Multiple sequence alignment - TraesCS3D01G296900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G296900 chr3D 100.000 4515 0 0 1 4515 410662536 410667050 0.000000e+00 8338.0
1 TraesCS3D01G296900 chr3D 83.186 113 14 5 1453 1562 328521443 328521553 1.030000e-16 99.0
2 TraesCS3D01G296900 chr3B 94.241 1719 80 8 2174 3888 536984972 536986675 0.000000e+00 2608.0
3 TraesCS3D01G296900 chr3B 90.757 1493 84 18 638 2092 536983499 536984975 0.000000e+00 1943.0
4 TraesCS3D01G296900 chr3B 98.009 452 6 1 4064 4515 536986668 536987116 0.000000e+00 782.0
5 TraesCS3D01G296900 chr3B 86.819 569 55 10 1 564 536982582 536983135 6.420000e-173 617.0
6 TraesCS3D01G296900 chr3B 100.000 32 0 0 1535 1566 245509908 245509877 4.880000e-05 60.2
7 TraesCS3D01G296900 chr3A 92.762 1575 78 10 1876 3433 540970962 540969407 0.000000e+00 2244.0
8 TraesCS3D01G296900 chr3A 90.666 1232 73 16 674 1891 540972182 540970979 0.000000e+00 1600.0
9 TraesCS3D01G296900 chr3A 95.806 453 14 3 4064 4515 540968629 540968181 0.000000e+00 726.0
10 TraesCS3D01G296900 chr3A 86.690 571 57 11 1 561 540997112 540996551 2.310000e-172 616.0
11 TraesCS3D01G296900 chr3A 92.837 363 23 2 3419 3781 540969390 540969031 1.440000e-144 523.0
12 TraesCS3D01G296900 chr3A 92.045 176 14 0 3890 4065 528529485 528529310 9.700000e-62 248.0
13 TraesCS3D01G296900 chr3A 93.694 111 6 1 3778 3888 540968731 540968622 1.000000e-36 165.0
14 TraesCS3D01G296900 chr3A 92.857 70 2 2 555 621 540972368 540972299 1.030000e-16 99.0
15 TraesCS3D01G296900 chr6D 90.503 179 15 2 3886 4063 79078264 79078087 7.550000e-58 235.0
16 TraesCS3D01G296900 chr6D 88.202 178 20 1 3886 4063 459265684 459265860 1.270000e-50 211.0
17 TraesCS3D01G296900 chr5A 90.286 175 16 1 3889 4063 401760920 401760747 1.260000e-55 228.0
18 TraesCS3D01G296900 chr2A 89.444 180 16 2 3884 4063 569587173 569586997 1.630000e-54 224.0
19 TraesCS3D01G296900 chr2A 92.683 41 3 0 1526 1566 4958910 4958950 4.880000e-05 60.2
20 TraesCS3D01G296900 chr4B 92.308 156 12 0 3908 4063 22850842 22850687 5.880000e-54 222.0
21 TraesCS3D01G296900 chr6A 88.701 177 19 1 3889 4065 125546414 125546239 9.840000e-52 215.0
22 TraesCS3D01G296900 chr5D 88.571 175 19 1 3889 4063 297309546 297309719 1.270000e-50 211.0
23 TraesCS3D01G296900 chr4A 89.697 165 17 0 3899 4063 590222424 590222588 1.270000e-50 211.0
24 TraesCS3D01G296900 chr4A 82.418 91 15 1 177 266 488213581 488213491 1.350000e-10 78.7
25 TraesCS3D01G296900 chr7D 80.370 270 52 1 106 374 231408459 231408728 2.130000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G296900 chr3D 410662536 410667050 4514 False 8338.000000 8338 100.000000 1 4515 1 chr3D.!!$F2 4514
1 TraesCS3D01G296900 chr3B 536982582 536987116 4534 False 1487.500000 2608 92.456500 1 4515 4 chr3B.!!$F1 4514
2 TraesCS3D01G296900 chr3A 540968181 540972368 4187 True 892.833333 2244 93.103667 555 4515 6 chr3A.!!$R3 3960
3 TraesCS3D01G296900 chr3A 540996551 540997112 561 True 616.000000 616 86.690000 1 561 1 chr3A.!!$R2 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 449 0.681733 CACCCCCTCTATGTCCATCG 59.318 60.0 0.0 0.0 0.0 3.84 F
2105 2690 0.034337 TAGTGACGTGCCCTTCCAAC 59.966 55.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2131 2716 0.036388 GGAAGTGCATTGAGGACCGA 60.036 55.0 0.0 0.0 39.79 4.69 R
3899 4834 0.388649 CGCTCACTTAGGTGCGTCTT 60.389 55.0 0.0 0.0 42.72 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.271102 AGGAGTGCTCGAGTGAGAAAC 59.729 52.381 15.13 3.66 45.57 2.78
49 50 6.909909 ACTTGTGATTTACCTCGGAAAATTC 58.090 36.000 0.00 0.00 0.00 2.17
112 119 1.672881 GGGAATCACATTCAGCCTTCG 59.327 52.381 0.00 0.00 41.03 3.79
122 129 0.955428 TCAGCCTTCGTGATGTTGGC 60.955 55.000 0.00 0.00 43.52 4.52
174 182 6.603201 TCAACATTGATTAGCTTCCCTTAAGG 59.397 38.462 15.14 15.14 32.02 2.69
213 221 5.003692 TCATCCTCATCTTCAGAGTTTCG 57.996 43.478 0.00 0.00 0.00 3.46
223 231 5.479306 TCTTCAGAGTTTCGTTTATCCCTG 58.521 41.667 0.00 0.00 0.00 4.45
230 238 1.882308 TCGTTTATCCCTGGCCCTAA 58.118 50.000 0.00 0.00 0.00 2.69
232 240 1.476291 CGTTTATCCCTGGCCCTAACC 60.476 57.143 0.00 0.00 0.00 2.85
282 290 5.483685 TGACCTTACACATGCTATATCCC 57.516 43.478 0.00 0.00 0.00 3.85
306 314 7.484641 CCCATTGTGTTTGTTTAACTCATATCG 59.515 37.037 0.00 0.00 39.29 2.92
374 382 7.531716 TGTTTAGGCCAACTTTATATTTCACG 58.468 34.615 5.01 0.00 0.00 4.35
378 386 7.690952 AGGCCAACTTTATATTTCACGTTTA 57.309 32.000 5.01 0.00 0.00 2.01
439 448 2.103153 TCACCCCCTCTATGTCCATC 57.897 55.000 0.00 0.00 0.00 3.51
440 449 0.681733 CACCCCCTCTATGTCCATCG 59.318 60.000 0.00 0.00 0.00 3.84
451 462 6.425210 TCTATGTCCATCGATCCTTTCAAT 57.575 37.500 0.00 0.00 0.00 2.57
485 496 3.628032 CCTCGTGCTCTATGAGTAGAACA 59.372 47.826 0.00 0.00 40.22 3.18
500 511 9.926158 ATGAGTAGAACATGCAATTAGATAGAG 57.074 33.333 0.00 0.00 0.00 2.43
501 512 7.869937 TGAGTAGAACATGCAATTAGATAGAGC 59.130 37.037 0.00 0.00 0.00 4.09
502 513 6.865726 AGTAGAACATGCAATTAGATAGAGCG 59.134 38.462 0.00 0.00 0.00 5.03
503 514 5.847304 AGAACATGCAATTAGATAGAGCGA 58.153 37.500 0.00 0.00 0.00 4.93
506 517 8.090831 AGAACATGCAATTAGATAGAGCGAATA 58.909 33.333 0.00 0.00 0.00 1.75
520 531 1.071699 GCGAATATTCTAGTGGCCCCA 59.928 52.381 13.45 0.00 0.00 4.96
536 547 3.135895 GGCCCCACATGTAGTAGTATTGT 59.864 47.826 0.00 0.00 0.00 2.71
778 1205 1.330521 ACAACAAACAGTACAGCAGCG 59.669 47.619 0.00 0.00 0.00 5.18
882 1313 3.506096 CACATCCGCTGCTGCCTG 61.506 66.667 10.24 7.79 35.36 4.85
1026 1472 2.068821 ATGTGCCCTCTCCATCGCT 61.069 57.895 0.00 0.00 0.00 4.93
1103 1552 1.524849 GGAATCTCCCGAAGCTGCC 60.525 63.158 0.00 0.00 0.00 4.85
1105 1554 0.813210 GAATCTCCCGAAGCTGCCAG 60.813 60.000 0.00 0.00 0.00 4.85
1130 1579 3.761752 CCCGTGGTTTCAGGTAATTCATT 59.238 43.478 0.00 0.00 0.00 2.57
1132 1581 5.160641 CCGTGGTTTCAGGTAATTCATTTG 58.839 41.667 0.00 0.00 0.00 2.32
1133 1582 5.278758 CCGTGGTTTCAGGTAATTCATTTGT 60.279 40.000 0.00 0.00 0.00 2.83
1134 1583 6.072397 CCGTGGTTTCAGGTAATTCATTTGTA 60.072 38.462 0.00 0.00 0.00 2.41
1135 1584 6.799925 CGTGGTTTCAGGTAATTCATTTGTAC 59.200 38.462 0.00 0.00 0.00 2.90
1152 1601 0.171007 TACGTAGCAACTACCGTGCC 59.829 55.000 0.00 0.00 33.79 5.01
1171 1620 1.269206 CCCCGGATGCAAAATTCATCG 60.269 52.381 0.73 0.00 40.80 3.84
1322 1771 1.677966 TTCGGTGAGTCTCCTCCCG 60.678 63.158 13.65 13.65 45.34 5.14
1334 1783 1.678627 CTCCTCCCGTCTGTCACTATG 59.321 57.143 0.00 0.00 0.00 2.23
1337 1789 3.137728 TCCTCCCGTCTGTCACTATGATA 59.862 47.826 0.00 0.00 0.00 2.15
1341 1793 5.061853 TCCCGTCTGTCACTATGATAGTAC 58.938 45.833 4.56 5.28 37.00 2.73
1358 1810 2.094752 AGTACGATGTTGCAATTTGCCC 60.095 45.455 18.27 9.63 44.23 5.36
1451 1904 1.007964 TGCATGGCAAAACGAACGG 60.008 52.632 0.00 0.00 34.76 4.44
1462 1915 3.708734 CGAACGGTTTTCGCGGCT 61.709 61.111 6.13 0.00 43.89 5.52
1463 1916 2.127383 GAACGGTTTTCGCGGCTG 60.127 61.111 6.13 2.12 43.89 4.85
1511 1964 7.979115 TTCCTTCAAACTAACGACAATTTTG 57.021 32.000 0.00 0.00 0.00 2.44
1516 1969 7.310072 TCAAACTAACGACAATTTTGACAGA 57.690 32.000 0.00 0.00 32.57 3.41
1569 2022 4.202233 TGTTTCTGAAGAAATTGCCATGCA 60.202 37.500 8.64 0.00 44.69 3.96
1572 2025 2.607635 CTGAAGAAATTGCCATGCATGC 59.392 45.455 21.69 11.82 38.76 4.06
1584 2041 3.863400 GCCATGCATGCTCTGAAGTTTTT 60.863 43.478 21.69 0.00 0.00 1.94
1606 2063 3.921021 TCACAAAAACGTTCGCAAATGTT 59.079 34.783 0.00 0.00 44.60 2.71
1835 2306 5.231265 TGATGAGATCCGCGTACATATAC 57.769 43.478 4.92 0.00 0.00 1.47
1851 2322 9.322776 CGTACATATACTTAACGGATTAGACAC 57.677 37.037 0.00 0.00 0.00 3.67
1857 2328 6.549433 ACTTAACGGATTAGACACCCATAA 57.451 37.500 0.00 0.00 0.00 1.90
2011 2514 0.869730 GCCTAAAACCAAAGCGACGA 59.130 50.000 0.00 0.00 0.00 4.20
2069 2572 3.525537 AGCGTTGATAATGACAGGACTG 58.474 45.455 0.00 0.00 0.00 3.51
2092 2677 5.717178 TGCCTTCATAGGATAGGATAGTGAC 59.283 44.000 9.02 0.00 45.05 3.67
2093 2678 5.163602 GCCTTCATAGGATAGGATAGTGACG 60.164 48.000 9.02 0.00 45.05 4.35
2094 2679 5.946972 CCTTCATAGGATAGGATAGTGACGT 59.053 44.000 0.00 0.00 45.05 4.34
2095 2680 6.127869 CCTTCATAGGATAGGATAGTGACGTG 60.128 46.154 0.00 0.00 45.05 4.49
2096 2681 4.700692 TCATAGGATAGGATAGTGACGTGC 59.299 45.833 0.00 0.00 0.00 5.34
2097 2682 2.240279 AGGATAGGATAGTGACGTGCC 58.760 52.381 0.00 0.00 0.00 5.01
2098 2683 1.272769 GGATAGGATAGTGACGTGCCC 59.727 57.143 0.00 0.00 0.00 5.36
2099 2684 2.240279 GATAGGATAGTGACGTGCCCT 58.760 52.381 0.00 0.00 0.00 5.19
2100 2685 2.154567 TAGGATAGTGACGTGCCCTT 57.845 50.000 0.00 0.00 0.00 3.95
2101 2686 0.824759 AGGATAGTGACGTGCCCTTC 59.175 55.000 0.00 0.00 0.00 3.46
2102 2687 0.179081 GGATAGTGACGTGCCCTTCC 60.179 60.000 0.00 0.00 0.00 3.46
2103 2688 0.535335 GATAGTGACGTGCCCTTCCA 59.465 55.000 0.00 0.00 0.00 3.53
2104 2689 0.981183 ATAGTGACGTGCCCTTCCAA 59.019 50.000 0.00 0.00 0.00 3.53
2105 2690 0.034337 TAGTGACGTGCCCTTCCAAC 59.966 55.000 0.00 0.00 0.00 3.77
2106 2691 1.227853 GTGACGTGCCCTTCCAACT 60.228 57.895 0.00 0.00 0.00 3.16
2107 2692 1.227823 TGACGTGCCCTTCCAACTG 60.228 57.895 0.00 0.00 0.00 3.16
2108 2693 1.227853 GACGTGCCCTTCCAACTGT 60.228 57.895 0.00 0.00 0.00 3.55
2109 2694 0.818040 GACGTGCCCTTCCAACTGTT 60.818 55.000 0.00 0.00 0.00 3.16
2110 2695 0.395173 ACGTGCCCTTCCAACTGTTT 60.395 50.000 0.00 0.00 0.00 2.83
2111 2696 0.744281 CGTGCCCTTCCAACTGTTTT 59.256 50.000 0.00 0.00 0.00 2.43
2112 2697 1.136110 CGTGCCCTTCCAACTGTTTTT 59.864 47.619 0.00 0.00 0.00 1.94
2144 2729 3.848272 TTTTGAATCGGTCCTCAATGC 57.152 42.857 0.00 0.00 31.85 3.56
2145 2730 2.488204 TTGAATCGGTCCTCAATGCA 57.512 45.000 0.00 0.00 0.00 3.96
2146 2731 1.737838 TGAATCGGTCCTCAATGCAC 58.262 50.000 0.00 0.00 0.00 4.57
2147 2732 1.278985 TGAATCGGTCCTCAATGCACT 59.721 47.619 0.00 0.00 0.00 4.40
2148 2733 2.290260 TGAATCGGTCCTCAATGCACTT 60.290 45.455 0.00 0.00 0.00 3.16
2149 2734 2.029838 ATCGGTCCTCAATGCACTTC 57.970 50.000 0.00 0.00 0.00 3.01
2150 2735 0.036388 TCGGTCCTCAATGCACTTCC 60.036 55.000 0.00 0.00 0.00 3.46
2151 2736 0.321564 CGGTCCTCAATGCACTTCCA 60.322 55.000 0.00 0.00 0.00 3.53
2152 2737 1.168714 GGTCCTCAATGCACTTCCAC 58.831 55.000 0.00 0.00 0.00 4.02
2153 2738 1.168714 GTCCTCAATGCACTTCCACC 58.831 55.000 0.00 0.00 0.00 4.61
2154 2739 0.038166 TCCTCAATGCACTTCCACCC 59.962 55.000 0.00 0.00 0.00 4.61
2155 2740 0.967380 CCTCAATGCACTTCCACCCC 60.967 60.000 0.00 0.00 0.00 4.95
2156 2741 0.038744 CTCAATGCACTTCCACCCCT 59.961 55.000 0.00 0.00 0.00 4.79
2157 2742 0.482446 TCAATGCACTTCCACCCCTT 59.518 50.000 0.00 0.00 0.00 3.95
2158 2743 1.707989 TCAATGCACTTCCACCCCTTA 59.292 47.619 0.00 0.00 0.00 2.69
2159 2744 2.311542 TCAATGCACTTCCACCCCTTAT 59.688 45.455 0.00 0.00 0.00 1.73
2160 2745 3.099141 CAATGCACTTCCACCCCTTATT 58.901 45.455 0.00 0.00 0.00 1.40
2161 2746 2.507407 TGCACTTCCACCCCTTATTC 57.493 50.000 0.00 0.00 0.00 1.75
2162 2747 1.339631 TGCACTTCCACCCCTTATTCG 60.340 52.381 0.00 0.00 0.00 3.34
2163 2748 1.065709 GCACTTCCACCCCTTATTCGA 60.066 52.381 0.00 0.00 0.00 3.71
2164 2749 2.906354 CACTTCCACCCCTTATTCGAG 58.094 52.381 0.00 0.00 0.00 4.04
2165 2750 2.500098 CACTTCCACCCCTTATTCGAGA 59.500 50.000 0.00 0.00 0.00 4.04
2166 2751 2.766828 ACTTCCACCCCTTATTCGAGAG 59.233 50.000 0.00 0.00 0.00 3.20
2167 2752 1.120530 TCCACCCCTTATTCGAGAGC 58.879 55.000 0.00 0.00 0.00 4.09
2168 2753 1.123928 CCACCCCTTATTCGAGAGCT 58.876 55.000 0.00 0.00 0.00 4.09
2169 2754 1.486726 CCACCCCTTATTCGAGAGCTT 59.513 52.381 0.00 0.00 0.00 3.74
2170 2755 2.555199 CACCCCTTATTCGAGAGCTTG 58.445 52.381 0.00 0.00 0.00 4.01
2171 2756 1.134371 ACCCCTTATTCGAGAGCTTGC 60.134 52.381 0.00 0.00 0.00 4.01
2172 2757 1.212616 CCCTTATTCGAGAGCTTGCG 58.787 55.000 3.10 3.10 0.00 4.85
2173 2758 1.212616 CCTTATTCGAGAGCTTGCGG 58.787 55.000 8.93 0.00 0.00 5.69
2174 2759 1.471676 CCTTATTCGAGAGCTTGCGGT 60.472 52.381 8.93 2.47 0.00 5.68
2175 2760 1.590238 CTTATTCGAGAGCTTGCGGTG 59.410 52.381 8.93 0.00 0.00 4.94
2176 2761 0.815095 TATTCGAGAGCTTGCGGTGA 59.185 50.000 8.93 0.00 0.00 4.02
2208 2793 5.413833 GGATACCGAGATACCGACATAGAAA 59.586 44.000 0.00 0.00 0.00 2.52
2232 2817 9.981114 AAATGAGTTCCTAAAAGTTAAATGTGG 57.019 29.630 0.00 0.00 0.00 4.17
2280 2865 2.872245 ACGAGGAAATGTCGGCAATATG 59.128 45.455 0.00 0.00 41.88 1.78
2317 2902 4.172807 TCCAAACTCCACTGGTATAAGGT 58.827 43.478 0.00 0.00 34.11 3.50
2336 2921 0.260230 TTTGGGCTTGAAGTGGACCA 59.740 50.000 0.00 0.00 0.00 4.02
2337 2922 0.482446 TTGGGCTTGAAGTGGACCAT 59.518 50.000 0.00 0.00 0.00 3.55
2382 2967 5.222254 TGGCCTCCTTAGGTTTTGAACTTAT 60.222 40.000 3.32 0.00 45.64 1.73
2453 3039 3.404224 ACTGCCAGATCATAGCTCATG 57.596 47.619 0.00 0.00 35.81 3.07
2454 3040 2.038689 ACTGCCAGATCATAGCTCATGG 59.961 50.000 0.00 0.00 35.16 3.66
2455 3041 1.451067 GCCAGATCATAGCTCATGGC 58.549 55.000 2.95 2.95 45.61 4.40
2456 3042 1.949547 GCCAGATCATAGCTCATGGCC 60.950 57.143 7.01 0.00 45.90 5.36
2457 3043 1.629353 CCAGATCATAGCTCATGGCCT 59.371 52.381 3.32 0.00 43.05 5.19
2458 3044 2.040012 CCAGATCATAGCTCATGGCCTT 59.960 50.000 3.32 0.00 43.05 4.35
2459 3045 3.075148 CAGATCATAGCTCATGGCCTTG 58.925 50.000 12.41 12.41 43.05 3.61
2460 3046 2.709934 AGATCATAGCTCATGGCCTTGT 59.290 45.455 17.54 2.25 43.05 3.16
2461 3047 3.137913 AGATCATAGCTCATGGCCTTGTT 59.862 43.478 17.54 8.07 43.05 2.83
2462 3048 3.370840 TCATAGCTCATGGCCTTGTTT 57.629 42.857 17.54 7.76 43.05 2.83
2463 3049 3.700538 TCATAGCTCATGGCCTTGTTTT 58.299 40.909 17.54 7.44 43.05 2.43
2652 3239 6.469782 AATGAAGGAAACTGACAAACATGT 57.530 33.333 0.00 0.00 42.68 3.21
2685 3272 6.349300 ACAGTTCAACACTACTGAAGACATT 58.651 36.000 9.03 0.00 43.45 2.71
2757 3344 4.892934 TCCATGATGCTTATTGGGGTAAAC 59.107 41.667 0.00 0.00 0.00 2.01
2904 3491 3.243704 GCAGTTGCATGGGTGAGTTTTAA 60.244 43.478 0.00 0.00 41.59 1.52
2939 3526 8.359060 TCAACTGTAACATTGCCATTTTTAAC 57.641 30.769 0.00 0.00 0.00 2.01
2940 3527 7.981789 TCAACTGTAACATTGCCATTTTTAACA 59.018 29.630 0.00 0.00 0.00 2.41
3005 3592 2.896044 CCTCACTCTATAGCTCATGCCA 59.104 50.000 0.00 0.00 40.80 4.92
3148 3749 9.101655 GAAAATAGTGCATAGAAAATGGCAAAT 57.898 29.630 0.00 0.00 38.10 2.32
3170 3771 2.408050 CAACCGGAGTTCTGTCTGAAG 58.592 52.381 9.46 0.00 35.01 3.02
3176 3777 3.487711 CGGAGTTCTGTCTGAAGATACCG 60.488 52.174 0.00 0.00 35.01 4.02
3233 3834 5.238583 AGCTACTTCACCATGTTGTTCTAC 58.761 41.667 0.00 0.00 0.00 2.59
3264 3865 6.974932 TCAGAGAAAGTTTCATGCTGTATC 57.025 37.500 17.65 4.06 31.73 2.24
3269 3870 6.421485 AGAAAGTTTCATGCTGTATCTCCAT 58.579 36.000 17.65 0.00 0.00 3.41
3296 3897 2.225491 GCGTAACACTCTCATTTTGGCA 59.775 45.455 0.00 0.00 0.00 4.92
3391 3993 5.389642 ACGTGTAATTGTGATTCTATGCG 57.610 39.130 0.00 0.00 0.00 4.73
3392 3994 4.270084 ACGTGTAATTGTGATTCTATGCGG 59.730 41.667 0.00 0.00 0.00 5.69
3399 4001 3.802866 TGTGATTCTATGCGGCATTACA 58.197 40.909 21.99 13.16 0.00 2.41
3568 4201 3.119990 ACGACATACATTTTCTTTGGGCG 60.120 43.478 0.00 0.00 0.00 6.13
3612 4245 1.807755 GCTCATGTTAGGCATCTGCGA 60.808 52.381 0.00 0.00 43.26 5.10
3721 4354 8.434589 TGTTCTCCCCTCATTAATTTTTCAAT 57.565 30.769 0.00 0.00 0.00 2.57
3722 4355 9.540538 TGTTCTCCCCTCATTAATTTTTCAATA 57.459 29.630 0.00 0.00 0.00 1.90
3727 4360 8.991275 TCCCCTCATTAATTTTTCAATAGCATT 58.009 29.630 0.00 0.00 0.00 3.56
3741 4374 6.446318 TCAATAGCATTTTTGAGACAACACC 58.554 36.000 0.00 0.00 0.00 4.16
3781 4414 1.444895 CTGGCTCGTGCATTTTGGC 60.445 57.895 12.07 0.00 41.91 4.52
3794 4729 3.397482 CATTTTGGCCGTTGGAATTTCA 58.603 40.909 0.00 0.00 0.00 2.69
3819 4754 4.386049 AGAACAGCGAGAAAATAAGTGACG 59.614 41.667 0.00 0.00 0.00 4.35
3880 4815 5.867330 AGATCCCAGATGAGAATTGATCAC 58.133 41.667 0.00 0.00 31.76 3.06
3881 4816 5.607592 AGATCCCAGATGAGAATTGATCACT 59.392 40.000 0.00 0.00 31.76 3.41
3882 4817 5.287674 TCCCAGATGAGAATTGATCACTC 57.712 43.478 0.00 0.00 0.00 3.51
3883 4818 4.718276 TCCCAGATGAGAATTGATCACTCA 59.282 41.667 14.76 14.76 43.25 3.41
3885 4820 6.556116 TCCCAGATGAGAATTGATCACTCATA 59.444 38.462 21.12 8.11 46.75 2.15
3886 4821 7.071572 TCCCAGATGAGAATTGATCACTCATAA 59.928 37.037 21.12 7.68 46.75 1.90
3887 4822 7.388224 CCCAGATGAGAATTGATCACTCATAAG 59.612 40.741 21.12 16.91 46.75 1.73
3888 4823 7.095144 CCAGATGAGAATTGATCACTCATAAGC 60.095 40.741 21.12 12.62 46.75 3.09
3889 4824 7.441458 CAGATGAGAATTGATCACTCATAAGCA 59.559 37.037 21.12 3.96 46.75 3.91
3890 4825 8.158132 AGATGAGAATTGATCACTCATAAGCAT 58.842 33.333 21.12 7.80 46.75 3.79
3891 4826 9.433153 GATGAGAATTGATCACTCATAAGCATA 57.567 33.333 21.12 0.00 46.75 3.14
3892 4827 8.828688 TGAGAATTGATCACTCATAAGCATAG 57.171 34.615 9.76 0.00 36.04 2.23
3893 4828 8.427276 TGAGAATTGATCACTCATAAGCATAGT 58.573 33.333 9.76 0.00 36.04 2.12
3894 4829 9.270640 GAGAATTGATCACTCATAAGCATAGTT 57.729 33.333 0.00 0.00 0.00 2.24
3897 4832 9.836864 AATTGATCACTCATAAGCATAGTTACA 57.163 29.630 0.00 0.00 0.00 2.41
3898 4833 9.836864 ATTGATCACTCATAAGCATAGTTACAA 57.163 29.630 0.00 0.00 0.00 2.41
3899 4834 9.665719 TTGATCACTCATAAGCATAGTTACAAA 57.334 29.630 0.00 0.00 0.00 2.83
3900 4835 9.665719 TGATCACTCATAAGCATAGTTACAAAA 57.334 29.630 0.00 0.00 0.00 2.44
3902 4837 9.890629 ATCACTCATAAGCATAGTTACAAAAGA 57.109 29.630 0.00 0.00 0.00 2.52
3903 4838 9.151471 TCACTCATAAGCATAGTTACAAAAGAC 57.849 33.333 0.00 0.00 0.00 3.01
3904 4839 8.110612 CACTCATAAGCATAGTTACAAAAGACG 58.889 37.037 0.00 0.00 0.00 4.18
3905 4840 7.000575 TCATAAGCATAGTTACAAAAGACGC 57.999 36.000 0.00 0.00 0.00 5.19
3906 4841 6.592220 TCATAAGCATAGTTACAAAAGACGCA 59.408 34.615 0.00 0.00 0.00 5.24
3907 4842 4.663636 AGCATAGTTACAAAAGACGCAC 57.336 40.909 0.00 0.00 0.00 5.34
3908 4843 3.435671 AGCATAGTTACAAAAGACGCACC 59.564 43.478 0.00 0.00 0.00 5.01
3909 4844 3.435671 GCATAGTTACAAAAGACGCACCT 59.564 43.478 0.00 0.00 0.00 4.00
3910 4845 4.628333 GCATAGTTACAAAAGACGCACCTA 59.372 41.667 0.00 0.00 0.00 3.08
3911 4846 5.121142 GCATAGTTACAAAAGACGCACCTAA 59.879 40.000 0.00 0.00 0.00 2.69
3912 4847 6.672357 GCATAGTTACAAAAGACGCACCTAAG 60.672 42.308 0.00 0.00 0.00 2.18
3913 4848 4.700700 AGTTACAAAAGACGCACCTAAGT 58.299 39.130 0.00 0.00 0.00 2.24
3917 4852 1.797025 AAAGACGCACCTAAGTGAGC 58.203 50.000 0.00 0.00 46.66 4.26
3926 4861 2.960819 ACCTAAGTGAGCGCTTAAGTG 58.039 47.619 13.26 11.79 31.43 3.16
3935 4870 3.410958 GCTTAAGTGCGCCTAGGC 58.589 61.111 24.75 24.75 37.85 3.93
3936 4871 1.153349 GCTTAAGTGCGCCTAGGCT 60.153 57.895 30.55 14.71 39.32 4.58
3937 4872 1.154814 GCTTAAGTGCGCCTAGGCTC 61.155 60.000 30.55 24.16 39.32 4.70
3938 4873 0.461961 CTTAAGTGCGCCTAGGCTCT 59.538 55.000 30.55 21.51 38.30 4.09
3939 4874 1.681793 CTTAAGTGCGCCTAGGCTCTA 59.318 52.381 30.55 14.20 35.86 2.43
3940 4875 1.319541 TAAGTGCGCCTAGGCTCTAG 58.680 55.000 30.55 16.51 35.86 2.43
3941 4876 1.395826 AAGTGCGCCTAGGCTCTAGG 61.396 60.000 30.55 16.12 35.86 3.02
3962 4897 2.091409 CGATAGCAAAACGTTTAGCGC 58.909 47.619 15.03 16.57 46.11 5.92
3963 4898 2.473212 CGATAGCAAAACGTTTAGCGCA 60.473 45.455 23.61 14.24 46.11 6.09
3964 4899 3.680789 GATAGCAAAACGTTTAGCGCAT 58.319 40.909 23.61 16.99 46.11 4.73
3965 4900 4.549298 CGATAGCAAAACGTTTAGCGCATA 60.549 41.667 23.61 15.95 46.11 3.14
3966 4901 3.546002 AGCAAAACGTTTAGCGCATAA 57.454 38.095 23.61 2.39 46.11 1.90
3967 4902 3.231160 AGCAAAACGTTTAGCGCATAAC 58.769 40.909 23.61 12.38 46.11 1.89
3968 4903 3.058501 AGCAAAACGTTTAGCGCATAACT 60.059 39.130 23.61 7.47 46.11 2.24
3969 4904 3.057609 GCAAAACGTTTAGCGCATAACTG 59.942 43.478 15.03 11.59 46.11 3.16
3970 4905 2.520686 AACGTTTAGCGCATAACTGC 57.479 45.000 11.47 0.00 46.11 4.40
3983 4918 3.611517 CATAACTGCACTTAATCTGCGC 58.388 45.455 0.00 0.00 37.46 6.09
3984 4919 1.522668 AACTGCACTTAATCTGCGCA 58.477 45.000 10.98 10.98 37.46 6.09
3985 4920 1.742761 ACTGCACTTAATCTGCGCAT 58.257 45.000 12.24 0.00 37.46 4.73
3986 4921 2.905075 ACTGCACTTAATCTGCGCATA 58.095 42.857 12.24 3.38 37.46 3.14
3987 4922 3.270027 ACTGCACTTAATCTGCGCATAA 58.730 40.909 12.24 6.11 37.46 1.90
3988 4923 3.310774 ACTGCACTTAATCTGCGCATAAG 59.689 43.478 21.82 21.82 37.46 1.73
3989 4924 2.032054 TGCACTTAATCTGCGCATAAGC 59.968 45.455 22.86 14.63 37.46 3.09
3990 4925 2.032054 GCACTTAATCTGCGCATAAGCA 59.968 45.455 22.86 4.27 45.96 3.91
3991 4926 3.304257 GCACTTAATCTGCGCATAAGCAT 60.304 43.478 22.86 7.57 46.97 3.79
3992 4927 4.216731 CACTTAATCTGCGCATAAGCATG 58.783 43.478 22.86 14.11 46.97 4.06
4004 4939 4.733972 CATAAGCATGCACTCTGATCAG 57.266 45.455 21.98 17.07 0.00 2.90
4005 4940 4.377897 CATAAGCATGCACTCTGATCAGA 58.622 43.478 23.75 23.75 35.85 3.27
4006 4941 3.345508 AAGCATGCACTCTGATCAGAA 57.654 42.857 25.09 11.79 36.94 3.02
4007 4942 3.345508 AGCATGCACTCTGATCAGAAA 57.654 42.857 25.09 12.19 36.94 2.52
4008 4943 3.682696 AGCATGCACTCTGATCAGAAAA 58.317 40.909 25.09 11.86 36.94 2.29
4009 4944 3.690139 AGCATGCACTCTGATCAGAAAAG 59.310 43.478 25.09 16.38 36.94 2.27
4010 4945 3.731264 GCATGCACTCTGATCAGAAAAGC 60.731 47.826 25.09 25.22 36.94 3.51
4011 4946 2.071540 TGCACTCTGATCAGAAAAGCG 58.928 47.619 25.09 15.69 36.94 4.68
4012 4947 1.202009 GCACTCTGATCAGAAAAGCGC 60.202 52.381 25.09 17.98 36.94 5.92
4013 4948 2.071540 CACTCTGATCAGAAAAGCGCA 58.928 47.619 25.09 1.70 36.94 6.09
4014 4949 2.481568 CACTCTGATCAGAAAAGCGCAA 59.518 45.455 25.09 0.97 36.94 4.85
4015 4950 2.740981 ACTCTGATCAGAAAAGCGCAAG 59.259 45.455 25.09 13.00 36.94 4.01
4016 4951 2.079158 TCTGATCAGAAAAGCGCAAGG 58.921 47.619 23.17 0.00 33.91 3.61
4017 4952 0.523072 TGATCAGAAAAGCGCAAGGC 59.477 50.000 11.47 0.00 44.05 4.35
4028 4963 2.661537 GCAAGGCGGTGGCAAAAC 60.662 61.111 0.00 0.00 42.47 2.43
4029 4964 2.811101 CAAGGCGGTGGCAAAACA 59.189 55.556 0.00 0.00 42.47 2.83
4030 4965 1.591327 CAAGGCGGTGGCAAAACAC 60.591 57.895 0.00 0.00 42.47 3.32
4031 4966 2.055042 AAGGCGGTGGCAAAACACA 61.055 52.632 0.00 0.00 43.08 3.72
4032 4967 2.279186 GGCGGTGGCAAAACACAC 60.279 61.111 0.00 0.00 43.08 3.82
4033 4968 2.492090 GCGGTGGCAAAACACACA 59.508 55.556 0.00 0.00 43.08 3.72
4034 4969 1.153745 GCGGTGGCAAAACACACAA 60.154 52.632 0.00 0.00 43.08 3.33
4035 4970 0.529555 GCGGTGGCAAAACACACAAT 60.530 50.000 0.00 0.00 43.08 2.71
4036 4971 1.933247 CGGTGGCAAAACACACAATT 58.067 45.000 0.00 0.00 43.08 2.32
4037 4972 2.799917 GCGGTGGCAAAACACACAATTA 60.800 45.455 0.00 0.00 43.08 1.40
4038 4973 3.448686 CGGTGGCAAAACACACAATTAA 58.551 40.909 0.00 0.00 43.08 1.40
4039 4974 3.244111 CGGTGGCAAAACACACAATTAAC 59.756 43.478 0.00 0.00 43.08 2.01
4040 4975 3.244111 GGTGGCAAAACACACAATTAACG 59.756 43.478 0.00 0.00 43.08 3.18
4041 4976 2.860735 TGGCAAAACACACAATTAACGC 59.139 40.909 0.00 0.00 0.00 4.84
4042 4977 2.219903 GGCAAAACACACAATTAACGCC 59.780 45.455 0.00 0.00 0.00 5.68
4043 4978 3.120041 GCAAAACACACAATTAACGCCT 58.880 40.909 0.00 0.00 0.00 5.52
4044 4979 4.291783 GCAAAACACACAATTAACGCCTA 58.708 39.130 0.00 0.00 0.00 3.93
4045 4980 4.147479 GCAAAACACACAATTAACGCCTAC 59.853 41.667 0.00 0.00 0.00 3.18
4046 4981 4.492791 AAACACACAATTAACGCCTACC 57.507 40.909 0.00 0.00 0.00 3.18
4047 4982 2.070783 ACACACAATTAACGCCTACCG 58.929 47.619 0.00 0.00 44.21 4.02
4048 4983 1.081094 ACACAATTAACGCCTACCGC 58.919 50.000 0.00 0.00 41.76 5.68
4049 4984 1.338389 ACACAATTAACGCCTACCGCT 60.338 47.619 0.00 0.00 41.76 5.52
4050 4985 1.735571 CACAATTAACGCCTACCGCTT 59.264 47.619 0.00 0.00 41.76 4.68
4051 4986 2.160813 CACAATTAACGCCTACCGCTTT 59.839 45.455 0.00 0.00 41.76 3.51
4052 4987 2.417586 ACAATTAACGCCTACCGCTTTC 59.582 45.455 0.00 0.00 41.76 2.62
4053 4988 2.676342 CAATTAACGCCTACCGCTTTCT 59.324 45.455 0.00 0.00 41.76 2.52
4054 4989 2.460757 TTAACGCCTACCGCTTTCTT 57.539 45.000 0.00 0.00 41.76 2.52
4055 4990 1.717194 TAACGCCTACCGCTTTCTTG 58.283 50.000 0.00 0.00 41.76 3.02
4056 4991 0.034337 AACGCCTACCGCTTTCTTGA 59.966 50.000 0.00 0.00 41.76 3.02
4057 4992 0.034337 ACGCCTACCGCTTTCTTGAA 59.966 50.000 0.00 0.00 41.76 2.69
4058 4993 0.442699 CGCCTACCGCTTTCTTGAAC 59.557 55.000 0.00 0.00 34.21 3.18
4059 4994 1.809684 GCCTACCGCTTTCTTGAACT 58.190 50.000 0.00 0.00 0.00 3.01
4060 4995 2.673043 CGCCTACCGCTTTCTTGAACTA 60.673 50.000 0.00 0.00 34.21 2.24
4061 4996 3.532542 GCCTACCGCTTTCTTGAACTAT 58.467 45.455 0.00 0.00 0.00 2.12
4062 4997 3.309954 GCCTACCGCTTTCTTGAACTATG 59.690 47.826 0.00 0.00 0.00 2.23
4233 5168 3.569701 CACAACAACATGAGGCTAAAGGT 59.430 43.478 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.094390 TCCGAGGTAAATCACAAGTCGG 60.094 50.000 1.44 1.44 43.10 4.79
49 50 0.234884 GCGACCTCCAAACTTTCACG 59.765 55.000 0.00 0.00 0.00 4.35
74 75 1.478654 CCCAACAACTTGTGGTAGCCT 60.479 52.381 0.00 0.00 0.00 4.58
76 77 1.975660 TCCCAACAACTTGTGGTAGC 58.024 50.000 0.00 0.00 0.00 3.58
112 119 1.210155 GAAGGCACGCCAACATCAC 59.790 57.895 11.35 0.00 38.92 3.06
122 129 0.719465 GGTGTTATCACGAAGGCACG 59.281 55.000 0.00 2.85 44.68 5.34
201 209 4.631813 CCAGGGATAAACGAAACTCTGAAG 59.368 45.833 0.00 0.00 0.00 3.02
213 221 1.133575 GGGTTAGGGCCAGGGATAAAC 60.134 57.143 6.18 0.00 0.00 2.01
223 231 2.443416 CACAAGTAAAGGGTTAGGGCC 58.557 52.381 0.00 0.00 0.00 5.80
230 238 6.384595 ACCAAAATAAACCACAAGTAAAGGGT 59.615 34.615 0.00 0.00 34.43 4.34
232 240 7.436970 GTGACCAAAATAAACCACAAGTAAAGG 59.563 37.037 0.00 0.00 0.00 3.11
267 275 5.052693 ACACAATGGGATATAGCATGTGT 57.947 39.130 12.38 12.38 33.81 3.72
271 279 7.422465 AAACAAACACAATGGGATATAGCAT 57.578 32.000 0.00 0.00 0.00 3.79
282 290 8.948853 ACGATATGAGTTAAACAAACACAATG 57.051 30.769 0.00 0.00 41.18 2.82
306 314 7.469260 ACAAGTGTACTAAATGTGTTCACAAC 58.531 34.615 9.68 3.47 32.77 3.32
407 416 9.838339 CATAGAGGGGGTGAATATGTATAATTC 57.162 37.037 0.00 0.00 0.00 2.17
412 421 5.726793 GGACATAGAGGGGGTGAATATGTAT 59.273 44.000 0.00 0.00 37.24 2.29
415 424 3.909995 TGGACATAGAGGGGGTGAATATG 59.090 47.826 0.00 0.00 0.00 1.78
416 425 4.228237 TGGACATAGAGGGGGTGAATAT 57.772 45.455 0.00 0.00 0.00 1.28
439 448 6.589523 GGATCTGATACTGATTGAAAGGATCG 59.410 42.308 0.00 0.00 37.76 3.69
440 449 7.678837 AGGATCTGATACTGATTGAAAGGATC 58.321 38.462 0.45 0.00 35.80 3.36
451 462 2.881513 GAGCACGAGGATCTGATACTGA 59.118 50.000 7.22 0.00 0.00 3.41
498 509 2.613223 GGGGCCACTAGAATATTCGCTC 60.613 54.545 4.39 6.70 0.00 5.03
499 510 1.348036 GGGGCCACTAGAATATTCGCT 59.652 52.381 4.39 0.00 0.00 4.93
500 511 1.071699 TGGGGCCACTAGAATATTCGC 59.928 52.381 6.53 6.75 0.00 4.70
501 512 2.104111 TGTGGGGCCACTAGAATATTCG 59.896 50.000 6.53 0.00 46.30 3.34
502 513 3.857157 TGTGGGGCCACTAGAATATTC 57.143 47.619 6.53 7.41 46.30 1.75
503 514 3.463329 ACATGTGGGGCCACTAGAATATT 59.537 43.478 6.53 0.00 46.30 1.28
506 517 1.298953 ACATGTGGGGCCACTAGAAT 58.701 50.000 6.53 0.00 46.30 2.40
620 950 6.404623 GCAAAGGTTTTTCTTGCAGGATTTTT 60.405 34.615 0.00 0.00 0.00 1.94
621 951 5.066375 GCAAAGGTTTTTCTTGCAGGATTTT 59.934 36.000 0.00 0.00 0.00 1.82
622 952 4.576053 GCAAAGGTTTTTCTTGCAGGATTT 59.424 37.500 0.00 0.00 0.00 2.17
623 953 4.129380 GCAAAGGTTTTTCTTGCAGGATT 58.871 39.130 0.00 0.00 0.00 3.01
624 954 3.134442 TGCAAAGGTTTTTCTTGCAGGAT 59.866 39.130 0.00 0.00 31.95 3.24
625 955 2.499289 TGCAAAGGTTTTTCTTGCAGGA 59.501 40.909 4.68 0.00 31.95 3.86
626 956 2.903798 TGCAAAGGTTTTTCTTGCAGG 58.096 42.857 4.68 0.00 31.95 4.85
627 957 4.943142 TTTGCAAAGGTTTTTCTTGCAG 57.057 36.364 8.05 0.00 34.72 4.41
628 958 5.893897 ATTTTGCAAAGGTTTTTCTTGCA 57.106 30.435 12.41 4.68 32.93 4.08
629 959 8.582930 GTTAAATTTTGCAAAGGTTTTTCTTGC 58.417 29.630 21.82 0.00 0.00 4.01
630 960 9.071221 GGTTAAATTTTGCAAAGGTTTTTCTTG 57.929 29.630 21.82 0.00 0.00 3.02
631 961 7.965655 CGGTTAAATTTTGCAAAGGTTTTTCTT 59.034 29.630 21.82 7.45 0.00 2.52
632 962 7.334671 TCGGTTAAATTTTGCAAAGGTTTTTCT 59.665 29.630 21.82 7.72 0.00 2.52
633 963 7.465173 TCGGTTAAATTTTGCAAAGGTTTTTC 58.535 30.769 21.82 16.45 0.00 2.29
634 964 7.379098 TCGGTTAAATTTTGCAAAGGTTTTT 57.621 28.000 21.82 17.16 0.00 1.94
635 965 6.037720 CCTCGGTTAAATTTTGCAAAGGTTTT 59.962 34.615 21.82 18.92 0.00 2.43
636 966 5.525745 CCTCGGTTAAATTTTGCAAAGGTTT 59.474 36.000 20.94 20.94 0.00 3.27
637 967 5.053811 CCTCGGTTAAATTTTGCAAAGGTT 58.946 37.500 12.41 12.40 0.00 3.50
638 968 4.342665 TCCTCGGTTAAATTTTGCAAAGGT 59.657 37.500 12.41 2.64 0.00 3.50
639 969 4.684242 GTCCTCGGTTAAATTTTGCAAAGG 59.316 41.667 12.41 6.08 0.00 3.11
640 970 5.285651 TGTCCTCGGTTAAATTTTGCAAAG 58.714 37.500 12.41 0.00 0.00 2.77
641 971 5.067936 TCTGTCCTCGGTTAAATTTTGCAAA 59.932 36.000 8.05 8.05 0.00 3.68
642 972 4.580995 TCTGTCCTCGGTTAAATTTTGCAA 59.419 37.500 0.00 0.00 0.00 4.08
698 1125 0.238553 GAGTCTTTGCGGGAAGTTGC 59.761 55.000 0.00 0.00 0.00 4.17
778 1205 3.397482 TCTGTGCTCTTTTCTCAGAAGC 58.603 45.455 0.00 0.00 32.98 3.86
1063 1509 2.741598 GACGCTCTTGCTGCTGCT 60.742 61.111 17.00 0.00 40.48 4.24
1103 1552 2.672996 CTGAAACCACGGGGCCTG 60.673 66.667 11.83 11.83 37.90 4.85
1105 1554 2.414658 TTACCTGAAACCACGGGGCC 62.415 60.000 1.73 0.00 40.34 5.80
1111 1560 6.799925 CGTACAAATGAATTACCTGAAACCAC 59.200 38.462 0.00 0.00 0.00 4.16
1130 1579 2.921912 GCACGGTAGTTGCTACGTACAA 60.922 50.000 0.00 0.00 37.79 2.41
1132 1581 1.262882 GCACGGTAGTTGCTACGTAC 58.737 55.000 0.00 0.00 37.79 3.67
1133 1582 0.171007 GGCACGGTAGTTGCTACGTA 59.829 55.000 0.00 0.00 37.79 3.57
1134 1583 1.080298 GGCACGGTAGTTGCTACGT 60.080 57.895 0.00 0.00 37.79 3.57
1135 1584 1.808390 GGGCACGGTAGTTGCTACG 60.808 63.158 0.00 0.00 37.79 3.51
1152 1601 1.865248 GCGATGAATTTTGCATCCGGG 60.865 52.381 0.00 0.00 39.10 5.73
1171 1620 2.354305 AGTGAACCACGACGACGC 60.354 61.111 7.30 0.00 43.96 5.19
1322 1771 7.192148 ACATCGTACTATCATAGTGACAGAC 57.808 40.000 7.66 0.00 39.81 3.51
1364 1816 2.143876 ATCAAAATTCCCCCACGGAG 57.856 50.000 0.00 0.00 43.39 4.63
1368 1820 2.028567 TGCGAAATCAAAATTCCCCCAC 60.029 45.455 0.00 0.00 0.00 4.61
1370 1822 3.118811 TGATGCGAAATCAAAATTCCCCC 60.119 43.478 0.00 0.00 0.00 5.40
1373 1825 6.890663 TCATTGATGCGAAATCAAAATTCC 57.109 33.333 15.28 0.00 40.84 3.01
1417 1870 3.110178 CACCTCCGGCGAACGTTC 61.110 66.667 18.47 18.47 42.24 3.95
1427 1880 1.080569 GTTTTGCCATGCACCTCCG 60.081 57.895 0.00 0.00 38.71 4.63
1429 1882 0.313672 TTCGTTTTGCCATGCACCTC 59.686 50.000 0.00 0.00 38.71 3.85
1451 1904 2.325509 ACATAAACAGCCGCGAAAAC 57.674 45.000 8.23 0.00 0.00 2.43
1584 2041 3.502920 ACATTTGCGAACGTTTTTGTGA 58.497 36.364 0.46 0.00 0.00 3.58
1606 2063 1.952296 GAACGTTCGCTAGGAGGGATA 59.048 52.381 13.36 0.00 37.03 2.59
1719 2178 3.400255 GGTACTTGGACAAAGGAGTGAC 58.600 50.000 0.00 0.00 40.51 3.67
1722 2181 1.270678 GCGGTACTTGGACAAAGGAGT 60.271 52.381 0.00 0.00 40.51 3.85
1835 2306 9.151471 CATATTATGGGTGTCTAATCCGTTAAG 57.849 37.037 0.00 0.00 0.00 1.85
1851 2322 6.179756 TCCATCGGAAATCACATATTATGGG 58.820 40.000 8.48 4.10 33.68 4.00
1921 2424 1.811965 TGACGACATGGCTTCATTTGG 59.188 47.619 3.08 0.00 0.00 3.28
2011 2514 6.183360 CGTACCAATGCTCTATGACACATTTT 60.183 38.462 0.00 0.00 30.54 1.82
2069 2572 5.163602 CGTCACTATCCTATCCTATGAAGGC 60.164 48.000 0.00 0.00 43.31 4.35
2092 2677 0.744281 AAAACAGTTGGAAGGGCACG 59.256 50.000 0.00 0.00 0.00 5.34
2093 2678 2.979814 AAAAACAGTTGGAAGGGCAC 57.020 45.000 0.00 0.00 0.00 5.01
2123 2708 3.571828 TGCATTGAGGACCGATTCAAAAA 59.428 39.130 0.00 0.00 36.93 1.94
2124 2709 3.057596 GTGCATTGAGGACCGATTCAAAA 60.058 43.478 0.00 0.00 36.93 2.44
2125 2710 2.487762 GTGCATTGAGGACCGATTCAAA 59.512 45.455 0.00 0.00 36.93 2.69
2126 2711 2.083774 GTGCATTGAGGACCGATTCAA 58.916 47.619 0.00 0.00 37.68 2.69
2127 2712 1.278985 AGTGCATTGAGGACCGATTCA 59.721 47.619 0.00 0.00 39.79 2.57
2128 2713 2.029838 AGTGCATTGAGGACCGATTC 57.970 50.000 0.00 0.00 39.79 2.52
2129 2714 2.359900 GAAGTGCATTGAGGACCGATT 58.640 47.619 0.00 0.00 39.79 3.34
2130 2715 1.407437 GGAAGTGCATTGAGGACCGAT 60.407 52.381 0.00 0.00 39.79 4.18
2131 2716 0.036388 GGAAGTGCATTGAGGACCGA 60.036 55.000 0.00 0.00 39.79 4.69
2132 2717 0.321564 TGGAAGTGCATTGAGGACCG 60.322 55.000 0.00 0.00 39.79 4.79
2133 2718 1.168714 GTGGAAGTGCATTGAGGACC 58.831 55.000 0.00 0.00 39.79 4.46
2134 2719 1.168714 GGTGGAAGTGCATTGAGGAC 58.831 55.000 0.00 0.00 39.14 3.85
2135 2720 0.038166 GGGTGGAAGTGCATTGAGGA 59.962 55.000 0.00 0.00 0.00 3.71
2136 2721 0.967380 GGGGTGGAAGTGCATTGAGG 60.967 60.000 0.00 0.00 0.00 3.86
2137 2722 0.038744 AGGGGTGGAAGTGCATTGAG 59.961 55.000 0.00 0.00 0.00 3.02
2138 2723 0.482446 AAGGGGTGGAAGTGCATTGA 59.518 50.000 0.00 0.00 0.00 2.57
2139 2724 2.214376 TAAGGGGTGGAAGTGCATTG 57.786 50.000 0.00 0.00 0.00 2.82
2140 2725 3.365472 GAATAAGGGGTGGAAGTGCATT 58.635 45.455 0.00 0.00 0.00 3.56
2141 2726 2.683742 CGAATAAGGGGTGGAAGTGCAT 60.684 50.000 0.00 0.00 0.00 3.96
2142 2727 1.339631 CGAATAAGGGGTGGAAGTGCA 60.340 52.381 0.00 0.00 0.00 4.57
2143 2728 1.065709 TCGAATAAGGGGTGGAAGTGC 60.066 52.381 0.00 0.00 0.00 4.40
2144 2729 2.500098 TCTCGAATAAGGGGTGGAAGTG 59.500 50.000 0.00 0.00 0.00 3.16
2145 2730 2.766828 CTCTCGAATAAGGGGTGGAAGT 59.233 50.000 0.00 0.00 0.00 3.01
2146 2731 2.483889 GCTCTCGAATAAGGGGTGGAAG 60.484 54.545 0.00 0.00 0.00 3.46
2147 2732 1.485066 GCTCTCGAATAAGGGGTGGAA 59.515 52.381 0.00 0.00 0.00 3.53
2148 2733 1.120530 GCTCTCGAATAAGGGGTGGA 58.879 55.000 0.00 0.00 0.00 4.02
2149 2734 1.123928 AGCTCTCGAATAAGGGGTGG 58.876 55.000 0.00 0.00 0.00 4.61
2150 2735 2.555199 CAAGCTCTCGAATAAGGGGTG 58.445 52.381 0.00 0.00 0.00 4.61
2151 2736 1.134371 GCAAGCTCTCGAATAAGGGGT 60.134 52.381 0.00 0.00 0.00 4.95
2152 2737 1.587547 GCAAGCTCTCGAATAAGGGG 58.412 55.000 0.00 0.00 0.00 4.79
2153 2738 1.212616 CGCAAGCTCTCGAATAAGGG 58.787 55.000 1.79 0.00 0.00 3.95
2154 2739 1.212616 CCGCAAGCTCTCGAATAAGG 58.787 55.000 8.87 0.00 0.00 2.69
2155 2740 1.590238 CACCGCAAGCTCTCGAATAAG 59.410 52.381 8.87 0.00 0.00 1.73
2156 2741 1.203758 TCACCGCAAGCTCTCGAATAA 59.796 47.619 8.87 0.00 0.00 1.40
2157 2742 0.815095 TCACCGCAAGCTCTCGAATA 59.185 50.000 8.87 0.00 0.00 1.75
2158 2743 0.176680 ATCACCGCAAGCTCTCGAAT 59.823 50.000 8.87 0.00 0.00 3.34
2159 2744 0.737367 CATCACCGCAAGCTCTCGAA 60.737 55.000 8.87 0.00 0.00 3.71
2160 2745 1.153765 CATCACCGCAAGCTCTCGA 60.154 57.895 8.87 0.00 0.00 4.04
2161 2746 2.169789 CCATCACCGCAAGCTCTCG 61.170 63.158 0.00 0.00 0.00 4.04
2162 2747 0.179062 ATCCATCACCGCAAGCTCTC 60.179 55.000 0.00 0.00 0.00 3.20
2163 2748 0.254178 AATCCATCACCGCAAGCTCT 59.746 50.000 0.00 0.00 0.00 4.09
2164 2749 0.379669 CAATCCATCACCGCAAGCTC 59.620 55.000 0.00 0.00 0.00 4.09
2165 2750 1.033746 CCAATCCATCACCGCAAGCT 61.034 55.000 0.00 0.00 0.00 3.74
2166 2751 1.434696 CCAATCCATCACCGCAAGC 59.565 57.895 0.00 0.00 0.00 4.01
2167 2752 0.394216 TCCCAATCCATCACCGCAAG 60.394 55.000 0.00 0.00 0.00 4.01
2168 2753 0.258484 ATCCCAATCCATCACCGCAA 59.742 50.000 0.00 0.00 0.00 4.85
2169 2754 1.135960 TATCCCAATCCATCACCGCA 58.864 50.000 0.00 0.00 0.00 5.69
2170 2755 1.523758 GTATCCCAATCCATCACCGC 58.476 55.000 0.00 0.00 0.00 5.68
2171 2756 1.608025 CGGTATCCCAATCCATCACCG 60.608 57.143 0.00 0.00 41.12 4.94
2172 2757 1.697432 TCGGTATCCCAATCCATCACC 59.303 52.381 0.00 0.00 0.00 4.02
2173 2758 2.632996 TCTCGGTATCCCAATCCATCAC 59.367 50.000 0.00 0.00 0.00 3.06
2174 2759 2.970987 TCTCGGTATCCCAATCCATCA 58.029 47.619 0.00 0.00 0.00 3.07
2175 2760 4.141914 GGTATCTCGGTATCCCAATCCATC 60.142 50.000 0.00 0.00 0.00 3.51
2176 2761 3.775316 GGTATCTCGGTATCCCAATCCAT 59.225 47.826 0.00 0.00 0.00 3.41
2208 2793 7.728532 ACCCACATTTAACTTTTAGGAACTCAT 59.271 33.333 0.00 0.00 41.75 2.90
2232 2817 1.741145 ACTTCGTTGGTGTGTGAAACC 59.259 47.619 0.00 0.00 38.26 3.27
2280 2865 2.194326 GGATGGAGCAAGAGGGCC 59.806 66.667 0.00 0.00 0.00 5.80
2317 2902 0.260230 TGGTCCACTTCAAGCCCAAA 59.740 50.000 0.00 0.00 0.00 3.28
2336 2921 9.054922 GGCCAATATTGCAACACAAATAATTAT 57.945 29.630 10.11 0.00 42.86 1.28
2337 2922 8.263640 AGGCCAATATTGCAACACAAATAATTA 58.736 29.630 5.01 0.00 42.86 1.40
2685 3272 1.202486 CCGATACCCGCTAGAGCAAAA 60.202 52.381 1.89 0.00 42.21 2.44
2757 3344 1.758936 TGAAGATTGGGCATCTGCAG 58.241 50.000 7.63 7.63 42.16 4.41
2818 3405 3.246619 GTCGATGACCTGAAGTTGAGAC 58.753 50.000 0.00 0.00 0.00 3.36
2904 3491 2.775384 TGTTACAGTTGAGGGTCTTGGT 59.225 45.455 0.00 0.00 0.00 3.67
2940 3527 9.787435 TGTGGTAATACAAAGATAACAACTTCT 57.213 29.630 0.00 0.00 0.00 2.85
3005 3592 6.150474 CCCGTAGATAAACCACTGAAAATGTT 59.850 38.462 0.00 0.00 0.00 2.71
3148 3749 0.679505 CAGACAGAACTCCGGTTGGA 59.320 55.000 0.00 0.00 43.88 3.53
3233 3834 6.087291 GCATGAAACTTTCTCTGAAAATGTCG 59.913 38.462 0.00 0.00 0.00 4.35
3264 3865 5.066117 TGAGAGTGTTACGCTAGTTATGGAG 59.934 44.000 0.00 0.00 0.00 3.86
3269 3870 6.588756 CCAAAATGAGAGTGTTACGCTAGTTA 59.411 38.462 0.00 0.00 0.00 2.24
3296 3897 2.870411 CGATGATGCAGATGTGACACAT 59.130 45.455 20.95 20.95 42.43 3.21
3391 3993 4.878397 AGTATCTTGAGCTGTTGTAATGCC 59.122 41.667 0.00 0.00 0.00 4.40
3392 3994 7.721286 ATAGTATCTTGAGCTGTTGTAATGC 57.279 36.000 0.00 0.00 0.00 3.56
3399 4001 9.155975 CAAAGTACAATAGTATCTTGAGCTGTT 57.844 33.333 0.00 0.00 31.45 3.16
3451 4084 3.493176 CCAGAAACTTTTCCCTGCAAAGG 60.493 47.826 0.51 0.00 37.92 3.11
3455 4088 2.174639 TCTCCAGAAACTTTTCCCTGCA 59.825 45.455 0.00 0.00 37.92 4.41
3530 4163 2.426024 TGTCGTAGGCAGGATGTACTTC 59.574 50.000 0.10 0.10 36.97 3.01
3568 4201 4.676924 GCACAGCTAAATGTTTTCTGACAC 59.323 41.667 11.67 0.00 31.30 3.67
3612 4245 1.321474 TCTAGAACGGACAACGGTGT 58.679 50.000 5.36 5.36 46.88 4.16
3721 4354 4.130857 TCGGTGTTGTCTCAAAAATGCTA 58.869 39.130 0.00 0.00 0.00 3.49
3722 4355 2.948979 TCGGTGTTGTCTCAAAAATGCT 59.051 40.909 0.00 0.00 0.00 3.79
3727 4360 2.294074 CCCTTCGGTGTTGTCTCAAAA 58.706 47.619 0.00 0.00 0.00 2.44
3741 4374 2.685100 GGTGTCTGACTTTACCCTTCG 58.315 52.381 9.51 0.00 0.00 3.79
3758 4391 3.925630 AATGCACGAGCCAGGGGTG 62.926 63.158 1.39 0.00 41.13 4.61
3781 4414 3.853307 GCTGTTCTGTGAAATTCCAACGG 60.853 47.826 0.00 0.00 0.00 4.44
3794 4729 5.177696 GTCACTTATTTTCTCGCTGTTCTGT 59.822 40.000 0.00 0.00 0.00 3.41
3819 4754 2.481289 AGAGGCTAGTTTGTCTTGGC 57.519 50.000 0.00 0.00 42.58 4.52
3848 4783 1.747355 CATCTGGGATCTTGCAACACC 59.253 52.381 0.00 0.00 0.00 4.16
3880 4815 7.119997 GCGTCTTTTGTAACTATGCTTATGAG 58.880 38.462 0.00 0.00 0.00 2.90
3881 4816 6.592220 TGCGTCTTTTGTAACTATGCTTATGA 59.408 34.615 0.00 0.00 0.00 2.15
3882 4817 6.682863 GTGCGTCTTTTGTAACTATGCTTATG 59.317 38.462 0.00 0.00 0.00 1.90
3883 4818 6.183360 GGTGCGTCTTTTGTAACTATGCTTAT 60.183 38.462 0.00 0.00 0.00 1.73
3884 4819 5.121142 GGTGCGTCTTTTGTAACTATGCTTA 59.879 40.000 0.00 0.00 0.00 3.09
3885 4820 4.083484 GGTGCGTCTTTTGTAACTATGCTT 60.083 41.667 0.00 0.00 0.00 3.91
3886 4821 3.435671 GGTGCGTCTTTTGTAACTATGCT 59.564 43.478 0.00 0.00 0.00 3.79
3887 4822 3.435671 AGGTGCGTCTTTTGTAACTATGC 59.564 43.478 0.00 0.00 0.00 3.14
3888 4823 6.367969 ACTTAGGTGCGTCTTTTGTAACTATG 59.632 38.462 0.00 0.00 0.00 2.23
3889 4824 6.367969 CACTTAGGTGCGTCTTTTGTAACTAT 59.632 38.462 0.00 0.00 36.61 2.12
3890 4825 5.693104 CACTTAGGTGCGTCTTTTGTAACTA 59.307 40.000 0.00 0.00 36.61 2.24
3891 4826 4.510340 CACTTAGGTGCGTCTTTTGTAACT 59.490 41.667 0.00 0.00 36.61 2.24
3892 4827 4.508861 TCACTTAGGTGCGTCTTTTGTAAC 59.491 41.667 0.00 0.00 42.72 2.50
3893 4828 4.695396 TCACTTAGGTGCGTCTTTTGTAA 58.305 39.130 0.00 0.00 42.72 2.41
3894 4829 4.304110 CTCACTTAGGTGCGTCTTTTGTA 58.696 43.478 0.00 0.00 42.72 2.41
3895 4830 3.131396 CTCACTTAGGTGCGTCTTTTGT 58.869 45.455 0.00 0.00 42.72 2.83
3896 4831 2.096218 GCTCACTTAGGTGCGTCTTTTG 60.096 50.000 0.00 0.00 42.72 2.44
3897 4832 2.143925 GCTCACTTAGGTGCGTCTTTT 58.856 47.619 0.00 0.00 42.72 2.27
3898 4833 1.797025 GCTCACTTAGGTGCGTCTTT 58.203 50.000 0.00 0.00 42.72 2.52
3899 4834 0.388649 CGCTCACTTAGGTGCGTCTT 60.389 55.000 0.00 0.00 42.72 3.01
3900 4835 1.213013 CGCTCACTTAGGTGCGTCT 59.787 57.895 0.00 0.00 42.72 4.18
3901 4836 3.768632 CGCTCACTTAGGTGCGTC 58.231 61.111 0.00 0.00 42.72 5.19
3904 4839 1.661112 CTTAAGCGCTCACTTAGGTGC 59.339 52.381 12.06 0.00 42.72 5.01
3905 4840 2.668457 CACTTAAGCGCTCACTTAGGTG 59.332 50.000 12.06 12.53 46.81 4.00
3906 4841 2.931320 GCACTTAAGCGCTCACTTAGGT 60.931 50.000 12.06 2.58 41.54 3.08
3907 4842 1.661112 GCACTTAAGCGCTCACTTAGG 59.339 52.381 12.06 1.82 35.83 2.69
3918 4853 3.410958 GCCTAGGCGCACTTAAGC 58.589 61.111 20.16 0.00 0.00 3.09
3929 4864 1.099689 GCTATCGCCTAGAGCCTAGG 58.900 60.000 18.85 18.85 36.38 3.02
3930 4865 1.827681 TGCTATCGCCTAGAGCCTAG 58.172 55.000 0.00 3.06 41.98 3.02
3931 4866 2.287977 TTGCTATCGCCTAGAGCCTA 57.712 50.000 0.00 0.00 41.98 3.93
3932 4867 1.414158 TTTGCTATCGCCTAGAGCCT 58.586 50.000 0.00 0.00 41.98 4.58
3933 4868 1.867865 GTTTTGCTATCGCCTAGAGCC 59.132 52.381 0.00 0.00 41.98 4.70
3934 4869 1.523095 CGTTTTGCTATCGCCTAGAGC 59.477 52.381 0.00 0.00 43.02 4.09
3935 4870 2.810650 ACGTTTTGCTATCGCCTAGAG 58.189 47.619 0.00 0.00 34.43 2.43
3936 4871 2.953466 ACGTTTTGCTATCGCCTAGA 57.047 45.000 0.00 0.00 34.43 2.43
3937 4872 4.550255 GCTAAACGTTTTGCTATCGCCTAG 60.550 45.833 31.13 15.07 36.28 3.02
3938 4873 3.307782 GCTAAACGTTTTGCTATCGCCTA 59.692 43.478 31.13 5.97 36.28 3.93
3939 4874 2.095372 GCTAAACGTTTTGCTATCGCCT 59.905 45.455 31.13 3.36 36.28 5.52
3940 4875 2.437626 GCTAAACGTTTTGCTATCGCC 58.562 47.619 31.13 8.70 36.28 5.54
3941 4876 2.091409 CGCTAAACGTTTTGCTATCGC 58.909 47.619 33.32 17.86 36.89 4.58
3942 4877 2.091409 GCGCTAAACGTTTTGCTATCG 58.909 47.619 33.32 23.15 46.11 2.92
3943 4878 3.111958 TGCGCTAAACGTTTTGCTATC 57.888 42.857 33.32 24.66 46.11 2.08
3944 4879 3.757745 ATGCGCTAAACGTTTTGCTAT 57.242 38.095 33.32 26.18 46.11 2.97
3945 4880 4.152759 AGTTATGCGCTAAACGTTTTGCTA 59.847 37.500 33.32 25.41 46.11 3.49
3946 4881 3.058501 AGTTATGCGCTAAACGTTTTGCT 60.059 39.130 33.32 22.57 46.11 3.91
3947 4882 3.057609 CAGTTATGCGCTAAACGTTTTGC 59.942 43.478 29.51 29.51 46.11 3.68
3948 4883 3.057609 GCAGTTATGCGCTAAACGTTTTG 59.942 43.478 20.19 18.19 43.87 2.44
3949 4884 3.231160 GCAGTTATGCGCTAAACGTTTT 58.769 40.909 20.19 2.08 43.87 2.43
3950 4885 2.846693 GCAGTTATGCGCTAAACGTTT 58.153 42.857 18.90 18.90 43.87 3.60
3951 4886 2.520686 GCAGTTATGCGCTAAACGTT 57.479 45.000 9.73 0.00 43.87 3.99
3962 4897 3.063861 TGCGCAGATTAAGTGCAGTTATG 59.936 43.478 14.63 11.14 46.41 1.90
3963 4898 3.270027 TGCGCAGATTAAGTGCAGTTAT 58.730 40.909 14.63 5.54 46.41 1.89
3964 4899 2.694213 TGCGCAGATTAAGTGCAGTTA 58.306 42.857 5.66 10.00 46.41 2.24
3965 4900 1.522668 TGCGCAGATTAAGTGCAGTT 58.477 45.000 5.66 12.28 46.41 3.16
3966 4901 3.231734 TGCGCAGATTAAGTGCAGT 57.768 47.368 5.66 0.00 46.41 4.40
3969 4904 2.032054 TGCTTATGCGCAGATTAAGTGC 59.968 45.455 23.26 15.07 43.34 4.40
3970 4905 3.950087 TGCTTATGCGCAGATTAAGTG 57.050 42.857 23.26 7.37 43.34 3.16
3971 4906 3.304257 GCATGCTTATGCGCAGATTAAGT 60.304 43.478 23.26 6.85 44.10 2.24
3972 4907 3.231965 GCATGCTTATGCGCAGATTAAG 58.768 45.455 18.32 19.39 44.10 1.85
3973 4908 3.272439 GCATGCTTATGCGCAGATTAA 57.728 42.857 18.32 9.09 44.10 1.40
3974 4909 2.975410 GCATGCTTATGCGCAGATTA 57.025 45.000 18.32 0.00 44.10 1.75
3975 4910 3.859650 GCATGCTTATGCGCAGATT 57.140 47.368 18.32 0.56 44.10 2.40
3982 4917 5.274466 TCTGATCAGAGTGCATGCTTATGC 61.274 45.833 21.67 5.36 39.14 3.14
3983 4918 4.377897 TCTGATCAGAGTGCATGCTTATG 58.622 43.478 21.67 14.29 32.82 1.90
3984 4919 4.684484 TCTGATCAGAGTGCATGCTTAT 57.316 40.909 21.67 4.26 32.82 1.73
3985 4920 4.476628 TTCTGATCAGAGTGCATGCTTA 57.523 40.909 23.92 4.02 38.88 3.09
3986 4921 3.345508 TTCTGATCAGAGTGCATGCTT 57.654 42.857 23.92 7.15 38.88 3.91
3987 4922 3.345508 TTTCTGATCAGAGTGCATGCT 57.654 42.857 23.92 0.00 38.88 3.79
3988 4923 3.731264 GCTTTTCTGATCAGAGTGCATGC 60.731 47.826 26.97 20.92 38.88 4.06
3989 4924 3.485381 CGCTTTTCTGATCAGAGTGCATG 60.485 47.826 28.96 18.44 38.88 4.06
3990 4925 2.676839 CGCTTTTCTGATCAGAGTGCAT 59.323 45.455 28.96 0.00 38.88 3.96
3991 4926 2.071540 CGCTTTTCTGATCAGAGTGCA 58.928 47.619 28.96 15.60 38.88 4.57
3992 4927 1.202009 GCGCTTTTCTGATCAGAGTGC 60.202 52.381 24.49 24.49 38.88 4.40
3993 4928 2.071540 TGCGCTTTTCTGATCAGAGTG 58.928 47.619 23.92 19.45 38.88 3.51
3994 4929 2.462456 TGCGCTTTTCTGATCAGAGT 57.538 45.000 23.92 0.00 38.88 3.24
3995 4930 2.095532 CCTTGCGCTTTTCTGATCAGAG 59.904 50.000 23.92 14.68 38.88 3.35
3996 4931 2.079158 CCTTGCGCTTTTCTGATCAGA 58.921 47.619 21.67 21.67 35.27 3.27
3997 4932 1.467035 GCCTTGCGCTTTTCTGATCAG 60.467 52.381 17.07 17.07 0.00 2.90
3998 4933 0.523072 GCCTTGCGCTTTTCTGATCA 59.477 50.000 9.73 0.00 0.00 2.92
3999 4934 3.319245 GCCTTGCGCTTTTCTGATC 57.681 52.632 9.73 0.00 0.00 2.92
4011 4946 2.661537 GTTTTGCCACCGCCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
4012 4947 1.591327 GTGTTTTGCCACCGCCTTG 60.591 57.895 0.00 0.00 0.00 3.61
4013 4948 2.055042 TGTGTTTTGCCACCGCCTT 61.055 52.632 0.00 0.00 34.35 4.35
4014 4949 2.441164 TGTGTTTTGCCACCGCCT 60.441 55.556 0.00 0.00 34.35 5.52
4015 4950 2.279186 GTGTGTTTTGCCACCGCC 60.279 61.111 0.00 0.00 34.35 6.13
4016 4951 0.529555 ATTGTGTGTTTTGCCACCGC 60.530 50.000 0.00 0.00 34.35 5.68
4017 4952 1.933247 AATTGTGTGTTTTGCCACCG 58.067 45.000 0.00 0.00 34.35 4.94
4018 4953 3.244111 CGTTAATTGTGTGTTTTGCCACC 59.756 43.478 0.00 0.00 34.35 4.61
4019 4954 3.302156 GCGTTAATTGTGTGTTTTGCCAC 60.302 43.478 0.00 0.00 35.86 5.01
4020 4955 2.860735 GCGTTAATTGTGTGTTTTGCCA 59.139 40.909 0.00 0.00 0.00 4.92
4021 4956 2.219903 GGCGTTAATTGTGTGTTTTGCC 59.780 45.455 0.00 0.00 0.00 4.52
4022 4957 3.120041 AGGCGTTAATTGTGTGTTTTGC 58.880 40.909 0.00 0.00 0.00 3.68
4023 4958 4.677832 GGTAGGCGTTAATTGTGTGTTTTG 59.322 41.667 0.00 0.00 0.00 2.44
4024 4959 4.555116 CGGTAGGCGTTAATTGTGTGTTTT 60.555 41.667 0.00 0.00 0.00 2.43
4025 4960 3.058777 CGGTAGGCGTTAATTGTGTGTTT 60.059 43.478 0.00 0.00 0.00 2.83
4026 4961 2.481185 CGGTAGGCGTTAATTGTGTGTT 59.519 45.455 0.00 0.00 0.00 3.32
4027 4962 2.070783 CGGTAGGCGTTAATTGTGTGT 58.929 47.619 0.00 0.00 0.00 3.72
4028 4963 1.201987 GCGGTAGGCGTTAATTGTGTG 60.202 52.381 0.00 0.00 0.00 3.82
4029 4964 1.081094 GCGGTAGGCGTTAATTGTGT 58.919 50.000 0.00 0.00 0.00 3.72
4030 4965 3.889780 GCGGTAGGCGTTAATTGTG 57.110 52.632 0.00 0.00 0.00 3.33
4040 4975 1.809684 AGTTCAAGAAAGCGGTAGGC 58.190 50.000 0.00 0.00 44.05 3.93
4041 4976 3.309954 GCATAGTTCAAGAAAGCGGTAGG 59.690 47.826 0.00 0.00 0.00 3.18
4042 4977 4.184629 AGCATAGTTCAAGAAAGCGGTAG 58.815 43.478 0.00 0.00 0.00 3.18
4043 4978 4.181578 GAGCATAGTTCAAGAAAGCGGTA 58.818 43.478 0.00 0.00 0.00 4.02
4044 4979 3.003480 GAGCATAGTTCAAGAAAGCGGT 58.997 45.455 0.00 0.00 0.00 5.68
4045 4980 3.002791 TGAGCATAGTTCAAGAAAGCGG 58.997 45.455 0.00 0.00 0.00 5.52
4046 4981 4.871993 ATGAGCATAGTTCAAGAAAGCG 57.128 40.909 0.00 0.00 0.00 4.68
4047 4982 7.148340 ACACTTATGAGCATAGTTCAAGAAAGC 60.148 37.037 0.00 0.00 0.00 3.51
4048 4983 8.261492 ACACTTATGAGCATAGTTCAAGAAAG 57.739 34.615 0.00 0.00 0.00 2.62
4049 4984 9.371136 CTACACTTATGAGCATAGTTCAAGAAA 57.629 33.333 0.00 0.00 0.00 2.52
4050 4985 7.492669 GCTACACTTATGAGCATAGTTCAAGAA 59.507 37.037 0.00 0.00 36.20 2.52
4051 4986 6.980978 GCTACACTTATGAGCATAGTTCAAGA 59.019 38.462 0.00 0.00 36.20 3.02
4052 4987 6.758416 TGCTACACTTATGAGCATAGTTCAAG 59.242 38.462 0.00 0.00 41.18 3.02
4053 4988 6.639563 TGCTACACTTATGAGCATAGTTCAA 58.360 36.000 0.00 0.00 41.18 2.69
4054 4989 6.220726 TGCTACACTTATGAGCATAGTTCA 57.779 37.500 0.00 0.00 41.18 3.18
4062 4997 5.401033 CAAGACATGCTACACTTATGAGC 57.599 43.478 0.00 0.00 36.72 4.26
4116 5051 0.961019 GCTTGGATGAAACTGTGCCA 59.039 50.000 0.00 0.00 0.00 4.92
4233 5168 7.640313 TCTTGGATAGTTTAGTCCTAGAGTCA 58.360 38.462 0.00 0.00 40.04 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.