59.626 38.462 0.00 0.00 0.00 3.01
2397 4384 6.151144 GTCTGCATATAAGGTTTGGTCAAAGT 59.849 38.462 0.00 0.00 0.00 2.66
2398 4385 6.375455 AGTCTGCATATAAGGTTTGGTCAAAG 59.625 38.462 0.00 0.00 0.00 2.77
2399 4386 6.245408 AGTCTGCATATAAGGTTTGGTCAAA 58.755 36.000 0.00 0.00 0.00 2.69
2400 4387 5.815581 AGTCTGCATATAAGGTTTGGTCAA 58.184 37.500 0.00 0.00 0.00 3.18
2401 4388 5.435686 AGTCTGCATATAAGGTTTGGTCA 57.564 39.130 0.00 0.00 0.00 4.02
2402 4389 7.859325 TTTAGTCTGCATATAAGGTTTGGTC 57.141 36.000 0.00 0.00 0.00 4.02
2403 4390 8.644374 TTTTTAGTCTGCATATAAGGTTTGGT 57.356 30.769 0.00 0.00 0.00 3.67
2404 4391 8.956426 TCTTTTTAGTCTGCATATAAGGTTTGG 58.044 33.333 0.00 0.00 0.00 3.28
2409 4396 9.956720 CCATTTCTTTTTAGTCTGCATATAAGG 57.043 33.333 0.00 0.00 0.00 2.69
2413 4400 9.118300 CTCTCCATTTCTTTTTAGTCTGCATAT 57.882 33.333 0.00 0.00 0.00 1.78
2414 4401 8.321353 TCTCTCCATTTCTTTTTAGTCTGCATA 58.679 33.333 0.00 0.00 0.00 3.14
2415 4402 7.170965 TCTCTCCATTTCTTTTTAGTCTGCAT 58.829 34.615 0.00 0.00 0.00 3.96
2416 4403 6.533730 TCTCTCCATTTCTTTTTAGTCTGCA 58.466 36.000 0.00 0.00 0.00 4.41
2417 4404 6.652900 ACTCTCTCCATTTCTTTTTAGTCTGC 59.347 38.462 0.00 0.00 0.00 4.26
2418 4405 9.145865 GTACTCTCTCCATTTCTTTTTAGTCTG 57.854 37.037 0.00 0.00 0.00 3.51
2419 4406 8.871125 TGTACTCTCTCCATTTCTTTTTAGTCT 58.129 33.333 0.00 0.00 0.00 3.24
2420 4407 9.490379 TTGTACTCTCTCCATTTCTTTTTAGTC 57.510 33.333 0.00 0.00 0.00 2.59
2421 4408 9.847224 TTTGTACTCTCTCCATTTCTTTTTAGT 57.153 29.630 0.00 0.00 0.00 2.24
2424 4411 8.980481 TCTTTGTACTCTCTCCATTTCTTTTT 57.020 30.769 0.00 0.00 0.00 1.94
2425 4412 9.579932 AATCTTTGTACTCTCTCCATTTCTTTT 57.420 29.630 0.00 0.00 0.00 2.27
2426 4413 9.579932 AAATCTTTGTACTCTCTCCATTTCTTT 57.420 29.630 0.00 0.00 0.00 2.52
2427 4414 9.007901 CAAATCTTTGTACTCTCTCCATTTCTT 57.992 33.333 0.00 0.00 33.59 2.52
2428 4415 8.558973 CAAATCTTTGTACTCTCTCCATTTCT 57.441 34.615 0.00 0.00 33.59 2.52
2443 4430 7.879160 ATTGTCATGGCAAATACAAATCTTTGT 59.121 29.630 18.05 12.51 41.64 2.83
2444 4431 7.655236 TTGTCATGGCAAATACAAATCTTTG 57.345 32.000 11.03 1.19 43.62 2.77
2445 4432 8.851541 AATTGTCATGGCAAATACAAATCTTT 57.148 26.923 18.05 0.00 35.63 2.52
2446 4433 8.723311 CAAATTGTCATGGCAAATACAAATCTT 58.277 29.630 18.05 0.07 35.63 2.40
2447 4434 8.095792 TCAAATTGTCATGGCAAATACAAATCT 58.904 29.630 18.05 0.00 35.63 2.40
2448 4435 8.254178 TCAAATTGTCATGGCAAATACAAATC 57.746 30.769 18.05 0.00 35.63 2.17
2449 4436 7.148373 GCTCAAATTGTCATGGCAAATACAAAT 60.148 33.333 18.05 0.00 35.63 2.32
2450 4437 6.147492 GCTCAAATTGTCATGGCAAATACAAA 59.853 34.615 18.05 0.26 35.63 2.83
2451 4438 5.638657 GCTCAAATTGTCATGGCAAATACAA 59.361 36.000 18.05 7.34 36.37 2.41
2452 4439 5.047164 AGCTCAAATTGTCATGGCAAATACA 60.047 36.000 18.05 0.00 31.63 2.29
2453 4440 5.413499 AGCTCAAATTGTCATGGCAAATAC 58.587 37.500 18.05 3.98 31.63 1.89
2454 4441 5.664294 AGCTCAAATTGTCATGGCAAATA 57.336 34.783 18.05 0.00 31.63 1.40
2455 4442 4.546829 AGCTCAAATTGTCATGGCAAAT 57.453 36.364 18.05 5.66 31.63 2.32
2456 4443 4.766373 TCTAGCTCAAATTGTCATGGCAAA 59.234 37.500 18.05 0.00 31.63 3.68
2457 4444 4.334552 TCTAGCTCAAATTGTCATGGCAA 58.665 39.130 16.33 16.33 0.00 4.52
2458 4445 3.954200 TCTAGCTCAAATTGTCATGGCA 58.046 40.909 0.00 0.00 0.00 4.92
2459 4446 4.792057 GCATCTAGCTCAAATTGTCATGGC 60.792 45.833 0.00 0.00 41.15 4.40
2460 4447 4.337274 TGCATCTAGCTCAAATTGTCATGG 59.663 41.667 0.00 0.00 45.94 3.66
2461 4448 5.494632 TGCATCTAGCTCAAATTGTCATG 57.505 39.130 0.00 0.00 45.94 3.07
2462 4449 6.461092 CCATTGCATCTAGCTCAAATTGTCAT 60.461 38.462 0.00 0.00 45.94 3.06
2463 4450 5.163591 CCATTGCATCTAGCTCAAATTGTCA 60.164 40.000 0.00 0.00 45.94 3.58
2464 4451 5.279384 CCATTGCATCTAGCTCAAATTGTC 58.721 41.667 0.00 0.00 45.94 3.18
2465 4452 4.098960 CCCATTGCATCTAGCTCAAATTGT 59.901 41.667 0.00 0.00 45.94 2.71
2466 4453 4.617959 CCCATTGCATCTAGCTCAAATTG 58.382 43.478 0.00 0.00 45.94 2.32
2467 4454 3.069158 GCCCATTGCATCTAGCTCAAATT 59.931 43.478 0.00 0.00 45.94 1.82
2468 4455 2.626743 GCCCATTGCATCTAGCTCAAAT 59.373 45.455 0.00 0.00 45.94 2.32
2469 4456 2.026641 GCCCATTGCATCTAGCTCAAA 58.973 47.619 0.00 0.00 45.94 2.69
2470 4457 1.213678 AGCCCATTGCATCTAGCTCAA 59.786 47.619 0.00 0.00 45.94 3.02
2471 4458 0.841961 AGCCCATTGCATCTAGCTCA 59.158 50.000 0.00 0.00 45.94 4.26
2472 4459 1.607628 CAAGCCCATTGCATCTAGCTC 59.392 52.381 0.00 0.00 45.94 4.09
2473 4460 1.213678 TCAAGCCCATTGCATCTAGCT 59.786 47.619 0.00 0.00 45.94 3.32
2474 4461 1.683943 TCAAGCCCATTGCATCTAGC 58.316 50.000 0.00 0.00 44.83 3.42
2475 4462 4.724074 TTTTCAAGCCCATTGCATCTAG 57.276 40.909 0.00 0.00 44.83 2.43
2476 4463 4.617995 CGTTTTTCAAGCCCATTGCATCTA 60.618 41.667 0.00 0.00 44.83 1.98
2477 4464 3.667360 GTTTTTCAAGCCCATTGCATCT 58.333 40.909 0.00 0.00 44.83 2.90
2478 4465 2.412770 CGTTTTTCAAGCCCATTGCATC 59.587 45.455 0.00 0.00 44.83 3.91
2479 4466 2.036992 TCGTTTTTCAAGCCCATTGCAT 59.963 40.909 0.00 0.00 44.83 3.96
2480 4467 1.410517 TCGTTTTTCAAGCCCATTGCA 59.589 42.857 0.00 0.00 44.83 4.08
2481 4468 2.147436 TCGTTTTTCAAGCCCATTGC 57.853 45.000 0.00 0.00 38.89 3.56
2482 4469 5.868801 ACATATTCGTTTTTCAAGCCCATTG 59.131 36.000 0.00 0.00 40.52 2.82
2483 4470 6.036577 ACATATTCGTTTTTCAAGCCCATT 57.963 33.333 0.00 0.00 0.00 3.16
2484 4471 5.659440 ACATATTCGTTTTTCAAGCCCAT 57.341 34.783 0.00 0.00 0.00 4.00
2485 4472 5.461032 AACATATTCGTTTTTCAAGCCCA 57.539 34.783 0.00 0.00 0.00 5.36
2486 4473 6.779115 AAAACATATTCGTTTTTCAAGCCC 57.221 33.333 0.00 0.00 44.61 5.19
2487 4474 8.515473 ACTAAAACATATTCGTTTTTCAAGCC 57.485 30.769 8.66 0.00 44.61 4.35
2488 4475 9.777843 CAACTAAAACATATTCGTTTTTCAAGC 57.222 29.630 8.66 0.00 44.61 4.01
2509 4496 9.877178 GAAGGATGAAGAGAAAGAATACAACTA 57.123 33.333 0.00 0.00 0.00 2.24
2510 4497 8.378565 TGAAGGATGAAGAGAAAGAATACAACT 58.621 33.333 0.00 0.00 0.00 3.16
2511 4498 8.553459 TGAAGGATGAAGAGAAAGAATACAAC 57.447 34.615 0.00 0.00 0.00 3.32
2512 4499 8.378565 ACTGAAGGATGAAGAGAAAGAATACAA 58.621 33.333 0.00 0.00 0.00 2.41
2513 4500 7.821359 CACTGAAGGATGAAGAGAAAGAATACA 59.179 37.037 0.00 0.00 0.00 2.29
2514 4501 8.037758 TCACTGAAGGATGAAGAGAAAGAATAC 58.962 37.037 0.00 0.00 0.00 1.89
2515 4502 8.138928 TCACTGAAGGATGAAGAGAAAGAATA 57.861 34.615 0.00 0.00 0.00 1.75
2516 4503 7.013823 TCACTGAAGGATGAAGAGAAAGAAT 57.986 36.000 0.00 0.00 0.00 2.40
2517 4504 6.425210 TCACTGAAGGATGAAGAGAAAGAA 57.575 37.500 0.00 0.00 0.00 2.52
2518 4505 6.617782 ATCACTGAAGGATGAAGAGAAAGA 57.382 37.500 0.00 0.00 0.00 2.52
2519 4506 7.684937 AAATCACTGAAGGATGAAGAGAAAG 57.315 36.000 0.00 0.00 0.00 2.62
2520 4507 8.597167 TCTAAATCACTGAAGGATGAAGAGAAA 58.403 33.333 0.00 0.00 0.00 2.52
2521 4508 8.037758 GTCTAAATCACTGAAGGATGAAGAGAA 58.962 37.037 0.00 0.00 0.00 2.87
2522 4509 7.179160 TGTCTAAATCACTGAAGGATGAAGAGA 59.821 37.037 0.00 0.00 0.00 3.10
2523 4510 7.326454 TGTCTAAATCACTGAAGGATGAAGAG 58.674 38.462 0.00 0.00 0.00 2.85
2524 4511 7.244886 TGTCTAAATCACTGAAGGATGAAGA 57.755 36.000 0.00 0.00 0.00 2.87
2525 4512 7.767659 TCATGTCTAAATCACTGAAGGATGAAG 59.232 37.037 0.00 0.00 0.00 3.02
2526 4513 7.623630 TCATGTCTAAATCACTGAAGGATGAA 58.376 34.615 0.00 0.00 0.00 2.57
2527 4514 7.186570 TCATGTCTAAATCACTGAAGGATGA 57.813 36.000 0.00 0.00 0.00 2.92
2528 4515 7.854557 TTCATGTCTAAATCACTGAAGGATG 57.145 36.000 0.00 0.00 0.00 3.51
2529 4516 7.884877 TGTTTCATGTCTAAATCACTGAAGGAT 59.115 33.333 0.00 0.00 0.00 3.24
2530 4517 7.223584 TGTTTCATGTCTAAATCACTGAAGGA 58.776 34.615 0.00 0.00 0.00 3.36
2531 4518 7.439157 TGTTTCATGTCTAAATCACTGAAGG 57.561 36.000 0.00 0.00 0.00 3.46
2532 4519 9.173939 GTTTGTTTCATGTCTAAATCACTGAAG 57.826 33.333 0.00 0.00 0.00 3.02
2533 4520 8.134895 GGTTTGTTTCATGTCTAAATCACTGAA 58.865 33.333 0.00 0.00 0.00 3.02
2534 4521 7.255451 GGGTTTGTTTCATGTCTAAATCACTGA 60.255 37.037 0.00 0.00 0.00 3.41
2535 4522 6.863126 GGGTTTGTTTCATGTCTAAATCACTG 59.137 38.462 0.00 0.00 0.00 3.66
2536 4523 6.777580 AGGGTTTGTTTCATGTCTAAATCACT 59.222 34.615 0.00 0.00 0.00 3.41
2537 4524 6.981722 AGGGTTTGTTTCATGTCTAAATCAC 58.018 36.000 0.00 0.00 0.00 3.06
2538 4525 7.595819 AAGGGTTTGTTTCATGTCTAAATCA 57.404 32.000 0.00 0.00 0.00 2.57
2539 4526 9.974980 TTTAAGGGTTTGTTTCATGTCTAAATC 57.025 29.630 0.00 0.00 0.00 2.17
2544 4531 9.362151 TCTAATTTAAGGGTTTGTTTCATGTCT 57.638 29.630 0.00 0.00 0.00 3.41
2568 4555 9.566432 AGACACAAGAGAATTACAAAGAAATCT 57.434 29.630 0.00 0.00 0.00 2.40
2601 4588 0.174845 CGAGGGCCGTGATTAGTTCA 59.825 55.000 0.65 0.00 0.00 3.18
2602 4589 0.458669 TCGAGGGCCGTGATTAGTTC 59.541 55.000 0.65 0.00 39.75 3.01
2603 4590 0.175073 GTCGAGGGCCGTGATTAGTT 59.825 55.000 0.65 0.00 39.75 2.24
2604 4591 0.968901 TGTCGAGGGCCGTGATTAGT 60.969 55.000 0.65 0.00 39.75 2.24
2605 4592 0.249073 CTGTCGAGGGCCGTGATTAG 60.249 60.000 0.65 0.00 39.75 1.73
2606 4593 0.681887 TCTGTCGAGGGCCGTGATTA 60.682 55.000 0.65 0.00 39.75 1.75
2607 4594 1.541310 TTCTGTCGAGGGCCGTGATT 61.541 55.000 0.65 0.00 39.75 2.57
2608 4595 1.330655 ATTCTGTCGAGGGCCGTGAT 61.331 55.000 0.65 0.00 39.75 3.06
2609 4596 1.541310 AATTCTGTCGAGGGCCGTGA 61.541 55.000 0.65 0.00 39.75 4.35
2610 4597 1.079127 AATTCTGTCGAGGGCCGTG 60.079 57.895 0.65 0.00 39.75 4.94
2611 4598 1.079127 CAATTCTGTCGAGGGCCGT 60.079 57.895 0.00 0.00 39.75 5.68
2612 4599 3.799753 CAATTCTGTCGAGGGCCG 58.200 61.111 0.00 0.00 40.25 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.