Multiple sequence alignment - TraesCS3D01G298100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G298100 chr3D 100.000 1515 0 0 1 1515 412092741 412091227 0.000000e+00 2798.0
1 TraesCS3D01G298100 chr3D 100.000 339 0 0 1836 2174 412090906 412090568 5.090000e-176 627.0
2 TraesCS3D01G298100 chr3A 89.784 832 31 12 703 1515 538011375 538012171 0.000000e+00 1016.0
3 TraesCS3D01G298100 chr3A 93.056 144 7 2 2031 2174 538012362 538012502 7.870000e-50 207.0
4 TraesCS3D01G298100 chr3B 86.480 858 32 21 703 1515 539068209 539067391 0.000000e+00 865.0
5 TraesCS3D01G298100 chr3B 89.720 107 11 0 32 138 61983425 61983319 1.050000e-28 137.0
6 TraesCS3D01G298100 chr3B 87.755 98 7 3 2077 2174 539067201 539067109 2.280000e-20 110.0
7 TraesCS3D01G298100 chr7A 83.886 211 28 3 222 427 136467458 136467249 1.700000e-46 196.0
8 TraesCS3D01G298100 chr6B 89.130 138 14 1 1 137 144967680 144967817 1.030000e-38 171.0
9 TraesCS3D01G298100 chr4D 87.879 132 15 1 6 136 480183509 480183640 1.040000e-33 154.0
10 TraesCS3D01G298100 chr1D 84.892 139 19 2 1 138 493732355 493732492 2.910000e-29 139.0
11 TraesCS3D01G298100 chr1A 88.288 111 13 0 27 137 266187285 266187395 1.350000e-27 134.0
12 TraesCS3D01G298100 chr1B 83.942 137 21 1 170 305 598190049 598190185 1.750000e-26 130.0
13 TraesCS3D01G298100 chr4B 83.761 117 17 2 18 132 315770023 315770139 2.280000e-20 110.0
14 TraesCS3D01G298100 chr7B 97.826 46 1 0 197 242 517122195 517122150 1.790000e-11 80.5
15 TraesCS3D01G298100 chrUn 100.000 28 0 0 404 431 111042045 111042072 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G298100 chr3D 412090568 412092741 2173 True 1712.5 2798 100.0000 1 2174 2 chr3D.!!$R1 2173
1 TraesCS3D01G298100 chr3A 538011375 538012502 1127 False 611.5 1016 91.4200 703 2174 2 chr3A.!!$F1 1471
2 TraesCS3D01G298100 chr3B 539067109 539068209 1100 True 487.5 865 87.1175 703 2174 2 chr3B.!!$R2 1471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 614 0.0293 GACTGCGTGTTGTGTTGCAT 59.971 50.0 0.0 0.0 36.64 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 2023 0.835941 AGCTCCTGCAATCTCCGAAT 59.164 50.0 0.0 0.0 42.74 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.972227 ACATCTGTCACTTGCCGC 58.028 55.556 0.00 0.00 0.00 6.53
18 19 1.071299 ACATCTGTCACTTGCCGCA 59.929 52.632 0.00 0.00 0.00 5.69
19 20 0.952497 ACATCTGTCACTTGCCGCAG 60.952 55.000 0.00 0.00 0.00 5.18
20 21 2.037136 ATCTGTCACTTGCCGCAGC 61.037 57.895 0.00 0.00 40.48 5.25
21 22 2.460662 ATCTGTCACTTGCCGCAGCT 62.461 55.000 0.00 0.00 40.80 4.24
22 23 2.666190 TGTCACTTGCCGCAGCTC 60.666 61.111 0.00 0.00 40.80 4.09
23 24 2.666190 GTCACTTGCCGCAGCTCA 60.666 61.111 0.00 0.00 40.80 4.26
24 25 2.037136 GTCACTTGCCGCAGCTCAT 61.037 57.895 0.00 0.00 40.80 2.90
25 26 1.302752 TCACTTGCCGCAGCTCATT 60.303 52.632 0.00 0.00 40.80 2.57
26 27 1.154093 CACTTGCCGCAGCTCATTG 60.154 57.895 0.00 0.00 40.80 2.82
27 28 2.338015 ACTTGCCGCAGCTCATTGG 61.338 57.895 0.00 0.00 40.80 3.16
28 29 3.060020 CTTGCCGCAGCTCATTGGG 62.060 63.158 0.00 0.00 40.80 4.12
37 38 2.745884 CTCATTGGGCGCGGACAA 60.746 61.111 8.83 12.14 0.00 3.18
38 39 2.745884 TCATTGGGCGCGGACAAG 60.746 61.111 8.83 8.32 0.00 3.16
39 40 4.481112 CATTGGGCGCGGACAAGC 62.481 66.667 8.83 0.00 0.00 4.01
76 77 4.643387 GGGCTGCCCACGACTTGT 62.643 66.667 32.46 0.00 44.65 3.16
77 78 2.594592 GGCTGCCCACGACTTGTT 60.595 61.111 7.66 0.00 0.00 2.83
78 79 2.617274 GGCTGCCCACGACTTGTTC 61.617 63.158 7.66 0.00 0.00 3.18
90 91 2.400399 GACTTGTTCGACGGAATGACA 58.600 47.619 0.00 0.00 34.05 3.58
91 92 2.404215 ACTTGTTCGACGGAATGACAG 58.596 47.619 0.00 0.00 34.05 3.51
92 93 2.035449 ACTTGTTCGACGGAATGACAGA 59.965 45.455 0.00 0.00 34.05 3.41
93 94 2.804697 TGTTCGACGGAATGACAGAA 57.195 45.000 0.00 0.00 34.05 3.02
94 95 2.400399 TGTTCGACGGAATGACAGAAC 58.600 47.619 0.00 0.00 38.60 3.01
95 96 2.223852 TGTTCGACGGAATGACAGAACA 60.224 45.455 4.93 4.93 43.50 3.18
96 97 2.798283 GTTCGACGGAATGACAGAACAA 59.202 45.455 0.00 0.00 38.18 2.83
97 98 2.672714 TCGACGGAATGACAGAACAAG 58.327 47.619 0.00 0.00 0.00 3.16
98 99 2.295070 TCGACGGAATGACAGAACAAGA 59.705 45.455 0.00 0.00 0.00 3.02
99 100 3.057019 CGACGGAATGACAGAACAAGAA 58.943 45.455 0.00 0.00 0.00 2.52
100 101 3.679980 CGACGGAATGACAGAACAAGAAT 59.320 43.478 0.00 0.00 0.00 2.40
101 102 4.201628 CGACGGAATGACAGAACAAGAATC 60.202 45.833 0.00 0.00 0.00 2.52
102 103 3.679980 ACGGAATGACAGAACAAGAATCG 59.320 43.478 0.00 0.00 0.00 3.34
103 104 3.062639 CGGAATGACAGAACAAGAATCGG 59.937 47.826 0.00 0.00 0.00 4.18
104 105 4.003648 GGAATGACAGAACAAGAATCGGT 58.996 43.478 0.00 0.00 0.00 4.69
105 106 5.175859 GGAATGACAGAACAAGAATCGGTA 58.824 41.667 0.00 0.00 0.00 4.02
106 107 5.817816 GGAATGACAGAACAAGAATCGGTAT 59.182 40.000 0.00 0.00 0.00 2.73
107 108 6.238211 GGAATGACAGAACAAGAATCGGTATG 60.238 42.308 0.00 0.00 0.00 2.39
108 109 5.147330 TGACAGAACAAGAATCGGTATGT 57.853 39.130 0.00 0.00 0.00 2.29
109 110 5.547465 TGACAGAACAAGAATCGGTATGTT 58.453 37.500 0.00 0.00 38.62 2.71
117 118 4.946784 AGAATCGGTATGTTCTTGTTGC 57.053 40.909 0.00 0.00 30.84 4.17
118 119 4.579869 AGAATCGGTATGTTCTTGTTGCT 58.420 39.130 0.00 0.00 30.84 3.91
119 120 4.631813 AGAATCGGTATGTTCTTGTTGCTC 59.368 41.667 0.00 0.00 30.84 4.26
120 121 2.695359 TCGGTATGTTCTTGTTGCTCC 58.305 47.619 0.00 0.00 0.00 4.70
121 122 2.301870 TCGGTATGTTCTTGTTGCTCCT 59.698 45.455 0.00 0.00 0.00 3.69
122 123 2.416547 CGGTATGTTCTTGTTGCTCCTG 59.583 50.000 0.00 0.00 0.00 3.86
123 124 3.412386 GGTATGTTCTTGTTGCTCCTGT 58.588 45.455 0.00 0.00 0.00 4.00
124 125 3.437049 GGTATGTTCTTGTTGCTCCTGTC 59.563 47.826 0.00 0.00 0.00 3.51
125 126 1.967319 TGTTCTTGTTGCTCCTGTCC 58.033 50.000 0.00 0.00 0.00 4.02
126 127 0.868406 GTTCTTGTTGCTCCTGTCCG 59.132 55.000 0.00 0.00 0.00 4.79
127 128 0.756294 TTCTTGTTGCTCCTGTCCGA 59.244 50.000 0.00 0.00 0.00 4.55
128 129 0.033504 TCTTGTTGCTCCTGTCCGAC 59.966 55.000 0.00 0.00 0.00 4.79
129 130 0.951040 CTTGTTGCTCCTGTCCGACC 60.951 60.000 0.00 0.00 0.00 4.79
130 131 1.691195 TTGTTGCTCCTGTCCGACCA 61.691 55.000 0.00 0.00 0.00 4.02
131 132 1.070786 GTTGCTCCTGTCCGACCAA 59.929 57.895 0.00 0.00 0.00 3.67
132 133 1.070786 TTGCTCCTGTCCGACCAAC 59.929 57.895 0.00 0.00 0.00 3.77
133 134 1.407656 TTGCTCCTGTCCGACCAACT 61.408 55.000 0.00 0.00 0.00 3.16
134 135 1.371558 GCTCCTGTCCGACCAACTT 59.628 57.895 0.00 0.00 0.00 2.66
135 136 0.250338 GCTCCTGTCCGACCAACTTT 60.250 55.000 0.00 0.00 0.00 2.66
136 137 1.512926 CTCCTGTCCGACCAACTTTG 58.487 55.000 0.00 0.00 0.00 2.77
137 138 0.534203 TCCTGTCCGACCAACTTTGC 60.534 55.000 0.00 0.00 0.00 3.68
138 139 1.569493 CTGTCCGACCAACTTTGCG 59.431 57.895 0.00 0.00 0.00 4.85
139 140 1.153329 TGTCCGACCAACTTTGCGT 60.153 52.632 0.00 0.00 0.00 5.24
140 141 1.155424 TGTCCGACCAACTTTGCGTC 61.155 55.000 0.00 2.29 0.00 5.19
141 142 1.595929 TCCGACCAACTTTGCGTCC 60.596 57.895 0.00 0.00 0.00 4.79
142 143 2.549282 CGACCAACTTTGCGTCCG 59.451 61.111 5.52 0.00 0.00 4.79
143 144 2.943653 GACCAACTTTGCGTCCGG 59.056 61.111 0.00 0.00 0.00 5.14
144 145 3.249973 GACCAACTTTGCGTCCGGC 62.250 63.158 0.00 0.00 43.96 6.13
154 155 3.822192 CGTCCGGCGAGTGATCCA 61.822 66.667 9.30 0.00 44.77 3.41
155 156 2.105128 GTCCGGCGAGTGATCCAG 59.895 66.667 9.30 0.00 0.00 3.86
156 157 3.838271 TCCGGCGAGTGATCCAGC 61.838 66.667 9.30 0.00 0.00 4.85
157 158 4.899239 CCGGCGAGTGATCCAGCC 62.899 72.222 9.30 7.51 45.67 4.85
160 161 2.894387 GCGAGTGATCCAGCCAGC 60.894 66.667 0.00 0.00 0.00 4.85
161 162 2.202987 CGAGTGATCCAGCCAGCC 60.203 66.667 0.00 0.00 0.00 4.85
162 163 2.993008 GAGTGATCCAGCCAGCCA 59.007 61.111 0.00 0.00 0.00 4.75
163 164 1.153208 GAGTGATCCAGCCAGCCAG 60.153 63.158 0.00 0.00 0.00 4.85
164 165 2.827642 GTGATCCAGCCAGCCAGC 60.828 66.667 0.00 0.00 0.00 4.85
165 166 4.478371 TGATCCAGCCAGCCAGCG 62.478 66.667 0.00 0.00 38.01 5.18
166 167 4.166888 GATCCAGCCAGCCAGCGA 62.167 66.667 0.00 0.00 38.01 4.93
167 168 4.172512 ATCCAGCCAGCCAGCGAG 62.173 66.667 0.00 0.00 38.01 5.03
177 178 2.507452 CCAGCGAGGCATCCATCA 59.493 61.111 0.00 0.00 0.00 3.07
178 179 1.890979 CCAGCGAGGCATCCATCAC 60.891 63.158 0.00 0.00 0.00 3.06
179 180 2.107750 AGCGAGGCATCCATCACG 59.892 61.111 0.00 0.00 0.00 4.35
180 181 3.643978 GCGAGGCATCCATCACGC 61.644 66.667 0.00 0.00 39.33 5.34
181 182 2.107750 CGAGGCATCCATCACGCT 59.892 61.111 0.00 0.00 0.00 5.07
182 183 1.953138 CGAGGCATCCATCACGCTC 60.953 63.158 0.00 0.00 0.00 5.03
183 184 1.953138 GAGGCATCCATCACGCTCG 60.953 63.158 0.00 0.00 0.00 5.03
184 185 2.106938 GGCATCCATCACGCTCGA 59.893 61.111 0.00 0.00 0.00 4.04
185 186 1.521457 GGCATCCATCACGCTCGAA 60.521 57.895 0.00 0.00 0.00 3.71
186 187 1.638467 GCATCCATCACGCTCGAAC 59.362 57.895 0.00 0.00 0.00 3.95
187 188 1.083806 GCATCCATCACGCTCGAACA 61.084 55.000 0.00 0.00 0.00 3.18
188 189 1.575244 CATCCATCACGCTCGAACAT 58.425 50.000 0.00 0.00 0.00 2.71
189 190 1.935873 CATCCATCACGCTCGAACATT 59.064 47.619 0.00 0.00 0.00 2.71
190 191 1.358877 TCCATCACGCTCGAACATTG 58.641 50.000 0.00 0.00 0.00 2.82
191 192 1.067213 TCCATCACGCTCGAACATTGA 60.067 47.619 0.00 0.00 0.00 2.57
192 193 1.935873 CCATCACGCTCGAACATTGAT 59.064 47.619 0.00 0.00 0.00 2.57
193 194 2.352651 CCATCACGCTCGAACATTGATT 59.647 45.455 0.00 0.00 0.00 2.57
194 195 3.181507 CCATCACGCTCGAACATTGATTT 60.182 43.478 0.00 0.00 0.00 2.17
195 196 4.406069 CATCACGCTCGAACATTGATTTT 58.594 39.130 0.00 0.00 0.00 1.82
196 197 4.481930 TCACGCTCGAACATTGATTTTT 57.518 36.364 0.00 0.00 0.00 1.94
214 215 2.739885 TTTTTGGCATGTCCGGATTG 57.260 45.000 7.81 10.40 37.80 2.67
215 216 1.626686 TTTTGGCATGTCCGGATTGT 58.373 45.000 7.81 0.00 37.80 2.71
216 217 1.626686 TTTGGCATGTCCGGATTGTT 58.373 45.000 7.81 0.00 37.80 2.83
217 218 0.887247 TTGGCATGTCCGGATTGTTG 59.113 50.000 7.81 4.41 37.80 3.33
218 219 0.037447 TGGCATGTCCGGATTGTTGA 59.963 50.000 7.81 0.00 37.80 3.18
219 220 1.173043 GGCATGTCCGGATTGTTGAA 58.827 50.000 7.81 0.00 0.00 2.69
220 221 1.543802 GGCATGTCCGGATTGTTGAAA 59.456 47.619 7.81 0.00 0.00 2.69
221 222 2.166254 GGCATGTCCGGATTGTTGAAAT 59.834 45.455 7.81 0.00 0.00 2.17
222 223 3.380004 GGCATGTCCGGATTGTTGAAATA 59.620 43.478 7.81 0.00 0.00 1.40
223 224 4.037923 GGCATGTCCGGATTGTTGAAATAT 59.962 41.667 7.81 0.00 0.00 1.28
224 225 4.977963 GCATGTCCGGATTGTTGAAATATG 59.022 41.667 7.81 0.00 0.00 1.78
225 226 5.221028 GCATGTCCGGATTGTTGAAATATGA 60.221 40.000 7.81 0.00 0.00 2.15
226 227 6.515531 GCATGTCCGGATTGTTGAAATATGAT 60.516 38.462 7.81 0.00 0.00 2.45
227 228 7.428020 CATGTCCGGATTGTTGAAATATGATT 58.572 34.615 7.81 0.00 0.00 2.57
228 229 7.403312 TGTCCGGATTGTTGAAATATGATTT 57.597 32.000 7.81 0.00 0.00 2.17
229 230 7.257003 TGTCCGGATTGTTGAAATATGATTTG 58.743 34.615 7.81 0.00 0.00 2.32
230 231 7.093988 TGTCCGGATTGTTGAAATATGATTTGT 60.094 33.333 7.81 0.00 0.00 2.83
231 232 7.759433 GTCCGGATTGTTGAAATATGATTTGTT 59.241 33.333 7.81 0.00 0.00 2.83
232 233 8.310382 TCCGGATTGTTGAAATATGATTTGTTT 58.690 29.630 0.00 0.00 0.00 2.83
233 234 8.934825 CCGGATTGTTGAAATATGATTTGTTTT 58.065 29.630 0.00 0.00 0.00 2.43
234 235 9.743937 CGGATTGTTGAAATATGATTTGTTTTG 57.256 29.630 0.00 0.00 0.00 2.44
235 236 9.545611 GGATTGTTGAAATATGATTTGTTTTGC 57.454 29.630 0.00 0.00 0.00 3.68
239 240 9.932699 TGTTGAAATATGATTTGTTTTGCTTTG 57.067 25.926 0.00 0.00 0.00 2.77
240 241 9.934190 GTTGAAATATGATTTGTTTTGCTTTGT 57.066 25.926 0.00 0.00 0.00 2.83
247 248 8.672214 ATGATTTGTTTTGCTTTGTTTGAAAC 57.328 26.923 0.14 0.14 0.00 2.78
248 249 7.869800 TGATTTGTTTTGCTTTGTTTGAAACT 58.130 26.923 9.69 0.00 32.84 2.66
249 250 8.993121 TGATTTGTTTTGCTTTGTTTGAAACTA 58.007 25.926 9.69 0.00 32.84 2.24
250 251 9.986833 GATTTGTTTTGCTTTGTTTGAAACTAT 57.013 25.926 9.69 0.00 32.84 2.12
252 253 9.604626 TTTGTTTTGCTTTGTTTGAAACTATTG 57.395 25.926 9.69 0.05 32.84 1.90
253 254 8.539770 TGTTTTGCTTTGTTTGAAACTATTGA 57.460 26.923 9.69 0.00 32.84 2.57
254 255 8.993121 TGTTTTGCTTTGTTTGAAACTATTGAA 58.007 25.926 9.69 0.00 32.84 2.69
255 256 9.986833 GTTTTGCTTTGTTTGAAACTATTGAAT 57.013 25.926 9.69 0.00 0.00 2.57
257 258 9.985318 TTTGCTTTGTTTGAAACTATTGAATTG 57.015 25.926 9.69 0.00 0.00 2.32
258 259 8.140677 TGCTTTGTTTGAAACTATTGAATTGG 57.859 30.769 9.69 0.00 0.00 3.16
259 260 7.226325 TGCTTTGTTTGAAACTATTGAATTGGG 59.774 33.333 9.69 0.00 0.00 4.12
260 261 7.440856 GCTTTGTTTGAAACTATTGAATTGGGA 59.559 33.333 9.69 0.00 0.00 4.37
261 262 8.655651 TTTGTTTGAAACTATTGAATTGGGAC 57.344 30.769 9.69 0.00 0.00 4.46
262 263 6.754193 TGTTTGAAACTATTGAATTGGGACC 58.246 36.000 9.69 0.00 0.00 4.46
263 264 6.325028 TGTTTGAAACTATTGAATTGGGACCA 59.675 34.615 9.69 0.00 0.00 4.02
264 265 7.016072 TGTTTGAAACTATTGAATTGGGACCAT 59.984 33.333 9.69 0.00 0.00 3.55
265 266 7.552050 TTGAAACTATTGAATTGGGACCATT 57.448 32.000 0.00 0.00 0.00 3.16
266 267 7.552050 TGAAACTATTGAATTGGGACCATTT 57.448 32.000 0.00 0.00 0.00 2.32
267 268 7.385267 TGAAACTATTGAATTGGGACCATTTG 58.615 34.615 3.42 0.00 0.00 2.32
268 269 6.933514 AACTATTGAATTGGGACCATTTGT 57.066 33.333 3.42 0.00 0.00 2.83
269 270 8.429237 AAACTATTGAATTGGGACCATTTGTA 57.571 30.769 3.42 0.00 0.00 2.41
270 271 8.608185 AACTATTGAATTGGGACCATTTGTAT 57.392 30.769 3.42 0.79 0.00 2.29
271 272 8.237811 ACTATTGAATTGGGACCATTTGTATC 57.762 34.615 3.42 0.00 0.00 2.24
272 273 7.838696 ACTATTGAATTGGGACCATTTGTATCA 59.161 33.333 3.42 0.00 0.00 2.15
273 274 5.913137 TGAATTGGGACCATTTGTATCAC 57.087 39.130 3.42 0.00 0.00 3.06
274 275 5.328565 TGAATTGGGACCATTTGTATCACA 58.671 37.500 3.42 0.00 0.00 3.58
275 276 5.184864 TGAATTGGGACCATTTGTATCACAC 59.815 40.000 3.42 0.00 0.00 3.82
276 277 2.705730 TGGGACCATTTGTATCACACG 58.294 47.619 0.00 0.00 0.00 4.49
277 278 2.303311 TGGGACCATTTGTATCACACGA 59.697 45.455 0.00 0.00 0.00 4.35
278 279 3.054728 TGGGACCATTTGTATCACACGAT 60.055 43.478 0.00 0.00 35.50 3.73
279 280 3.560068 GGGACCATTTGTATCACACGATC 59.440 47.826 0.00 0.00 32.73 3.69
280 281 3.245284 GGACCATTTGTATCACACGATCG 59.755 47.826 14.88 14.88 32.73 3.69
281 282 4.109766 GACCATTTGTATCACACGATCGA 58.890 43.478 24.34 0.00 32.73 3.59
282 283 3.863424 ACCATTTGTATCACACGATCGAC 59.137 43.478 24.34 8.85 32.73 4.20
294 295 2.543476 CGATCGACGTGCATGTATTG 57.457 50.000 12.53 3.07 37.22 1.90
308 309 3.540314 TGTATTGCATGAATTTGGGGC 57.460 42.857 0.00 0.00 0.00 5.80
309 310 3.106054 TGTATTGCATGAATTTGGGGCT 58.894 40.909 0.00 0.00 0.00 5.19
310 311 2.994186 ATTGCATGAATTTGGGGCTC 57.006 45.000 0.00 0.00 0.00 4.70
311 312 1.941377 TTGCATGAATTTGGGGCTCT 58.059 45.000 0.00 0.00 0.00 4.09
312 313 1.187974 TGCATGAATTTGGGGCTCTG 58.812 50.000 0.00 0.00 0.00 3.35
313 314 0.179092 GCATGAATTTGGGGCTCTGC 60.179 55.000 0.00 0.00 0.00 4.26
314 315 1.187974 CATGAATTTGGGGCTCTGCA 58.812 50.000 0.00 0.00 0.00 4.41
315 316 1.760613 CATGAATTTGGGGCTCTGCAT 59.239 47.619 0.00 0.00 0.00 3.96
316 317 1.941377 TGAATTTGGGGCTCTGCATT 58.059 45.000 0.00 0.00 0.00 3.56
317 318 2.259012 TGAATTTGGGGCTCTGCATTT 58.741 42.857 0.00 0.00 0.00 2.32
318 319 2.027929 TGAATTTGGGGCTCTGCATTTG 60.028 45.455 0.00 0.00 0.00 2.32
319 320 1.941377 ATTTGGGGCTCTGCATTTGA 58.059 45.000 0.00 0.00 0.00 2.69
320 321 1.259609 TTTGGGGCTCTGCATTTGAG 58.740 50.000 0.00 0.00 34.87 3.02
321 322 0.612732 TTGGGGCTCTGCATTTGAGG 60.613 55.000 3.87 0.00 32.57 3.86
322 323 1.000396 GGGGCTCTGCATTTGAGGT 60.000 57.895 3.87 0.00 32.57 3.85
323 324 1.318158 GGGGCTCTGCATTTGAGGTG 61.318 60.000 3.87 0.00 32.57 4.00
324 325 0.610232 GGGCTCTGCATTTGAGGTGT 60.610 55.000 3.87 0.00 32.57 4.16
325 326 0.524862 GGCTCTGCATTTGAGGTGTG 59.475 55.000 3.87 0.00 32.57 3.82
326 327 1.242076 GCTCTGCATTTGAGGTGTGT 58.758 50.000 3.87 0.00 32.57 3.72
327 328 1.068748 GCTCTGCATTTGAGGTGTGTG 60.069 52.381 3.87 0.00 32.57 3.82
328 329 2.497138 CTCTGCATTTGAGGTGTGTGA 58.503 47.619 0.00 0.00 0.00 3.58
329 330 2.880268 CTCTGCATTTGAGGTGTGTGAA 59.120 45.455 0.00 0.00 0.00 3.18
330 331 3.489355 TCTGCATTTGAGGTGTGTGAAT 58.511 40.909 0.00 0.00 0.00 2.57
331 332 3.253921 TCTGCATTTGAGGTGTGTGAATG 59.746 43.478 0.00 0.00 0.00 2.67
332 333 2.957680 TGCATTTGAGGTGTGTGAATGT 59.042 40.909 0.00 0.00 31.96 2.71
333 334 3.243468 TGCATTTGAGGTGTGTGAATGTG 60.243 43.478 0.00 0.00 31.96 3.21
334 335 3.311106 CATTTGAGGTGTGTGAATGTGC 58.689 45.455 0.00 0.00 0.00 4.57
335 336 0.943673 TTGAGGTGTGTGAATGTGCG 59.056 50.000 0.00 0.00 0.00 5.34
336 337 0.179059 TGAGGTGTGTGAATGTGCGT 60.179 50.000 0.00 0.00 0.00 5.24
337 338 0.512952 GAGGTGTGTGAATGTGCGTC 59.487 55.000 0.00 0.00 0.00 5.19
338 339 0.884704 AGGTGTGTGAATGTGCGTCC 60.885 55.000 0.00 0.00 0.00 4.79
339 340 1.163420 GGTGTGTGAATGTGCGTCCA 61.163 55.000 0.00 0.00 0.00 4.02
340 341 0.874390 GTGTGTGAATGTGCGTCCAT 59.126 50.000 0.00 0.00 0.00 3.41
341 342 2.073056 GTGTGTGAATGTGCGTCCATA 58.927 47.619 0.00 0.00 0.00 2.74
342 343 2.677836 GTGTGTGAATGTGCGTCCATAT 59.322 45.455 0.00 0.00 0.00 1.78
343 344 2.677337 TGTGTGAATGTGCGTCCATATG 59.323 45.455 0.00 0.00 0.00 1.78
344 345 2.935849 GTGTGAATGTGCGTCCATATGA 59.064 45.455 3.65 0.00 0.00 2.15
345 346 3.001634 GTGTGAATGTGCGTCCATATGAG 59.998 47.826 3.65 0.00 0.00 2.90
346 347 2.545526 GTGAATGTGCGTCCATATGAGG 59.454 50.000 3.65 0.00 0.00 3.86
347 348 2.146342 GAATGTGCGTCCATATGAGGG 58.854 52.381 3.65 0.00 0.00 4.30
348 349 0.397941 ATGTGCGTCCATATGAGGGG 59.602 55.000 3.65 0.00 0.00 4.79
349 350 1.598130 GTGCGTCCATATGAGGGGC 60.598 63.158 3.65 2.86 0.00 5.80
350 351 2.032681 GCGTCCATATGAGGGGCC 59.967 66.667 3.65 0.00 0.00 5.80
351 352 2.343758 CGTCCATATGAGGGGCCG 59.656 66.667 3.65 0.00 0.00 6.13
352 353 2.032681 GTCCATATGAGGGGCCGC 59.967 66.667 12.88 12.88 0.00 6.53
353 354 3.249189 TCCATATGAGGGGCCGCC 61.249 66.667 17.56 9.34 0.00 6.13
354 355 3.569210 CCATATGAGGGGCCGCCA 61.569 66.667 17.56 14.46 0.00 5.69
355 356 2.033141 CATATGAGGGGCCGCCAG 59.967 66.667 17.56 0.00 0.00 4.85
356 357 3.252284 ATATGAGGGGCCGCCAGG 61.252 66.667 17.56 0.00 41.62 4.45
390 391 3.228759 GCCCGTGGCGTATAGGGA 61.229 66.667 11.39 0.00 46.64 4.20
391 392 2.580601 GCCCGTGGCGTATAGGGAT 61.581 63.158 11.39 0.00 46.64 3.85
392 393 1.590147 CCCGTGGCGTATAGGGATC 59.410 63.158 2.65 0.00 46.64 3.36
393 394 1.590147 CCGTGGCGTATAGGGATCC 59.410 63.158 1.92 1.92 0.00 3.36
394 395 1.211969 CGTGGCGTATAGGGATCCG 59.788 63.158 5.45 0.00 0.00 4.18
395 396 1.590147 GTGGCGTATAGGGATCCGG 59.410 63.158 5.45 0.00 0.00 5.14
396 397 0.896940 GTGGCGTATAGGGATCCGGA 60.897 60.000 6.61 6.61 0.00 5.14
397 398 0.040646 TGGCGTATAGGGATCCGGAT 59.959 55.000 19.21 19.21 0.00 4.18
398 399 1.192428 GGCGTATAGGGATCCGGATT 58.808 55.000 20.22 5.24 0.00 3.01
399 400 1.553704 GGCGTATAGGGATCCGGATTT 59.446 52.381 20.22 10.17 0.00 2.17
400 401 2.618053 GCGTATAGGGATCCGGATTTG 58.382 52.381 20.22 3.85 0.00 2.32
401 402 2.618053 CGTATAGGGATCCGGATTTGC 58.382 52.381 20.22 5.66 0.00 3.68
402 403 2.233922 CGTATAGGGATCCGGATTTGCT 59.766 50.000 20.22 5.61 0.00 3.91
403 404 3.306780 CGTATAGGGATCCGGATTTGCTT 60.307 47.826 20.22 1.91 0.00 3.91
404 405 4.081862 CGTATAGGGATCCGGATTTGCTTA 60.082 45.833 20.22 4.49 0.00 3.09
405 406 2.938956 AGGGATCCGGATTTGCTTAG 57.061 50.000 20.22 0.00 0.00 2.18
406 407 2.127708 AGGGATCCGGATTTGCTTAGT 58.872 47.619 20.22 0.00 0.00 2.24
407 408 2.104963 AGGGATCCGGATTTGCTTAGTC 59.895 50.000 20.22 2.51 0.00 2.59
408 409 2.495084 GGATCCGGATTTGCTTAGTCC 58.505 52.381 20.22 8.91 0.00 3.85
414 415 2.433436 GGATTTGCTTAGTCCGGTTGT 58.567 47.619 0.00 0.00 0.00 3.32
415 416 3.602483 GGATTTGCTTAGTCCGGTTGTA 58.398 45.455 0.00 0.00 0.00 2.41
416 417 3.621715 GGATTTGCTTAGTCCGGTTGTAG 59.378 47.826 0.00 0.00 0.00 2.74
417 418 4.501071 GATTTGCTTAGTCCGGTTGTAGA 58.499 43.478 0.00 0.00 0.00 2.59
418 419 4.546829 TTTGCTTAGTCCGGTTGTAGAT 57.453 40.909 0.00 0.00 0.00 1.98
419 420 3.520290 TGCTTAGTCCGGTTGTAGATG 57.480 47.619 0.00 0.00 0.00 2.90
420 421 2.202566 GCTTAGTCCGGTTGTAGATGC 58.797 52.381 0.00 0.00 0.00 3.91
421 422 2.159085 GCTTAGTCCGGTTGTAGATGCT 60.159 50.000 0.00 0.00 0.00 3.79
422 423 3.707793 CTTAGTCCGGTTGTAGATGCTC 58.292 50.000 0.00 0.00 0.00 4.26
423 424 1.853963 AGTCCGGTTGTAGATGCTCT 58.146 50.000 0.00 0.00 0.00 4.09
424 425 2.180276 AGTCCGGTTGTAGATGCTCTT 58.820 47.619 0.00 0.00 0.00 2.85
425 426 3.362706 AGTCCGGTTGTAGATGCTCTTA 58.637 45.455 0.00 0.00 0.00 2.10
426 427 3.381908 AGTCCGGTTGTAGATGCTCTTAG 59.618 47.826 0.00 0.00 0.00 2.18
427 428 2.693591 TCCGGTTGTAGATGCTCTTAGG 59.306 50.000 0.00 0.00 0.00 2.69
428 429 2.693591 CCGGTTGTAGATGCTCTTAGGA 59.306 50.000 0.00 0.00 0.00 2.94
429 430 3.491104 CCGGTTGTAGATGCTCTTAGGAC 60.491 52.174 0.00 0.00 0.00 3.85
430 431 3.130516 CGGTTGTAGATGCTCTTAGGACA 59.869 47.826 0.00 0.00 0.00 4.02
431 432 4.381612 CGGTTGTAGATGCTCTTAGGACAA 60.382 45.833 0.00 0.00 0.00 3.18
432 433 5.488341 GGTTGTAGATGCTCTTAGGACAAA 58.512 41.667 0.00 0.00 27.16 2.83
433 434 5.938125 GGTTGTAGATGCTCTTAGGACAAAA 59.062 40.000 0.00 0.00 27.16 2.44
434 435 6.128254 GGTTGTAGATGCTCTTAGGACAAAAC 60.128 42.308 0.00 0.00 27.16 2.43
435 436 6.109156 TGTAGATGCTCTTAGGACAAAACA 57.891 37.500 0.00 0.00 0.00 2.83
436 437 6.711277 TGTAGATGCTCTTAGGACAAAACAT 58.289 36.000 0.00 0.00 0.00 2.71
437 438 6.595326 TGTAGATGCTCTTAGGACAAAACATG 59.405 38.462 0.00 0.00 0.00 3.21
438 439 4.946157 AGATGCTCTTAGGACAAAACATGG 59.054 41.667 0.00 0.00 0.00 3.66
439 440 3.420893 TGCTCTTAGGACAAAACATGGG 58.579 45.455 0.00 0.00 0.00 4.00
440 441 3.073798 TGCTCTTAGGACAAAACATGGGA 59.926 43.478 0.00 0.00 0.00 4.37
441 442 4.263905 TGCTCTTAGGACAAAACATGGGAT 60.264 41.667 0.00 0.00 0.00 3.85
442 443 4.096984 GCTCTTAGGACAAAACATGGGATG 59.903 45.833 0.00 0.00 0.00 3.51
443 444 4.599041 TCTTAGGACAAAACATGGGATGG 58.401 43.478 0.00 0.00 33.60 3.51
444 445 1.560505 AGGACAAAACATGGGATGGC 58.439 50.000 0.00 0.00 33.60 4.40
445 446 1.203162 AGGACAAAACATGGGATGGCA 60.203 47.619 0.00 0.00 33.60 4.92
446 447 1.205417 GGACAAAACATGGGATGGCAG 59.795 52.381 0.00 0.00 33.60 4.85
447 448 1.895131 GACAAAACATGGGATGGCAGT 59.105 47.619 0.00 0.00 33.60 4.40
448 449 1.895131 ACAAAACATGGGATGGCAGTC 59.105 47.619 0.00 0.00 33.60 3.51
449 450 1.205417 CAAAACATGGGATGGCAGTCC 59.795 52.381 0.00 7.25 37.56 3.85
451 452 0.323725 AACATGGGATGGCAGTCCAC 60.324 55.000 12.82 5.88 46.92 4.02
452 453 1.210204 ACATGGGATGGCAGTCCACT 61.210 55.000 12.82 0.61 46.92 4.00
453 454 0.750546 CATGGGATGGCAGTCCACTG 60.751 60.000 12.82 2.06 46.92 3.66
454 455 0.915872 ATGGGATGGCAGTCCACTGA 60.916 55.000 11.04 0.00 46.92 3.41
455 456 1.133181 TGGGATGGCAGTCCACTGAA 61.133 55.000 11.04 0.00 46.92 3.02
456 457 0.257039 GGGATGGCAGTCCACTGAAT 59.743 55.000 11.04 3.25 46.92 2.57
457 458 1.341383 GGGATGGCAGTCCACTGAATT 60.341 52.381 11.04 0.00 46.92 2.17
458 459 2.450476 GGATGGCAGTCCACTGAATTT 58.550 47.619 11.04 0.00 46.92 1.82
459 460 2.165030 GGATGGCAGTCCACTGAATTTG 59.835 50.000 11.04 0.00 46.92 2.32
460 461 1.619654 TGGCAGTCCACTGAATTTGG 58.380 50.000 11.04 0.00 46.59 3.28
461 462 1.144708 TGGCAGTCCACTGAATTTGGA 59.855 47.619 11.04 0.00 46.59 3.53
462 463 1.815003 GGCAGTCCACTGAATTTGGAG 59.185 52.381 11.04 0.00 44.06 3.86
463 464 2.508526 GCAGTCCACTGAATTTGGAGT 58.491 47.619 11.04 0.00 46.10 3.85
464 465 2.887152 GCAGTCCACTGAATTTGGAGTT 59.113 45.455 11.04 0.00 43.19 3.01
465 466 4.072131 GCAGTCCACTGAATTTGGAGTTA 58.928 43.478 11.04 0.00 43.19 2.24
466 467 4.154918 GCAGTCCACTGAATTTGGAGTTAG 59.845 45.833 11.04 0.00 43.19 2.34
467 468 5.308825 CAGTCCACTGAATTTGGAGTTAGT 58.691 41.667 0.00 0.00 43.19 2.24
468 469 5.180117 CAGTCCACTGAATTTGGAGTTAGTG 59.820 44.000 0.00 0.00 43.19 2.74
469 470 5.071788 AGTCCACTGAATTTGGAGTTAGTGA 59.928 40.000 0.00 0.00 43.19 3.41
470 471 5.940470 GTCCACTGAATTTGGAGTTAGTGAT 59.060 40.000 0.00 0.00 44.06 3.06
471 472 6.092807 GTCCACTGAATTTGGAGTTAGTGATC 59.907 42.308 0.00 0.00 44.06 2.92
472 473 5.355350 CCACTGAATTTGGAGTTAGTGATCC 59.645 44.000 0.00 0.00 38.16 3.36
473 474 5.063944 CACTGAATTTGGAGTTAGTGATCCG 59.936 44.000 0.00 0.00 38.16 4.18
474 475 3.938963 TGAATTTGGAGTTAGTGATCCGC 59.061 43.478 0.00 0.00 38.52 5.54
475 476 2.396590 TTTGGAGTTAGTGATCCGCC 57.603 50.000 0.00 0.00 38.52 6.13
476 477 1.271856 TTGGAGTTAGTGATCCGCCA 58.728 50.000 0.00 0.00 38.52 5.69
477 478 0.824109 TGGAGTTAGTGATCCGCCAG 59.176 55.000 0.00 0.00 38.52 4.85
478 479 1.112113 GGAGTTAGTGATCCGCCAGA 58.888 55.000 0.00 0.00 0.00 3.86
479 480 1.480954 GGAGTTAGTGATCCGCCAGAA 59.519 52.381 0.00 0.00 0.00 3.02
480 481 2.093658 GGAGTTAGTGATCCGCCAGAAA 60.094 50.000 0.00 0.00 0.00 2.52
481 482 3.596214 GAGTTAGTGATCCGCCAGAAAA 58.404 45.455 0.00 0.00 0.00 2.29
482 483 4.000988 GAGTTAGTGATCCGCCAGAAAAA 58.999 43.478 0.00 0.00 0.00 1.94
483 484 3.751698 AGTTAGTGATCCGCCAGAAAAAC 59.248 43.478 0.00 0.00 0.00 2.43
484 485 2.568623 AGTGATCCGCCAGAAAAACT 57.431 45.000 0.00 0.00 0.00 2.66
485 486 3.695830 AGTGATCCGCCAGAAAAACTA 57.304 42.857 0.00 0.00 0.00 2.24
486 487 3.335579 AGTGATCCGCCAGAAAAACTAC 58.664 45.455 0.00 0.00 0.00 2.73
487 488 2.418976 GTGATCCGCCAGAAAAACTACC 59.581 50.000 0.00 0.00 0.00 3.18
488 489 2.039216 TGATCCGCCAGAAAAACTACCA 59.961 45.455 0.00 0.00 0.00 3.25
489 490 2.871096 TCCGCCAGAAAAACTACCAT 57.129 45.000 0.00 0.00 0.00 3.55
490 491 3.149005 TCCGCCAGAAAAACTACCATT 57.851 42.857 0.00 0.00 0.00 3.16
491 492 2.817258 TCCGCCAGAAAAACTACCATTG 59.183 45.455 0.00 0.00 0.00 2.82
492 493 2.556622 CCGCCAGAAAAACTACCATTGT 59.443 45.455 0.00 0.00 0.00 2.71
493 494 3.754323 CCGCCAGAAAAACTACCATTGTA 59.246 43.478 0.00 0.00 0.00 2.41
494 495 4.398044 CCGCCAGAAAAACTACCATTGTAT 59.602 41.667 0.00 0.00 0.00 2.29
495 496 5.587043 CCGCCAGAAAAACTACCATTGTATA 59.413 40.000 0.00 0.00 0.00 1.47
496 497 6.262273 CCGCCAGAAAAACTACCATTGTATAT 59.738 38.462 0.00 0.00 0.00 0.86
497 498 7.201785 CCGCCAGAAAAACTACCATTGTATATT 60.202 37.037 0.00 0.00 0.00 1.28
498 499 8.188139 CGCCAGAAAAACTACCATTGTATATTT 58.812 33.333 0.00 0.00 0.00 1.40
554 555 6.313959 GTTGAAAACTTGAAACGGTCTTTC 57.686 37.500 0.00 0.00 45.32 2.62
555 556 5.890424 TGAAAACTTGAAACGGTCTTTCT 57.110 34.783 0.00 0.00 0.00 2.52
556 557 5.636837 TGAAAACTTGAAACGGTCTTTCTG 58.363 37.500 0.00 0.00 0.00 3.02
557 558 5.413213 TGAAAACTTGAAACGGTCTTTCTGA 59.587 36.000 0.00 0.00 0.00 3.27
558 559 5.890424 AAACTTGAAACGGTCTTTCTGAA 57.110 34.783 0.00 0.00 0.00 3.02
559 560 5.890424 AACTTGAAACGGTCTTTCTGAAA 57.110 34.783 2.44 2.44 0.00 2.69
560 561 5.890424 ACTTGAAACGGTCTTTCTGAAAA 57.110 34.783 4.18 0.00 0.00 2.29
561 562 6.451064 ACTTGAAACGGTCTTTCTGAAAAT 57.549 33.333 4.18 0.00 0.00 1.82
562 563 6.863275 ACTTGAAACGGTCTTTCTGAAAATT 58.137 32.000 4.18 0.00 0.00 1.82
563 564 7.320399 ACTTGAAACGGTCTTTCTGAAAATTT 58.680 30.769 4.18 1.14 0.00 1.82
564 565 7.817478 ACTTGAAACGGTCTTTCTGAAAATTTT 59.183 29.630 2.28 2.28 0.00 1.82
565 566 7.518731 TGAAACGGTCTTTCTGAAAATTTTG 57.481 32.000 8.47 0.00 0.00 2.44
566 567 7.316640 TGAAACGGTCTTTCTGAAAATTTTGA 58.683 30.769 8.47 0.00 0.00 2.69
567 568 7.274686 TGAAACGGTCTTTCTGAAAATTTTGAC 59.725 33.333 8.47 8.07 0.00 3.18
568 569 6.451064 ACGGTCTTTCTGAAAATTTTGACT 57.549 33.333 8.47 0.00 0.00 3.41
569 570 6.265577 ACGGTCTTTCTGAAAATTTTGACTG 58.734 36.000 18.89 18.89 32.52 3.51
570 571 5.173854 CGGTCTTTCTGAAAATTTTGACTGC 59.826 40.000 8.47 0.00 0.00 4.40
571 572 5.173854 GGTCTTTCTGAAAATTTTGACTGCG 59.826 40.000 8.47 0.00 0.00 5.18
572 573 4.739716 TCTTTCTGAAAATTTTGACTGCGC 59.260 37.500 8.47 0.00 0.00 6.09
573 574 2.649516 TCTGAAAATTTTGACTGCGCG 58.350 42.857 8.47 0.00 0.00 6.86
574 575 1.123038 CTGAAAATTTTGACTGCGCGC 59.877 47.619 27.26 27.26 0.00 6.86
575 576 1.268999 TGAAAATTTTGACTGCGCGCT 60.269 42.857 33.29 13.70 0.00 5.92
576 577 1.786579 GAAAATTTTGACTGCGCGCTT 59.213 42.857 33.29 19.58 0.00 4.68
577 578 1.851658 AAATTTTGACTGCGCGCTTT 58.148 40.000 33.29 19.16 0.00 3.51
578 579 1.851658 AATTTTGACTGCGCGCTTTT 58.148 40.000 33.29 16.28 0.00 2.27
579 580 1.851658 ATTTTGACTGCGCGCTTTTT 58.148 40.000 33.29 13.46 0.00 1.94
603 604 5.493133 TTTTAGACAATTTGACTGCGTGT 57.507 34.783 10.94 0.00 0.00 4.49
604 605 5.493133 TTTAGACAATTTGACTGCGTGTT 57.507 34.783 10.94 0.00 0.00 3.32
605 606 3.338818 AGACAATTTGACTGCGTGTTG 57.661 42.857 2.79 0.00 0.00 3.33
606 607 2.682856 AGACAATTTGACTGCGTGTTGT 59.317 40.909 2.79 0.00 32.98 3.32
607 608 2.783284 GACAATTTGACTGCGTGTTGTG 59.217 45.455 2.79 0.00 30.70 3.33
608 609 2.163412 ACAATTTGACTGCGTGTTGTGT 59.837 40.909 2.79 0.00 0.00 3.72
609 610 3.178267 CAATTTGACTGCGTGTTGTGTT 58.822 40.909 0.00 0.00 0.00 3.32
610 611 2.254918 TTTGACTGCGTGTTGTGTTG 57.745 45.000 0.00 0.00 0.00 3.33
611 612 0.179176 TTGACTGCGTGTTGTGTTGC 60.179 50.000 0.00 0.00 0.00 4.17
612 613 1.301677 TGACTGCGTGTTGTGTTGCA 61.302 50.000 0.00 0.00 35.75 4.08
613 614 0.029300 GACTGCGTGTTGTGTTGCAT 59.971 50.000 0.00 0.00 36.64 3.96
614 615 0.455410 ACTGCGTGTTGTGTTGCATT 59.545 45.000 0.00 0.00 36.64 3.56
615 616 0.847670 CTGCGTGTTGTGTTGCATTG 59.152 50.000 0.00 0.00 36.64 2.82
616 617 1.144565 TGCGTGTTGTGTTGCATTGC 61.145 50.000 0.46 0.46 31.31 3.56
617 618 0.871163 GCGTGTTGTGTTGCATTGCT 60.871 50.000 10.49 0.00 0.00 3.91
618 619 0.847670 CGTGTTGTGTTGCATTGCTG 59.152 50.000 10.49 0.00 0.00 4.41
651 652 2.330231 TTTGAGTAACGCATTGCTGC 57.670 45.000 7.12 0.00 45.31 5.25
663 664 3.146618 CATTGCTGCAAGAGGATCAAC 57.853 47.619 20.72 0.00 37.82 3.18
664 665 2.574006 TTGCTGCAAGAGGATCAACT 57.426 45.000 11.69 0.00 37.82 3.16
665 666 2.105006 TGCTGCAAGAGGATCAACTC 57.895 50.000 0.00 0.00 37.82 3.01
666 667 1.005340 GCTGCAAGAGGATCAACTCG 58.995 55.000 0.00 0.00 42.31 4.18
667 668 1.674221 GCTGCAAGAGGATCAACTCGT 60.674 52.381 0.00 0.00 42.31 4.18
668 669 2.693069 CTGCAAGAGGATCAACTCGTT 58.307 47.619 0.00 0.00 42.31 3.85
669 670 3.070018 CTGCAAGAGGATCAACTCGTTT 58.930 45.455 0.00 0.00 42.31 3.60
670 671 2.807967 TGCAAGAGGATCAACTCGTTTG 59.192 45.455 0.00 0.00 42.31 2.93
671 672 2.413371 GCAAGAGGATCAACTCGTTTGC 60.413 50.000 8.92 8.92 42.31 3.68
672 673 3.070018 CAAGAGGATCAACTCGTTTGCT 58.930 45.455 0.00 0.00 42.31 3.91
673 674 4.245660 CAAGAGGATCAACTCGTTTGCTA 58.754 43.478 0.00 0.00 42.31 3.49
674 675 4.744795 AGAGGATCAACTCGTTTGCTAT 57.255 40.909 0.00 0.00 42.31 2.97
675 676 5.091261 AGAGGATCAACTCGTTTGCTATT 57.909 39.130 0.00 0.00 42.31 1.73
676 677 5.112686 AGAGGATCAACTCGTTTGCTATTC 58.887 41.667 0.00 0.00 42.31 1.75
677 678 3.865745 AGGATCAACTCGTTTGCTATTCG 59.134 43.478 0.00 0.00 34.88 3.34
678 679 3.863424 GGATCAACTCGTTTGCTATTCGA 59.137 43.478 0.00 0.00 34.88 3.71
679 680 7.916650 GAGGATCAACTCGTTTGCTATTCGAG 61.917 46.154 16.49 16.49 44.71 4.04
689 690 1.369321 CTATTCGAGCTGGAGGCCC 59.631 63.158 0.00 0.00 43.05 5.80
690 691 1.382557 TATTCGAGCTGGAGGCCCA 60.383 57.895 0.00 0.00 43.05 5.36
691 692 0.980754 TATTCGAGCTGGAGGCCCAA 60.981 55.000 0.00 0.00 42.98 4.12
692 693 1.852157 ATTCGAGCTGGAGGCCCAAA 61.852 55.000 0.00 0.00 42.98 3.28
693 694 2.034066 CGAGCTGGAGGCCCAAAA 59.966 61.111 0.00 0.00 42.98 2.44
694 695 2.042831 CGAGCTGGAGGCCCAAAAG 61.043 63.158 0.00 0.00 42.98 2.27
695 696 1.075659 GAGCTGGAGGCCCAAAAGT 59.924 57.895 0.00 0.00 42.98 2.66
696 697 0.962855 GAGCTGGAGGCCCAAAAGTC 60.963 60.000 0.00 0.00 42.98 3.01
697 698 2.335712 GCTGGAGGCCCAAAAGTCG 61.336 63.158 0.00 0.00 42.98 4.18
698 699 2.282180 TGGAGGCCCAAAAGTCGC 60.282 61.111 0.00 0.00 40.09 5.19
699 700 3.062466 GGAGGCCCAAAAGTCGCC 61.062 66.667 0.00 0.00 43.35 5.54
700 701 2.282180 GAGGCCCAAAAGTCGCCA 60.282 61.111 0.00 0.00 45.56 5.69
701 702 2.282462 AGGCCCAAAAGTCGCCAG 60.282 61.111 0.00 0.00 45.56 4.85
824 836 2.436115 GGGAAAGGGAAGCGACGG 60.436 66.667 0.00 0.00 0.00 4.79
831 843 4.790861 GGAAGCGACGGTCCGGTC 62.791 72.222 17.28 9.75 39.52 4.79
854 866 1.355916 CCTCCTCGTCGTCGAATCC 59.644 63.158 6.19 0.00 45.61 3.01
855 867 1.355916 CTCCTCGTCGTCGAATCCC 59.644 63.158 6.19 0.00 45.61 3.85
856 868 2.024305 CCTCGTCGTCGAATCCCG 59.976 66.667 6.19 0.00 45.61 5.14
892 904 1.234615 CGCTCCTCTCTCCCGATCTC 61.235 65.000 0.00 0.00 0.00 2.75
907 919 2.287909 CGATCTCCTCCCTCGCTTTAAG 60.288 54.545 0.00 0.00 0.00 1.85
912 924 0.462759 CTCCCTCGCTTTAAGCCCAG 60.463 60.000 11.64 7.41 38.18 4.45
928 940 2.555123 CAGAATGGGTGGTTCGTGG 58.445 57.895 0.00 0.00 0.00 4.94
929 941 1.303317 AGAATGGGTGGTTCGTGGC 60.303 57.895 0.00 0.00 0.00 5.01
930 942 1.303317 GAATGGGTGGTTCGTGGCT 60.303 57.895 0.00 0.00 0.00 4.75
931 943 0.893727 GAATGGGTGGTTCGTGGCTT 60.894 55.000 0.00 0.00 0.00 4.35
932 944 0.893727 AATGGGTGGTTCGTGGCTTC 60.894 55.000 0.00 0.00 0.00 3.86
933 945 3.047877 GGGTGGTTCGTGGCTTCG 61.048 66.667 0.00 0.00 0.00 3.79
934 946 2.280592 GGTGGTTCGTGGCTTCGT 60.281 61.111 3.16 0.00 0.00 3.85
946 958 2.514592 CTTCGTGCCCCGCATCAT 60.515 61.111 0.00 0.00 41.91 2.45
952 964 0.593128 GTGCCCCGCATCATAATGAC 59.407 55.000 0.00 0.00 41.91 3.06
971 983 3.815569 CTCCGCGCTCTGATCCGAC 62.816 68.421 5.56 0.00 0.00 4.79
984 996 0.395311 ATCCGACCGTCTCCAGCTTA 60.395 55.000 0.00 0.00 0.00 3.09
1089 1120 2.358737 AAGCGCAAGAACCCTCGG 60.359 61.111 11.47 0.00 43.02 4.63
1114 1145 0.456995 CACGGAGAAGCTCGAGTTCC 60.457 60.000 15.13 14.30 0.00 3.62
1238 1278 2.820787 CCTGTAACGAACCTGAGAGAGT 59.179 50.000 0.00 0.00 0.00 3.24
1240 1280 3.220110 TGTAACGAACCTGAGAGAGTGT 58.780 45.455 0.00 0.00 0.00 3.55
1241 1281 2.802787 AACGAACCTGAGAGAGTGTG 57.197 50.000 0.00 0.00 0.00 3.82
1242 1282 1.982660 ACGAACCTGAGAGAGTGTGA 58.017 50.000 0.00 0.00 0.00 3.58
1243 1283 1.883275 ACGAACCTGAGAGAGTGTGAG 59.117 52.381 0.00 0.00 0.00 3.51
1244 1284 2.155279 CGAACCTGAGAGAGTGTGAGA 58.845 52.381 0.00 0.00 0.00 3.27
1245 1285 2.161410 CGAACCTGAGAGAGTGTGAGAG 59.839 54.545 0.00 0.00 0.00 3.20
1246 1286 3.417101 GAACCTGAGAGAGTGTGAGAGA 58.583 50.000 0.00 0.00 0.00 3.10
1247 1287 3.071874 ACCTGAGAGAGTGTGAGAGAG 57.928 52.381 0.00 0.00 0.00 3.20
1248 1288 2.642311 ACCTGAGAGAGTGTGAGAGAGA 59.358 50.000 0.00 0.00 0.00 3.10
1249 1289 3.273434 CCTGAGAGAGTGTGAGAGAGAG 58.727 54.545 0.00 0.00 0.00 3.20
1250 1290 3.055167 CCTGAGAGAGTGTGAGAGAGAGA 60.055 52.174 0.00 0.00 0.00 3.10
1251 1291 4.186926 CTGAGAGAGTGTGAGAGAGAGAG 58.813 52.174 0.00 0.00 0.00 3.20
1252 1292 3.837731 TGAGAGAGTGTGAGAGAGAGAGA 59.162 47.826 0.00 0.00 0.00 3.10
1348 1394 1.580845 GCGGTGCAGCTCATCTGTTT 61.581 55.000 14.92 0.00 44.66 2.83
1353 1399 2.555757 GTGCAGCTCATCTGTTTCCTTT 59.444 45.455 0.00 0.00 44.66 3.11
1404 1450 1.153289 CCATGAAGCTCCTGGTCCG 60.153 63.158 0.00 0.00 29.02 4.79
1858 1911 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
1872 1927 9.757227 CTCTCTCTCTCTTCTTGAAAACTAAAA 57.243 33.333 0.00 0.00 0.00 1.52
1889 1944 5.793817 ACTAAAAATGGAAATGGAGGTTGC 58.206 37.500 0.00 0.00 0.00 4.17
1899 1954 2.118313 TGGAGGTTGCTCACATGATG 57.882 50.000 0.00 0.00 0.00 3.07
1958 2013 6.029607 CCTTCATACAAATTTCGTGTGATGG 58.970 40.000 21.99 21.99 40.70 3.51
1962 2017 6.315144 TCATACAAATTTCGTGTGATGGTAGG 59.685 38.462 12.62 2.25 30.63 3.18
1968 2023 2.181125 TCGTGTGATGGTAGGGCTTTA 58.819 47.619 0.00 0.00 0.00 1.85
1978 2033 3.714798 TGGTAGGGCTTTATTCGGAGATT 59.285 43.478 0.00 0.00 35.04 2.40
1979 2034 4.065789 GGTAGGGCTTTATTCGGAGATTG 58.934 47.826 0.00 0.00 35.04 2.67
1980 2035 2.576615 AGGGCTTTATTCGGAGATTGC 58.423 47.619 0.00 0.00 35.04 3.56
1982 2037 2.291741 GGGCTTTATTCGGAGATTGCAG 59.708 50.000 0.00 0.00 35.04 4.41
2016 2071 9.042450 TCAGTAAAATTCTCCATGTTAGTAGGA 57.958 33.333 0.00 0.00 0.00 2.94
2027 2082 9.116067 CTCCATGTTAGTAGGATATACTCTAGC 57.884 40.741 0.00 0.00 0.00 3.42
2028 2083 8.612145 TCCATGTTAGTAGGATATACTCTAGCA 58.388 37.037 10.91 10.91 0.00 3.49
2029 2084 9.415008 CCATGTTAGTAGGATATACTCTAGCAT 57.585 37.037 13.28 13.28 34.60 3.79
2045 2100 8.900983 ACTCTAGCATTCAGATAAAATTCTCC 57.099 34.615 0.00 0.00 0.00 3.71
2046 2101 8.489489 ACTCTAGCATTCAGATAAAATTCTCCA 58.511 33.333 0.00 0.00 0.00 3.86
2047 2102 9.504708 CTCTAGCATTCAGATAAAATTCTCCAT 57.495 33.333 0.00 0.00 0.00 3.41
2048 2103 9.281371 TCTAGCATTCAGATAAAATTCTCCATG 57.719 33.333 0.00 0.00 0.00 3.66
2114 2169 1.525077 GGACAACAGGACGGTGCAA 60.525 57.895 1.61 0.00 0.00 4.08
2115 2170 0.889186 GGACAACAGGACGGTGCAAT 60.889 55.000 1.61 0.00 0.00 3.56
2123 2178 1.450312 GACGGTGCAATCTCAGGGG 60.450 63.158 0.00 0.00 0.00 4.79
2124 2179 2.825836 CGGTGCAATCTCAGGGGC 60.826 66.667 0.00 0.00 0.00 5.80
2160 2215 3.450904 TCCACCTAATTCTAGTGGCAGT 58.549 45.455 13.89 0.00 35.33 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.952497 CTGCGGCAAGTGACAGATGT 60.952 55.000 3.44 0.00 31.67 3.06
1 2 1.792301 CTGCGGCAAGTGACAGATG 59.208 57.895 3.44 0.00 31.67 2.90
2 3 2.037136 GCTGCGGCAAGTGACAGAT 61.037 57.895 14.08 0.00 38.54 2.90
3 4 2.666190 GCTGCGGCAAGTGACAGA 60.666 61.111 14.08 0.00 38.54 3.41
4 5 2.667536 AGCTGCGGCAAGTGACAG 60.668 61.111 21.93 0.00 41.70 3.51
5 6 2.666190 GAGCTGCGGCAAGTGACA 60.666 61.111 21.93 0.00 41.70 3.58
6 7 1.580845 AATGAGCTGCGGCAAGTGAC 61.581 55.000 21.93 4.25 41.70 3.67
7 8 1.302752 AATGAGCTGCGGCAAGTGA 60.303 52.632 21.93 0.00 41.70 3.41
8 9 1.154093 CAATGAGCTGCGGCAAGTG 60.154 57.895 21.93 13.14 41.70 3.16
9 10 2.338015 CCAATGAGCTGCGGCAAGT 61.338 57.895 21.93 3.50 41.70 3.16
10 11 2.488355 CCAATGAGCTGCGGCAAG 59.512 61.111 21.93 4.01 41.70 4.01
11 12 3.063704 CCCAATGAGCTGCGGCAA 61.064 61.111 21.93 7.97 41.70 4.52
20 21 2.745884 TTGTCCGCGCCCAATGAG 60.746 61.111 0.00 0.00 0.00 2.90
21 22 2.745884 CTTGTCCGCGCCCAATGA 60.746 61.111 0.00 0.00 0.00 2.57
22 23 4.481112 GCTTGTCCGCGCCCAATG 62.481 66.667 0.00 1.38 0.00 2.82
59 60 4.643387 ACAAGTCGTGGGCAGCCC 62.643 66.667 25.54 25.54 45.71 5.19
60 61 2.594592 AACAAGTCGTGGGCAGCC 60.595 61.111 1.26 1.26 0.00 4.85
61 62 2.946762 GAACAAGTCGTGGGCAGC 59.053 61.111 0.00 0.00 0.00 5.25
62 63 3.244105 CGAACAAGTCGTGGGCAG 58.756 61.111 0.00 0.00 45.09 4.85
70 71 2.400399 TGTCATTCCGTCGAACAAGTC 58.600 47.619 0.00 0.00 0.00 3.01
71 72 2.035449 TCTGTCATTCCGTCGAACAAGT 59.965 45.455 0.00 0.00 0.00 3.16
72 73 2.672714 TCTGTCATTCCGTCGAACAAG 58.327 47.619 0.00 0.00 0.00 3.16
73 74 2.798283 GTTCTGTCATTCCGTCGAACAA 59.202 45.455 0.00 0.00 33.05 2.83
74 75 2.223852 TGTTCTGTCATTCCGTCGAACA 60.224 45.455 0.00 0.00 38.57 3.18
75 76 2.400399 TGTTCTGTCATTCCGTCGAAC 58.600 47.619 0.00 0.00 33.34 3.95
76 77 2.804697 TGTTCTGTCATTCCGTCGAA 57.195 45.000 0.00 0.00 0.00 3.71
77 78 2.295070 TCTTGTTCTGTCATTCCGTCGA 59.705 45.455 0.00 0.00 0.00 4.20
78 79 2.672714 TCTTGTTCTGTCATTCCGTCG 58.327 47.619 0.00 0.00 0.00 5.12
79 80 4.201628 CGATTCTTGTTCTGTCATTCCGTC 60.202 45.833 0.00 0.00 0.00 4.79
80 81 3.679980 CGATTCTTGTTCTGTCATTCCGT 59.320 43.478 0.00 0.00 0.00 4.69
81 82 3.062639 CCGATTCTTGTTCTGTCATTCCG 59.937 47.826 0.00 0.00 0.00 4.30
82 83 4.003648 ACCGATTCTTGTTCTGTCATTCC 58.996 43.478 0.00 0.00 0.00 3.01
83 84 6.313905 ACATACCGATTCTTGTTCTGTCATTC 59.686 38.462 0.00 0.00 0.00 2.67
84 85 6.173339 ACATACCGATTCTTGTTCTGTCATT 58.827 36.000 0.00 0.00 0.00 2.57
85 86 5.734720 ACATACCGATTCTTGTTCTGTCAT 58.265 37.500 0.00 0.00 0.00 3.06
86 87 5.147330 ACATACCGATTCTTGTTCTGTCA 57.853 39.130 0.00 0.00 0.00 3.58
87 88 6.095947 GAACATACCGATTCTTGTTCTGTC 57.904 41.667 7.25 0.00 42.82 3.51
95 96 5.003804 AGCAACAAGAACATACCGATTCTT 58.996 37.500 0.00 0.00 44.19 2.52
96 97 4.579869 AGCAACAAGAACATACCGATTCT 58.420 39.130 0.00 0.00 36.73 2.40
97 98 4.201822 GGAGCAACAAGAACATACCGATTC 60.202 45.833 0.00 0.00 0.00 2.52
98 99 3.689649 GGAGCAACAAGAACATACCGATT 59.310 43.478 0.00 0.00 0.00 3.34
99 100 3.055094 AGGAGCAACAAGAACATACCGAT 60.055 43.478 0.00 0.00 0.00 4.18
100 101 2.301870 AGGAGCAACAAGAACATACCGA 59.698 45.455 0.00 0.00 0.00 4.69
101 102 2.416547 CAGGAGCAACAAGAACATACCG 59.583 50.000 0.00 0.00 0.00 4.02
102 103 3.412386 ACAGGAGCAACAAGAACATACC 58.588 45.455 0.00 0.00 0.00 2.73
103 104 3.437049 GGACAGGAGCAACAAGAACATAC 59.563 47.826 0.00 0.00 0.00 2.39
104 105 3.674997 GGACAGGAGCAACAAGAACATA 58.325 45.455 0.00 0.00 0.00 2.29
105 106 2.508526 GGACAGGAGCAACAAGAACAT 58.491 47.619 0.00 0.00 0.00 2.71
106 107 1.810031 CGGACAGGAGCAACAAGAACA 60.810 52.381 0.00 0.00 0.00 3.18
107 108 0.868406 CGGACAGGAGCAACAAGAAC 59.132 55.000 0.00 0.00 0.00 3.01
108 109 0.756294 TCGGACAGGAGCAACAAGAA 59.244 50.000 0.00 0.00 0.00 2.52
109 110 0.033504 GTCGGACAGGAGCAACAAGA 59.966 55.000 2.62 0.00 0.00 3.02
110 111 0.951040 GGTCGGACAGGAGCAACAAG 60.951 60.000 10.76 0.00 34.64 3.16
111 112 1.070786 GGTCGGACAGGAGCAACAA 59.929 57.895 10.76 0.00 34.64 2.83
112 113 1.691195 TTGGTCGGACAGGAGCAACA 61.691 55.000 10.76 0.00 46.15 3.33
113 114 1.070786 TTGGTCGGACAGGAGCAAC 59.929 57.895 10.76 0.00 46.15 4.17
115 116 1.407656 AAGTTGGTCGGACAGGAGCA 61.408 55.000 10.76 0.00 42.20 4.26
116 117 0.250338 AAAGTTGGTCGGACAGGAGC 60.250 55.000 10.76 0.00 35.07 4.70
117 118 1.512926 CAAAGTTGGTCGGACAGGAG 58.487 55.000 10.76 0.00 0.00 3.69
118 119 0.534203 GCAAAGTTGGTCGGACAGGA 60.534 55.000 10.76 0.00 0.00 3.86
119 120 1.841663 CGCAAAGTTGGTCGGACAGG 61.842 60.000 10.76 0.00 0.00 4.00
120 121 1.157870 ACGCAAAGTTGGTCGGACAG 61.158 55.000 10.76 0.00 0.00 3.51
121 122 1.153329 ACGCAAAGTTGGTCGGACA 60.153 52.632 10.76 0.00 0.00 4.02
122 123 1.568025 GACGCAAAGTTGGTCGGAC 59.432 57.895 0.00 0.00 0.00 4.79
123 124 1.595929 GGACGCAAAGTTGGTCGGA 60.596 57.895 0.00 0.00 32.62 4.55
124 125 2.943653 GGACGCAAAGTTGGTCGG 59.056 61.111 0.00 0.00 32.62 4.79
125 126 2.549282 CGGACGCAAAGTTGGTCG 59.451 61.111 0.00 0.00 32.62 4.79
126 127 2.943653 CCGGACGCAAAGTTGGTC 59.056 61.111 0.00 0.00 0.00 4.02
127 128 3.284449 GCCGGACGCAAAGTTGGT 61.284 61.111 5.05 0.00 37.47 3.67
128 129 4.383602 CGCCGGACGCAAAGTTGG 62.384 66.667 5.05 0.00 37.30 3.77
129 130 3.295228 CTCGCCGGACGCAAAGTTG 62.295 63.158 5.05 0.00 43.23 3.16
130 131 3.041940 CTCGCCGGACGCAAAGTT 61.042 61.111 5.05 0.00 43.23 2.66
131 132 4.295119 ACTCGCCGGACGCAAAGT 62.295 61.111 5.05 5.47 43.23 2.66
132 133 3.777925 CACTCGCCGGACGCAAAG 61.778 66.667 5.05 4.79 43.23 2.77
133 134 3.583276 ATCACTCGCCGGACGCAAA 62.583 57.895 5.05 0.00 43.23 3.68
134 135 3.982372 GATCACTCGCCGGACGCAA 62.982 63.158 5.05 0.00 43.23 4.85
135 136 4.492160 GATCACTCGCCGGACGCA 62.492 66.667 5.05 0.00 43.23 5.24
137 138 3.758088 CTGGATCACTCGCCGGACG 62.758 68.421 5.05 9.12 45.62 4.79
138 139 2.105128 CTGGATCACTCGCCGGAC 59.895 66.667 5.05 0.00 32.05 4.79
139 140 3.838271 GCTGGATCACTCGCCGGA 61.838 66.667 5.05 0.00 32.05 5.14
140 141 4.899239 GGCTGGATCACTCGCCGG 62.899 72.222 0.00 0.00 32.22 6.13
141 142 4.147449 TGGCTGGATCACTCGCCG 62.147 66.667 0.00 0.00 45.36 6.46
142 143 2.202987 CTGGCTGGATCACTCGCC 60.203 66.667 0.00 0.86 42.78 5.54
143 144 2.894387 GCTGGCTGGATCACTCGC 60.894 66.667 0.00 0.00 0.00 5.03
144 145 2.202987 GGCTGGCTGGATCACTCG 60.203 66.667 0.00 0.00 0.00 4.18
145 146 1.153208 CTGGCTGGCTGGATCACTC 60.153 63.158 2.00 0.00 0.00 3.51
146 147 2.996395 CTGGCTGGCTGGATCACT 59.004 61.111 2.00 0.00 0.00 3.41
147 148 2.827642 GCTGGCTGGCTGGATCAC 60.828 66.667 9.98 0.00 0.00 3.06
148 149 4.478371 CGCTGGCTGGCTGGATCA 62.478 66.667 9.98 0.00 0.00 2.92
149 150 4.166888 TCGCTGGCTGGCTGGATC 62.167 66.667 9.98 0.00 0.00 3.36
150 151 4.172512 CTCGCTGGCTGGCTGGAT 62.173 66.667 9.98 0.00 0.00 3.41
160 161 1.890979 GTGATGGATGCCTCGCTGG 60.891 63.158 0.00 0.00 39.35 4.85
161 162 2.242572 CGTGATGGATGCCTCGCTG 61.243 63.158 1.97 0.00 0.00 5.18
162 163 2.107750 CGTGATGGATGCCTCGCT 59.892 61.111 1.97 0.00 0.00 4.93
163 164 3.643978 GCGTGATGGATGCCTCGC 61.644 66.667 0.00 0.00 37.17 5.03
164 165 1.953138 GAGCGTGATGGATGCCTCG 60.953 63.158 0.00 0.00 37.28 4.63
165 166 1.953138 CGAGCGTGATGGATGCCTC 60.953 63.158 0.00 0.00 37.28 4.70
166 167 1.960040 TTCGAGCGTGATGGATGCCT 61.960 55.000 0.00 0.00 37.28 4.75
167 168 1.521457 TTCGAGCGTGATGGATGCC 60.521 57.895 0.00 0.00 37.28 4.40
168 169 1.083806 TGTTCGAGCGTGATGGATGC 61.084 55.000 0.00 0.00 36.77 3.91
169 170 1.575244 ATGTTCGAGCGTGATGGATG 58.425 50.000 0.00 0.00 0.00 3.51
170 171 1.935873 CAATGTTCGAGCGTGATGGAT 59.064 47.619 0.00 0.00 0.00 3.41
171 172 1.067213 TCAATGTTCGAGCGTGATGGA 60.067 47.619 0.00 0.00 0.00 3.41
172 173 1.358877 TCAATGTTCGAGCGTGATGG 58.641 50.000 0.00 0.00 0.00 3.51
173 174 3.663464 AATCAATGTTCGAGCGTGATG 57.337 42.857 15.69 3.53 0.00 3.07
174 175 4.685169 AAAATCAATGTTCGAGCGTGAT 57.315 36.364 11.03 11.03 0.00 3.06
175 176 4.481930 AAAAATCAATGTTCGAGCGTGA 57.518 36.364 7.70 7.70 0.00 4.35
195 196 1.967066 ACAATCCGGACATGCCAAAAA 59.033 42.857 6.12 0.00 35.94 1.94
196 197 1.626686 ACAATCCGGACATGCCAAAA 58.373 45.000 6.12 0.00 35.94 2.44
197 198 1.271934 CAACAATCCGGACATGCCAAA 59.728 47.619 6.12 0.00 35.94 3.28
198 199 0.887247 CAACAATCCGGACATGCCAA 59.113 50.000 6.12 0.00 35.94 4.52
199 200 0.037447 TCAACAATCCGGACATGCCA 59.963 50.000 6.12 0.00 35.94 4.92
200 201 1.173043 TTCAACAATCCGGACATGCC 58.827 50.000 6.12 0.00 0.00 4.40
201 202 3.508744 ATTTCAACAATCCGGACATGC 57.491 42.857 6.12 0.00 0.00 4.06
202 203 6.375945 TCATATTTCAACAATCCGGACATG 57.624 37.500 6.12 12.37 0.00 3.21
203 204 7.587037 AATCATATTTCAACAATCCGGACAT 57.413 32.000 6.12 0.00 0.00 3.06
204 205 7.093988 ACAAATCATATTTCAACAATCCGGACA 60.094 33.333 6.12 0.00 0.00 4.02
205 206 7.257722 ACAAATCATATTTCAACAATCCGGAC 58.742 34.615 6.12 0.00 0.00 4.79
206 207 7.403312 ACAAATCATATTTCAACAATCCGGA 57.597 32.000 6.61 6.61 0.00 5.14
207 208 8.477984 AAACAAATCATATTTCAACAATCCGG 57.522 30.769 0.00 0.00 0.00 5.14
208 209 9.743937 CAAAACAAATCATATTTCAACAATCCG 57.256 29.630 0.00 0.00 0.00 4.18
209 210 9.545611 GCAAAACAAATCATATTTCAACAATCC 57.454 29.630 0.00 0.00 0.00 3.01
213 214 9.932699 CAAAGCAAAACAAATCATATTTCAACA 57.067 25.926 0.00 0.00 0.00 3.33
214 215 9.934190 ACAAAGCAAAACAAATCATATTTCAAC 57.066 25.926 0.00 0.00 0.00 3.18
221 222 9.766277 GTTTCAAACAAAGCAAAACAAATCATA 57.234 25.926 0.00 0.00 31.72 2.15
222 223 8.513774 AGTTTCAAACAAAGCAAAACAAATCAT 58.486 25.926 2.41 0.00 33.37 2.45
223 224 7.869800 AGTTTCAAACAAAGCAAAACAAATCA 58.130 26.923 2.41 0.00 33.37 2.57
224 225 9.986833 ATAGTTTCAAACAAAGCAAAACAAATC 57.013 25.926 2.41 0.00 33.37 2.17
226 227 9.604626 CAATAGTTTCAAACAAAGCAAAACAAA 57.395 25.926 2.41 0.00 33.37 2.83
227 228 8.993121 TCAATAGTTTCAAACAAAGCAAAACAA 58.007 25.926 2.41 0.00 33.37 2.83
228 229 8.539770 TCAATAGTTTCAAACAAAGCAAAACA 57.460 26.923 2.41 0.00 33.37 2.83
229 230 9.986833 ATTCAATAGTTTCAAACAAAGCAAAAC 57.013 25.926 2.41 0.00 0.00 2.43
231 232 9.985318 CAATTCAATAGTTTCAAACAAAGCAAA 57.015 25.926 2.41 0.00 0.00 3.68
232 233 8.610896 CCAATTCAATAGTTTCAAACAAAGCAA 58.389 29.630 2.41 0.00 0.00 3.91
233 234 7.226325 CCCAATTCAATAGTTTCAAACAAAGCA 59.774 33.333 2.41 0.00 0.00 3.91
234 235 7.440856 TCCCAATTCAATAGTTTCAAACAAAGC 59.559 33.333 2.41 0.00 0.00 3.51
235 236 8.764287 GTCCCAATTCAATAGTTTCAAACAAAG 58.236 33.333 2.41 0.00 0.00 2.77
236 237 7.713073 GGTCCCAATTCAATAGTTTCAAACAAA 59.287 33.333 2.41 0.00 0.00 2.83
237 238 7.147655 TGGTCCCAATTCAATAGTTTCAAACAA 60.148 33.333 2.41 0.00 0.00 2.83
238 239 6.325028 TGGTCCCAATTCAATAGTTTCAAACA 59.675 34.615 2.41 0.00 0.00 2.83
239 240 6.754193 TGGTCCCAATTCAATAGTTTCAAAC 58.246 36.000 0.00 0.00 0.00 2.93
240 241 6.985653 TGGTCCCAATTCAATAGTTTCAAA 57.014 33.333 0.00 0.00 0.00 2.69
241 242 7.552050 AATGGTCCCAATTCAATAGTTTCAA 57.448 32.000 0.00 0.00 0.00 2.69
242 243 7.016072 ACAAATGGTCCCAATTCAATAGTTTCA 59.984 33.333 0.00 0.00 0.00 2.69
243 244 7.386059 ACAAATGGTCCCAATTCAATAGTTTC 58.614 34.615 0.00 0.00 0.00 2.78
244 245 7.315066 ACAAATGGTCCCAATTCAATAGTTT 57.685 32.000 0.00 0.00 0.00 2.66
245 246 6.933514 ACAAATGGTCCCAATTCAATAGTT 57.066 33.333 0.00 0.00 0.00 2.24
246 247 7.838696 TGATACAAATGGTCCCAATTCAATAGT 59.161 33.333 0.00 0.00 0.00 2.12
247 248 8.137437 GTGATACAAATGGTCCCAATTCAATAG 58.863 37.037 0.00 0.00 0.00 1.73
248 249 7.617329 TGTGATACAAATGGTCCCAATTCAATA 59.383 33.333 0.00 0.00 0.00 1.90
249 250 6.440010 TGTGATACAAATGGTCCCAATTCAAT 59.560 34.615 0.00 0.00 0.00 2.57
250 251 5.777223 TGTGATACAAATGGTCCCAATTCAA 59.223 36.000 0.00 0.00 0.00 2.69
251 252 5.184864 GTGTGATACAAATGGTCCCAATTCA 59.815 40.000 0.00 0.00 0.00 2.57
252 253 5.650543 GTGTGATACAAATGGTCCCAATTC 58.349 41.667 0.00 0.00 0.00 2.17
253 254 4.157656 CGTGTGATACAAATGGTCCCAATT 59.842 41.667 0.00 0.00 0.00 2.32
254 255 3.694072 CGTGTGATACAAATGGTCCCAAT 59.306 43.478 0.00 0.00 0.00 3.16
255 256 3.078097 CGTGTGATACAAATGGTCCCAA 58.922 45.455 0.00 0.00 0.00 4.12
256 257 2.303311 TCGTGTGATACAAATGGTCCCA 59.697 45.455 0.00 0.00 0.00 4.37
257 258 2.980568 TCGTGTGATACAAATGGTCCC 58.019 47.619 0.00 0.00 0.00 4.46
258 259 3.245284 CGATCGTGTGATACAAATGGTCC 59.755 47.826 7.03 0.00 34.09 4.46
259 260 4.026804 GTCGATCGTGTGATACAAATGGTC 60.027 45.833 15.94 0.00 34.09 4.02
260 261 3.863424 GTCGATCGTGTGATACAAATGGT 59.137 43.478 15.94 0.00 34.09 3.55
261 262 3.061205 CGTCGATCGTGTGATACAAATGG 60.061 47.826 15.94 0.00 34.09 3.16
262 263 4.089549 CGTCGATCGTGTGATACAAATG 57.910 45.455 15.94 0.00 34.09 2.32
275 276 2.543476 CAATACATGCACGTCGATCG 57.457 50.000 9.36 9.36 46.00 3.69
287 288 3.712733 AGCCCCAAATTCATGCAATACAT 59.287 39.130 0.00 0.00 40.66 2.29
288 289 3.106054 AGCCCCAAATTCATGCAATACA 58.894 40.909 0.00 0.00 0.00 2.29
289 290 3.385755 AGAGCCCCAAATTCATGCAATAC 59.614 43.478 0.00 0.00 0.00 1.89
290 291 3.385433 CAGAGCCCCAAATTCATGCAATA 59.615 43.478 0.00 0.00 0.00 1.90
291 292 2.169769 CAGAGCCCCAAATTCATGCAAT 59.830 45.455 0.00 0.00 0.00 3.56
292 293 1.551430 CAGAGCCCCAAATTCATGCAA 59.449 47.619 0.00 0.00 0.00 4.08
293 294 1.187974 CAGAGCCCCAAATTCATGCA 58.812 50.000 0.00 0.00 0.00 3.96
294 295 0.179092 GCAGAGCCCCAAATTCATGC 60.179 55.000 0.00 0.00 0.00 4.06
295 296 1.187974 TGCAGAGCCCCAAATTCATG 58.812 50.000 0.00 0.00 0.00 3.07
296 297 2.170012 ATGCAGAGCCCCAAATTCAT 57.830 45.000 0.00 0.00 0.00 2.57
297 298 1.941377 AATGCAGAGCCCCAAATTCA 58.059 45.000 0.00 0.00 0.00 2.57
298 299 2.234414 TCAAATGCAGAGCCCCAAATTC 59.766 45.455 0.00 0.00 0.00 2.17
299 300 2.235402 CTCAAATGCAGAGCCCCAAATT 59.765 45.455 0.00 0.00 0.00 1.82
300 301 1.829222 CTCAAATGCAGAGCCCCAAAT 59.171 47.619 0.00 0.00 0.00 2.32
301 302 1.259609 CTCAAATGCAGAGCCCCAAA 58.740 50.000 0.00 0.00 0.00 3.28
302 303 0.612732 CCTCAAATGCAGAGCCCCAA 60.613 55.000 0.00 0.00 0.00 4.12
303 304 1.000521 CCTCAAATGCAGAGCCCCA 60.001 57.895 0.00 0.00 0.00 4.96
304 305 1.000396 ACCTCAAATGCAGAGCCCC 60.000 57.895 0.00 0.00 0.00 5.80
305 306 0.610232 ACACCTCAAATGCAGAGCCC 60.610 55.000 0.00 0.00 0.00 5.19
306 307 0.524862 CACACCTCAAATGCAGAGCC 59.475 55.000 0.00 0.00 0.00 4.70
307 308 1.068748 CACACACCTCAAATGCAGAGC 60.069 52.381 0.00 0.00 0.00 4.09
308 309 2.497138 TCACACACCTCAAATGCAGAG 58.503 47.619 0.00 0.00 0.00 3.35
309 310 2.636647 TCACACACCTCAAATGCAGA 57.363 45.000 0.00 0.00 0.00 4.26
310 311 3.005050 ACATTCACACACCTCAAATGCAG 59.995 43.478 0.00 0.00 31.96 4.41
311 312 2.957680 ACATTCACACACCTCAAATGCA 59.042 40.909 0.00 0.00 31.96 3.96
312 313 3.311106 CACATTCACACACCTCAAATGC 58.689 45.455 0.00 0.00 31.96 3.56
313 314 3.311106 GCACATTCACACACCTCAAATG 58.689 45.455 0.00 0.00 34.34 2.32
314 315 2.030893 CGCACATTCACACACCTCAAAT 60.031 45.455 0.00 0.00 0.00 2.32
315 316 1.333308 CGCACATTCACACACCTCAAA 59.667 47.619 0.00 0.00 0.00 2.69
316 317 0.943673 CGCACATTCACACACCTCAA 59.056 50.000 0.00 0.00 0.00 3.02
317 318 0.179059 ACGCACATTCACACACCTCA 60.179 50.000 0.00 0.00 0.00 3.86
318 319 0.512952 GACGCACATTCACACACCTC 59.487 55.000 0.00 0.00 0.00 3.85
319 320 0.884704 GGACGCACATTCACACACCT 60.885 55.000 0.00 0.00 0.00 4.00
320 321 1.163420 TGGACGCACATTCACACACC 61.163 55.000 0.00 0.00 0.00 4.16
321 322 0.874390 ATGGACGCACATTCACACAC 59.126 50.000 0.00 0.00 0.00 3.82
322 323 2.464157 TATGGACGCACATTCACACA 57.536 45.000 0.00 0.00 32.39 3.72
323 324 2.935849 TCATATGGACGCACATTCACAC 59.064 45.455 2.13 0.00 32.39 3.82
324 325 3.197265 CTCATATGGACGCACATTCACA 58.803 45.455 2.13 0.00 32.39 3.58
325 326 2.545526 CCTCATATGGACGCACATTCAC 59.454 50.000 2.13 0.00 32.39 3.18
326 327 2.485302 CCCTCATATGGACGCACATTCA 60.485 50.000 2.13 0.00 32.39 2.57
327 328 2.146342 CCCTCATATGGACGCACATTC 58.854 52.381 2.13 0.00 32.39 2.67
328 329 1.202806 CCCCTCATATGGACGCACATT 60.203 52.381 2.13 0.00 32.39 2.71
329 330 0.397941 CCCCTCATATGGACGCACAT 59.602 55.000 2.13 0.00 34.90 3.21
330 331 1.829456 CCCCTCATATGGACGCACA 59.171 57.895 2.13 0.00 0.00 4.57
331 332 1.598130 GCCCCTCATATGGACGCAC 60.598 63.158 2.13 0.00 0.00 5.34
332 333 2.818169 GGCCCCTCATATGGACGCA 61.818 63.158 2.13 0.00 0.00 5.24
333 334 2.032681 GGCCCCTCATATGGACGC 59.967 66.667 2.13 0.00 0.00 5.19
335 336 2.032681 GCGGCCCCTCATATGGAC 59.967 66.667 2.13 0.00 0.00 4.02
336 337 3.249189 GGCGGCCCCTCATATGGA 61.249 66.667 8.12 0.00 0.00 3.41
337 338 3.557903 CTGGCGGCCCCTCATATGG 62.558 68.421 17.97 0.00 0.00 2.74
338 339 2.033141 CTGGCGGCCCCTCATATG 59.967 66.667 17.97 0.00 0.00 1.78
339 340 3.252284 CCTGGCGGCCCCTCATAT 61.252 66.667 17.97 0.00 0.00 1.78
373 374 2.502692 GATCCCTATACGCCACGGGC 62.503 65.000 4.96 4.96 46.75 6.13
374 375 1.590147 GATCCCTATACGCCACGGG 59.410 63.158 0.00 0.00 38.07 5.28
375 376 1.590147 GGATCCCTATACGCCACGG 59.410 63.158 0.00 0.00 0.00 4.94
376 377 1.211969 CGGATCCCTATACGCCACG 59.788 63.158 6.06 0.00 31.38 4.94
377 378 0.896940 TCCGGATCCCTATACGCCAC 60.897 60.000 6.06 0.00 38.18 5.01
378 379 0.040646 ATCCGGATCCCTATACGCCA 59.959 55.000 12.38 0.00 38.18 5.69
379 380 1.192428 AATCCGGATCCCTATACGCC 58.808 55.000 19.43 0.00 38.18 5.68
380 381 2.618053 CAAATCCGGATCCCTATACGC 58.382 52.381 19.43 0.00 38.18 4.42
381 382 2.233922 AGCAAATCCGGATCCCTATACG 59.766 50.000 19.43 1.47 39.30 3.06
382 383 3.983044 AGCAAATCCGGATCCCTATAC 57.017 47.619 19.43 3.52 0.00 1.47
383 384 5.091552 ACTAAGCAAATCCGGATCCCTATA 58.908 41.667 19.43 8.09 0.00 1.31
384 385 3.910627 ACTAAGCAAATCCGGATCCCTAT 59.089 43.478 19.43 7.30 0.00 2.57
385 386 3.314693 ACTAAGCAAATCCGGATCCCTA 58.685 45.455 19.43 4.63 0.00 3.53
386 387 2.104963 GACTAAGCAAATCCGGATCCCT 59.895 50.000 19.43 11.33 0.00 4.20
387 388 2.495084 GACTAAGCAAATCCGGATCCC 58.505 52.381 19.43 9.07 0.00 3.85
388 389 2.495084 GGACTAAGCAAATCCGGATCC 58.505 52.381 19.43 8.42 0.00 3.36
394 395 2.433436 ACAACCGGACTAAGCAAATCC 58.567 47.619 9.46 0.00 0.00 3.01
395 396 4.501071 TCTACAACCGGACTAAGCAAATC 58.499 43.478 9.46 0.00 0.00 2.17
396 397 4.546829 TCTACAACCGGACTAAGCAAAT 57.453 40.909 9.46 0.00 0.00 2.32
397 398 4.250464 CATCTACAACCGGACTAAGCAAA 58.750 43.478 9.46 0.00 0.00 3.68
398 399 3.857052 CATCTACAACCGGACTAAGCAA 58.143 45.455 9.46 0.00 0.00 3.91
399 400 2.418197 GCATCTACAACCGGACTAAGCA 60.418 50.000 9.46 0.00 0.00 3.91
400 401 2.159085 AGCATCTACAACCGGACTAAGC 60.159 50.000 9.46 1.25 0.00 3.09
401 402 3.707793 GAGCATCTACAACCGGACTAAG 58.292 50.000 9.46 0.00 0.00 2.18
402 403 3.795623 GAGCATCTACAACCGGACTAA 57.204 47.619 9.46 0.00 0.00 2.24
416 417 4.096984 CCCATGTTTTGTCCTAAGAGCATC 59.903 45.833 0.00 0.00 0.00 3.91
417 418 4.019174 CCCATGTTTTGTCCTAAGAGCAT 58.981 43.478 0.00 0.00 0.00 3.79
418 419 3.073798 TCCCATGTTTTGTCCTAAGAGCA 59.926 43.478 0.00 0.00 0.00 4.26
419 420 3.686016 TCCCATGTTTTGTCCTAAGAGC 58.314 45.455 0.00 0.00 0.00 4.09
420 421 4.641989 CCATCCCATGTTTTGTCCTAAGAG 59.358 45.833 0.00 0.00 0.00 2.85
421 422 4.599041 CCATCCCATGTTTTGTCCTAAGA 58.401 43.478 0.00 0.00 0.00 2.10
422 423 3.131046 GCCATCCCATGTTTTGTCCTAAG 59.869 47.826 0.00 0.00 0.00 2.18
423 424 3.096092 GCCATCCCATGTTTTGTCCTAA 58.904 45.455 0.00 0.00 0.00 2.69
424 425 2.042297 TGCCATCCCATGTTTTGTCCTA 59.958 45.455 0.00 0.00 0.00 2.94
425 426 1.203162 TGCCATCCCATGTTTTGTCCT 60.203 47.619 0.00 0.00 0.00 3.85
426 427 1.205417 CTGCCATCCCATGTTTTGTCC 59.795 52.381 0.00 0.00 0.00 4.02
427 428 1.895131 ACTGCCATCCCATGTTTTGTC 59.105 47.619 0.00 0.00 0.00 3.18
428 429 1.895131 GACTGCCATCCCATGTTTTGT 59.105 47.619 0.00 0.00 0.00 2.83
429 430 1.205417 GGACTGCCATCCCATGTTTTG 59.795 52.381 0.00 0.00 31.94 2.44
430 431 1.203162 TGGACTGCCATCCCATGTTTT 60.203 47.619 1.08 0.00 39.92 2.43
431 432 0.409092 TGGACTGCCATCCCATGTTT 59.591 50.000 1.08 0.00 39.92 2.83
432 433 2.086363 TGGACTGCCATCCCATGTT 58.914 52.632 1.08 0.00 39.92 2.71
433 434 3.839589 TGGACTGCCATCCCATGT 58.160 55.556 1.08 0.00 39.92 3.21
441 442 1.144708 TCCAAATTCAGTGGACTGCCA 59.855 47.619 1.63 0.00 40.33 4.92
442 443 1.815003 CTCCAAATTCAGTGGACTGCC 59.185 52.381 1.63 0.00 40.33 4.85
443 444 2.508526 ACTCCAAATTCAGTGGACTGC 58.491 47.619 1.63 0.00 40.33 4.40
444 445 5.180117 CACTAACTCCAAATTCAGTGGACTG 59.820 44.000 0.00 0.00 40.33 3.51
445 446 5.071788 TCACTAACTCCAAATTCAGTGGACT 59.928 40.000 0.00 0.00 40.33 3.85
446 447 5.305585 TCACTAACTCCAAATTCAGTGGAC 58.694 41.667 0.00 0.00 40.33 4.02
447 448 5.560722 TCACTAACTCCAAATTCAGTGGA 57.439 39.130 0.00 0.00 43.03 4.02
448 449 5.355350 GGATCACTAACTCCAAATTCAGTGG 59.645 44.000 0.00 0.00 35.29 4.00
449 450 5.063944 CGGATCACTAACTCCAAATTCAGTG 59.936 44.000 0.00 0.00 35.76 3.66
450 451 5.178797 CGGATCACTAACTCCAAATTCAGT 58.821 41.667 0.00 0.00 0.00 3.41
451 452 4.034510 GCGGATCACTAACTCCAAATTCAG 59.965 45.833 0.00 0.00 0.00 3.02
452 453 3.938963 GCGGATCACTAACTCCAAATTCA 59.061 43.478 0.00 0.00 0.00 2.57
453 454 3.312697 GGCGGATCACTAACTCCAAATTC 59.687 47.826 0.00 0.00 0.00 2.17
454 455 3.279434 GGCGGATCACTAACTCCAAATT 58.721 45.455 0.00 0.00 0.00 1.82
455 456 2.238646 TGGCGGATCACTAACTCCAAAT 59.761 45.455 0.00 0.00 0.00 2.32
456 457 1.626321 TGGCGGATCACTAACTCCAAA 59.374 47.619 0.00 0.00 0.00 3.28
457 458 1.207089 CTGGCGGATCACTAACTCCAA 59.793 52.381 0.00 0.00 0.00 3.53
458 459 0.824109 CTGGCGGATCACTAACTCCA 59.176 55.000 0.00 0.00 0.00 3.86
459 460 1.112113 TCTGGCGGATCACTAACTCC 58.888 55.000 0.00 0.00 0.00 3.85
460 461 2.961526 TTCTGGCGGATCACTAACTC 57.038 50.000 0.00 0.00 0.00 3.01
461 462 3.695830 TTTTCTGGCGGATCACTAACT 57.304 42.857 0.00 0.00 0.00 2.24
462 463 3.751698 AGTTTTTCTGGCGGATCACTAAC 59.248 43.478 0.00 0.00 0.00 2.34
463 464 4.015872 AGTTTTTCTGGCGGATCACTAA 57.984 40.909 0.00 0.00 0.00 2.24
464 465 3.695830 AGTTTTTCTGGCGGATCACTA 57.304 42.857 0.00 0.00 0.00 2.74
465 466 2.568623 AGTTTTTCTGGCGGATCACT 57.431 45.000 0.00 0.00 0.00 3.41
466 467 2.418976 GGTAGTTTTTCTGGCGGATCAC 59.581 50.000 0.00 0.00 0.00 3.06
467 468 2.039216 TGGTAGTTTTTCTGGCGGATCA 59.961 45.455 0.00 0.00 0.00 2.92
468 469 2.706890 TGGTAGTTTTTCTGGCGGATC 58.293 47.619 0.00 0.00 0.00 3.36
469 470 2.871096 TGGTAGTTTTTCTGGCGGAT 57.129 45.000 0.00 0.00 0.00 4.18
470 471 2.817258 CAATGGTAGTTTTTCTGGCGGA 59.183 45.455 0.00 0.00 0.00 5.54
471 472 2.556622 ACAATGGTAGTTTTTCTGGCGG 59.443 45.455 0.00 0.00 0.00 6.13
472 473 3.915437 ACAATGGTAGTTTTTCTGGCG 57.085 42.857 0.00 0.00 0.00 5.69
521 522 9.284594 CGTTTCAAGTTTTCAACTGAGATAAAA 57.715 29.630 0.00 0.00 41.91 1.52
522 523 7.913297 CCGTTTCAAGTTTTCAACTGAGATAAA 59.087 33.333 0.00 0.00 41.91 1.40
523 524 7.066525 ACCGTTTCAAGTTTTCAACTGAGATAA 59.933 33.333 0.00 0.00 41.91 1.75
524 525 6.540914 ACCGTTTCAAGTTTTCAACTGAGATA 59.459 34.615 0.00 0.00 41.91 1.98
525 526 5.357032 ACCGTTTCAAGTTTTCAACTGAGAT 59.643 36.000 0.00 0.00 41.91 2.75
526 527 4.698304 ACCGTTTCAAGTTTTCAACTGAGA 59.302 37.500 0.00 0.00 41.91 3.27
527 528 4.981794 ACCGTTTCAAGTTTTCAACTGAG 58.018 39.130 0.00 0.00 41.91 3.35
528 529 4.698304 AGACCGTTTCAAGTTTTCAACTGA 59.302 37.500 0.00 0.00 41.91 3.41
529 530 4.981794 AGACCGTTTCAAGTTTTCAACTG 58.018 39.130 0.00 0.00 41.91 3.16
530 531 5.638596 AAGACCGTTTCAAGTTTTCAACT 57.361 34.783 0.00 0.00 45.46 3.16
531 532 6.033513 CAGAAAGACCGTTTCAAGTTTTCAAC 59.966 38.462 0.68 0.00 0.00 3.18
532 533 6.072397 TCAGAAAGACCGTTTCAAGTTTTCAA 60.072 34.615 0.68 0.00 0.00 2.69
533 534 5.413213 TCAGAAAGACCGTTTCAAGTTTTCA 59.587 36.000 0.68 0.00 0.00 2.69
534 535 5.875930 TCAGAAAGACCGTTTCAAGTTTTC 58.124 37.500 0.68 0.00 0.00 2.29
535 536 5.890424 TCAGAAAGACCGTTTCAAGTTTT 57.110 34.783 0.68 0.00 0.00 2.43
536 537 5.890424 TTCAGAAAGACCGTTTCAAGTTT 57.110 34.783 0.68 0.00 0.00 2.66
537 538 5.890424 TTTCAGAAAGACCGTTTCAAGTT 57.110 34.783 0.00 0.00 0.00 2.66
538 539 5.890424 TTTTCAGAAAGACCGTTTCAAGT 57.110 34.783 0.00 0.00 0.00 3.16
539 540 7.755582 AAATTTTCAGAAAGACCGTTTCAAG 57.244 32.000 0.00 0.00 0.00 3.02
540 541 7.815068 TCAAAATTTTCAGAAAGACCGTTTCAA 59.185 29.630 0.00 0.00 0.00 2.69
541 542 7.274686 GTCAAAATTTTCAGAAAGACCGTTTCA 59.725 33.333 0.00 0.00 0.00 2.69
542 543 7.488150 AGTCAAAATTTTCAGAAAGACCGTTTC 59.512 33.333 0.00 0.00 0.00 2.78
543 544 7.275560 CAGTCAAAATTTTCAGAAAGACCGTTT 59.724 33.333 0.00 0.00 0.00 3.60
544 545 6.751888 CAGTCAAAATTTTCAGAAAGACCGTT 59.248 34.615 0.00 0.00 0.00 4.44
545 546 6.265577 CAGTCAAAATTTTCAGAAAGACCGT 58.734 36.000 0.00 0.00 0.00 4.83
546 547 5.173854 GCAGTCAAAATTTTCAGAAAGACCG 59.826 40.000 0.00 0.00 0.00 4.79
547 548 5.173854 CGCAGTCAAAATTTTCAGAAAGACC 59.826 40.000 0.00 0.00 0.00 3.85
548 549 5.331830 GCGCAGTCAAAATTTTCAGAAAGAC 60.332 40.000 0.30 4.74 0.00 3.01
549 550 4.739716 GCGCAGTCAAAATTTTCAGAAAGA 59.260 37.500 0.30 0.00 0.00 2.52
550 551 4.374309 CGCGCAGTCAAAATTTTCAGAAAG 60.374 41.667 8.75 0.00 0.00 2.62
551 552 3.485378 CGCGCAGTCAAAATTTTCAGAAA 59.515 39.130 8.75 0.00 0.00 2.52
552 553 3.042189 CGCGCAGTCAAAATTTTCAGAA 58.958 40.909 8.75 0.00 0.00 3.02
553 554 2.649516 CGCGCAGTCAAAATTTTCAGA 58.350 42.857 8.75 0.00 0.00 3.27
554 555 1.123038 GCGCGCAGTCAAAATTTTCAG 59.877 47.619 29.10 0.00 0.00 3.02
555 556 1.127701 GCGCGCAGTCAAAATTTTCA 58.872 45.000 29.10 0.00 0.00 2.69
556 557 1.408422 AGCGCGCAGTCAAAATTTTC 58.592 45.000 35.10 0.00 0.00 2.29
557 558 1.851658 AAGCGCGCAGTCAAAATTTT 58.148 40.000 35.10 11.75 0.00 1.82
558 559 1.851658 AAAGCGCGCAGTCAAAATTT 58.148 40.000 35.10 18.93 0.00 1.82
559 560 1.851658 AAAAGCGCGCAGTCAAAATT 58.148 40.000 35.10 13.41 0.00 1.82
560 561 1.851658 AAAAAGCGCGCAGTCAAAAT 58.148 40.000 35.10 6.63 0.00 1.82
561 562 3.337398 AAAAAGCGCGCAGTCAAAA 57.663 42.105 35.10 0.00 0.00 2.44
580 581 5.885881 ACACGCAGTCAAATTGTCTAAAAA 58.114 33.333 0.00 0.00 41.61 1.94
581 582 5.493133 ACACGCAGTCAAATTGTCTAAAA 57.507 34.783 0.00 0.00 41.61 1.52
582 583 5.163703 ACAACACGCAGTCAAATTGTCTAAA 60.164 36.000 0.00 0.00 41.61 1.85
583 584 4.334203 ACAACACGCAGTCAAATTGTCTAA 59.666 37.500 0.00 0.00 41.61 2.10
584 585 3.874543 ACAACACGCAGTCAAATTGTCTA 59.125 39.130 0.00 0.00 41.61 2.59
585 586 2.682856 ACAACACGCAGTCAAATTGTCT 59.317 40.909 0.00 0.00 41.61 3.41
586 587 2.783284 CACAACACGCAGTCAAATTGTC 59.217 45.455 0.00 0.00 41.61 3.18
587 588 2.163412 ACACAACACGCAGTCAAATTGT 59.837 40.909 0.00 0.00 41.61 2.71
588 589 2.796304 ACACAACACGCAGTCAAATTG 58.204 42.857 0.00 0.00 41.61 2.32
589 590 3.178267 CAACACAACACGCAGTCAAATT 58.822 40.909 0.00 0.00 41.61 1.82
590 591 2.796304 CAACACAACACGCAGTCAAAT 58.204 42.857 0.00 0.00 41.61 2.32
591 592 1.730772 GCAACACAACACGCAGTCAAA 60.731 47.619 0.00 0.00 41.61 2.69
592 593 0.179176 GCAACACAACACGCAGTCAA 60.179 50.000 0.00 0.00 41.61 3.18
593 594 1.301677 TGCAACACAACACGCAGTCA 61.302 50.000 0.00 0.00 41.61 3.41
594 595 0.029300 ATGCAACACAACACGCAGTC 59.971 50.000 0.00 0.00 41.61 3.51
596 597 0.847670 CAATGCAACACAACACGCAG 59.152 50.000 0.00 0.00 37.88 5.18
597 598 1.144565 GCAATGCAACACAACACGCA 61.145 50.000 0.00 0.00 39.01 5.24
598 599 0.871163 AGCAATGCAACACAACACGC 60.871 50.000 8.35 0.00 0.00 5.34
599 600 0.847670 CAGCAATGCAACACAACACG 59.152 50.000 8.35 0.00 0.00 4.49
600 601 0.578211 GCAGCAATGCAACACAACAC 59.422 50.000 8.35 0.00 34.41 3.32
601 602 0.175073 TGCAGCAATGCAACACAACA 59.825 45.000 8.35 0.00 42.40 3.33
602 603 2.974845 TGCAGCAATGCAACACAAC 58.025 47.368 8.35 0.00 42.40 3.32
630 631 3.049206 GCAGCAATGCGTTACTCAAAAA 58.951 40.909 0.00 0.00 0.00 1.94
631 632 2.033927 TGCAGCAATGCGTTACTCAAAA 59.966 40.909 0.00 0.00 37.69 2.44
632 633 1.606189 TGCAGCAATGCGTTACTCAAA 59.394 42.857 0.00 0.00 37.69 2.69
633 634 1.233919 TGCAGCAATGCGTTACTCAA 58.766 45.000 0.00 0.00 37.69 3.02
634 635 1.197492 CTTGCAGCAATGCGTTACTCA 59.803 47.619 8.67 0.00 37.69 3.41
635 636 1.464608 TCTTGCAGCAATGCGTTACTC 59.535 47.619 8.67 0.00 37.69 2.59
636 637 1.466167 CTCTTGCAGCAATGCGTTACT 59.534 47.619 8.67 0.00 37.69 2.24
637 638 1.466360 CCTCTTGCAGCAATGCGTTAC 60.466 52.381 8.67 0.00 37.69 2.50
638 639 0.804364 CCTCTTGCAGCAATGCGTTA 59.196 50.000 8.67 0.00 37.69 3.18
639 640 0.890542 TCCTCTTGCAGCAATGCGTT 60.891 50.000 8.67 0.00 37.69 4.84
640 641 0.679002 ATCCTCTTGCAGCAATGCGT 60.679 50.000 8.67 0.00 37.69 5.24
641 642 0.029035 GATCCTCTTGCAGCAATGCG 59.971 55.000 8.67 0.00 37.69 4.73
642 643 1.100510 TGATCCTCTTGCAGCAATGC 58.899 50.000 8.67 0.00 0.00 3.56
643 644 2.753452 AGTTGATCCTCTTGCAGCAATG 59.247 45.455 8.67 4.83 0.00 2.82
644 645 3.015327 GAGTTGATCCTCTTGCAGCAAT 58.985 45.455 8.67 0.00 0.00 3.56
645 646 2.430465 GAGTTGATCCTCTTGCAGCAA 58.570 47.619 7.81 7.81 0.00 3.91
646 647 1.673923 CGAGTTGATCCTCTTGCAGCA 60.674 52.381 0.00 0.00 0.00 4.41
647 648 1.005340 CGAGTTGATCCTCTTGCAGC 58.995 55.000 0.00 0.00 0.00 5.25
648 649 2.376808 ACGAGTTGATCCTCTTGCAG 57.623 50.000 0.00 0.00 0.00 4.41
649 650 2.807967 CAAACGAGTTGATCCTCTTGCA 59.192 45.455 0.00 0.00 39.87 4.08
650 651 2.413371 GCAAACGAGTTGATCCTCTTGC 60.413 50.000 7.61 8.92 39.87 4.01
651 652 3.070018 AGCAAACGAGTTGATCCTCTTG 58.930 45.455 7.61 0.00 39.87 3.02
652 653 3.409026 AGCAAACGAGTTGATCCTCTT 57.591 42.857 7.61 0.00 39.87 2.85
653 654 4.744795 ATAGCAAACGAGTTGATCCTCT 57.255 40.909 7.61 0.00 39.87 3.69
654 655 4.026475 CGAATAGCAAACGAGTTGATCCTC 60.026 45.833 7.61 0.00 39.87 3.71
655 656 3.865745 CGAATAGCAAACGAGTTGATCCT 59.134 43.478 7.61 0.00 39.87 3.24
656 657 3.863424 TCGAATAGCAAACGAGTTGATCC 59.137 43.478 7.61 0.00 39.87 3.36
657 658 5.059660 CTCGAATAGCAAACGAGTTGATC 57.940 43.478 0.00 0.00 45.23 2.92
671 672 1.369321 GGGCCTCCAGCTCGAATAG 59.631 63.158 0.84 0.00 43.05 1.73
672 673 3.550974 GGGCCTCCAGCTCGAATA 58.449 61.111 0.84 0.00 43.05 1.75
677 678 0.962855 GACTTTTGGGCCTCCAGCTC 60.963 60.000 4.53 0.00 45.04 4.09
678 679 1.075659 GACTTTTGGGCCTCCAGCT 59.924 57.895 4.53 0.00 45.04 4.24
679 680 2.335712 CGACTTTTGGGCCTCCAGC 61.336 63.158 4.53 0.00 45.04 4.85
680 681 2.335712 GCGACTTTTGGGCCTCCAG 61.336 63.158 4.53 0.00 45.04 3.86
681 682 2.282180 GCGACTTTTGGGCCTCCA 60.282 61.111 4.53 0.00 42.25 3.86
682 683 3.062466 GGCGACTTTTGGGCCTCC 61.062 66.667 4.53 0.00 43.52 4.30
683 684 2.282180 TGGCGACTTTTGGGCCTC 60.282 61.111 4.53 0.00 46.97 4.70
684 685 2.282462 CTGGCGACTTTTGGGCCT 60.282 61.111 4.53 0.00 46.97 5.19
686 687 2.982744 GCTCTGGCGACTTTTGGGC 61.983 63.158 0.00 0.00 0.00 5.36
687 688 2.335712 GGCTCTGGCGACTTTTGGG 61.336 63.158 0.00 0.00 39.81 4.12
688 689 2.335712 GGGCTCTGGCGACTTTTGG 61.336 63.158 0.00 0.00 39.81 3.28
689 690 1.580845 CTGGGCTCTGGCGACTTTTG 61.581 60.000 0.00 0.00 39.81 2.44
690 691 1.302832 CTGGGCTCTGGCGACTTTT 60.303 57.895 0.00 0.00 39.81 2.27
691 692 2.348998 CTGGGCTCTGGCGACTTT 59.651 61.111 0.00 0.00 39.81 2.66
692 693 4.400961 GCTGGGCTCTGGCGACTT 62.401 66.667 0.00 0.00 39.81 3.01
699 700 3.965539 CTTCGTGGGCTGGGCTCTG 62.966 68.421 0.00 0.00 0.00 3.35
700 701 3.710722 CTTCGTGGGCTGGGCTCT 61.711 66.667 0.00 0.00 0.00 4.09
701 702 4.785453 CCTTCGTGGGCTGGGCTC 62.785 72.222 0.00 0.00 0.00 4.70
831 843 3.827898 GACGACGAGGAGGGGCAG 61.828 72.222 0.00 0.00 0.00 4.85
892 904 1.153147 GGGCTTAAAGCGAGGGAGG 60.153 63.158 0.00 0.00 43.62 4.30
912 924 0.893727 AAGCCACGAACCACCCATTC 60.894 55.000 0.00 0.00 0.00 2.67
930 942 4.700373 TCATTATGATGCGGGGCACGAA 62.700 50.000 16.21 0.30 43.04 3.85
931 943 3.249027 TCATTATGATGCGGGGCACGA 62.249 52.381 16.21 0.00 43.04 4.35
932 944 0.884259 TCATTATGATGCGGGGCACG 60.884 55.000 3.87 3.87 43.04 5.34
933 945 0.593128 GTCATTATGATGCGGGGCAC 59.407 55.000 0.00 0.00 43.04 5.01
934 946 0.537143 GGTCATTATGATGCGGGGCA 60.537 55.000 0.00 0.00 44.86 5.36
939 951 0.792640 GCGGAGGTCATTATGATGCG 59.207 55.000 0.00 1.72 33.14 4.73
952 964 4.637489 CGGATCAGAGCGCGGAGG 62.637 72.222 8.83 0.00 0.00 4.30
971 983 2.464865 CGAAGATTAAGCTGGAGACGG 58.535 52.381 0.00 0.00 40.79 4.79
1089 1120 1.590259 GAGCTTCTCCGTGATCCGC 60.590 63.158 0.00 0.00 34.38 5.54
1114 1145 4.503314 GCGGGGGTCGTACTTCCG 62.503 72.222 0.00 0.00 43.13 4.30
1238 1278 4.352893 TCTCTCTCTCTCTCTCTCTCACA 58.647 47.826 0.00 0.00 0.00 3.58
1240 1280 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
1241 1281 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1242 1282 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1243 1283 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
1244 1284 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
1245 1285 4.646945 TGTCTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
1246 1286 4.614475 TGTCTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
1247 1287 5.304101 AGATGTCTCTCTCTCTCTCTCTCTC 59.696 48.000 0.00 0.00 0.00 3.20
1248 1288 5.070180 CAGATGTCTCTCTCTCTCTCTCTCT 59.930 48.000 0.00 0.00 0.00 3.10
1249 1289 5.163364 ACAGATGTCTCTCTCTCTCTCTCTC 60.163 48.000 0.00 0.00 0.00 3.20
1250 1290 4.718774 ACAGATGTCTCTCTCTCTCTCTCT 59.281 45.833 0.00 0.00 0.00 3.10
1251 1291 5.028549 ACAGATGTCTCTCTCTCTCTCTC 57.971 47.826 0.00 0.00 0.00 3.20
1252 1292 5.190528 AGAACAGATGTCTCTCTCTCTCTCT 59.809 44.000 0.00 0.00 0.00 3.10
1300 1340 1.819288 CCAGTCCATCGACAGTACAGT 59.181 52.381 0.00 0.00 41.87 3.55
1301 1341 1.135139 CCCAGTCCATCGACAGTACAG 59.865 57.143 0.00 0.00 41.87 2.74
1302 1342 1.182667 CCCAGTCCATCGACAGTACA 58.817 55.000 0.00 0.00 41.87 2.90
1303 1343 0.179108 GCCCAGTCCATCGACAGTAC 60.179 60.000 0.00 0.00 41.87 2.73
1304 1344 0.324368 AGCCCAGTCCATCGACAGTA 60.324 55.000 0.00 0.00 41.87 2.74
1305 1345 1.610673 AGCCCAGTCCATCGACAGT 60.611 57.895 0.00 0.00 41.87 3.55
1348 1394 0.908910 TGGATTAGCGGCAGAAAGGA 59.091 50.000 1.45 0.00 0.00 3.36
1353 1399 0.178068 GGACTTGGATTAGCGGCAGA 59.822 55.000 1.45 0.00 0.00 4.26
1404 1450 2.985847 GTGCAGCAACAGGGACCC 60.986 66.667 0.59 0.59 0.00 4.46
1429 1475 1.079490 TGTCAGGGAGGGAGAGAACAT 59.921 52.381 0.00 0.00 0.00 2.71
1837 1890 5.523588 AGAAGAGAGAGAGAGAGAGAGAGA 58.476 45.833 0.00 0.00 0.00 3.10
1858 1911 9.762933 CTCCATTTCCATTTTTAGTTTTCAAGA 57.237 29.630 0.00 0.00 0.00 3.02
1872 1927 2.827921 GTGAGCAACCTCCATTTCCATT 59.172 45.455 0.00 0.00 37.29 3.16
1873 1928 2.225091 TGTGAGCAACCTCCATTTCCAT 60.225 45.455 0.00 0.00 37.29 3.41
1899 1954 4.421058 TCATCAGTACGCTACAACATCAC 58.579 43.478 0.00 0.00 0.00 3.06
1903 1958 3.616821 GCATTCATCAGTACGCTACAACA 59.383 43.478 0.00 0.00 0.00 3.33
1958 2013 3.498777 GCAATCTCCGAATAAAGCCCTAC 59.501 47.826 0.00 0.00 0.00 3.18
1962 2017 2.291741 CCTGCAATCTCCGAATAAAGCC 59.708 50.000 0.00 0.00 0.00 4.35
1968 2023 0.835941 AGCTCCTGCAATCTCCGAAT 59.164 50.000 0.00 0.00 42.74 3.34
1978 2033 1.055849 TTTACTGACCAGCTCCTGCA 58.944 50.000 0.00 0.00 42.74 4.41
1979 2034 2.185004 TTTTACTGACCAGCTCCTGC 57.815 50.000 0.00 0.00 40.05 4.85
1980 2035 4.583871 AGAATTTTACTGACCAGCTCCTG 58.416 43.478 0.00 0.00 0.00 3.86
1982 2037 3.942115 GGAGAATTTTACTGACCAGCTCC 59.058 47.826 0.00 0.00 33.45 4.70
2019 2074 9.988815 GGAGAATTTTATCTGAATGCTAGAGTA 57.011 33.333 0.00 0.00 0.00 2.59
2020 2075 8.489489 TGGAGAATTTTATCTGAATGCTAGAGT 58.511 33.333 0.00 0.00 0.00 3.24
2023 2078 9.281371 TCATGGAGAATTTTATCTGAATGCTAG 57.719 33.333 0.00 0.00 0.00 3.42
2024 2079 9.803507 ATCATGGAGAATTTTATCTGAATGCTA 57.196 29.630 0.00 0.00 0.00 3.49
2025 2080 8.707796 ATCATGGAGAATTTTATCTGAATGCT 57.292 30.769 0.00 0.00 0.00 3.79
2069 2124 3.894759 CCCATGTTCCTCTGATCAATGT 58.105 45.455 0.00 0.00 0.00 2.71
2123 2178 2.401195 GAGAAGAACATGCGGCGC 59.599 61.111 27.44 27.44 0.00 6.53
2124 2179 1.741401 TGGAGAAGAACATGCGGCG 60.741 57.895 0.51 0.51 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.