>input_sequence_31661
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-----ATGATGGCATGTGCCCTCTCCATCGCTCAGCCTACCGCCCTCGCGACGTGCGGTGGCGGCGGCA---GCAGCAGC
AAGAGCGTCCCCAGGAATCTCCCGAAGCTGCCAGGCCCCGTGGTTTCAGGTAATTCATTTGTACGTAGCAACTACCGTGC
CCCGGATGCAAAATTCATCGCGTCGTCGTGGTTCACTGCGTGCTCTGCAATGTGTCACGCGCAGGCAGGATGAGAAGTCG
CGGTGTCGTTGCCAGGGCTGCGCAGGACAGTTCAGAAGCCTCCTCCGGGAGCGTCGTCAAATACGTCAAGAGTTCGGTGA
GTCTCCTCCCGTCTGTCACTATG---ATAGTACGATGTTGCAATTTGCCCGTAGGCTCCGTGGGGGAATTTTGATTT-CG
CATCAATGATTTATAAAATGCTATCCAACGAACGTTCGCCGGAGGTGCATGGCAAAACGAACGGTTTTCGCGGCTGTTTA
TGTTGCGGGAACATGGCAATTCCTTCAAACTAACGACAATTTTGACAGAAAAATCCTTTGTTGCCAGAAATTGCCATGTG
TTTCTGAAGAAATTGCCATGCATGCTCTGAAG----TTTTTCACAAAAACGTTCGCAAATGTTATCCCTCCTAGCGAACG
TTCGCTGGCCAATGGGGTCCTAAATTTT-ATATACCCCCGTTGAGAAAGGAAATAAACGTTTGCGAGCTGCGTTTGGCTA
GTTTTTTTTT-GTTAAGGTCACTCCTTTGTCC------------AAGTACCGCATAAATTCTTTGATTTTAAACAGGAGT
GTTAGTTTCCAAATGCATTTCCTATGGAAGACATGATCATCATTGATGAGATCCGCGTACATATACTTAACGGATTAGAC
ACCCATAATATGTGATTTCCGATGGAAAGCA--------------------------------TCATGGTCTTGAGATAA
GTTGAACACCATCAATCTATTAACCAAATGAAGCCATGTCGTCATGTCCATTTGTCGTGAGAGCTCACCGAAATGCAATA
TTCAGTTGGACCTCGCCTAAAACCAAAGCGACGAAAATGTGTCATAGAGCATTGGTACGCTTGTGAGAATAGCGTTGATA
ATGACAGGACTGCCTTCATAGGATAGGAT---------------------------------------------------
-------------------------------AGTGACGTGCCCTTCCAACTGTTTTTTCTTTTCTTTTTTTTGAATCGGT
CCTCAATGCACTTCCACCCCTTATTCGAGAGCTTGCGGTGATGGATTGGGATACCGAGATACCGACATAGAAATGAGTTC
CTAAAAGTTAAATGTGGGTTTCACACACCAACGAAGTTTAGCAACGAGGAAATGTCGGCAATATGGCCCTCTTGCTCCAT
CCAAACTCCACTGGTATAAGGTTTGGGCTTGAAGTGGACCATAATTATTTGTGTTGCAATATTGGCCTCCTTAGGTTTTG
AACTTATAATC-TTTAGTACCGATACTATATTAAGTCACCAAAAGGTTCGGACTATATACTGCCAGATCATAGCTCATGG
CCTTGTTTTCTATATTTTAAAATTTCCTGAGAAATTGTTGCAAGTCTTGCGGCGACAAAAAAACTGTCAGCAGTGTTCCT
ATGAACTACTTTTGTTG-TTTTTATGTCGAATGGAAGATATACAAATCAAATAGTTATTTTAAATTGTAGTTCCATCTAG
GCTTCTTTCTTGTAAAATGAAGGAAACTGACAAACATGTGAACTGAAACAGTTCAACACTACTGAAGACATTTTTGCTCT
AGCGGGTATCGGCTTTGCAGCAATTGCGGCATTCTGGGCTTCCATGATGCTTATTGGGGTAAACTGCAGATGCCCAATCT
TCAACTATGCAACGAGATAAACAAAATCAATCTGATAATCTATTGTCTCAACTTCAGGTCATCGACAAGCTCCCTGTTCT
CCCTCTTTTCTTCGAACTAATCGGAATAGCAGTTGCATGGGTGAGTTTTAACCAAGACCCTCAACTGTAACATTGCCATT
TTTAACAGAAGTTGTTATCTTTGTATTACCACAAGTCCACATGTCCCTGGCCTCACTCTATAGCTCATGCCAACATTTTC
AGTGGTTTATCTACGGGAACCTCCTCTTCAAGCCAGACAGGTAAACCTCAATTGTTCTTTCTTGAACACTTGT-------
-------GCCAAAGTTGTGGAAACATATATCTATCTGTTTGAGAAAATAGTGCATAGAAAATGGCAAATCCAACCGGAGT
TCTGTCTGAAGATACCGTCTATTTTGAATAACTGATGAGAAGAAACTGATAGCTACTTCACCATGTTGTTCTACGACATT
TTCAGAGAAAGTTTCATGCTGTATCTCCATAACTAGCGTAACACTCTCATTTTGGCATGTGTCACATCTGCATCATCGAT
AA-TTTTAACGCACAGGATGGCACTTACTTTTGAACGAACAGCTTGGCATACGTGTAATTGTGATTCTATGCGGCATTAC
AACAGCTCAAGATACTATTGTACTTTGT-------------------------------GGATTTACTAACATGTATATT
GATCCTTTGCAGGGAAAAGTTTCTGGAGAACATCAAAAGCTCAGTATCTCGAATCTTGGGGCAGTAA-------------
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>chr3D_1_TraesCS3D01G296900
GTAGGAGTGCTCGAGTGAGAAACCGACTTGTGATTTACCTCGGAAAATTCGTGAAAGTTTGGAGGTCGCCTCAAAGGCTA
CCACAAGTTGTTGGGAATCACATTC------AGCCTTCGTGATGTTGGCGTGCCTTCGTGATAACACCCACCTCTTCAAC
ATTGATTAGCTTCCCTT-AAGGAAGTGAACATTAGGATTCATCCTCATCTTCAGAGTTTCGTTTATCCCTGGCCCTAACC
CTTTACTTGTGGTTTATTTTGGTCACTTGACCTTACACATGCTATATCCCATTGTGTTTGTTTAACTCATATCGTTGTGA
ACACATTTAGTACACTTGTTATCTCACTGTAGCAATTGTTTAGGCCAACTTTATATTTCACGTTTACCTAAGCTTACTAT
AATAATC-AAGAAAAGAATTATACATATTCACCCCCTCTATGTCCATCG--ATCCTTTCAATCAGTATCAGATCCTCGTG
CTCTATGAGTAGAACATGCAATTAGATAGAGCGAATATTCTAGTGGCCCCACATGTAGTAGTATTGTTGTATGAGTAGTA
CTTCATCATAATTATTTTTG---GTATATCATAAATGTTAATA-------------------------------------
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---------------------------------------TTTTTTATAAACTTGATCAACCTTTACAAAAAAAATCCTGC
AAGAAAAACCTTTGCAAAATTTAACCGAGGACAGAATGTTAATATG----------------------------------
---------------------------------------------------------------TTTTAATATGGAGGTAG
TACAGCAACTTCCCGCAAAGACTCTGAGCAGTACAGCTCCTCTCTGAACGGGAAAATGAGTAGTACAACAAACAGTACAG
CAGCGCTTCTGA----GAAAAGAGCACAGAACAAAAAGGGGCAATCTGCAAACCTGCCATCTGATGGAGTGTTAGTGGAC
TAGGGAGCTCGCGCTCACATCCGCTGCTGCCTGCCTGGTGCCTGCTGCAGACGACGGCCAAACAGTAGTTTCCCCGGTTC
CTCCACGCACCATCCTCCGGACACGCCTCCCAGCTCCATCGTCA--------------ACAATCCCCAGGCGGGGGAT-C
TAGCCATGATGGCATGTGCCCTCTCCATCGCTCAGCCTACCGCCCTCGCGACGTGCGGTGGCGGCGGCA---GCAGCAGC
AAGAGCGTCCCCAGGAATCTCCCGAAGCTGCCAGGCCCCGTGGTTTCAGGTAATTCATTTGTACGTAGCAACTACCGTGC
CCCGGATGCAAAATTCATCGCGTCGTCGTGGTTCACTGCGTGCTCTGCAATGTGTCACGCGCAGGCAGGATGAGAAGTCG
CGGTGTCGTTGCCAGGGCTGCGCAGGACAGTTCAGAAGCCTCCTCCGGGAGCGTCGTCAAATACGTCAAGAGTTCGGTGA
GTCTCCTCCCGTCTGTCACTATG---ATAGTACGATGTTGCAATTTGCCCGTAGGCTCCGTGGGGGAATTTTGATTT-CG
CATCAATGATTTATAAAATGCTATCCAACGAACGTTCGCCGGAGGTGCATGGCAAAACGAACGGTTTTCGCGGCTGTTTA
TGTTGCGGGAACATGGCAATTCCTTCAAACTAACGACAATTTTGACAGAAAAATCCTTTGTTGCCAGAAATTGCCATGTG
TTTCTGAAGAAATTGCCATGCATGCTCTGAAG----TTTTTCACAAAAACGTTCGCAAATGTTATCCCTCCTAGCGAACG
TTCGCTGGCCAATGGGGTCCTAAATTTT-ATATACCCCCGTTGAGAAAGGAAATAAACGTTTGCGAGCTGCGTTTGGCTA
GTTTTTTTTT-GTTAAGGTCACTCCTTTGTCC------------AAGTACCGCATAAATTCTTTGATTTTAAACAGGAGT
GTTAGTTTCCAAATGCATTTCCTATGGAAGACATGATCATCATTGATGAGATCCGCGTACATATACTTAACGGATTAGAC
ACCCATAATATGTGATTTCCGATGGAAAGCA--------------------------------TCATGGTCTTGAGATAA
GTTGAACACCATCAATCTATTAACCAAATGAAGCCATGTCGTCATGTCCATTTGTCGTGAGAGCTCACCGAAATGCAATA
TTCAGTTGGACCTCGCCTAAAACCAAAGCGACGAAAATGTGTCATAGAGCATTGGTACGCTTGTGAGAATAGCGTTGATA
ATGACAGGACTGCCTTCATAGGATAGGAT---------------------------------------------------
-------------------------------AGTGACGTGCCCTTCCAACTGTTTTTTCTTTTCTTTTTTTTGAATCGGT
CCTCAATGCACTTCCACCCCTTATTCGAGAGCTTGCGGTGATGGATTGGGATACCGAGATACCGACATAGAAATGAGTTC
CTAAAAGTTAAATGTGGGTTTCACACACCAACGAAGTTTAGCAACGAGGAAATGTCGGCAATATGGCCCTCTTGCTCCAT
CCAAACTCCACTGGTATAAGGTTTGGGCTTGAAGTGGACCATAATTATTTGTGTTGCAATATTGGCCTCCTTAGGTTTTG
AACTTATAATC-TTTAGTACCGATACTATATTAAGTCACCAAAAGGTTCGGACTATATACTGCCAGATCATAGCTCATGG
CCTTGTTTTCTATATTTTAAAATTTCCTGAGAAATTGTTGCAAGTCTTGCGGCGACAAAAAAACTGTCAGCAGTGTTCCT
ATGAACTACTTTTGTTG-TTTTTATGTCGAATGGAAGATATACAAATCAAATAGTTATTTTAAATTGTAGTTCCATCTAG
GCTTCTTTCTTGTAAAATGAAGGAAACTGACAAACATGTGAACTGAAACAGTTCAACACTACTGAAGACATTTTTGCTCT
AGCGGGTATCGGCTTTGCAGCAATTGCGGCATTCTGGGCTTCCATGATGCTTATTGGGGTAAACTGCAGATGCCCAATCT
TCAACTATGCAACGAGATAAACAAAATCAATCTGATAATCTATTGTCTCAACTTCAGGTCATCGACAAGCTCCCTGTTCT
CCCTCTTTTCTTCGAACTAATCGGAATAGCAGTTGCATGGGTGAGTTTTAACCAAGACCCTCAACTGTAACATTGCCATT
TTTAACAGAAGTTGTTATCTTTGTATTACCACAAGTCCACATGTCCCTGGCCTCACTCTATAGCTCATGCCAACATTTTC
AGTGGTTTATCTACGGGAACCTCCTCTTCAAGCCAGACAGGTAAACCTCAATTGTTCTTTCTTGAACACTTGT-------
-------GCCAAAGTTGTGGAAACATATATCTATCTGTTTGAGAAAATAGTGCATAGAAAATGGCAAATCCAACCGGAGT
TCTGTCTGAAGATACCGTCTATTTTGAATAACTGATGAGAAGAAACTGATAGCTACTTCACCATGTTGTTCTACGACATT
TTCAGAGAAAGTTTCATGCTGTATCTCCATAACTAGCGTAACACTCTCATTTTGGCATGTGTCACATCTGCATCATCGAT
AA-TTTTAACGCACAGGATGGCACTTACTTTTGAACGAACAGCTTGGCATACGTGTAATTGTGATTCTATGCGGCATTAC
AACAGCTCAAGATACTATTGTACTTTGT-------------------------------GGATTTACTAACATGTATATT
GATCCTTTGCAGGGAAAAGTTTCTGGAGAACATCAAAAGCTCAGTATCTCGAATCTTGGGGCAGTAACTTCGCCGCGAAG
ACGAAGTACATCCTGCCTACGACATACATTTTCTTTGGGCGTGTCAGAAAACATTTAGCTGTGCGCTCATGTTAGGCATC
TGCGACACCGTTGTCCGTTCTAGATGTAATACGCTATCTCCTGTACAGGTTAAATCAAGCATTCTTCTGGTGGCAAAACT
TGAGTGTTTGTTCTCCCCTCATTAATTTTTCAATAGCATTTTTGAGACAACACCGAAGGGTAAAGTCAGACACCCCTGGC
TCGTGCATTTTGGC------------------------------------------------------------------
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----------------------------------------------------------------------------CGTT
GGAATTTCACAGAACAGCGAGAAAATAAGTGACGCCAAGACAAACTAGCCTCTTGTGGCACAGGTGTTGCAAGATCCCAG
ATGAGAATTGATCACTCATAAGCATAGTTACAAAAGACGCACCTAAGTGAGCGCTTAAGTGCGCCTAGGCTCTAGGCGAT
AGCAAAACGTTTAGCGCATAACTGCACTTAATCTGCGCATAAGCATGCACTCTGATCAGAAAAGCGCAAGGCGGTGGCAA
AACACACAATTAACGCCTACCGCTTTCTTGAACTATGCTCATAAGTGTAGCATGTCTTGCTAACGGGGAAAGGAAACATA
TGATGTTACATGGCACAGTTTCATCCAAGCTTATATTAGTATGACGATTGGAGAGAAGAACTTCACCATCAAAACACTAA
AAAAGAAGAAGGAACTAAAATGGTACACAACAACATGAGGCTAAAGGTGACTCTAGGACTAAACTATCCAAGATTACACT
TATTCTGACCAAGGAGAATAAATAGGAACTTCTTTAACCTAAATTAAATCATCAAGACAGGTACATG-CCCCCGGTCAAC
CTGTTAGAAGGTGCACAAACATGATGATTCTTGTACCCCAAATACAGACCTGAGGCGAACTATGTGTTCTCAGGCTTCAG
TCTTTTGTCTAAATGCCCACTCGAAGGGTTCCCAGCAACAAGATGTTTGCTGGAACTCTGAGGAAATGTTTTTACAACAG
GTACATCTAC
>chr3B_1
GTAGGAGTGCTCGAGTGAGAAATCGACTTGTGATTTACCCCCCCAAAATTGTGAAAGTTTGGAGGTTGCCTCAAGGTCTA
CCCCAAGTTGTTGGGAATGACA-------TCAGCCTTCATGATGTTGGT-TGCCTTCATGATAACACCCACCTCTTCAAC
ATTGATTAGCTTCTCTCCAAGAAAGTGAACACTAGGATTCATCCTCATATTCAGAGTTTCCTTTATCCCTAGCCCCATCT
CTTTACTTGTGGTTTATTTTAGTCACTTGACCTTGCACTGGCTATATCCTATTGTGTTTGTTTAACTCATATCATTGTGA
ACACATTTAGTACACTTGTTATCTCACTGTAGCAATTGTTTAGCCCAACTTTATATTTCATATTTGCCTAAACTTACGAA
TAATTAAGAAG--AAAATTTGTATCTATTCACCCCTTCTATATCCATTTCAATCCTTTCAACAAGTATCGGGTCCTCGTG
CTCTATGAGTAGAACGAGCAATTAGAT----------TTCTAGGGGCCCCTCGTGTAGTAGTATTTCTGTATGAGTAGTA
CTCCATCATAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAAATAGTGATC
TAAACGCTCTTATATTTCTTTATGGAGGGAGTATAATATTTTTTTGTAAACTTGATCAACCTTC----------------
--------------CAAAATTTAGCCGGGTACAGAATGTTAATATG----------------------------------
---------------------------------------------------------------CTTTAATATGGAGGTAG
TACAACAACTCCCCGCAAAGACTCTGAGCAGTACAGCTCTTCTTTGAAGTGGAAAATGAGTAGTACAACAAACAGTACAG
CAGCACTTCTGACCATGAAAAGAGCACAGAACAAAAGGGGGCAATCTGCAAACCTGCCATCTGATGGAGTGTTAGTGGAC
TAGGGAGCTCGCTCTCACATCCGCTGCTGCCT-------GCCTGCTGCAGACGACGGCCAAACAGTAGTTTCCCCGGTTG
CTCCACGCACCATCCTCCGGACGCGCCTCCCAGCTCCTTCGTAGCTACCTATCCTGCGACAATACCCAGGCGGGGGATCC
TAGCCATGATGGCATGTGCCCTCTCCATCGCCCAGCCTACCGCCCTCGCGCCGTGCGGCGGCGGCGGCGGCGGCAGCAGC
AAGAGCATCCCCAGGAATCTCCCGAAGCTGCGAAGCCCCATGGTTTCAGGTAATTCATCT----GTAGCAACTACCGTGC
TCCGGATGCAAAATTCACCACGTCGTCGTGGTTCACTGCGTGCTCTGCAATGTGTCACGCGCAGGCAGGATGAGAAGTCG
CGGTGTCGTTGCCAGGGCTGCGCAGGACAGTTCAGAAGCCTCCTCCGGGAGCGTCGTCAAATACGTCAAGAGTTCGGTGA
GTCTCCTCCCATCTCTCACTATA-------TATGATGTTGCAATTTGCCAGTAGGTTCCCTAGGAAAATTTTGATTTCCG
CATCAATGGTTTATAAAATGCTATCCAACAAGCGTTCGCTGTAGGTGGATGGCAAAACGAACGTTTTTTGCGGCAATTTA
CGTTGCGGGAACATGCCGATTCCTTCAAACTAACGACATTTTTTTTAGCAAAATCCTTTGTTGCCGGGAATTGCCATGTG
TTTCTGAAGAAATTGCCATGCGTGTTCTGAAGAA--TTTTCCACAAAAACATTCGCAAATGTCATTCCTCCTAGCGAACG
TTCGCTGGCCAATGGGGTCCTAAATTTTTATATACCCCTGTTGAGAAAGGAAATAAACGTTTGCGAGCTGCGTTTGGCTA
CTTTTTTTTT-GTTAAGATCGCTCCTTTGTCCAAGTACCGCATAAAGTACCGCATAAATTCTTTGATTTTAAACAGGAGT
GTTAGTTTCCAAATGCATATCCTATGCAAGACATGATCACCATTGATGAGATTCACATACATATAGTTAACGGATTAGGC
ATCCATAGTATGTGATTTCCGATGGAAAGCA--------------------------------TCATGGTCTTGAGATAA
GTTGAACACCATCAATCTATTAAACAAATGAAGCCATGTCGTCATGTCCATTTGTCGTGAGAGCTCACCGAAATGCAATA
TTCAGTTGGACCTCGCCAAAAACCAAAGCAACGGAAATGTGTCATAGAGCATTGGTACGCTTGTGAGAATAGCATTGATA
ATGACAGGACTACCTTCATAGGATAGGAT---------------------------------------------------
-------------------------------AGTGA--------------------------------------------
-----------------------------------------TGGATTGGGATACCGAGATACCGACATAGAAGTGAGTTC
CTAAAAGTTAAATGTGAGTTTCACACACCAATGAAGTTTAGCAACGAGGAAATGTCGGCAATATAGCCCTCTTGCTCCAT
CCAAACTCCACTGGTATAAGGCTTGGGCTTGAAGTGGACCGCAATTATTTGTGTTGCAATATTGGCCTCCTTAGGTTTTG
AACTTAGAATCTTTTAGTACCGATACCATATTAAGTCAGCAAAAGGTTCGGACTATATACTGCCAGAACATAGCTCAT--
---------CTATATTTTAAAATTTCCTGAGAAATTGTTGCAAGTCTTGCGGGGACAAAAAGACTGTCACCAGTGTTTCT
ATGAAGTACTTATGTTATTTTTTATGTCGAATGGAAGATATACAAATCAAATAGTTATTTCAAATTGTTGTTCCATCTAG
GCTTCTTTCTTGTAAAATGAAGGAAACTGACAAACATGGGAACTGAAACAGTTCAACACTACTGAAGACATATTTGCTCT
AGCGGGTATCGGCTTTGCAGCCATTGCGGCATTCTGGGCTTCCATGATGCTTATTGGGGTAAATTGCAGATGCCCAATCT
TCAACTATGCAACGAGATAAACAAAATCAATCTGATAATCTATTATCTCAACTTCAGGTCATCGACAAGCTCCCTGTTCT
CCCTCTTTTCTTCGAACTAATCGGAATAGCAGTTGCATGGGTGAGTTTTACCCAAGATCCTCAACTGTAACATTGCCATT
TTTAAATGAAGCTGTTATCTTTGTATTACCACAAGTCCACATGTCCCTGGCCTCACTCTATAGCTCATGCCGACATTTTC
AGTGGTTTATCTACGGGAACCTCCTCTTCAAGCCAGACAGGTAAACCTCAATTGTTCTTTCTTGAACACTTGT-------
-------GCCAAAGTTGTGGAAACATATATCTATCTGTTTGAGAAAATAGTGCATAGAAAATGGCAAAACCAACCAGAGC
TCTGTCTGAAAATACCATCTTTTTTGAATAACTGATGAGAAGAAACTGATAGCTACTTCACCATGTTGTTCTATGACATT
TTCAAAGAAAGTTTCATGCTGTATTTCCACCACTAGCGTAACACTCTCATTCTGGCTTGTGTCACATCTGCATCATCGAT
AACTTTTAACGCACAGGATGGCACTTACTTTTGAATGAAGAGCTTGGTATACGTGTAACTGTGATTCTATGCACCATTAC
TACAGCTCAAGATACTATTGTACTTTGT-------------------------------TGATTTACTAACATGTACATT
CATTCTTCGCAGGGAAAAGTTTCTGGAGAACATCAAAAGCTCAGTATCTCGAATCTTGGGGCAGTAACTTCGCCGCGAAG
ACAAAGTACATCCTGCCTACGACATACATTTTCTTTGGGCCTGTCAGAAAACATTTAGCTGTGCGCTCATGTTAGGCATC
TGCGTCACCGTTGTCCGTTCTAGATGTAATACGCTATCTCCTGTACAGGTTAAATCAAGCATTCTTCTGGTGGCAAAACT
TGAGTGTTTGTTCTCCCCTCATTAATTTTTCAGCGTAATGTTTGAGACAACATTGAATGGTAAAGTCAGAAACCCCTGGC
TCATGCATTTTGA-------------------------------------------------------------------
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----------------------------------------------------------------------------CGTT
GGAATTTCGCAGAAAAGCGAGAAAATAACTGAGCCCCCAACAAACTAGA--CTTGTGGCGCAAGTGTTGCAAGATCCCAG
ATGAGAAATGATCA------------------------------------------------------------------
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-------------------------------------CTCATAAGTGTAGCATGTCTTGCTAACGGGGAAAGGAAACATA
TGGTGTTACAAGGCACAGTTTCATCCTAGCTTATATTAGTATGACGATTGGAGAGAAGAACTTCACCATCAAAACACTAA
AAAAGAAGAAGGAACTAAAATGGTACACAACT---TGAGGCTAAAGGCGACTCTAGGACTAAACTATCCAAGATTACACT
TATTCTGACCAAGGAGAATAAATAGGAACTTCTTTAACCTAAATTAAATCATCAAGACAGGTACATG-CCCCCGGTCAAC
CTGTTAGAAGGTGCACAAACATGATGATTCTTGTACCCCAAATACAGACCTGAGGCGAACTATGTGTTCTCAGGCTTCAG
TCTTTTGTCTAAATGCCCACTCGAAGTGTTCCCAGCAACAAGATGTTTGCTGGAACTCTGAGGAAATGTTTTTACAACAG
GTACATCTAC
>chr3A_1
GTAGGAGTGCTCGAGGGAGAAATCGACT-GTGATTTACCTCGGAAAATTTGTGAAAGTTTGGAGGCCGCCTCAAGGTCTA
CCACAAGTTGTTGGGAATCACATTCGTTGTCAGCCTTCATGATGTCGGTGTACCTTCGTGGTAACACCCACCTCTTCAAC
ATTGATTAGCTTCCCTTGGA-----TGAACATTAGGATTCATCCTCATTTTCAGAGTTCCATTTATCCCTAGCCCTAGCT
CTTATTTGTGG--TTATTTTGGTCACTTAACCTTGCACTTGTTATATGCTATTGTGTTTGTTTAACTTATGTCATTGTGA
ACACATTTAATACACTTGTTATCTCACTCTAGCAATTGTTTAGGCCAACTTTATATTTCACATTCGCCTAAACTTACTAA
TAATTAAGAAAAAAATAATTGTATCTGTTCACCCCCTCTATGTCCATTTTAATCCTTTCAACCAATATGAGATCCTCATG
CTCTATGAGTAGAACGTGAAATTAGATATTAGAGAT-TTCTAGTGACCCCTCATGTAGTAGTATTGCCGTATGAGTAGTA
CTCCATCATAA---------------------------------------------------------------------
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>chr3A_555
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----ATCATAATTATTTTTAGTAGTATATCATAAATGTTAATA-------------------------------------
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---------------------------------------TTTTTTATAAACTTAATCAACCTT-----------------
------------TGCAAAATTTAAACGATGAT--AATGTTAATACTCCCTTCATCTTAAAATAAGTGTCTTAATCTTAGT
ATAATTTTAATATAAAGTTGTATTAAGATTGAGACATTTATGTTAAAACGGAGGGAGTATGTTTTATGATACGGAGGTAG
TACAAGAACTTCTCGCAAAGACTTTGAGCAGTACAGCTCCTCTCTGAACGGGAAAATGAGTGGTACAACAAACAGTACAG
CAGCACTTCTGA----GAAAAGAGCACGGAAGAAAAAGGGGCAATCTGCAAACCTGCCATCTGATGGAGTGTTAGTGGAC
TAGGGAGCTCGCGCTCACATCCGCTGCTGCCT-------GC----TGCAAACGACGGCCAAACAGTAGTT---------C
CTCCACGCATCATCCTCCGGACACGCCACTCAGC-CCATCGTCA--------------ACAATCCCCAGGCGGGGGAT-C
TAGCCATGATGGCATGCGCTCTCTCCATCGCCCAGCCTACCGCCCTCGCGCCGTGCGGCGGCGGCGGAGGCGGCAGCAGC
AAGATCGTCCCCAGGAATCTCCCGAAGCTGCGAAGCCCCATGGTTTCAGGTAATTCATCT----GTAGCAACTAC--TGC
TCCGGATGCAAAATTCATCACGTCGTCGTGGTTCACTGCGTGCTCCGCAATGTGTCACGCGCAGGCAGGATGAGAAGTCG
CGCTGTCGTCGCCAGGGCTGCGCAGGACAGTTCAGAAGCCTCCTCCGGGAGCGTCGTCAGATACGTCAAGAGTTCGGTGA
GTCTCCTCCA-TCTGTCACTAACTATATTGTATGATGTTGCAATTTGCCAGTAGGTTCTCTAGGAATATTTTGATTTCTG
CATCAATGATTTATAAAATGCTATCCAACAAACGTTCGCTGTAGGTGCATGGCAAAACGAACGTTTTTCGTGGCAATTTA
TGTTGTGGGAACATGGCAATTCCTTCAAACTAACGACAATTTTTACAGCAAAATCCTTTGTTGCCAGAAATTGCCATGTG
TTTCTAAAGAAACTGCCATGCGTGTTCCAAACATTTTTTTCCATAAAAACGTTCGCAAATGCCATCCCTCCTAGCGAACG
TTCGCTGGCCAACGGGGTCCTAAATT-TTATATACCCCCGTTGAGAAAGGAAATAAACGTATGCGAGCTGCGTTTGGCTA
GTTTTTTTTTTGTTAAGATCGCTCCTTTGTCC------------AAGTACCGCATAAATGCTTTGATTTTAATCAGGAGT
GTTAGTTTCCAAATGCATTTCCTATGGAAGACATGATCATCATTGATGAGATCCGCGTACATATAGTTAACGGATTAGAC
ATCCATCCTATGTGATTTCCGATGAAAAGCATCATGGTCTTTTTTTTTTGAGGGCCAAAAGCATCATGGTCTTGAGATAA
GCTGAACACCATCAATCTATTAAACAAATGAAGCCATGTCGTCATGTCCATTTGTCGTGAGAGCTCACCGAAATGCAATA
TTCAGTTGGACCTCGCCTAAAACCAAAGCGACGGAAATGTGTCGTAGAGCATCGGTACGCTTGTGAGAATAGCGTTGATA
ATGATAGGACTACCTTCATAGGATAGGATAGTGACGTGCCCTTCCAACTGTTTTTTCTTTTGTTTTTGAATCGGTCCTCA
ATGCACTTCCACCCCTTATTGGGGAGCTTGCAGTGA--------------------------------------------
-----------------------------------------TGGATTGGGATACCGAGATACCGACATAGAAGCGAGTTC
CTAAAAGTTAAATGTGAGTTTCACACACCAACGAAGTTTAGCAACGAGG-AATGTCGGCAATATAGCCCTCTTGCTCCAT
CCAGACTCCACTGGTATAAGGCTTGGGCTTGAAGTAGACTGCAATTATTTGTGTTGCAATATTGGACTCCTTAGGTTTTG
AACTTAGAATCTTTTAGTACCGATACCATATTAAGTCACCAAAAGGTTCGGGCTATATACTGCTAGATCATAGCTCAT--
---------CTATATTTTAAAATTTCCTTAGGAACTGTTGCAAGTCTTGCGGGGACAAAAAGACTGTCAGCAGTGTTTCT
ATGAACTATTTTTGTTG-TTTTTATGTCAAATGGAGGATATACAAACCAAATAGTTACCTTGAATTGTAGTTCCATTTAG
GCCTCTTTCTTATAAAATGAAGGAAACTGACAAACATGGGAACTGAAACAGTTCAACACTACTGAAGACATATTTGCTCT
AGCGGGTATCGGCTTTGCAGCAATTGCGGCATTCTGGGCTTCCATGATGCTTATTGGGGTAAATTGCAGACGCCCAATCT
TCAACTATGCAACGAGATAAGCAAAATCAATCTGATAATCTATTATCTCAACTTCAGGTCATCGACAAGCTCCCTGTTCT
CCCTCTTTTCTTCGAACTAATCGGAATAGCAGTTGCATGGGTGAGTTTTACCCAAGACCCTCAACTATAACATTGTCATT
TCTAAATGAAGTTGTTATCTCTGTATTACCACAAGTCCACATAGTCCTGGCCTCACTCTATAGCTCATGCTGACATTTTC
AGTGGTTTATCTACGGGAACCTCCTCTTCAAGCCAGACAGGTAACCTCAATTGTTTCTTTCTTGAACACTTGTTTATTGC
CATACTTGCCAAAGTTGCGGAGACGTATATCTATCCGTTTGAGAAAATAGTGCGTAGAAAATGGGAAAACCAACTGGAGT
TCTGTCTGAAAATAC--TCTATTTTGAATAACTGGTGAGAAGAAACTGACAGCTACTTCACCATGTTGTTCTATGACATT
TTCAGAGAAAGTTTCATGCTGTATTTCCACAACTAGCGTAACACTCTCATTTTGGCTTGTTTCACATCTGCATCATCGAT
AA-TTTTAACGCACAGGATGGCACTTACTTTTGAACAAACAGCTTGGCATACGTGTAATTGTGATTCTATGCACCATCAC
TACAGCTCAAGATACTATTGTACTTTGTGGATTTTTTTTCTTTTGACATGGTATTTTGTGGATTTACTAACATGTATATT
GATT-TTCACAGGGAAAAGTTTCTGGAGAACATCAAAAGCTCAGCATCTCGAATCTTGGGGCAGTAACTTCACCGTGAAG
AC--AGTACATCCTGCCTACGACATACATTTTCTTTGGGCCTGTCAGAAAACATTTAGCTGTGCGCTCATGTTAGGCATC
TGCGTCACCGTTGTCCGTTCTAGATGTAATACACCATCTCCTGTACAGGTTAAATCAAGCATTCTTCTGGTGGTAAAACT
TGAGTGTTTGTTCTCCACTTAATAATTTTTCAACGGCATGTTTGAGGCAACACTGAAGTGTAAAGTCAGAGACCCCTGGC
TCGTACATTTTGGGGCTCCTTTGATTCAAAGGAATTTTATAGGATTTCTGAAGGATTGAAACCCTTAGGATTTTTTTCTA
TGTTGCTCCTTTGATTCATAGAATTGAATCCCATAAGAATTTTTCCTATGGAATCCTTTGTACTACATTTAATAGGAAAT
CTAACATCCACTCCAACCTCTTTTTACAATTCCTTTGTTTTTCCCAGTCAAACACTTATTGCTAATCCTATAGGATTCAA
GTGGGCATGCCACTCCAATCCTATACTTTTCCAATTCCTACATTGTCAAAATCCTATGAATCAAAGAAGCCCTTGGCGTT
GGAATTTTGCACAACAGTGAGAAAATAAGTGACCCCAAGACAAACTAGCCTCTTGTGGCACAAGTGTTGCAAGATCCCAG
ATGAGAATTGATCA------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------CTCATAAGTGTAGCATGTCTTGCTAACGGGGTAAGGAAACATA
TGATGGTACAAGGCACAGTTTCATCCAAGCTTATCTTAGTATGACAATTGGAGAGAAGAACTTCACCATCAGAACACTAA
AGAAGAAGAAG----TAAAATGGTACACAACAACATGAGGCTAAAGGCGACTCTAGGACTAAACTATCCAAGATTACACT
TACTCTGACCAAGGAGAATAAATAGGAACTTCTTTAACCTAAATTAAATCATCAAGACTGGTACATGTCCCCCGGTCAAC
CTGTTAGAAGGTCCACAAACATGATGATTCTTGTACCCCAAATACAGCCCTGAGGCAAACTATGTGTTCTCAGGCTTCAG
TCTTTTGTCTAAATGCCCAATCGAAGGGTTCCCAGCAACAAGATGTTTGCTGGAACTCTGAGGAAATGTTTTTACAACAG
GTACATCTAC
>SNPs
----------------------S--------------------------S------------------------S-S---
--------------------------------------S---------S-------------------------------
---------------------S--------------------------S-----------S---------S------S-S
----------------------------------S---S----------S-----------------------S------
-------------------------------------------------------------S---S-----S-------S
S-SSSSS--------S----S--SS----------------------SS------------S------------------
---------------S------------SSSSSS--S-------------S---------------S-------------
--S----------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------SSSSSSS-----------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------S-------S---------S-----------
-------------------------------S-S-----S------------------S-SSSS----------------
S------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
----------S-----------S-----S---S----------------S-----S---S-S--SS--------------
-----------------------------S---------S-S---------------------S----------SS----
-------------------------------------------S----S-------------------------------
---------------------S--S---------------S---------------------S-----------------
--------------------------------------------------------------------------------
-----------------S--S-----------------------------------------------------------
-----------------------------------------------------------------S--------------
-S-----S------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
---------------------------------S----------------------------------------------
-----------S--------------------------------------------------------------------
------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------S-------
----------------S-----------------------------------------------S---------------
---------------------S------------------SS--------------------------------------
------S-------------------S---------------------------------------------------SS
SSSSSSSSS-------------------------------------------S--------S---------------S--
--------------------------------------------------------------------------------
--------------------------------------S--------------------------------S--------
---------------------------------------------------------------S----------------
--------------------------------------------S-----------------------------------
--------------------------------------------------S-----------------------------
-----SS----------------------------------------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
----------S-----S--------------------------------------------------------S------
------------------------S----S--------------------------S-----------------------
------------------------------------------------------------------------SS------
S-------------------------------------------------------------------------------
---S---S------------------------------------------------------------------------
--S-------------------------------------S---------------------------------------
----S---------------------------------------------------------------------------
---------------------------------SS----S-------------S----------------S---------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S------------------------S----------------------------S-----------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
----------S---------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>forward_449
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CACCCCCTCTATGTCCATCG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_2716
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TCGGT
CCTCAATGCACTTCC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>forward_2690
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TAGTGACGTGCCCTTCCAAC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_4834
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAGACGCACCTAAGTGAGCG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
