>input_sequence_87283
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----------------------------------------------------------------------ATGGGGAAGG
CGAAGCGGGCGTCCATCTTCATCAGGCTCGTGTCGGCCGCCGGCACGGGGTTCTTCTACGTGAAGCGCAAGAACCCTCGG
CGGATCACGGAGAAGCTCGAGTTCCGGAAGTACGACCCCCGCGTCAACAAGCACGTCCTCTTCACGGAGGCCAAGATGAA
GTGA----------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G298100
ACATCTGTCACTTGCCGCAGCTCATTGGGCGCGGACAAGCAGGGGCACCGGGGGCGCCCGGGCTGCCCACGACTTGTTCG
ACGGAATGACAGAACAAGAATCGGTATGTTCTTGTTGCTCCTGTCCGACCAACTTTGCGTCCGGCGAGTGATCCAGCCAG
CCAGCGAGGCATCCATCACGCTCGAACATTGATTTTTTTTGGCATGTCCGGATTGTTGAAATATGATTTGTTTTGCTTTG
TTTGAAACTATTGAATTGGGACCATTTGTATCACACGATCGACGTGCATGTATTGCATGAATTTGGGGCTCTGCATTTGA
GGTGTGTGAATGTGCGTCCATATGAGGGGCCGCCAGGCGTTGTCCGCGGACGCGCCCGTGGCGTATAGGGATCCGGATTT
GCTTAGTCCGGTTGTAGATGCTCTTAGGACAAAACATGGGATGGCAGTCCACTGAATTTGGAGTTAGTGATCCGCCAGAA
AAACTACCATTGTATATTTATCTCATTTTTTAGCGGACCTTTTTTATCTCAGTTGAAAACTTGAAACGGTCTTTCTGAAA
ATTTTGACTGCGCGCTTTTTTTTTTAGACAATTTGACTGCGTGTTGTGTTGCATTGCTGCAAGATTTTTTTTTTTGAGTA
ACGCATTGCTGCAAGAGGATCAACTCGTTTGCTATTCGAGCTGGAGGCCCAAAAGTCGCCAGAGCCCAGCCCAC-GAAGG
TATAGCCTCCCC---------CTCCGCACACCGCACTCCCCACCACCATTTCCTGCTTCTTCGCTAGAACCCTAGCCGCC
GCGCCGCCCCAAGAACCGGG-AAAGGGAAGCGACGGTCCGGTCTGCCCCTCCTCGTCGTCGAATCCCGCCGCCACCTCGT
AAGCCGCTCCTCTCTCCCGATCTCCTCCCTCGCTTTAAGCCCAGAATGGGTGGTTCGTGGCTTCGTGCCCCGCATCATAA
TGACCTCCGCGCTCTGATCCGACCGTCTCCAGCTTAATCTTCGCCGG-------------------CGGGATGGGGAAGG
CGAAGCGGGCGTCCATCTTCATCAGGCTCGTGTCGGCCGCCGGCACGGGGTTCTTCTACGTGAAGCGCAAGAACCCTCGG
CGGATCACGGAGAAGCTCGAGTTCCGGAAGTACGACCCCCGCGTCAACAAGCACGTCCTCTTCACGGAGGCCAAGATGAA
GTGAGCGCGCGC---------GGTCTTCGCCGGAAGATGGAATAACGCCGTCGAGCCCTGTAACGAACCTGAGAGAGTGT
GAGAGAGAGAGAGAGAGAGAGAGAGACATCTGTTCTTGTTCGTTGTTATTTTTTCCTTGACTGTACTG------TCGATG
GACTGGGCTGCGGCGCGGTGCAGCTCATCTGTTTCCTTTCTGCCGCTAATCCAAGTCCGTTGCATCCCCATCCATGAAGC
TCCTGGTCCGGGTCCCTGTTGCTGCACTGTTGCTATGTTCTCTCC-------CTCCCTGACATCGTCTAGACAGATTTGA
CATTTCGCCTGTCTGTGTAACATCTTTCTTGGTCCAACCGAACGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTCTCTCTCTCTCTCTCTTCTTGAAAAC
T--AAAAATGGAAATGGAGGTTGCTCACATGATGTGATGTTGTAGCGTACTGATGAATGCGTGCAGCACCTTCATACAAA
TTTCGTGTGATGGTAGGGCTTTATTCGGAGATTGCAGGAGCTGGTCAGTAAAATTCTCCATGTTAGTAGGATATACTCTA
GCATTCAGATAAAATTCTCCATGATTAGATGAATTTTGTAAATACATTGATCAGAGGAACATGGGCGAGTGGACAACAGG
ACGGTGCAATCTCAGGGGCGCCGCATGTTCTTCTCCACCTAATTCTAGTGGCAGTATACGGCTAAGCA
>chr3A_703
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--------------------------------------------------------------AGCCCAGCCCACGGAAGG
TATAGCCTCCCC---------GTCCGCACACCGCACTCCCCACCACCATTTCCTGCTTCTCCGCTAGAACCCTAGCCGCC
GCGCCGCCCCAAGAACCGGG-AAAGGGAAGCGACGATCCGGTGTGCCCCTCCTCGTCCTCGAATC---CCGCCACCTCGT
AAGCCGCTCCTCTCTCCCGATCTTCTCCCTCGCTTTAATCCCAAAATGGGAGGTTCCTG-------GCCCTGCATCACAA
TGATCTCCGCGCTCTGATCAG-TCGTCTCCAGCTTTATCTTCGCCGGGGCAAGGAGGAAATCTCGTC-GGATGGGGAAGG
CGAAGCGGGCGTCCATCTTCATCAGGCTCGTGTCGGCCGCCGGCACGGGGTTCTTCTACGTGAAGCGCAAGAACCCTCGC
CGGATCACGGAGAAGCTCGAGTTCAGGAAGTACGACCCCCGCGTCAACAAGCACGTCCTCTTCACGGAGGCCAAGATGAA
GTGAGCGCGCGC---------G-TCTTCGCCGGAAGATGGAATAACGCCGTCGAGCCCTGTAACGAACCT----------
------------GAGAGAGAGAGAGACATCTGTTCTTGTTCCTTGTTATTTTTTCCTTG------CCTGTACTATCGATG
GACTGAGCTGCGGCGCGGTGCAGCTCATCTGTT-CCTTCTTGCCGCTAATCCAAGTCCGTTGCATCCCCATCCATGAAGC
TGCTGGTCCAGGTCCCTGTTGCTGCACTGTTGCTGTGTTATCTCC-------CTCCCTGACATCATTTCGACAGATTTGA
CATTTCGCCTGTCTGTGTAACATCTTTCTTGGTCCAACTGAACGTCAGTGACTATTTGGCATTTGTGATCTCTCTCTCTC
TCTC----------------------------------------------------------------------------
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-----------------------------------------------TCCCTCTCTCTCTCTCTCTCTCTCCTTGAAAAC
T--AAA--TGGAGATGGAGGTTGATCACATGATTTGAGGTTGTAGCGTACTGATCAATGCGTGCAGCACCTTAATACAAA
TTTTGTGTGATGCTAGTGCTTTGTTCGGAGATCATATGAGCTGGTCAGTAAAATTCTCCATG------------------
-----------------------ATTAGATGAATTTTGTAAATTCATTGATCAGAGGAACATGGGCGAGTGGACAGCAGG
ACGGTGCAGGCTCAGGG--GCCGCATGTTCTTCTCCACCTAATTCTAGTGGCAGCATATGACTAAGCA
>chr3B_703
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--------------------------------------------------------------AGCCCAGCCCACGGAAGG
TATAGCCTCCCCCGTAGTCCCGTACGCACACCGCATTCCCCA--ACCATTTCCTGCTTCTTCGCTAGAACCCTAGCCGCC
GTGCCGCCCCAAGAACCGGAAAAAGGGAAGCGACAATCCGGCGTGCCCTTCCTCGTCGTTGAATC---CCGCCACCTCGT
AAGCCGCTCCTCTCTCCCGATCTTCTCCCTCGCTTTAATCCCAAAATTGGTGGTTCGT--------GCCCTGCATCACAA
TGATATCCGCGCTCTGATCCGATCGTCTCCAGCTTTATCTTCGCCGGGGCAAGGAGGAAATCTCGTCGGGATGGGGAAGG
CGAAGCGGGCGTCCATCTTCATCAGGCTCGTGTCGGCCGCTGGCACGGGGTTCTTCTACGTGAAGCGCAAGAACCCTCGC
CGGATCACGGAGAAGCTCGAGTTCAGGAAGTACGACCCCCGCGTCAACAAGCACGTCCTCTTCACGGAGGCCAAGATGAA
GTGAGCGCGCGCGCGCGCGCGG-TCTTCGCCGGAAGATGCAATAACGCCGTCGAGCCCTGTTACGAACCTGAGAGAGAGA
A------------------AGAGAGACATCTGTTCTTGTTCGTTGTTTTTTTTTCCTTG------CTG------TCGATG
GACTGGGCTGCGGCGCGGTGCAGCTCATCTGTT-CCTTCCTGCCGCTAATCCAAGTCCGTT-CATCCCCATCCATGAAGC
TCCTGGCCCAGGCCCCTGTTGCTGTACTGTTTCTGTGTTCTCTCTCTAGTCTCTCCCTGACATCGTCTAGACAGATTTGA
CATTTCGCCTGTCTGTGTAACATCTTTCCTGGTCCAACCGAACGTCAGTGAACTGATGGAAA------------------
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------------------------------------------------------------------CTCTCTCTGAAAAC
TCAAAA--TGGAAATGGAGGTAGGTAACATGATTTGAGGCTGTAGCGGACTGATGAATGCGTGCGGCACCTTCATACAAA
TTCCGAGTGATGCTAGTGCTTTGTTCGGAGATCATATGAGCTGCTCAGTAGAATTCTCCATGTTAGTAGGTTACTCTACC
AT------------------------------------------------TCAGAGGAACATGGGCGAGTGGACAACAAG
ACGGTGCAGGCTCGGGG--GTCGCA---TCTTCTCCACCTAATTCTAGTGGCAGCATGCGGCTATGCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
---------------------S----------------------------------------------------------
-----------------------------------S------S----------------------SSS------------
-----------------------S--------------S----S---------------SSSSSSS----S------S--
---S------------------S------------S--------------------------------------------
-------------------------------------------------------------------------------S
------------------------S-------------------------------------------------------
----------------------S------------------------------------------------------S-S
SSSSSSSSSSSS-----------------------------------------------SSSSSS---------------
---------------------------------S----S-----------------------------------------
---------S------------------------S---------------------------------------------
-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------------------S---------
------SS---------------S---------S---S------------------------------------------
------------S---S-----S---------SSS-S---------------------------------S--SS--SSS
SSSSSSSSSSSSSSSSSSSSSSS--------------------S------------------------------------
--------SS-------SS-----------------------------------S-------------
>forward_614
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----------------------------------GACTGCGTGTTGTGTTGCAT--------------------------
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>reverse_2023
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----------------------ATTCGGAGATTGCAGGAGCT--------------------------------------
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