>input_sequence_73517
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--------------ATGGAGGTCGCCAAGCCAGGGTCGTCCAAGTGCATGTCCCCGATGGGGAGCTTCAAGCTGAGCCTG
CTCGCCTGCGGCCAGTGCAAGGCCACCACCGTGTCGCCCCCGGACTCCCCCACCGGCGCTGGCGCGAGGTCCGGGCGGTC
GCTGTCGTCCTCGGCGTCGTCCTCCGCGGGGACGTC------CCGCGGCCGCGAGCGCGACCGACAGGCGGAGCTGCGGG
AGATCTTCCGCCACTTCGACCGCGACATGGACGGCCGGATCTCGGGCCGGGAGCTGGGCGAGTTCTTCGCGTCCATGGGC
GACGGCGGCGCAAAAGCCGCGCTGGAGCTGGACGCGGCCAGCTCCGGCGGCGGTGGCGACCTCATGCTGGGGTTCGAGGA
CTTCGTCAGGATCGTGGAGCGCAAGGGCGGGGAGGAGGAGGAGCGCGAGGACCTGC-GCCGCGCGTTCGAGGCCTTCGAG
GCCGTCAAGGGCTCCGGCCGGATCACGCCGCGCGGCCTGCAGCGCGTGCTCAGCCAGCTCGGCGACGACCCGTCCGTCGC
CGAGTGCGAGGCCATGATACGCGCCTACGACGACGACGGCGACGGCGAGCTTGATTTCCACGATTTCCATCGCATGATGA
GCCATGACTAG---------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G301300
GTAAACCTCTCTATATAAAGAGATGAAATGTACCAATCTAATCAAGTAAGAATTAAGAAGGAAATCCCTTCCCTCTTGCC
CGGCCGTGAGCAAAAGGCCCCCGGCCGGCCCTCTCGCACCCTCCTTCTAGCAGCGCCATAACAGAGGATAACTGAATTTA
TCCTCCCTTGCAGCCTGATATAGGAGATCAGTTAGAAATGTCCCGAAAGCATGCAGCCAAGGAAACGACAAGCAGCTAGG
GGCGAAATGTTCAGTATTTAAGAACTCATAAAATTGGCATTTCGAAGGTTCTCAGAAAGAGCAGGGGACAAAATGAATGG
AAAAAACACAGCCATGCTTCTGCCGTCATGGTAGCAATAGGAAACGGAGCTAGTTACCTGAAGCAGATCGATTAGAGAAT
TGGATCTGACACTCGATATCACTACTCGCTAGTCTCACCACTGCCATGCTGCATCTTGCATACGACGACACGTACCTATA
GCTAGCTTACTCAAGGCGGTGCTATCCATGTTTTCTTTGGATATCCGATCGAATTACTTGTATGTT--CTCTCCTTACTT
AAGCTCACGTACGTGTATACCTATGTTTCAGTATCTGCAAGGCTTAGCTATGCCAATTTTAAACCAGT--TTGAAACTGA
CGGCGATCTGTAAAATCACGCTAAAAATGTCACTCCTGACTCCTCCCACACAGGCTAG-------------------CGA
TCCGTACGTGTAAAACGCAAGTCAGCAAGCGAGCATGGAGATGGGGC----ATGGGTTCGACCGATCCTTCCACCAGAAA
GCAAGAAGAACCACAAAA-GTCGGGTGAAATTTCCC-CCGCTGCAGGCCGTAAAATGCTG-----------CCCATCGCA
TTGGACTGCTTCGCCTTTCTCCCCCTAATATATAGGCCCGCACCTCGAGCCTCACCCCTCTCACCGCA--CGCGCGCGCA
GACGCAGACTTCACTAGCTTAGCTTTCGCAC------------AGAGAATTCCAAAGCTTTCCAGCTTGGTAGCGTCGCG
GGCCGACGGCGAGCATGGAGGTCGCCAAGCCAGGGTCGTCCAAGTGCATGTCCCCGATGGGGAGCTTCAAGCTGAGCCTG
CTCGCCTGCGGCCAGTGCAAGGCCACCACCGTGTCGCCCCCGGACTCCCCCACCGGCGCTGGCGCGAGGTCCGGGCGGTC
GCTGTCGTCCTCGGCGTCGTCCTCCGCGGGGACGTC------CCGCGGCCGCGAGCGCGACCGACAGGCGGAGCTGCGGG
AGATCTTCCGCCACTTCGACCGCGACATGGACGGCCGGATCTCGGGCCGGGAGCTGGGCGAGTTCTTCGCGTCCATGGGC
GACGGCGGCGCAAAAGCCGCGCTGGAGCTGGACGCGGCCAGCTCCGGCGGCGGTGGCGACCTCATGCTGGGGTTCGAGGA
CTTCGTCAGGATCGTGGAGCGCAAGGGCGGGGAGGAGGAGGAGCGCGAGGACCTGC-GCCGCGCGTTCGAGGCCTTCGAG
GCCGTCAAGGGCTCCGGCCGGATCACGCCGCGCGGCCTGCAGCGCGTGCTCAGCCAGCTCGGCGACGACCCGTCCGTCGC
CGAGTGCGAGGCCATGATACGCGCCTACGACGACGACGGCGACGGCGAGCTTGATTTCCACGATTTCCATCGCATGATGA
GCCATGACTAGCTGCCTGTGGCG-------CGGCTGGGCATCACTTTGTTCCTTCATCCGTGTGTTTCCAGTTTCCAGTG
CGTGAGTGTGTGTGGTTTGTGTGGCGCGCGCGCCAGTTTGAACGTG----------------------------------
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-------------------------------------------CTATGCTGTTTGGGTGTTTCTGCTTTTACAAGAGAGC
TGGATAACGTTGACATATTGGAGATCACGGCCTCATGCAAATTCAG-ATGATATGCAAATCTGTAATCCATGCAAATTTT
AATTGACCAAATAGCATCATGATTTTTTTTTATTTTGAACTATCTCGCGAGGAGGGGGGTGTTCCACCTAGATCCACTAC
TCAAAGTATCACGCAGTGGCAAGTGCTACAAGGCCTTGTCAGTGCAAGAGGAGTTGTTTTTCTGATGACATCGACGAGGT
GGCGGCGGCGAGGGCGGAGCCAGGATTTGGACATGAGGGAGGCGAGGAAGATAATAATTGTTCAAGAGACACAACACAAT
AATATAGTCTCAAACGTATAATTAGCATATGTTTGTTAATACATAAAAGAAAACTGCATATCAACTGGACTGGGGTTGGA
ATTAGCATTTACTCCTTCCATTCCTTTTTAGTCTGCATATAAGCTTTGGTCAAAGTCAAACTTTGTAAAGTTTGACCAAC
TTTATAGGAGAAAATATCAACATCTAAAATACTAAAGCTATATGGTATGAAAATTAATTTCATGATGCATCTAACAATAT
TGATTTCATATTATGAATCTCGATATATTTTTCTACAAACTTAGTCAAAGTTAACAATGTTTGACTTTGACCAAACCTTA
TATGCAGACTAAAAAGAAATGGAGAGAGTACAAAGATTTGTATTTGCCATGACAATTTGAGCTAGATGCAATGGGCTTGA
AAAACGAATATGTTTTAGTTGTATTCTTTCTCTTCATCCTTCAGTGATTTAGACATGAAACAAACCCTTAAATTAGATTT
CTTTGTAATTCTCTTGTGTCTAATTAGTGAACTAATCACGGCCCTCGACAGAATTG
>chr7D_144
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---------------------------------------------------------------GAGGATAACTGAATTTA
TCCTCCCTTGCAGCCTGATATAGGAGATTAGTTAGAAATGCCCCGAAAGCATGCAGCCAAGGAAACGACAAGCAGCTAGG
GGCGAAATGTTCAGTATTTAATAACTCATAAAATTGGCATTTCGAAGGTTCTCAAAAAGAGCAGGGGACAAAATGAATGG
AAAAAGCACGGCCATGCTTCTGCCGTCATGGTAGCAATAGGAAACGGAGCTAGTTACCTGAAGCAGATCGATTAGAGAAT
TGGATCTGACACTCGATATCACTACTCGCTAGTCTCACCACTGCCATGCTGCATCTTGCATACGACGACACGTACCTATA
GCTAGCTTACTCAAGGCGGTGCTATCCATGTTTTCTTTGGATATCCGATCGAATTACTTGTATGTT--CTCTCCTTACTT
AAGCTCACGTACGTGTATACCTATGTTTCAGTATCTGCAAGGCTTAGCTATGCCAATTTTAAACCAGT--TTGAAACTGA
CGGCGATCTGTAAAATCACGCTAAAAATGTCACTCCTGACTCCTCCCACACAGGCTGG-------------------CGA
TCCGTACGTGTAAAACGCAACTCAGCAAGCG-------------GGC----ATGGGTTCGACCGATCCTTCCGCCAGAAA
GCAAGAAGAACCACAAAA-GTCGGGTGAAATTTCCG-CCGCTGCAGGCCGTAAAATGCTG-----------CCCATCGCA
TTGGACTGCTTCGCCTTTCTCCCCCTTATATATAGGCCCGCACCTCAAGCCTCACCCCTCTCACCGCA--CGCGCGCGCA
GACGCAGACTTCACTAGCTTAGCTTTCGCAC------------AGAGAATTCCAAAGCTTTCCAGCTTGGTAGCGTCGCG
GGCCGACGGCGAGCATGGAGGTCGCCAAGCCAGGGTCGTCCAAGCGCATGTCCCCGATGGGGAGCTTCAAGCTGAGCCTG
CTCGCCTGCGGCCAGTGCAAGGCCACCACCGTGTCGCCCCCGGACTCCCCCACCGGCGCTGGCGCGAGGTCCGGGCGGTC
GCTGTCGTCCTCGGCGTCGTCCTCCGCGGGGACGTC------CCGCGGCCGCGAGCGCGACCGCCAGGCGGAGCTGCCGG
AGATCTTCCGCCACTTCGACCGCGACATGGACGGCCGCATCTCGGGCCGGGAGCTGGGCGAGTTCTTCGCGTCCATGGGC
GACGGCGGCGCAAAAGCCGCGCTGGAGCTGGACGCGGCCAGCTCCGGCGGCGGTGGCGACCTCATGCTGGGGTTCGAGGA
CTTCGTCAGGATCGTGGAGCGCAAGGGCGGGGATGAGGAGGAGCGCGAGGACCTGC-GCCGCGCGTTCGAGGCCTTCGAG
GCCGTCAAGGGCTCCGGCCGGATCACGCCGCGCGGCCTGCAGCGCGTGCTCAGCCAGCTCGGCGACGACCCGTCCGTCGC
CGAGTGCGAGGCCATGATACGCGCCTACGACGACGACGGCGACGGCGAGCTTGATTTCCACGATTTCCACCGCATGATGA
GCCATGACTAGCTGCCTGTGGCG-------CGGCTGGGCATCACTTTGTTCCTTCATCCGTGTGTTTCCAGTTTCCAGTG
CGTGAGTGTGTGTGGTTTGTGTGGCGCGCGCGCCAGTTTGAACGTG----------------------------------
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-------------------------------------------CTATGCTGTTTGGGTGTTTCTGCTTTTACAAGGGAGC
TGGATAACGTTGACATATTGGAGATCACGGCCTCATGCAAATTCAG-ATGATATGCAAATCTGTAATCCATGCAAATTTT
AATTGACCAAATAGCATCATGATTTTTTTATTTT--GAACTATCTCGCGAGGTGGGGGGTGTTCCACCTAGATCCACTAC
TCAAAGTATCACGCAGTGGCAAGTGCTACAAGGCCTTGTCAGTGCAAGAGGAGTTGTTTTTCTGATGACATCGACGAGGT
GGCGGCGGCGATGG------------------------------------------------------------------
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>chr3B_495
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--------------GGCGGTGCTATCCATGTTTTCTTTGGATATCCGATCGAATTAGTATGTGCTCCCCTCTCCTTACTT
TACCTCGT----GTATATATCTATGTTTCAGTATCTCCAAGGCG-AGCTATGCTAATTATACCAGTTTAATTGAAATTGA
CGGCGATCAGTA--ATCACACCAAAAATGACGCTCCTCTCTGGCTAGCAAGCACTAGTAGTAAGTAGTAACCTTATTCGA
TCGGTACGTGTAACGTGACTG--AGCAAGTGAGCATGGACATGGGCCATTAATCGGCTCGATCGATCCTTCCGGCAGAAA
GGGAGAAGAACCACAAAAGGTCCGGTGAAATTTCCCTCCGCTGCACGCCCCGCCGTAACTTACTGCCCAGCCCCAGCGCA
TTGGACTGCCTCGCCTTTCT-CCCCTTATATATACGCCCGCACCTCAAGCATCACGG-TCGCACCGCACGCGCGCGCGCA
GACGCACACTTCACTAGCTTAGCTTTCGGCTTTCGCGGAGAGAAGCGAATTCCCAGGCTTTTGGCAAGGTTCC--TCGGC
GGCCAATGGCGAGCATGGAGGTCGCAAAGCCTGGGTCGTCCAAGCGCCTGTCCCCGAAGGGGAGTTTCAGGCTGAGCCTG
CTCGCTTGCGGCCAGTGCAAGGCCACCACCGTGTCGCCCCCGGGCTCGCCCACCGGCGCCGGCGC---------GAGGTC
GCTGTCGTCCTCGGCGTCGTCCTCCGCGGGGACGTCCCGCTCCCGCGGCCGCGAGCGCGACCGCCAGGCGGAGCTGCGGG
AGATCTTCCGCCACTTCGACCGCGACATGGACGGCCGGATCTCGGGCCGGGAGCTCGGCGAGTTCTTCGCGTCCATGGGG
GACGGCGGCGCAAAAGCCGCGATGGAGCTGGACGCGGCCAGCTCCGGCGGCGGTGGCGACCTCATGCTGGGGTTCGAGGA
CTTCGTGAGGATCGTGGAGCGGAAGGGCGGGGAGGAGGAGGAGCGCGAGGACCTGC-GC-GCGCGTTCGAGGCCTTCGAG
GCGGTCAAGGGCTCCGGCCGGATCACGCCGCGCGGCCTGCAGCGCGTGCTCAGCCAGCTCGGCGACGACCCGTCCGTCGC
CGAGTGCGAGGCCATGATACGCGCCTACGACGACGACGGCGACGGCGAGCTTGATTTCCACGATTTCCACCGCATGATGA
GCCATGACTAGTTGTCTGTTTCGCCGCGGCCGGCTGGGCATCACTTTGTTACTTCATCCGTGTG----------------
--------------GTTTGTGTGGCGCGCGCCCCAGTTGAACGTGCTATGCTGTTGGGCAACGATCTGCGCGGGTGCACC
GGCCCAATTGTTGGGCCGGTCGCACAGCAGCCGTTGGATCCGACCGCCTGGGCCGTTGGATCCCATCGAAGAAAACGATT
CTCCCTTACCTTCTTCTTCCTTGCGCGAGGGAGAAAAAGAAATCTGCAGGTCAGCCTCCTCGTGCGCGCCCCTTGGCCGC
CTCGTGCGCGCCCTTGGCCGCCCCGTCGCAGCTCGCCGGGCCTGCTCGACCGCCCCATCGACCTCGCCGGGCCTGCTCGA
CGTCGCAGCTCACGGTGGCCGGTTGATGTCGCAGATCGCCGAGGCCGCCACACCCGCAGCTCGCCGGATGCAGCTTCGCC
TTGCATCTCGACGTGTGTCACACCCCCTGATTGCAGCACCACCGGATGAGGGTTCCAGCGTCGCCACCGGCCTGCTGTCG
TAGCTCGCCATGCGCCCATCACAGCACCGCCACACAGCGCCATCGTCGCCGGTCTCCATTGTTATCTAGCTGTTTTCAGT
TTGAAGCTTTTTTAGAAGCGGGTTGTAGCTATTCTCGACGCCGGTTGCAGCTTTTTTTGGCTGCGTGGTGGCCGACCTCC
AGCTACCCCGTATCCAGTTGAAGCTTTTTTCAAAATCGGATGTAGCTTTTTTGATTGCCGGACGTAGCATTTTTTCAAAA
TCAGATGTAGCTTTTTTGATTGACGGACGTAGCATTTTTCAGTATGGTTGCAGCTATGACGCACGTCCGTCAAAGCCTAT
TCTTTCTCTGGTTCCAGCAAAAAATGCCACCGGTCGTAGCATTTTGGGTTGACGGTTGTAGCTCCGATGTGCACCGGTTG
TAACACCTGCTTCTCTCTTGTCCCTGCAAGAAAGAATGACGCATGTAGCAATTTCCGTCGCTGCTTGTAGCTTCGTCGAG
TGCCGTTAACAGCTTTTCCGTAGATGGTTGAAGCATCCCCGTGCAGCACGTCGGCGCCTGCACGCTCCGGTCCCAGTTCG
TGCTTGTAGCATCATCATCCCCGATGTTGTGGGTTGCAGCTCCTTATCGAAAAAGATGTTGTCGCCGGATGCAGCAAAAA
AATTGCTGGTTCCAGCTCTCTCTCCGGCCGGTTCCAACAAAACAGTGCTGGTTCCAGCTCCGGTGACGGTCGGTTGTAGC
AAAAAATGTGGCCGGTTGAACCTTTTCTAAAGCCGGTTGAAGCTATTAACGATGCCGGTTGTATCATCTGCACAGGCTTG
TTCCAGCCACGGGGTGTTCGTTGTCTCCAGCGCCGGCAAGTGTTTATTGCAGCACGCTCGCGTCTGGGGCTCTTTGTCTC
CGGCACCAATGGGGACCAGATGCAGGACCCGCCGACCCCTGTGCATGTCGTCTCCAGCACCACAAGTCAGCGGCCGTGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCGTGATGGGGATTGCAGCAGCAGGAATGGGGGAGATGCATGTGTCGCTGGGAAAAAATGA
ATGGACAGGGAGAAGGATAAGGTCGGGCTGGCTCATCTCGTGTGGGACCCCCGCGAAGTGGGAGCGCGTGTGAGCGGGCG
ACCGGCCGAAGGTTCGGCCGGCGCACCGTCTTCAAACGTTTCCCTATGCTGTTTGGGTGTTTCTGCTTTTACAAGGGAGC
TGGATAACGTTGACATATTGGAGATCACTGCCTCATGAAAATTTCAAATGATATGCAAATCTGTAATCCATGCAACTTTT
AGTTGACTAAATAACATCATGATTTATTTATCTT--GAACAATCTC----------------------------------
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>chr3A_745
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---------------------------------------------------ATCGGCTCGATCAATCCTTCCGACAGAAA
GCAAGAAGAACCACAAAA-GTCCGGTGAAATTTCCCTCCGCTGCACGCCCCGCCGTAACATACT-------------GCA
TTGGACCGCTTCGCCTTTCT-CCCCTTATATATACGCCCGCACCTCAAGCATCACGG-TCTCACCGCACGCGCGCGCGCA
CACGCACGCTTCACTAGCTTAGCTTTCGGCTTTTGGCTACGTAGTT-----------------------------TCGGC
GGCAAATGGCGACCATCGAGGTCTCCAAGCCACCGTCATCCAAGCGCATGTCCCCGAAGGGGAGCTTCAAGCTGAGCCTG
CTCGCCTGCGGCCACTGCAAGGCCACCACAGTCTCGCCCCCGGACTCCCCCACCGGCGCCGGCGC---------GCGGTC
GCTCTCGTCCTCGGCGTCGTCCTCCGCGGGGACCTCCC------------------GCGACCGCCAGGCGGAGCTGCGGG
AGATCTTCCGCCACTTCGACCGCGACATGGACGGCCGGATCTCGGGCCGGGAGCTCCGCGAGTTCTTCGCGTCCATGGGC
GACGGCGGCGCGGAGGCCGCGCTGGAGCTCGACGCGGCC---------------GGCGACCTCATGCTGGGGTTCGAGGA
CTTCGTCAGGATCGTGGAGCGCAAGGGCGGGGAGGAGGAGGAGCGCGAGGACCTGCGGC-GCGCGTTCCAGGCCTTCGAG
GCCGTCAAGGGCTCCGGCCGGATCACGCCGCGCGGCCTGCAGCGCGTGCTCAGCCAGCTCGGCGACGACCCGTCCGTCGC
CGAGTGCGAGGCCATGATACGGGCCTACGACGACGACGGCGACGGCGAGCTCGATTTCCACGATTTCCACCGCATGATGA
GCCATGACTAGCTGCCTGTGGCG-------CGGCTGGGCACCACTTGTT-------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
----------------------------S-----------S---------------------------------------
---------------------S--------------------------------S-------------------------
-----S---S----------------------------------------------------------------------
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---------------------------------------S--------------------------------S-------
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--------------------------S-------------------S---------------------------------
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---------------------------------------------------------------------------S----
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-----------------------------S-S--SS----------------S---------------------------
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-----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_81
-------------------------------------------------------------AAATCCCTTCCCTCTTGCC
C-------------------------------------------------------------------------------
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>reverse_4033
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--------------------------------ATGAGGGAGGCGAGGAAGAT----------------------------
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