Multiple sequence alignment - TraesCS3D01G295000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G295000 chr3D 100.000 2654 0 0 1 2654 406413869 406411216 0.000000e+00 4902.0
1 TraesCS3D01G295000 chr3D 96.496 371 13 0 1 371 570306109 570305739 4.860000e-172 614.0
2 TraesCS3D01G295000 chr3D 76.214 206 44 5 2033 2235 281910163 281910366 1.300000e-18 104.0
3 TraesCS3D01G295000 chr3B 93.765 1620 66 14 438 2046 532642764 532641169 0.000000e+00 2399.0
4 TraesCS3D01G295000 chr1D 97.844 371 8 0 1 371 431511747 431511377 2.230000e-180 641.0
5 TraesCS3D01G295000 chr2D 97.826 368 7 1 1 368 650482137 650482503 3.730000e-178 634.0
6 TraesCS3D01G295000 chr2D 77.205 601 119 15 2050 2638 629859567 629860161 4.230000e-88 335.0
7 TraesCS3D01G295000 chr2D 78.316 475 84 12 2180 2649 367926851 367926391 3.340000e-74 289.0
8 TraesCS3D01G295000 chr5D 97.290 369 7 3 1 368 240527080 240527446 8.070000e-175 623.0
9 TraesCS3D01G295000 chr6B 91.057 369 30 1 3 368 67330223 67329855 1.830000e-136 496.0
10 TraesCS3D01G295000 chr6B 80.392 102 17 3 2032 2132 710350605 710350506 1.020000e-09 75.0
11 TraesCS3D01G295000 chr2B 88.919 370 37 4 1 368 296054707 296054340 1.120000e-123 453.0
12 TraesCS3D01G295000 chr2B 88.587 368 39 3 3 368 797487458 797487824 6.740000e-121 444.0
13 TraesCS3D01G295000 chr2B 78.873 497 87 15 2168 2651 754779322 754778831 1.190000e-83 320.0
14 TraesCS3D01G295000 chr2B 100.000 31 0 0 2033 2063 170851477 170851447 1.030000e-04 58.4
15 TraesCS3D01G295000 chr5B 88.267 375 39 5 1 372 666589571 666589943 6.740000e-121 444.0
16 TraesCS3D01G295000 chr5B 77.692 130 27 2 2035 2163 146906739 146906611 7.880000e-11 78.7
17 TraesCS3D01G295000 chr4A 88.108 370 40 4 1 368 169687438 169687805 1.130000e-118 436.0
18 TraesCS3D01G295000 chr4A 80.874 366 62 5 2285 2643 9619795 9619431 5.590000e-72 281.0
19 TraesCS3D01G295000 chr4A 78.851 383 62 12 2190 2563 720378481 720378109 9.490000e-60 241.0
20 TraesCS3D01G295000 chr4A 81.272 283 45 7 2375 2651 567564438 567564158 3.440000e-54 222.0
21 TraesCS3D01G295000 chr3A 81.197 351 57 5 2309 2650 688967690 688967340 9.360000e-70 274.0
22 TraesCS3D01G295000 chr3A 81.564 179 25 6 2309 2479 642114526 642114704 9.900000e-30 141.0
23 TraesCS3D01G295000 chr6A 74.720 625 132 22 2035 2643 183952265 183951651 3.390000e-64 255.0
24 TraesCS3D01G295000 chr6A 77.750 400 74 13 2261 2651 20743942 20744335 5.710000e-57 231.0
25 TraesCS3D01G295000 chr6A 78.030 132 28 1 2032 2163 602671629 602671499 6.090000e-12 82.4
26 TraesCS3D01G295000 chr5A 80.328 244 41 7 2414 2651 477460618 477460860 7.550000e-41 178.0
27 TraesCS3D01G295000 chr5A 89.362 47 4 1 2028 2073 509721973 509721927 1.030000e-04 58.4
28 TraesCS3D01G295000 chr1B 89.062 128 11 2 2301 2425 174362241 174362368 3.540000e-34 156.0
29 TraesCS3D01G295000 chr1B 79.381 97 18 2 2033 2128 413201372 413201277 1.700000e-07 67.6
30 TraesCS3D01G295000 chr7D 82.308 130 20 3 2035 2163 392829715 392829588 2.790000e-20 110.0
31 TraesCS3D01G295000 chr7D 100.000 38 0 0 381 418 559101790 559101827 1.320000e-08 71.3
32 TraesCS3D01G295000 chr7B 84.746 59 9 0 2105 2163 487332980 487333038 2.850000e-05 60.2
33 TraesCS3D01G295000 chr7A 96.875 32 1 0 2032 2063 232753387 232753418 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G295000 chr3D 406411216 406413869 2653 True 4902 4902 100.000 1 2654 1 chr3D.!!$R1 2653
1 TraesCS3D01G295000 chr3B 532641169 532642764 1595 True 2399 2399 93.765 438 2046 1 chr3B.!!$R1 1608
2 TraesCS3D01G295000 chr2D 629859567 629860161 594 False 335 335 77.205 2050 2638 1 chr2D.!!$F1 588
3 TraesCS3D01G295000 chr6A 183951651 183952265 614 True 255 255 74.720 2035 2643 1 chr6A.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.035439 GGAGGAGATTCCGGTGCAAA 60.035 55.0 0.0 0.0 42.75 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 2041 0.251916 CGTTGGAGATGCCCTAACCA 59.748 55.0 0.0 0.0 34.97 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.846973 GGAATTCCAGCCCCCTAGG 59.153 63.158 20.04 0.06 35.54 3.02
19 20 1.720077 GGAATTCCAGCCCCCTAGGG 61.720 65.000 22.25 22.25 46.16 3.53
35 36 4.018409 GGTTTCCCCATGCAGGAC 57.982 61.111 0.00 0.00 41.22 3.85
36 37 2.046285 GGTTTCCCCATGCAGGACG 61.046 63.158 0.00 0.00 41.22 4.79
37 38 1.303317 GTTTCCCCATGCAGGACGT 60.303 57.895 0.00 0.00 41.22 4.34
38 39 0.035820 GTTTCCCCATGCAGGACGTA 60.036 55.000 0.00 0.00 41.22 3.57
39 40 0.693622 TTTCCCCATGCAGGACGTAA 59.306 50.000 0.00 0.00 41.22 3.18
40 41 0.251916 TTCCCCATGCAGGACGTAAG 59.748 55.000 0.00 0.00 41.22 2.34
41 42 1.153168 CCCCATGCAGGACGTAAGG 60.153 63.158 0.00 0.00 41.22 2.69
42 43 1.602237 CCCATGCAGGACGTAAGGT 59.398 57.895 0.00 0.00 41.22 3.50
43 44 0.744414 CCCATGCAGGACGTAAGGTG 60.744 60.000 0.00 0.00 41.22 4.00
44 45 0.036388 CCATGCAGGACGTAAGGTGT 60.036 55.000 0.00 0.00 46.39 4.16
45 46 1.610624 CCATGCAGGACGTAAGGTGTT 60.611 52.381 0.00 0.00 46.39 3.32
46 47 1.464608 CATGCAGGACGTAAGGTGTTG 59.535 52.381 0.00 0.00 46.39 3.33
47 48 0.882927 TGCAGGACGTAAGGTGTTGC 60.883 55.000 0.00 0.00 46.39 4.17
48 49 0.882927 GCAGGACGTAAGGTGTTGCA 60.883 55.000 0.00 0.00 46.39 4.08
49 50 1.148310 CAGGACGTAAGGTGTTGCAG 58.852 55.000 0.00 0.00 46.39 4.41
50 51 1.045407 AGGACGTAAGGTGTTGCAGA 58.955 50.000 0.00 0.00 46.39 4.26
51 52 1.623811 AGGACGTAAGGTGTTGCAGAT 59.376 47.619 0.00 0.00 46.39 2.90
52 53 2.000447 GGACGTAAGGTGTTGCAGATC 59.000 52.381 0.00 0.00 46.39 2.75
53 54 1.654105 GACGTAAGGTGTTGCAGATCG 59.346 52.381 0.00 0.00 46.39 3.69
54 55 1.000506 ACGTAAGGTGTTGCAGATCGT 59.999 47.619 0.00 0.00 46.39 3.73
55 56 2.066262 CGTAAGGTGTTGCAGATCGTT 58.934 47.619 0.00 0.00 0.00 3.85
56 57 2.478894 CGTAAGGTGTTGCAGATCGTTT 59.521 45.455 0.00 0.00 0.00 3.60
57 58 3.664276 CGTAAGGTGTTGCAGATCGTTTG 60.664 47.826 0.00 0.00 0.00 2.93
58 59 1.967319 AGGTGTTGCAGATCGTTTGT 58.033 45.000 0.00 0.00 0.00 2.83
59 60 3.120321 AGGTGTTGCAGATCGTTTGTA 57.880 42.857 0.00 0.00 0.00 2.41
60 61 3.674997 AGGTGTTGCAGATCGTTTGTAT 58.325 40.909 0.00 0.00 0.00 2.29
61 62 3.436704 AGGTGTTGCAGATCGTTTGTATG 59.563 43.478 0.00 0.00 0.00 2.39
62 63 3.188460 GGTGTTGCAGATCGTTTGTATGT 59.812 43.478 0.00 0.00 0.00 2.29
63 64 4.151070 GTGTTGCAGATCGTTTGTATGTG 58.849 43.478 0.00 0.00 0.00 3.21
64 65 3.188254 TGTTGCAGATCGTTTGTATGTGG 59.812 43.478 0.00 0.00 0.00 4.17
65 66 3.326836 TGCAGATCGTTTGTATGTGGA 57.673 42.857 0.00 0.00 0.00 4.02
66 67 3.261580 TGCAGATCGTTTGTATGTGGAG 58.738 45.455 0.00 0.00 0.00 3.86
67 68 2.609459 GCAGATCGTTTGTATGTGGAGG 59.391 50.000 0.00 0.00 0.00 4.30
68 69 3.678806 GCAGATCGTTTGTATGTGGAGGA 60.679 47.826 0.00 0.00 0.00 3.71
69 70 4.115516 CAGATCGTTTGTATGTGGAGGAG 58.884 47.826 0.00 0.00 0.00 3.69
70 71 4.023980 AGATCGTTTGTATGTGGAGGAGA 58.976 43.478 0.00 0.00 0.00 3.71
71 72 4.651503 AGATCGTTTGTATGTGGAGGAGAT 59.348 41.667 0.00 0.00 0.00 2.75
72 73 4.819105 TCGTTTGTATGTGGAGGAGATT 57.181 40.909 0.00 0.00 0.00 2.40
73 74 4.755411 TCGTTTGTATGTGGAGGAGATTC 58.245 43.478 0.00 0.00 0.00 2.52
74 75 3.871594 CGTTTGTATGTGGAGGAGATTCC 59.128 47.826 0.00 0.00 37.77 3.01
75 76 3.819564 TTGTATGTGGAGGAGATTCCG 57.180 47.619 0.00 0.00 42.75 4.30
76 77 2.039418 TGTATGTGGAGGAGATTCCGG 58.961 52.381 0.00 0.00 42.75 5.14
77 78 2.040178 GTATGTGGAGGAGATTCCGGT 58.960 52.381 0.00 0.00 42.75 5.28
78 79 0.833287 ATGTGGAGGAGATTCCGGTG 59.167 55.000 0.00 0.00 42.75 4.94
79 80 1.153349 GTGGAGGAGATTCCGGTGC 60.153 63.158 0.00 0.00 42.75 5.01
80 81 1.612146 TGGAGGAGATTCCGGTGCA 60.612 57.895 0.00 0.00 42.75 4.57
81 82 1.198094 TGGAGGAGATTCCGGTGCAA 61.198 55.000 0.00 0.00 42.75 4.08
82 83 0.035439 GGAGGAGATTCCGGTGCAAA 60.035 55.000 0.00 0.00 42.75 3.68
83 84 1.613255 GGAGGAGATTCCGGTGCAAAA 60.613 52.381 0.00 0.00 42.75 2.44
84 85 1.468914 GAGGAGATTCCGGTGCAAAAC 59.531 52.381 0.00 0.00 42.75 2.43
85 86 0.526211 GGAGATTCCGGTGCAAAACC 59.474 55.000 0.00 0.00 46.60 3.27
93 94 3.289128 GGTGCAAAACCTTCCTTGC 57.711 52.632 0.00 0.00 46.55 4.01
94 95 0.249868 GGTGCAAAACCTTCCTTGCC 60.250 55.000 4.48 0.00 45.92 4.52
95 96 0.463620 GTGCAAAACCTTCCTTGCCA 59.536 50.000 4.48 0.00 45.92 4.92
96 97 0.752054 TGCAAAACCTTCCTTGCCAG 59.248 50.000 4.48 0.00 45.92 4.85
97 98 0.752658 GCAAAACCTTCCTTGCCAGT 59.247 50.000 0.00 0.00 41.69 4.00
98 99 1.960689 GCAAAACCTTCCTTGCCAGTA 59.039 47.619 0.00 0.00 41.69 2.74
99 100 2.029918 GCAAAACCTTCCTTGCCAGTAG 60.030 50.000 0.00 0.00 41.69 2.57
100 101 1.911057 AAACCTTCCTTGCCAGTAGC 58.089 50.000 0.00 0.00 44.14 3.58
101 102 0.038310 AACCTTCCTTGCCAGTAGCC 59.962 55.000 0.00 0.00 42.71 3.93
102 103 1.133809 ACCTTCCTTGCCAGTAGCCA 61.134 55.000 0.00 0.00 42.71 4.75
103 104 0.678048 CCTTCCTTGCCAGTAGCCAC 60.678 60.000 0.00 0.00 42.71 5.01
104 105 0.326264 CTTCCTTGCCAGTAGCCACT 59.674 55.000 0.00 0.00 42.71 4.00
105 106 0.771127 TTCCTTGCCAGTAGCCACTT 59.229 50.000 0.00 0.00 42.71 3.16
106 107 0.771127 TCCTTGCCAGTAGCCACTTT 59.229 50.000 0.00 0.00 42.71 2.66
107 108 0.883833 CCTTGCCAGTAGCCACTTTG 59.116 55.000 0.00 0.00 42.71 2.77
108 109 0.242017 CTTGCCAGTAGCCACTTTGC 59.758 55.000 0.00 0.00 42.71 3.68
109 110 1.178534 TTGCCAGTAGCCACTTTGCC 61.179 55.000 1.93 0.00 42.71 4.52
110 111 2.690778 GCCAGTAGCCACTTTGCCG 61.691 63.158 0.00 0.00 34.35 5.69
111 112 1.003839 CCAGTAGCCACTTTGCCGA 60.004 57.895 0.00 0.00 30.46 5.54
112 113 0.605319 CCAGTAGCCACTTTGCCGAA 60.605 55.000 0.00 0.00 30.46 4.30
113 114 0.798776 CAGTAGCCACTTTGCCGAAG 59.201 55.000 0.00 0.00 41.32 3.79
114 115 0.955919 AGTAGCCACTTTGCCGAAGC 60.956 55.000 0.00 0.00 39.04 3.86
123 124 4.615901 TGCCGAAGCATCATCGTT 57.384 50.000 0.00 0.00 46.52 3.85
124 125 3.750828 TGCCGAAGCATCATCGTTA 57.249 47.368 0.00 0.00 46.52 3.18
125 126 1.570813 TGCCGAAGCATCATCGTTAG 58.429 50.000 0.00 0.00 46.52 2.34
126 127 0.233332 GCCGAAGCATCATCGTTAGC 59.767 55.000 0.00 0.00 38.60 3.09
127 128 0.504384 CCGAAGCATCATCGTTAGCG 59.496 55.000 0.00 0.00 38.60 4.26
128 129 1.200483 CGAAGCATCATCGTTAGCGT 58.800 50.000 0.00 0.00 39.49 5.07
129 130 1.188138 CGAAGCATCATCGTTAGCGTC 59.812 52.381 0.00 0.00 39.49 5.19
130 131 1.188138 GAAGCATCATCGTTAGCGTCG 59.812 52.381 0.00 0.00 39.49 5.12
131 132 0.100682 AGCATCATCGTTAGCGTCGT 59.899 50.000 0.00 0.00 39.49 4.34
132 133 0.498927 GCATCATCGTTAGCGTCGTC 59.501 55.000 0.00 0.00 39.49 4.20
133 134 0.764801 CATCATCGTTAGCGTCGTCG 59.235 55.000 0.00 0.00 39.49 5.12
134 135 0.654160 ATCATCGTTAGCGTCGTCGA 59.346 50.000 6.17 0.00 39.71 4.20
135 136 0.654160 TCATCGTTAGCGTCGTCGAT 59.346 50.000 6.17 1.22 42.44 3.59
136 137 1.035772 CATCGTTAGCGTCGTCGATC 58.964 55.000 6.17 0.00 40.29 3.69
137 138 0.654160 ATCGTTAGCGTCGTCGATCA 59.346 50.000 6.17 0.00 38.38 2.92
138 139 0.247419 TCGTTAGCGTCGTCGATCAC 60.247 55.000 6.17 0.00 39.71 3.06
139 140 1.192436 CGTTAGCGTCGTCGATCACC 61.192 60.000 6.17 0.00 39.71 4.02
140 141 0.179181 GTTAGCGTCGTCGATCACCA 60.179 55.000 6.17 0.00 39.71 4.17
141 142 0.098200 TTAGCGTCGTCGATCACCAG 59.902 55.000 6.17 0.00 39.71 4.00
142 143 0.741927 TAGCGTCGTCGATCACCAGA 60.742 55.000 6.17 0.00 39.71 3.86
143 144 1.583967 GCGTCGTCGATCACCAGAG 60.584 63.158 6.17 0.00 39.71 3.35
144 145 1.062685 CGTCGTCGATCACCAGAGG 59.937 63.158 0.00 0.00 39.71 3.69
145 146 1.226717 GTCGTCGATCACCAGAGGC 60.227 63.158 0.00 0.00 0.00 4.70
146 147 2.278206 CGTCGATCACCAGAGGCG 60.278 66.667 0.00 0.00 0.00 5.52
147 148 2.885861 GTCGATCACCAGAGGCGT 59.114 61.111 0.00 0.00 0.00 5.68
148 149 1.215647 GTCGATCACCAGAGGCGTT 59.784 57.895 0.00 0.00 0.00 4.84
149 150 1.078759 GTCGATCACCAGAGGCGTTG 61.079 60.000 0.00 0.00 0.00 4.10
150 151 2.456119 CGATCACCAGAGGCGTTGC 61.456 63.158 0.00 0.00 0.00 4.17
160 161 4.821589 GGCGTTGCCTCCTCCTCG 62.822 72.222 0.00 0.00 46.69 4.63
161 162 4.821589 GCGTTGCCTCCTCCTCGG 62.822 72.222 0.00 0.00 0.00 4.63
162 163 3.068691 CGTTGCCTCCTCCTCGGA 61.069 66.667 0.00 0.00 40.30 4.55
170 171 2.007576 TCCTCCTCGGAGATGTCCA 58.992 57.895 14.45 0.00 44.18 4.02
171 172 0.106469 TCCTCCTCGGAGATGTCCAG 60.106 60.000 14.45 5.64 44.18 3.86
172 173 1.739049 CTCCTCGGAGATGTCCAGC 59.261 63.158 9.94 0.00 44.18 4.85
173 174 0.754957 CTCCTCGGAGATGTCCAGCT 60.755 60.000 9.94 0.00 44.18 4.24
174 175 0.324738 TCCTCGGAGATGTCCAGCTT 60.325 55.000 9.94 0.00 44.18 3.74
175 176 0.179089 CCTCGGAGATGTCCAGCTTG 60.179 60.000 9.94 0.00 44.18 4.01
176 177 0.809241 CTCGGAGATGTCCAGCTTGC 60.809 60.000 9.94 0.00 44.18 4.01
177 178 1.817099 CGGAGATGTCCAGCTTGCC 60.817 63.158 9.94 0.00 44.18 4.52
178 179 1.817099 GGAGATGTCCAGCTTGCCG 60.817 63.158 3.49 0.00 43.31 5.69
179 180 1.219124 GAGATGTCCAGCTTGCCGA 59.781 57.895 0.00 0.00 0.00 5.54
180 181 0.809241 GAGATGTCCAGCTTGCCGAG 60.809 60.000 0.00 0.00 0.00 4.63
181 182 1.078848 GATGTCCAGCTTGCCGAGT 60.079 57.895 0.00 0.00 0.00 4.18
182 183 1.364626 GATGTCCAGCTTGCCGAGTG 61.365 60.000 0.00 0.00 0.00 3.51
183 184 3.426568 GTCCAGCTTGCCGAGTGC 61.427 66.667 0.00 0.00 41.77 4.40
184 185 4.704833 TCCAGCTTGCCGAGTGCC 62.705 66.667 0.00 0.00 40.16 5.01
185 186 4.711949 CCAGCTTGCCGAGTGCCT 62.712 66.667 0.00 0.00 40.16 4.75
186 187 3.123620 CAGCTTGCCGAGTGCCTC 61.124 66.667 0.00 0.00 40.16 4.70
187 188 4.400961 AGCTTGCCGAGTGCCTCC 62.401 66.667 0.00 0.00 40.16 4.30
188 189 4.400961 GCTTGCCGAGTGCCTCCT 62.401 66.667 0.00 0.00 40.16 3.69
189 190 2.125350 CTTGCCGAGTGCCTCCTC 60.125 66.667 0.00 0.00 40.16 3.71
190 191 3.672295 CTTGCCGAGTGCCTCCTCC 62.672 68.421 0.00 0.00 40.16 4.30
192 193 3.474570 GCCGAGTGCCTCCTCCAT 61.475 66.667 0.00 0.00 0.00 3.41
193 194 2.818132 CCGAGTGCCTCCTCCATC 59.182 66.667 0.00 0.00 0.00 3.51
194 195 1.760086 CCGAGTGCCTCCTCCATCT 60.760 63.158 0.00 0.00 0.00 2.90
195 196 1.440893 CGAGTGCCTCCTCCATCTG 59.559 63.158 0.00 0.00 0.00 2.90
196 197 1.145819 GAGTGCCTCCTCCATCTGC 59.854 63.158 0.00 0.00 0.00 4.26
197 198 2.202987 GTGCCTCCTCCATCTGCG 60.203 66.667 0.00 0.00 0.00 5.18
198 199 4.166888 TGCCTCCTCCATCTGCGC 62.167 66.667 0.00 0.00 0.00 6.09
199 200 4.925861 GCCTCCTCCATCTGCGCC 62.926 72.222 4.18 0.00 0.00 6.53
200 201 4.247380 CCTCCTCCATCTGCGCCC 62.247 72.222 4.18 0.00 0.00 6.13
201 202 4.598894 CTCCTCCATCTGCGCCCG 62.599 72.222 4.18 0.00 0.00 6.13
221 222 3.043419 CGGAGCGAGGGGATAGTG 58.957 66.667 0.00 0.00 0.00 2.74
222 223 2.737830 GGAGCGAGGGGATAGTGC 59.262 66.667 0.00 0.00 0.00 4.40
223 224 2.134287 GGAGCGAGGGGATAGTGCA 61.134 63.158 0.00 0.00 0.00 4.57
224 225 1.068250 GAGCGAGGGGATAGTGCAC 59.932 63.158 9.40 9.40 0.00 4.57
225 226 2.109181 GCGAGGGGATAGTGCACC 59.891 66.667 14.63 0.00 0.00 5.01
226 227 2.417516 CGAGGGGATAGTGCACCG 59.582 66.667 14.63 3.09 0.00 4.94
227 228 2.109181 GAGGGGATAGTGCACCGC 59.891 66.667 14.63 6.63 39.01 5.68
228 229 2.365635 AGGGGATAGTGCACCGCT 60.366 61.111 14.63 9.14 43.02 5.52
229 230 2.109181 GGGGATAGTGCACCGCTC 59.891 66.667 14.63 7.78 36.42 5.03
230 231 2.109181 GGGATAGTGCACCGCTCC 59.891 66.667 14.63 16.39 0.00 4.70
231 232 2.435693 GGGATAGTGCACCGCTCCT 61.436 63.158 22.22 4.86 0.00 3.69
232 233 1.068250 GGATAGTGCACCGCTCCTC 59.932 63.158 14.63 1.45 0.00 3.71
233 234 1.395826 GGATAGTGCACCGCTCCTCT 61.396 60.000 14.63 0.00 0.00 3.69
234 235 0.461961 GATAGTGCACCGCTCCTCTT 59.538 55.000 14.63 0.00 0.00 2.85
235 236 0.461961 ATAGTGCACCGCTCCTCTTC 59.538 55.000 14.63 0.00 0.00 2.87
236 237 1.605058 TAGTGCACCGCTCCTCTTCC 61.605 60.000 14.63 0.00 0.00 3.46
237 238 2.922503 TGCACCGCTCCTCTTCCA 60.923 61.111 0.00 0.00 0.00 3.53
238 239 2.347490 GCACCGCTCCTCTTCCAA 59.653 61.111 0.00 0.00 0.00 3.53
239 240 2.035442 GCACCGCTCCTCTTCCAAC 61.035 63.158 0.00 0.00 0.00 3.77
240 241 1.376037 CACCGCTCCTCTTCCAACC 60.376 63.158 0.00 0.00 0.00 3.77
241 242 1.536662 ACCGCTCCTCTTCCAACCT 60.537 57.895 0.00 0.00 0.00 3.50
242 243 1.128188 ACCGCTCCTCTTCCAACCTT 61.128 55.000 0.00 0.00 0.00 3.50
243 244 0.036875 CCGCTCCTCTTCCAACCTTT 59.963 55.000 0.00 0.00 0.00 3.11
244 245 1.160137 CGCTCCTCTTCCAACCTTTG 58.840 55.000 0.00 0.00 0.00 2.77
245 246 0.884514 GCTCCTCTTCCAACCTTTGC 59.115 55.000 0.00 0.00 0.00 3.68
246 247 1.539157 CTCCTCTTCCAACCTTTGCC 58.461 55.000 0.00 0.00 0.00 4.52
247 248 0.250727 TCCTCTTCCAACCTTTGCCG 60.251 55.000 0.00 0.00 0.00 5.69
248 249 1.244019 CCTCTTCCAACCTTTGCCGG 61.244 60.000 0.00 0.00 0.00 6.13
249 250 1.866853 CTCTTCCAACCTTTGCCGGC 61.867 60.000 22.73 22.73 0.00 6.13
250 251 2.123683 TTCCAACCTTTGCCGGCA 60.124 55.556 29.03 29.03 0.00 5.69
251 252 2.146073 CTTCCAACCTTTGCCGGCAG 62.146 60.000 30.75 20.97 0.00 4.85
252 253 4.362476 CCAACCTTTGCCGGCAGC 62.362 66.667 30.75 1.28 44.14 5.25
253 254 4.362476 CAACCTTTGCCGGCAGCC 62.362 66.667 30.75 0.00 42.71 4.85
265 266 2.410469 GCAGCCGATGTTGCCATC 59.590 61.111 0.00 0.00 42.30 3.51
271 272 3.827634 GATGTTGCCATCGTCCCC 58.172 61.111 0.00 0.00 38.28 4.81
272 273 2.124736 ATGTTGCCATCGTCCCCG 60.125 61.111 0.00 0.00 0.00 5.73
281 282 2.660802 TCGTCCCCGAGCTTTTCC 59.339 61.111 0.00 0.00 38.40 3.13
282 283 1.911766 TCGTCCCCGAGCTTTTCCT 60.912 57.895 0.00 0.00 38.40 3.36
283 284 1.003718 CGTCCCCGAGCTTTTCCTT 60.004 57.895 0.00 0.00 35.63 3.36
284 285 1.298859 CGTCCCCGAGCTTTTCCTTG 61.299 60.000 0.00 0.00 35.63 3.61
285 286 1.303317 TCCCCGAGCTTTTCCTTGC 60.303 57.895 0.00 0.00 0.00 4.01
286 287 2.690778 CCCCGAGCTTTTCCTTGCG 61.691 63.158 0.00 0.00 0.00 4.85
287 288 2.690778 CCCGAGCTTTTCCTTGCGG 61.691 63.158 0.00 0.00 38.54 5.69
288 289 2.176792 CGAGCTTTTCCTTGCGGC 59.823 61.111 0.00 0.00 0.00 6.53
289 290 2.568612 GAGCTTTTCCTTGCGGCC 59.431 61.111 0.00 0.00 0.00 6.13
290 291 2.991540 AGCTTTTCCTTGCGGCCC 60.992 61.111 0.00 0.00 0.00 5.80
291 292 4.419939 GCTTTTCCTTGCGGCCCG 62.420 66.667 0.00 0.00 0.00 6.13
303 304 4.562425 GGCCCGCCGATGGATTCA 62.562 66.667 0.00 0.00 0.00 2.57
304 305 2.974698 GCCCGCCGATGGATTCAG 60.975 66.667 0.00 0.00 0.00 3.02
305 306 2.974698 CCCGCCGATGGATTCAGC 60.975 66.667 0.00 0.00 0.00 4.26
311 312 3.654020 GATGGATTCAGCGGCCGC 61.654 66.667 42.34 42.34 42.33 6.53
325 326 4.570663 CCGCCGTCGAGATCCACC 62.571 72.222 0.00 0.00 38.10 4.61
326 327 4.570663 CGCCGTCGAGATCCACCC 62.571 72.222 0.00 0.00 38.10 4.61
327 328 3.458163 GCCGTCGAGATCCACCCA 61.458 66.667 0.00 0.00 0.00 4.51
328 329 3.014085 GCCGTCGAGATCCACCCAA 62.014 63.158 0.00 0.00 0.00 4.12
329 330 1.594833 CCGTCGAGATCCACCCAAA 59.405 57.895 0.00 0.00 0.00 3.28
330 331 0.036765 CCGTCGAGATCCACCCAAAA 60.037 55.000 0.00 0.00 0.00 2.44
331 332 1.076332 CGTCGAGATCCACCCAAAAC 58.924 55.000 0.00 0.00 0.00 2.43
332 333 1.450025 GTCGAGATCCACCCAAAACC 58.550 55.000 0.00 0.00 0.00 3.27
333 334 1.003233 GTCGAGATCCACCCAAAACCT 59.997 52.381 0.00 0.00 0.00 3.50
334 335 2.235402 GTCGAGATCCACCCAAAACCTA 59.765 50.000 0.00 0.00 0.00 3.08
335 336 2.500098 TCGAGATCCACCCAAAACCTAG 59.500 50.000 0.00 0.00 0.00 3.02
336 337 2.236395 CGAGATCCACCCAAAACCTAGT 59.764 50.000 0.00 0.00 0.00 2.57
337 338 3.679083 CGAGATCCACCCAAAACCTAGTC 60.679 52.174 0.00 0.00 0.00 2.59
338 339 2.236395 AGATCCACCCAAAACCTAGTCG 59.764 50.000 0.00 0.00 0.00 4.18
339 340 0.035739 TCCACCCAAAACCTAGTCGC 59.964 55.000 0.00 0.00 0.00 5.19
340 341 0.958876 CCACCCAAAACCTAGTCGCC 60.959 60.000 0.00 0.00 0.00 5.54
341 342 1.004200 ACCCAAAACCTAGTCGCCG 60.004 57.895 0.00 0.00 0.00 6.46
342 343 2.396157 CCCAAAACCTAGTCGCCGC 61.396 63.158 0.00 0.00 0.00 6.53
343 344 2.396157 CCAAAACCTAGTCGCCGCC 61.396 63.158 0.00 0.00 0.00 6.13
344 345 1.669760 CAAAACCTAGTCGCCGCCA 60.670 57.895 0.00 0.00 0.00 5.69
345 346 1.375523 AAAACCTAGTCGCCGCCAG 60.376 57.895 0.00 0.00 0.00 4.85
346 347 2.798148 AAAACCTAGTCGCCGCCAGG 62.798 60.000 0.00 0.00 41.62 4.45
349 350 3.905678 CTAGTCGCCGCCAGGGAG 61.906 72.222 0.00 0.00 38.26 4.30
350 351 4.753662 TAGTCGCCGCCAGGGAGT 62.754 66.667 0.00 2.03 43.19 3.85
353 354 4.435970 TCGCCGCCAGGGAGTCTA 62.436 66.667 0.00 0.00 38.47 2.59
354 355 3.905678 CGCCGCCAGGGAGTCTAG 61.906 72.222 0.00 0.00 38.47 2.43
355 356 3.541713 GCCGCCAGGGAGTCTAGG 61.542 72.222 0.00 0.00 38.47 3.02
356 357 2.840102 CCGCCAGGGAGTCTAGGG 60.840 72.222 0.00 0.00 38.47 3.53
357 358 2.042843 CGCCAGGGAGTCTAGGGT 60.043 66.667 0.00 0.00 0.00 4.34
358 359 1.686110 CGCCAGGGAGTCTAGGGTT 60.686 63.158 0.00 0.00 0.00 4.11
359 360 1.265454 CGCCAGGGAGTCTAGGGTTT 61.265 60.000 0.00 0.00 0.00 3.27
360 361 1.875488 GCCAGGGAGTCTAGGGTTTA 58.125 55.000 0.00 0.00 0.00 2.01
361 362 1.763545 GCCAGGGAGTCTAGGGTTTAG 59.236 57.143 0.00 0.00 0.00 1.85
362 363 2.626149 GCCAGGGAGTCTAGGGTTTAGA 60.626 54.545 0.00 0.00 0.00 2.10
363 364 3.301274 CCAGGGAGTCTAGGGTTTAGAG 58.699 54.545 0.00 0.00 0.00 2.43
364 365 3.301274 CAGGGAGTCTAGGGTTTAGAGG 58.699 54.545 0.00 0.00 0.00 3.69
365 366 3.052793 CAGGGAGTCTAGGGTTTAGAGGA 60.053 52.174 0.00 0.00 0.00 3.71
366 367 3.601537 AGGGAGTCTAGGGTTTAGAGGAA 59.398 47.826 0.00 0.00 0.00 3.36
367 368 4.046876 AGGGAGTCTAGGGTTTAGAGGAAA 59.953 45.833 0.00 0.00 0.00 3.13
368 369 4.161942 GGGAGTCTAGGGTTTAGAGGAAAC 59.838 50.000 0.00 0.00 45.80 2.78
386 387 7.560796 AGGAAACCTACCTCTATCATAATGG 57.439 40.000 0.00 0.00 31.43 3.16
387 388 6.502158 AGGAAACCTACCTCTATCATAATGGG 59.498 42.308 0.00 0.00 31.43 4.00
388 389 5.763876 AACCTACCTCTATCATAATGGGC 57.236 43.478 0.00 0.00 0.00 5.36
389 390 5.029973 ACCTACCTCTATCATAATGGGCT 57.970 43.478 0.00 0.00 0.00 5.19
390 391 5.415961 ACCTACCTCTATCATAATGGGCTT 58.584 41.667 0.00 0.00 0.00 4.35
391 392 5.485708 ACCTACCTCTATCATAATGGGCTTC 59.514 44.000 0.00 0.00 0.00 3.86
392 393 5.485353 CCTACCTCTATCATAATGGGCTTCA 59.515 44.000 0.00 0.00 0.00 3.02
393 394 5.495926 ACCTCTATCATAATGGGCTTCAG 57.504 43.478 0.00 0.00 0.00 3.02
394 395 4.260170 CCTCTATCATAATGGGCTTCAGC 58.740 47.826 0.00 0.00 41.14 4.26
395 396 4.019501 CCTCTATCATAATGGGCTTCAGCT 60.020 45.833 0.00 0.00 41.70 4.24
396 397 4.903054 TCTATCATAATGGGCTTCAGCTG 58.097 43.478 7.63 7.63 41.70 4.24
397 398 3.870538 ATCATAATGGGCTTCAGCTGA 57.129 42.857 13.74 13.74 41.70 4.26
398 399 2.923121 TCATAATGGGCTTCAGCTGAC 58.077 47.619 18.03 5.76 41.70 3.51
399 400 1.952296 CATAATGGGCTTCAGCTGACC 59.048 52.381 18.03 15.51 41.70 4.02
400 401 0.107703 TAATGGGCTTCAGCTGACCG 60.108 55.000 18.03 11.88 41.70 4.79
401 402 3.984193 ATGGGCTTCAGCTGACCGC 62.984 63.158 18.03 20.96 41.70 5.68
402 403 4.704833 GGGCTTCAGCTGACCGCA 62.705 66.667 28.42 11.60 42.61 5.69
403 404 3.426568 GGCTTCAGCTGACCGCAC 61.427 66.667 28.42 18.41 42.61 5.34
404 405 2.666190 GCTTCAGCTGACCGCACA 60.666 61.111 24.75 7.67 42.61 4.57
405 406 2.037136 GCTTCAGCTGACCGCACAT 61.037 57.895 24.75 0.00 42.61 3.21
406 407 1.792301 CTTCAGCTGACCGCACATG 59.208 57.895 18.03 0.00 42.61 3.21
407 408 0.671472 CTTCAGCTGACCGCACATGA 60.671 55.000 18.03 0.00 42.61 3.07
408 409 0.036105 TTCAGCTGACCGCACATGAT 60.036 50.000 18.03 0.00 42.61 2.45
409 410 0.036105 TCAGCTGACCGCACATGATT 60.036 50.000 13.74 0.00 42.61 2.57
410 411 0.806868 CAGCTGACCGCACATGATTT 59.193 50.000 8.42 0.00 42.61 2.17
411 412 0.806868 AGCTGACCGCACATGATTTG 59.193 50.000 0.00 0.00 42.61 2.32
412 413 0.804364 GCTGACCGCACATGATTTGA 59.196 50.000 0.00 0.00 38.92 2.69
413 414 1.466360 GCTGACCGCACATGATTTGAC 60.466 52.381 0.00 0.00 38.92 3.18
414 415 0.795698 TGACCGCACATGATTTGACG 59.204 50.000 0.00 0.00 0.00 4.35
415 416 0.796312 GACCGCACATGATTTGACGT 59.204 50.000 0.00 0.00 0.00 4.34
416 417 1.996898 GACCGCACATGATTTGACGTA 59.003 47.619 0.00 0.00 0.00 3.57
417 418 2.607635 GACCGCACATGATTTGACGTAT 59.392 45.455 0.00 0.00 0.00 3.06
418 419 2.351418 ACCGCACATGATTTGACGTATG 59.649 45.455 0.00 0.00 0.00 2.39
419 420 2.607180 CCGCACATGATTTGACGTATGA 59.393 45.455 0.00 0.00 0.00 2.15
420 421 3.544048 CCGCACATGATTTGACGTATGAC 60.544 47.826 0.00 0.00 0.00 3.06
421 422 3.306973 CGCACATGATTTGACGTATGACT 59.693 43.478 0.00 0.00 0.00 3.41
422 423 4.201714 CGCACATGATTTGACGTATGACTT 60.202 41.667 0.00 0.00 0.00 3.01
423 424 5.631026 GCACATGATTTGACGTATGACTTT 58.369 37.500 0.00 0.00 0.00 2.66
424 425 5.734498 GCACATGATTTGACGTATGACTTTC 59.266 40.000 0.00 0.00 0.00 2.62
425 426 6.250819 CACATGATTTGACGTATGACTTTCC 58.749 40.000 0.00 0.00 0.00 3.13
426 427 6.092670 CACATGATTTGACGTATGACTTTCCT 59.907 38.462 0.00 0.00 0.00 3.36
427 428 6.092670 ACATGATTTGACGTATGACTTTCCTG 59.907 38.462 0.00 0.00 0.00 3.86
428 429 5.547465 TGATTTGACGTATGACTTTCCTGT 58.453 37.500 0.00 0.00 0.00 4.00
429 430 5.637810 TGATTTGACGTATGACTTTCCTGTC 59.362 40.000 0.00 0.00 37.47 3.51
430 431 3.211803 TGACGTATGACTTTCCTGTCG 57.788 47.619 0.00 0.00 39.64 4.35
431 432 2.555325 TGACGTATGACTTTCCTGTCGT 59.445 45.455 0.00 0.00 39.64 4.34
432 433 3.005050 TGACGTATGACTTTCCTGTCGTT 59.995 43.478 0.00 0.00 39.64 3.85
433 434 3.314553 ACGTATGACTTTCCTGTCGTTG 58.685 45.455 0.00 0.00 39.64 4.10
434 435 2.666508 CGTATGACTTTCCTGTCGTTGG 59.333 50.000 0.00 0.00 39.64 3.77
435 436 1.523758 ATGACTTTCCTGTCGTTGGC 58.476 50.000 0.00 0.00 39.64 4.52
436 437 0.179234 TGACTTTCCTGTCGTTGGCA 59.821 50.000 0.00 0.00 39.64 4.92
474 475 4.511636 GCCACAGCTCTCACTAGC 57.488 61.111 0.00 0.00 43.11 3.42
483 484 1.922444 GCTCTCACTAGCGATACGTGC 60.922 57.143 0.00 0.00 31.76 5.34
516 517 3.781307 TCGATCCAGGGGGCGTTG 61.781 66.667 0.00 0.00 0.00 4.10
531 532 1.069022 GCGTTGAGCTGAATTGCTGAA 60.069 47.619 0.00 0.00 44.17 3.02
546 547 1.406539 GCTGAACGGCCAATCAATCAT 59.593 47.619 2.24 0.00 0.00 2.45
660 665 3.064324 GTTGCTTGCGGCTCCCAT 61.064 61.111 0.00 0.00 42.39 4.00
698 703 2.813301 GCGTTTTCTATAGCGCGTAG 57.187 50.000 8.43 14.35 40.46 3.51
714 719 1.001764 TAGCGTGGAGGGAGAACGA 60.002 57.895 0.00 0.00 39.64 3.85
718 723 1.171308 CGTGGAGGGAGAACGAAGTA 58.829 55.000 0.00 0.00 45.00 2.24
764 769 4.124851 AGTTCGTCACAAGTCAAGTCTT 57.875 40.909 0.00 0.00 0.00 3.01
823 828 3.136123 CCCATGCTTCACGGGCAG 61.136 66.667 0.00 0.00 43.15 4.85
840 845 2.813908 GACCACATGCGGACGGAC 60.814 66.667 6.80 0.00 0.00 4.79
859 864 1.067142 ACCGCGTGCATATATAGTGGG 60.067 52.381 4.92 0.00 36.84 4.61
891 896 1.727467 AACTTGGCAGTTGACACGC 59.273 52.632 2.25 0.00 42.05 5.34
892 897 1.029408 AACTTGGCAGTTGACACGCA 61.029 50.000 2.25 0.00 42.05 5.24
893 898 1.280746 CTTGGCAGTTGACACGCAG 59.719 57.895 0.00 0.00 29.05 5.18
895 900 1.029408 TTGGCAGTTGACACGCAGTT 61.029 50.000 0.00 0.00 41.61 3.16
897 902 1.436195 GGCAGTTGACACGCAGTTCA 61.436 55.000 0.00 0.00 41.61 3.18
898 903 0.041839 GCAGTTGACACGCAGTTCAG 60.042 55.000 0.00 0.00 41.61 3.02
899 904 0.041839 CAGTTGACACGCAGTTCAGC 60.042 55.000 0.00 0.00 41.61 4.26
900 905 0.179073 AGTTGACACGCAGTTCAGCT 60.179 50.000 0.00 0.00 41.61 4.24
901 906 1.068588 AGTTGACACGCAGTTCAGCTA 59.931 47.619 0.00 0.00 41.61 3.32
902 907 1.457303 GTTGACACGCAGTTCAGCTAG 59.543 52.381 0.00 0.00 41.61 3.42
905 910 0.389166 ACACGCAGTTCAGCTAGCTC 60.389 55.000 16.15 3.70 41.61 4.09
906 911 1.080995 CACGCAGTTCAGCTAGCTCC 61.081 60.000 16.15 5.84 41.61 4.70
907 912 1.254284 ACGCAGTTCAGCTAGCTCCT 61.254 55.000 16.15 8.29 37.78 3.69
908 913 0.805322 CGCAGTTCAGCTAGCTCCTG 60.805 60.000 16.15 20.34 0.00 3.86
909 914 0.248843 GCAGTTCAGCTAGCTCCTGT 59.751 55.000 25.20 8.36 0.00 4.00
910 915 1.338579 GCAGTTCAGCTAGCTCCTGTT 60.339 52.381 25.20 7.98 0.00 3.16
911 916 2.873649 GCAGTTCAGCTAGCTCCTGTTT 60.874 50.000 25.20 7.13 0.00 2.83
926 931 5.508200 TCCTGTTTGTACATTTGTCAACC 57.492 39.130 0.00 0.00 32.86 3.77
963 969 0.754472 ACGTCGAAGAACTCCCCAAA 59.246 50.000 5.05 0.00 39.69 3.28
981 987 4.471726 CCGTCGAGGGACCGAACG 62.472 72.222 19.44 0.00 40.51 3.95
984 990 3.296836 TCGAGGGACCGAACGCAA 61.297 61.111 0.00 0.00 35.42 4.85
1014 1020 5.503520 GCCAAGCAATATGACGGTAAGTAAC 60.504 44.000 0.00 0.00 0.00 2.50
1025 1031 2.502538 CGGTAAGTAACCCAATCTCCCA 59.497 50.000 0.00 0.00 46.62 4.37
1034 1040 1.486310 CCCAATCTCCCATCTCACGAA 59.514 52.381 0.00 0.00 0.00 3.85
1108 1114 0.622136 TGATGATGCTGCCTTGGTCT 59.378 50.000 0.00 0.00 0.00 3.85
1121 1127 0.911769 TTGGTCTATCACCTGCCAGG 59.088 55.000 9.83 9.83 46.98 4.45
1231 1237 7.039853 CCACTAGCTTTCTATCTGAGATCATGA 60.040 40.741 0.00 0.00 32.88 3.07
1232 1238 8.024865 CACTAGCTTTCTATCTGAGATCATGAG 58.975 40.741 0.00 0.00 32.88 2.90
1233 1239 6.349243 AGCTTTCTATCTGAGATCATGAGG 57.651 41.667 0.00 0.00 32.88 3.86
1277 1283 1.852633 TGACGGTGATCTGATCTGGT 58.147 50.000 17.82 12.41 0.00 4.00
1482 1488 4.404098 CACCAGTACCACCCGGGC 62.404 72.222 24.08 2.97 42.05 6.13
1630 1636 3.499048 GATTACTTCAGCGACGAGAACA 58.501 45.455 0.00 0.00 0.00 3.18
1632 1638 0.660595 ACTTCAGCGACGAGAACACG 60.661 55.000 0.00 0.00 39.31 4.49
1644 1650 3.240134 GAACACGGGAGGCTGCTCA 62.240 63.158 5.84 0.00 0.00 4.26
1675 1681 6.893958 GATCCACACGATCATAATATGGAC 57.106 41.667 0.00 0.00 45.92 4.02
1820 1832 3.408229 CCATCTGAGTGGCACCCT 58.592 61.111 15.27 0.00 31.43 4.34
1845 1857 1.268032 CCGAACGGAACAATATGCTGC 60.268 52.381 7.53 0.00 37.50 5.25
1854 1866 3.077484 ACAATATGCTGCTGTTCCTGT 57.923 42.857 0.00 0.00 0.00 4.00
1855 1867 3.012518 ACAATATGCTGCTGTTCCTGTC 58.987 45.455 0.00 0.00 0.00 3.51
1856 1868 3.276857 CAATATGCTGCTGTTCCTGTCT 58.723 45.455 0.00 0.00 0.00 3.41
1857 1869 2.680312 TATGCTGCTGTTCCTGTCTC 57.320 50.000 0.00 0.00 0.00 3.36
1858 1870 0.035630 ATGCTGCTGTTCCTGTCTCC 60.036 55.000 0.00 0.00 0.00 3.71
1859 1871 1.123861 TGCTGCTGTTCCTGTCTCCT 61.124 55.000 0.00 0.00 0.00 3.69
1860 1872 0.673022 GCTGCTGTTCCTGTCTCCTG 60.673 60.000 0.00 0.00 0.00 3.86
1864 1876 0.322975 CTGTTCCTGTCTCCTGTGGG 59.677 60.000 0.00 0.00 0.00 4.61
1878 1890 1.280710 CTGTGGGGTGCCACTATACAA 59.719 52.381 0.00 0.00 40.92 2.41
1879 1891 1.003812 TGTGGGGTGCCACTATACAAC 59.996 52.381 0.00 0.00 40.92 3.32
1880 1892 0.621609 TGGGGTGCCACTATACAACC 59.378 55.000 0.00 0.00 43.31 3.77
1881 1893 0.621609 GGGGTGCCACTATACAACCA 59.378 55.000 0.00 0.00 46.01 3.67
1882 1894 1.004979 GGGGTGCCACTATACAACCAA 59.995 52.381 0.00 0.00 46.01 3.67
1883 1895 2.357777 GGGGTGCCACTATACAACCAAT 60.358 50.000 0.00 0.00 46.01 3.16
1884 1896 3.117813 GGGGTGCCACTATACAACCAATA 60.118 47.826 0.00 0.00 46.01 1.90
1885 1897 3.881089 GGGTGCCACTATACAACCAATAC 59.119 47.826 0.00 0.00 43.52 1.89
1897 1909 5.186996 ACAACCAATACAAGCAACTTCAG 57.813 39.130 0.00 0.00 0.00 3.02
1925 1937 6.750039 CGGATTGGTGGTACAAAAATGTAATC 59.250 38.462 0.00 0.00 44.16 1.75
1928 1940 9.705290 GATTGGTGGTACAAAAATGTAATCTTT 57.295 29.630 0.00 0.00 44.16 2.52
1954 1966 3.316308 GCTGCCATAGTTTATTCCCTGTG 59.684 47.826 0.00 0.00 0.00 3.66
1996 2008 2.787473 TCATCCAACTCACCATCCAC 57.213 50.000 0.00 0.00 0.00 4.02
2008 2020 0.465460 CCATCCACCCATACCGTTGG 60.465 60.000 0.00 0.00 36.46 3.77
2029 2041 0.539051 AAGAATGCACTAGCTCGGCT 59.461 50.000 0.00 3.87 43.41 5.52
2048 2060 0.251916 TGGTTAGGGCATCTCCAACG 59.748 55.000 0.00 0.00 36.21 4.10
2055 2067 2.264480 CATCTCCAACGCCGACCA 59.736 61.111 0.00 0.00 0.00 4.02
2063 2075 1.228003 AACGCCGACCATCAAACCA 60.228 52.632 0.00 0.00 0.00 3.67
2065 2077 1.963855 CGCCGACCATCAAACCACA 60.964 57.895 0.00 0.00 0.00 4.17
2085 2097 0.731514 CGCATACGTCTGAACCGTGT 60.732 55.000 4.94 0.00 39.22 4.49
2089 2101 2.582728 TACGTCTGAACCGTGTTGTT 57.417 45.000 0.00 0.00 39.22 2.83
2103 2115 3.185594 CGTGTTGTTCGGATATGTTGTGT 59.814 43.478 0.00 0.00 0.00 3.72
2163 2175 1.333619 GACGCACTTTCTCCTGCAAAA 59.666 47.619 0.00 0.00 32.57 2.44
2165 2177 1.600413 CGCACTTTCTCCTGCAAAACC 60.600 52.381 0.00 0.00 32.57 3.27
2166 2178 1.408702 GCACTTTCTCCTGCAAAACCA 59.591 47.619 0.00 0.00 33.31 3.67
2167 2179 2.799562 GCACTTTCTCCTGCAAAACCAC 60.800 50.000 0.00 0.00 33.31 4.16
2168 2180 2.426738 CACTTTCTCCTGCAAAACCACA 59.573 45.455 0.00 0.00 0.00 4.17
2169 2181 2.689983 ACTTTCTCCTGCAAAACCACAG 59.310 45.455 0.00 0.00 0.00 3.66
2170 2182 2.727123 TTCTCCTGCAAAACCACAGA 57.273 45.000 0.00 0.00 35.90 3.41
2171 2183 1.967319 TCTCCTGCAAAACCACAGAC 58.033 50.000 0.00 0.00 35.90 3.51
2174 2186 0.670162 CCTGCAAAACCACAGACAGG 59.330 55.000 0.00 0.00 38.81 4.00
2175 2187 0.031178 CTGCAAAACCACAGACAGGC 59.969 55.000 0.00 0.00 35.90 4.85
2177 2189 1.724582 GCAAAACCACAGACAGGCGT 61.725 55.000 0.00 0.00 0.00 5.68
2178 2190 0.738389 CAAAACCACAGACAGGCGTT 59.262 50.000 0.00 0.00 0.00 4.84
2196 2210 4.966787 GGGGCTTTGTGGCGTCCA 62.967 66.667 0.00 0.00 42.84 4.02
2198 2212 2.281484 GGCTTTGTGGCGTCCAGA 60.281 61.111 0.00 0.00 32.34 3.86
2202 2216 2.989055 CTTTGTGGCGTCCAGACCGT 62.989 60.000 0.00 0.00 32.34 4.83
2205 2219 3.542676 TGGCGTCCAGACCGTTGT 61.543 61.111 0.00 0.00 0.00 3.32
2212 2226 2.029073 CAGACCGTTGTCACGCCT 59.971 61.111 0.00 0.00 45.72 5.52
2232 2246 3.311110 GTCTGACCGCCCTGACCA 61.311 66.667 0.00 0.00 0.00 4.02
2233 2247 3.311110 TCTGACCGCCCTGACCAC 61.311 66.667 0.00 0.00 0.00 4.16
2277 2291 1.239347 GTGCACTTCCCTCCTGAAAC 58.761 55.000 10.32 0.00 0.00 2.78
2278 2292 0.843309 TGCACTTCCCTCCTGAAACA 59.157 50.000 0.00 0.00 0.00 2.83
2281 2295 2.749800 GCACTTCCCTCCTGAAACAGTT 60.750 50.000 0.00 0.00 0.00 3.16
2283 2297 4.807643 GCACTTCCCTCCTGAAACAGTTAT 60.808 45.833 0.00 0.00 0.00 1.89
2288 2302 2.354704 CCTCCTGAAACAGTTATCGCCA 60.355 50.000 0.00 0.00 0.00 5.69
2296 2310 1.204941 ACAGTTATCGCCACTCCAGAC 59.795 52.381 0.00 0.00 0.00 3.51
2299 2313 2.292794 TTATCGCCACTCCAGACCGC 62.293 60.000 0.00 0.00 0.00 5.68
2307 2321 2.523168 TCCAGACCGCCAGTGTCA 60.523 61.111 0.00 0.00 35.15 3.58
2320 2334 0.036732 AGTGTCACATTCATGCCCGT 59.963 50.000 5.62 0.00 0.00 5.28
2327 2341 1.153086 ATTCATGCCCGTCCAGAGC 60.153 57.895 0.00 0.00 0.00 4.09
2344 2358 4.436998 CGGACACGGCCTCTCACC 62.437 72.222 0.00 0.00 36.18 4.02
2411 2428 3.858868 TTCCCAGTGCACGCGACTC 62.859 63.158 15.93 5.40 0.00 3.36
2463 2485 1.095228 CGTCTGCCGCCCACATTAAT 61.095 55.000 0.00 0.00 0.00 1.40
2465 2487 0.751277 TCTGCCGCCCACATTAATGG 60.751 55.000 19.37 4.25 39.71 3.16
2477 2499 1.312371 ATTAATGGCACGCGGTTGCT 61.312 50.000 19.41 4.68 42.56 3.91
2490 2512 1.002087 CGGTTGCTGAGGAACCTACTT 59.998 52.381 29.06 0.00 40.77 2.24
2492 2514 2.038557 GGTTGCTGAGGAACCTACTTCA 59.961 50.000 26.04 0.00 39.94 3.02
2499 2521 2.769095 GAGGAACCTACTTCAGCTCCAT 59.231 50.000 0.00 0.00 30.52 3.41
2505 2527 2.428890 CCTACTTCAGCTCCATTCGTCT 59.571 50.000 0.00 0.00 0.00 4.18
2517 2539 0.616111 ATTCGTCTGTCCCTCTGCCT 60.616 55.000 0.00 0.00 0.00 4.75
2519 2541 1.680651 CGTCTGTCCCTCTGCCTCT 60.681 63.158 0.00 0.00 0.00 3.69
2559 2582 3.077359 GCTATATAAACTGCAGCCCCAG 58.923 50.000 15.27 3.34 38.78 4.45
2572 2595 1.151450 CCCCAGCCATAGCCGAATT 59.849 57.895 0.00 0.00 41.25 2.17
2573 2596 0.468029 CCCCAGCCATAGCCGAATTT 60.468 55.000 0.00 0.00 41.25 1.82
2578 2601 3.411446 CAGCCATAGCCGAATTTATCCA 58.589 45.455 0.00 0.00 41.25 3.41
2584 2607 1.202651 AGCCGAATTTATCCACCTCCG 60.203 52.381 0.00 0.00 0.00 4.63
2614 2637 1.227089 CTCTTCCGCATCACTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
2621 2644 2.910360 CATCACTCCCGCCATGGA 59.090 61.111 18.40 0.00 42.00 3.41
2625 2648 2.039624 ACTCCCGCCATGGACTCT 59.960 61.111 18.40 0.00 42.00 3.24
2638 2661 0.949105 GGACTCTTCGCGCTCCAAAA 60.949 55.000 5.56 0.00 0.00 2.44
2643 2666 0.868406 CTTCGCGCTCCAAAACTCTT 59.132 50.000 5.56 0.00 0.00 2.85
2644 2667 1.264288 CTTCGCGCTCCAAAACTCTTT 59.736 47.619 5.56 0.00 0.00 2.52
2645 2668 0.586319 TCGCGCTCCAAAACTCTTTG 59.414 50.000 5.56 0.00 41.45 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.846973 CCTAGGGGGCTGGAATTCC 59.153 63.158 18.17 18.17 0.00 3.01
19 20 0.035820 TACGTCCTGCATGGGGAAAC 60.036 55.000 0.00 0.00 34.35 2.78
20 21 0.693622 TTACGTCCTGCATGGGGAAA 59.306 50.000 0.00 0.00 34.35 3.13
21 22 0.251916 CTTACGTCCTGCATGGGGAA 59.748 55.000 0.00 0.00 34.35 3.97
22 23 1.622607 CCTTACGTCCTGCATGGGGA 61.623 60.000 0.00 0.00 36.20 4.81
23 24 1.153168 CCTTACGTCCTGCATGGGG 60.153 63.158 0.00 0.00 36.20 4.96
24 25 0.744414 CACCTTACGTCCTGCATGGG 60.744 60.000 0.00 0.00 36.20 4.00
25 26 0.036388 ACACCTTACGTCCTGCATGG 60.036 55.000 0.00 0.00 37.10 3.66
26 27 1.464608 CAACACCTTACGTCCTGCATG 59.535 52.381 0.00 0.00 0.00 4.06
27 28 1.808411 CAACACCTTACGTCCTGCAT 58.192 50.000 0.00 0.00 0.00 3.96
28 29 0.882927 GCAACACCTTACGTCCTGCA 60.883 55.000 0.00 0.00 31.87 4.41
29 30 0.882927 TGCAACACCTTACGTCCTGC 60.883 55.000 0.00 0.00 32.10 4.85
30 31 1.148310 CTGCAACACCTTACGTCCTG 58.852 55.000 0.00 0.00 0.00 3.86
31 32 1.045407 TCTGCAACACCTTACGTCCT 58.955 50.000 0.00 0.00 0.00 3.85
32 33 2.000447 GATCTGCAACACCTTACGTCC 59.000 52.381 0.00 0.00 0.00 4.79
33 34 1.654105 CGATCTGCAACACCTTACGTC 59.346 52.381 0.00 0.00 0.00 4.34
34 35 1.000506 ACGATCTGCAACACCTTACGT 59.999 47.619 0.00 0.00 0.00 3.57
35 36 1.710013 ACGATCTGCAACACCTTACG 58.290 50.000 0.00 0.00 0.00 3.18
36 37 3.250040 ACAAACGATCTGCAACACCTTAC 59.750 43.478 0.00 0.00 0.00 2.34
37 38 3.472652 ACAAACGATCTGCAACACCTTA 58.527 40.909 0.00 0.00 0.00 2.69
38 39 2.297701 ACAAACGATCTGCAACACCTT 58.702 42.857 0.00 0.00 0.00 3.50
39 40 1.967319 ACAAACGATCTGCAACACCT 58.033 45.000 0.00 0.00 0.00 4.00
40 41 3.188460 ACATACAAACGATCTGCAACACC 59.812 43.478 0.00 0.00 0.00 4.16
41 42 4.151070 CACATACAAACGATCTGCAACAC 58.849 43.478 0.00 0.00 0.00 3.32
42 43 3.188254 CCACATACAAACGATCTGCAACA 59.812 43.478 0.00 0.00 0.00 3.33
43 44 3.435327 TCCACATACAAACGATCTGCAAC 59.565 43.478 0.00 0.00 0.00 4.17
44 45 3.669536 TCCACATACAAACGATCTGCAA 58.330 40.909 0.00 0.00 0.00 4.08
45 46 3.261580 CTCCACATACAAACGATCTGCA 58.738 45.455 0.00 0.00 0.00 4.41
46 47 2.609459 CCTCCACATACAAACGATCTGC 59.391 50.000 0.00 0.00 0.00 4.26
47 48 4.115516 CTCCTCCACATACAAACGATCTG 58.884 47.826 0.00 0.00 0.00 2.90
48 49 4.023980 TCTCCTCCACATACAAACGATCT 58.976 43.478 0.00 0.00 0.00 2.75
49 50 4.386867 TCTCCTCCACATACAAACGATC 57.613 45.455 0.00 0.00 0.00 3.69
50 51 5.359194 AATCTCCTCCACATACAAACGAT 57.641 39.130 0.00 0.00 0.00 3.73
51 52 4.382685 GGAATCTCCTCCACATACAAACGA 60.383 45.833 0.00 0.00 35.36 3.85
52 53 3.871594 GGAATCTCCTCCACATACAAACG 59.128 47.826 0.00 0.00 35.36 3.60
53 54 3.871594 CGGAATCTCCTCCACATACAAAC 59.128 47.826 0.00 0.00 34.91 2.93
54 55 3.118408 CCGGAATCTCCTCCACATACAAA 60.118 47.826 0.00 0.00 34.91 2.83
55 56 2.434336 CCGGAATCTCCTCCACATACAA 59.566 50.000 0.00 0.00 34.91 2.41
56 57 2.039418 CCGGAATCTCCTCCACATACA 58.961 52.381 0.00 0.00 34.91 2.29
57 58 2.040178 ACCGGAATCTCCTCCACATAC 58.960 52.381 9.46 0.00 34.91 2.39
58 59 2.039418 CACCGGAATCTCCTCCACATA 58.961 52.381 9.46 0.00 34.91 2.29
59 60 0.833287 CACCGGAATCTCCTCCACAT 59.167 55.000 9.46 0.00 34.91 3.21
60 61 1.899437 GCACCGGAATCTCCTCCACA 61.899 60.000 9.46 0.00 34.91 4.17
61 62 1.153349 GCACCGGAATCTCCTCCAC 60.153 63.158 9.46 0.00 34.91 4.02
62 63 1.198094 TTGCACCGGAATCTCCTCCA 61.198 55.000 9.46 0.00 34.91 3.86
63 64 0.035439 TTTGCACCGGAATCTCCTCC 60.035 55.000 9.46 0.00 33.30 4.30
64 65 1.468914 GTTTTGCACCGGAATCTCCTC 59.531 52.381 9.46 0.00 33.30 3.71
65 66 1.534729 GTTTTGCACCGGAATCTCCT 58.465 50.000 9.46 0.00 33.30 3.69
66 67 0.526211 GGTTTTGCACCGGAATCTCC 59.474 55.000 9.46 0.00 35.12 3.71
75 76 3.289128 GCAAGGAAGGTTTTGCACC 57.711 52.632 4.48 0.00 46.72 5.01
78 79 0.752658 ACTGGCAAGGAAGGTTTTGC 59.247 50.000 0.00 0.81 46.76 3.68
79 80 2.029918 GCTACTGGCAAGGAAGGTTTTG 60.030 50.000 0.00 0.00 41.35 2.44
80 81 2.239400 GCTACTGGCAAGGAAGGTTTT 58.761 47.619 0.00 0.00 41.35 2.43
81 82 1.547901 GGCTACTGGCAAGGAAGGTTT 60.548 52.381 0.00 0.00 44.01 3.27
82 83 0.038310 GGCTACTGGCAAGGAAGGTT 59.962 55.000 0.00 0.00 44.01 3.50
83 84 1.133809 TGGCTACTGGCAAGGAAGGT 61.134 55.000 0.00 0.00 46.03 3.50
84 85 1.685224 TGGCTACTGGCAAGGAAGG 59.315 57.895 0.00 0.00 46.03 3.46
91 92 1.603455 GGCAAAGTGGCTACTGGCA 60.603 57.895 22.63 0.00 46.87 4.92
92 93 2.690778 CGGCAAAGTGGCTACTGGC 61.691 63.158 15.91 15.91 41.25 4.85
93 94 0.605319 TTCGGCAAAGTGGCTACTGG 60.605 55.000 2.40 0.12 41.25 4.00
94 95 0.798776 CTTCGGCAAAGTGGCTACTG 59.201 55.000 2.40 0.00 41.25 2.74
95 96 0.955919 GCTTCGGCAAAGTGGCTACT 60.956 55.000 0.00 0.00 41.25 2.57
96 97 1.502190 GCTTCGGCAAAGTGGCTAC 59.498 57.895 0.00 0.00 41.25 3.58
97 98 3.981308 GCTTCGGCAAAGTGGCTA 58.019 55.556 0.09 0.00 41.25 3.93
107 108 0.233332 GCTAACGATGATGCTTCGGC 59.767 55.000 7.47 0.00 40.83 5.54
108 109 0.504384 CGCTAACGATGATGCTTCGG 59.496 55.000 7.47 0.00 43.93 4.30
109 110 1.188138 GACGCTAACGATGATGCTTCG 59.812 52.381 0.00 0.00 43.93 3.79
110 111 1.188138 CGACGCTAACGATGATGCTTC 59.812 52.381 0.00 0.00 43.93 3.86
111 112 1.200483 CGACGCTAACGATGATGCTT 58.800 50.000 0.00 0.00 43.93 3.91
112 113 0.100682 ACGACGCTAACGATGATGCT 59.899 50.000 0.00 0.00 43.93 3.79
113 114 0.498927 GACGACGCTAACGATGATGC 59.501 55.000 0.00 0.00 43.93 3.91
114 115 0.764801 CGACGACGCTAACGATGATG 59.235 55.000 0.00 0.00 43.93 3.07
115 116 0.654160 TCGACGACGCTAACGATGAT 59.346 50.000 1.48 0.00 43.93 2.45
116 117 0.654160 ATCGACGACGCTAACGATGA 59.346 50.000 15.06 0.00 42.46 2.92
117 118 1.035772 GATCGACGACGCTAACGATG 58.964 55.000 18.71 0.00 43.72 3.84
118 119 0.654160 TGATCGACGACGCTAACGAT 59.346 50.000 15.51 15.51 45.77 3.73
119 120 0.247419 GTGATCGACGACGCTAACGA 60.247 55.000 0.00 2.06 43.93 3.85
121 122 0.179181 TGGTGATCGACGACGCTAAC 60.179 55.000 0.00 0.00 39.58 2.34
122 123 0.098200 CTGGTGATCGACGACGCTAA 59.902 55.000 0.00 0.00 39.58 3.09
123 124 0.741927 TCTGGTGATCGACGACGCTA 60.742 55.000 0.00 0.00 39.58 4.26
124 125 1.983196 CTCTGGTGATCGACGACGCT 61.983 60.000 0.00 0.00 39.58 5.07
125 126 1.583967 CTCTGGTGATCGACGACGC 60.584 63.158 0.00 0.97 39.58 5.19
126 127 1.062685 CCTCTGGTGATCGACGACG 59.937 63.158 0.00 0.00 41.26 5.12
127 128 1.226717 GCCTCTGGTGATCGACGAC 60.227 63.158 0.00 0.00 0.00 4.34
128 129 2.761195 CGCCTCTGGTGATCGACGA 61.761 63.158 0.00 0.00 34.74 4.20
129 130 2.278206 CGCCTCTGGTGATCGACG 60.278 66.667 0.00 0.00 34.74 5.12
130 131 1.078759 CAACGCCTCTGGTGATCGAC 61.079 60.000 4.02 0.00 36.58 4.20
131 132 1.215382 CAACGCCTCTGGTGATCGA 59.785 57.895 4.02 0.00 36.58 3.59
132 133 2.456119 GCAACGCCTCTGGTGATCG 61.456 63.158 4.02 0.00 36.58 3.69
133 134 2.109126 GGCAACGCCTCTGGTGATC 61.109 63.158 4.02 0.00 46.69 2.92
134 135 2.045926 GGCAACGCCTCTGGTGAT 60.046 61.111 4.02 0.00 46.69 3.06
144 145 4.821589 CCGAGGAGGAGGCAACGC 62.822 72.222 0.00 0.00 45.00 4.84
145 146 3.068691 TCCGAGGAGGAGGCAACG 61.069 66.667 0.00 0.00 45.98 4.10
153 154 1.743321 GCTGGACATCTCCGAGGAGG 61.743 65.000 18.16 6.58 42.20 4.30
154 155 0.754957 AGCTGGACATCTCCGAGGAG 60.755 60.000 12.78 12.78 39.88 3.69
155 156 0.324738 AAGCTGGACATCTCCGAGGA 60.325 55.000 0.00 0.00 39.88 3.71
156 157 0.179089 CAAGCTGGACATCTCCGAGG 60.179 60.000 0.00 0.00 39.88 4.63
157 158 0.809241 GCAAGCTGGACATCTCCGAG 60.809 60.000 0.00 0.00 39.88 4.63
158 159 1.219124 GCAAGCTGGACATCTCCGA 59.781 57.895 0.00 0.00 39.88 4.55
159 160 1.817099 GGCAAGCTGGACATCTCCG 60.817 63.158 0.00 0.00 39.88 4.63
160 161 1.817099 CGGCAAGCTGGACATCTCC 60.817 63.158 0.00 0.00 37.04 3.71
161 162 0.809241 CTCGGCAAGCTGGACATCTC 60.809 60.000 0.00 0.00 0.00 2.75
162 163 1.220206 CTCGGCAAGCTGGACATCT 59.780 57.895 0.00 0.00 0.00 2.90
163 164 1.078848 ACTCGGCAAGCTGGACATC 60.079 57.895 0.00 0.00 0.00 3.06
164 165 1.376424 CACTCGGCAAGCTGGACAT 60.376 57.895 0.00 0.00 0.00 3.06
165 166 2.031012 CACTCGGCAAGCTGGACA 59.969 61.111 0.00 0.00 0.00 4.02
166 167 3.426568 GCACTCGGCAAGCTGGAC 61.427 66.667 0.00 0.00 43.97 4.02
180 181 2.202987 CGCAGATGGAGGAGGCAC 60.203 66.667 0.00 0.00 0.00 5.01
181 182 4.166888 GCGCAGATGGAGGAGGCA 62.167 66.667 0.30 0.00 0.00 4.75
182 183 4.925861 GGCGCAGATGGAGGAGGC 62.926 72.222 10.83 0.00 0.00 4.70
183 184 4.247380 GGGCGCAGATGGAGGAGG 62.247 72.222 10.83 0.00 0.00 4.30
184 185 4.598894 CGGGCGCAGATGGAGGAG 62.599 72.222 10.83 0.00 0.00 3.69
203 204 2.913060 ACTATCCCCTCGCTCCGC 60.913 66.667 0.00 0.00 0.00 5.54
204 205 3.043419 CACTATCCCCTCGCTCCG 58.957 66.667 0.00 0.00 0.00 4.63
205 206 2.134287 TGCACTATCCCCTCGCTCC 61.134 63.158 0.00 0.00 0.00 4.70
206 207 1.068250 GTGCACTATCCCCTCGCTC 59.932 63.158 10.32 0.00 0.00 5.03
207 208 2.435693 GGTGCACTATCCCCTCGCT 61.436 63.158 17.98 0.00 0.00 4.93
208 209 2.109181 GGTGCACTATCCCCTCGC 59.891 66.667 17.98 0.00 0.00 5.03
209 210 2.417516 CGGTGCACTATCCCCTCG 59.582 66.667 17.98 5.08 0.00 4.63
210 211 2.109181 GCGGTGCACTATCCCCTC 59.891 66.667 17.98 0.00 0.00 4.30
211 212 2.365635 AGCGGTGCACTATCCCCT 60.366 61.111 17.98 0.00 0.00 4.79
212 213 2.109181 GAGCGGTGCACTATCCCC 59.891 66.667 17.98 0.00 0.00 4.81
213 214 2.109181 GGAGCGGTGCACTATCCC 59.891 66.667 17.98 9.72 0.00 3.85
214 215 1.068250 GAGGAGCGGTGCACTATCC 59.932 63.158 17.98 19.76 0.00 2.59
215 216 0.461961 AAGAGGAGCGGTGCACTATC 59.538 55.000 17.98 11.87 0.00 2.08
216 217 0.461961 GAAGAGGAGCGGTGCACTAT 59.538 55.000 17.98 2.46 0.00 2.12
217 218 1.605058 GGAAGAGGAGCGGTGCACTA 61.605 60.000 17.98 0.00 0.00 2.74
218 219 2.659610 GAAGAGGAGCGGTGCACT 59.340 61.111 17.98 4.24 0.00 4.40
219 220 2.435059 GGAAGAGGAGCGGTGCAC 60.435 66.667 8.80 8.80 0.00 4.57
220 221 2.515979 TTGGAAGAGGAGCGGTGCA 61.516 57.895 9.30 0.00 0.00 4.57
221 222 2.035442 GTTGGAAGAGGAGCGGTGC 61.035 63.158 0.00 0.00 0.00 5.01
222 223 1.376037 GGTTGGAAGAGGAGCGGTG 60.376 63.158 0.00 0.00 0.00 4.94
223 224 1.128188 AAGGTTGGAAGAGGAGCGGT 61.128 55.000 0.00 0.00 0.00 5.68
224 225 0.036875 AAAGGTTGGAAGAGGAGCGG 59.963 55.000 0.00 0.00 0.00 5.52
225 226 1.160137 CAAAGGTTGGAAGAGGAGCG 58.840 55.000 0.00 0.00 0.00 5.03
226 227 0.884514 GCAAAGGTTGGAAGAGGAGC 59.115 55.000 0.00 0.00 0.00 4.70
227 228 1.539157 GGCAAAGGTTGGAAGAGGAG 58.461 55.000 0.00 0.00 0.00 3.69
228 229 0.250727 CGGCAAAGGTTGGAAGAGGA 60.251 55.000 0.00 0.00 0.00 3.71
229 230 1.244019 CCGGCAAAGGTTGGAAGAGG 61.244 60.000 0.00 0.00 0.00 3.69
230 231 1.866853 GCCGGCAAAGGTTGGAAGAG 61.867 60.000 24.80 0.00 0.00 2.85
231 232 1.901464 GCCGGCAAAGGTTGGAAGA 60.901 57.895 24.80 0.00 0.00 2.87
232 233 2.146073 CTGCCGGCAAAGGTTGGAAG 62.146 60.000 32.09 10.83 0.00 3.46
233 234 2.123683 TGCCGGCAAAGGTTGGAA 60.124 55.556 30.74 0.00 0.00 3.53
234 235 2.597217 CTGCCGGCAAAGGTTGGA 60.597 61.111 32.09 3.44 0.00 3.53
235 236 4.362476 GCTGCCGGCAAAGGTTGG 62.362 66.667 32.09 17.97 41.35 3.77
236 237 4.362476 GGCTGCCGGCAAAGGTTG 62.362 66.667 32.09 18.77 44.01 3.77
266 267 1.587043 GCAAGGAAAAGCTCGGGGAC 61.587 60.000 0.00 0.00 0.00 4.46
267 268 1.303317 GCAAGGAAAAGCTCGGGGA 60.303 57.895 0.00 0.00 0.00 4.81
268 269 2.690778 CGCAAGGAAAAGCTCGGGG 61.691 63.158 0.00 0.00 0.00 5.73
269 270 2.870372 CGCAAGGAAAAGCTCGGG 59.130 61.111 0.00 0.00 0.00 5.14
286 287 4.562425 TGAATCCATCGGCGGGCC 62.562 66.667 7.21 0.00 0.00 5.80
287 288 2.974698 CTGAATCCATCGGCGGGC 60.975 66.667 7.21 0.00 0.00 6.13
293 294 3.341043 CGGCCGCTGAATCCATCG 61.341 66.667 14.67 0.00 0.00 3.84
294 295 3.654020 GCGGCCGCTGAATCCATC 61.654 66.667 41.71 9.84 38.26 3.51
308 309 4.570663 GGTGGATCTCGACGGCGG 62.571 72.222 12.58 0.62 38.28 6.13
309 310 4.570663 GGGTGGATCTCGACGGCG 62.571 72.222 2.87 2.87 39.35 6.46
310 311 2.515996 TTTGGGTGGATCTCGACGGC 62.516 60.000 0.00 0.00 0.00 5.68
311 312 0.036765 TTTTGGGTGGATCTCGACGG 60.037 55.000 0.00 0.00 0.00 4.79
312 313 1.076332 GTTTTGGGTGGATCTCGACG 58.924 55.000 0.00 0.00 0.00 5.12
313 314 1.003233 AGGTTTTGGGTGGATCTCGAC 59.997 52.381 0.00 0.00 0.00 4.20
314 315 1.358152 AGGTTTTGGGTGGATCTCGA 58.642 50.000 0.00 0.00 0.00 4.04
315 316 2.236395 ACTAGGTTTTGGGTGGATCTCG 59.764 50.000 0.00 0.00 0.00 4.04
316 317 3.679083 CGACTAGGTTTTGGGTGGATCTC 60.679 52.174 0.00 0.00 0.00 2.75
317 318 2.236395 CGACTAGGTTTTGGGTGGATCT 59.764 50.000 0.00 0.00 0.00 2.75
318 319 2.629051 CGACTAGGTTTTGGGTGGATC 58.371 52.381 0.00 0.00 0.00 3.36
319 320 1.339727 GCGACTAGGTTTTGGGTGGAT 60.340 52.381 0.00 0.00 0.00 3.41
320 321 0.035739 GCGACTAGGTTTTGGGTGGA 59.964 55.000 0.00 0.00 0.00 4.02
321 322 0.958876 GGCGACTAGGTTTTGGGTGG 60.959 60.000 0.00 0.00 0.00 4.61
322 323 1.296056 CGGCGACTAGGTTTTGGGTG 61.296 60.000 0.00 0.00 0.00 4.61
323 324 1.004200 CGGCGACTAGGTTTTGGGT 60.004 57.895 0.00 0.00 0.00 4.51
324 325 2.396157 GCGGCGACTAGGTTTTGGG 61.396 63.158 12.98 0.00 0.00 4.12
325 326 2.396157 GGCGGCGACTAGGTTTTGG 61.396 63.158 12.98 0.00 0.00 3.28
326 327 1.635663 CTGGCGGCGACTAGGTTTTG 61.636 60.000 16.45 0.00 0.00 2.44
327 328 1.375523 CTGGCGGCGACTAGGTTTT 60.376 57.895 16.45 0.00 0.00 2.43
328 329 2.264794 CTGGCGGCGACTAGGTTT 59.735 61.111 16.45 0.00 0.00 3.27
329 330 3.771160 CCTGGCGGCGACTAGGTT 61.771 66.667 16.45 0.00 0.00 3.50
332 333 3.905678 CTCCCTGGCGGCGACTAG 61.906 72.222 16.45 9.90 0.00 2.57
333 334 4.753662 ACTCCCTGGCGGCGACTA 62.754 66.667 16.45 0.00 0.00 2.59
336 337 4.435970 TAGACTCCCTGGCGGCGA 62.436 66.667 12.98 0.00 0.00 5.54
337 338 3.905678 CTAGACTCCCTGGCGGCG 61.906 72.222 0.51 0.51 0.00 6.46
338 339 3.541713 CCTAGACTCCCTGGCGGC 61.542 72.222 0.00 0.00 0.00 6.53
339 340 2.840102 CCCTAGACTCCCTGGCGG 60.840 72.222 0.00 0.00 0.00 6.13
340 341 1.265454 AAACCCTAGACTCCCTGGCG 61.265 60.000 0.00 0.00 0.00 5.69
341 342 1.763545 CTAAACCCTAGACTCCCTGGC 59.236 57.143 0.00 0.00 0.00 4.85
342 343 3.301274 CTCTAAACCCTAGACTCCCTGG 58.699 54.545 0.00 0.00 0.00 4.45
343 344 3.052793 TCCTCTAAACCCTAGACTCCCTG 60.053 52.174 0.00 0.00 0.00 4.45
344 345 3.208173 TCCTCTAAACCCTAGACTCCCT 58.792 50.000 0.00 0.00 0.00 4.20
345 346 3.684408 TCCTCTAAACCCTAGACTCCC 57.316 52.381 0.00 0.00 0.00 4.30
346 347 5.341872 GTTTCCTCTAAACCCTAGACTCC 57.658 47.826 0.00 0.00 41.44 3.85
362 363 6.502158 CCCATTATGATAGAGGTAGGTTTCCT 59.498 42.308 0.00 0.00 38.09 3.36
363 364 6.712276 CCCATTATGATAGAGGTAGGTTTCC 58.288 44.000 0.00 0.00 0.00 3.13
364 365 6.013293 AGCCCATTATGATAGAGGTAGGTTTC 60.013 42.308 0.00 0.00 0.00 2.78
365 366 5.852250 AGCCCATTATGATAGAGGTAGGTTT 59.148 40.000 0.00 0.00 0.00 3.27
366 367 5.415961 AGCCCATTATGATAGAGGTAGGTT 58.584 41.667 0.00 0.00 0.00 3.50
367 368 5.029973 AGCCCATTATGATAGAGGTAGGT 57.970 43.478 0.00 0.00 0.00 3.08
368 369 5.485353 TGAAGCCCATTATGATAGAGGTAGG 59.515 44.000 0.00 0.00 0.00 3.18
369 370 6.611613 TGAAGCCCATTATGATAGAGGTAG 57.388 41.667 0.00 0.00 0.00 3.18
370 371 5.046304 GCTGAAGCCCATTATGATAGAGGTA 60.046 44.000 0.00 0.00 34.31 3.08
371 372 4.263243 GCTGAAGCCCATTATGATAGAGGT 60.263 45.833 0.00 0.00 34.31 3.85
372 373 4.019501 AGCTGAAGCCCATTATGATAGAGG 60.020 45.833 0.00 0.00 43.38 3.69
373 374 4.936411 CAGCTGAAGCCCATTATGATAGAG 59.064 45.833 8.42 0.00 43.38 2.43
374 375 4.594491 TCAGCTGAAGCCCATTATGATAGA 59.406 41.667 15.67 0.00 43.38 1.98
375 376 4.694509 GTCAGCTGAAGCCCATTATGATAG 59.305 45.833 20.19 0.00 43.38 2.08
376 377 4.505566 GGTCAGCTGAAGCCCATTATGATA 60.506 45.833 20.19 0.00 43.38 2.15
377 378 3.484407 GTCAGCTGAAGCCCATTATGAT 58.516 45.455 20.19 0.00 43.38 2.45
378 379 2.421952 GGTCAGCTGAAGCCCATTATGA 60.422 50.000 20.19 0.00 43.38 2.15
379 380 1.952296 GGTCAGCTGAAGCCCATTATG 59.048 52.381 20.19 0.00 43.38 1.90
380 381 1.475751 CGGTCAGCTGAAGCCCATTAT 60.476 52.381 20.19 0.00 43.38 1.28
381 382 0.107703 CGGTCAGCTGAAGCCCATTA 60.108 55.000 20.19 0.00 43.38 1.90
382 383 1.377725 CGGTCAGCTGAAGCCCATT 60.378 57.895 20.19 0.00 43.38 3.16
383 384 2.270205 CGGTCAGCTGAAGCCCAT 59.730 61.111 20.19 0.00 43.38 4.00
384 385 4.704833 GCGGTCAGCTGAAGCCCA 62.705 66.667 26.24 0.47 44.04 5.36
394 395 1.201954 CGTCAAATCATGTGCGGTCAG 60.202 52.381 0.00 0.00 0.00 3.51
395 396 0.795698 CGTCAAATCATGTGCGGTCA 59.204 50.000 0.00 0.00 0.00 4.02
396 397 0.796312 ACGTCAAATCATGTGCGGTC 59.204 50.000 0.00 0.00 34.57 4.79
397 398 2.087501 TACGTCAAATCATGTGCGGT 57.912 45.000 0.00 0.00 34.57 5.68
398 399 2.607180 TCATACGTCAAATCATGTGCGG 59.393 45.455 0.00 0.00 34.57 5.69
399 400 3.306973 AGTCATACGTCAAATCATGTGCG 59.693 43.478 0.00 0.00 35.68 5.34
400 401 4.864916 AGTCATACGTCAAATCATGTGC 57.135 40.909 0.00 0.00 0.00 4.57
401 402 6.092670 AGGAAAGTCATACGTCAAATCATGTG 59.907 38.462 0.00 0.00 0.00 3.21
402 403 6.092670 CAGGAAAGTCATACGTCAAATCATGT 59.907 38.462 0.00 0.00 0.00 3.21
403 404 6.092670 ACAGGAAAGTCATACGTCAAATCATG 59.907 38.462 0.00 0.00 0.00 3.07
404 405 6.173339 ACAGGAAAGTCATACGTCAAATCAT 58.827 36.000 0.00 0.00 0.00 2.45
405 406 5.547465 ACAGGAAAGTCATACGTCAAATCA 58.453 37.500 0.00 0.00 0.00 2.57
406 407 5.220228 CGACAGGAAAGTCATACGTCAAATC 60.220 44.000 0.00 0.00 38.43 2.17
407 408 4.625742 CGACAGGAAAGTCATACGTCAAAT 59.374 41.667 0.00 0.00 38.43 2.32
408 409 3.985279 CGACAGGAAAGTCATACGTCAAA 59.015 43.478 0.00 0.00 38.43 2.69
409 410 3.005050 ACGACAGGAAAGTCATACGTCAA 59.995 43.478 0.00 0.00 38.43 3.18
410 411 2.555325 ACGACAGGAAAGTCATACGTCA 59.445 45.455 0.00 0.00 38.43 4.35
411 412 3.213249 ACGACAGGAAAGTCATACGTC 57.787 47.619 0.00 0.00 38.43 4.34
412 413 3.314553 CAACGACAGGAAAGTCATACGT 58.685 45.455 0.00 0.00 38.43 3.57
413 414 2.666508 CCAACGACAGGAAAGTCATACG 59.333 50.000 0.00 0.00 38.43 3.06
414 415 2.415512 GCCAACGACAGGAAAGTCATAC 59.584 50.000 0.00 0.00 38.43 2.39
415 416 2.037902 TGCCAACGACAGGAAAGTCATA 59.962 45.455 0.00 0.00 38.43 2.15
416 417 1.202758 TGCCAACGACAGGAAAGTCAT 60.203 47.619 0.00 0.00 38.43 3.06
417 418 0.179234 TGCCAACGACAGGAAAGTCA 59.821 50.000 0.00 0.00 38.43 3.41
418 419 0.586802 GTGCCAACGACAGGAAAGTC 59.413 55.000 0.00 0.00 35.19 3.01
419 420 0.818040 GGTGCCAACGACAGGAAAGT 60.818 55.000 0.00 0.00 0.00 2.66
420 421 1.841663 CGGTGCCAACGACAGGAAAG 61.842 60.000 0.00 0.00 0.00 2.62
421 422 1.890041 CGGTGCCAACGACAGGAAA 60.890 57.895 0.00 0.00 0.00 3.13
422 423 2.280524 CGGTGCCAACGACAGGAA 60.281 61.111 0.00 0.00 0.00 3.36
423 424 3.509137 GACGGTGCCAACGACAGGA 62.509 63.158 10.16 0.00 34.93 3.86
424 425 3.041940 GACGGTGCCAACGACAGG 61.042 66.667 10.16 0.00 34.93 4.00
425 426 3.403057 CGACGGTGCCAACGACAG 61.403 66.667 10.16 0.00 34.93 3.51
426 427 4.953868 CCGACGGTGCCAACGACA 62.954 66.667 10.16 0.00 34.93 4.35
474 475 2.655364 CGGAGGCAGCACGTATCG 60.655 66.667 0.00 0.00 0.00 2.92
516 517 0.179179 GCCGTTCAGCAATTCAGCTC 60.179 55.000 0.00 0.00 44.54 4.09
531 532 2.118132 GGCATGATTGATTGGCCGT 58.882 52.632 0.00 0.00 34.56 5.68
660 665 1.153568 CATTCGAAGCTGGCGGAGA 60.154 57.895 3.35 0.00 0.00 3.71
698 703 1.446272 CTTCGTTCTCCCTCCACGC 60.446 63.158 0.00 0.00 33.85 5.34
699 704 1.132643 CTACTTCGTTCTCCCTCCACG 59.867 57.143 0.00 0.00 35.18 4.94
714 719 1.226746 GCAAACTGCACCGACTACTT 58.773 50.000 0.00 0.00 44.26 2.24
764 769 3.011517 GCAGGGAGAGAGGGGCAA 61.012 66.667 0.00 0.00 0.00 4.52
821 826 2.815211 CCGTCCGCATGTGGTCTG 60.815 66.667 24.28 12.00 0.00 3.51
823 828 2.813908 GTCCGTCCGCATGTGGTC 60.814 66.667 24.28 17.99 0.00 4.02
840 845 1.203758 TCCCACTATATATGCACGCGG 59.796 52.381 12.47 0.00 0.00 6.46
859 864 1.127951 CCAAGTTGCGTATCCGTTGTC 59.872 52.381 0.00 0.00 36.15 3.18
889 894 0.805322 CAGGAGCTAGCTGAACTGCG 60.805 60.000 24.99 3.04 38.13 5.18
890 895 0.248843 ACAGGAGCTAGCTGAACTGC 59.751 55.000 27.62 13.40 0.00 4.40
891 896 2.740981 CAAACAGGAGCTAGCTGAACTG 59.259 50.000 24.99 26.14 0.00 3.16
892 897 2.370189 ACAAACAGGAGCTAGCTGAACT 59.630 45.455 24.99 14.47 0.00 3.01
893 898 2.772287 ACAAACAGGAGCTAGCTGAAC 58.228 47.619 24.99 12.24 0.00 3.18
894 899 3.323691 TGTACAAACAGGAGCTAGCTGAA 59.676 43.478 24.99 0.00 0.00 3.02
895 900 2.897326 TGTACAAACAGGAGCTAGCTGA 59.103 45.455 24.99 0.00 0.00 4.26
897 902 4.559862 AATGTACAAACAGGAGCTAGCT 57.440 40.909 19.45 19.45 39.49 3.32
898 903 4.455877 ACAAATGTACAAACAGGAGCTAGC 59.544 41.667 6.62 6.62 39.49 3.42
899 904 5.700832 TGACAAATGTACAAACAGGAGCTAG 59.299 40.000 0.00 0.00 39.49 3.42
900 905 5.616270 TGACAAATGTACAAACAGGAGCTA 58.384 37.500 0.00 0.00 39.49 3.32
901 906 4.460263 TGACAAATGTACAAACAGGAGCT 58.540 39.130 0.00 0.00 39.49 4.09
902 907 4.829064 TGACAAATGTACAAACAGGAGC 57.171 40.909 0.00 0.00 39.49 4.70
905 910 4.340950 AGGGTTGACAAATGTACAAACAGG 59.659 41.667 0.00 0.00 39.49 4.00
906 911 5.067153 TGAGGGTTGACAAATGTACAAACAG 59.933 40.000 0.00 0.00 39.49 3.16
907 912 4.950475 TGAGGGTTGACAAATGTACAAACA 59.050 37.500 0.00 0.00 40.69 2.83
908 913 5.278604 GTGAGGGTTGACAAATGTACAAAC 58.721 41.667 0.00 0.00 0.00 2.93
909 914 4.035792 CGTGAGGGTTGACAAATGTACAAA 59.964 41.667 0.00 0.00 0.00 2.83
910 915 3.562141 CGTGAGGGTTGACAAATGTACAA 59.438 43.478 0.00 0.00 0.00 2.41
911 916 3.135225 CGTGAGGGTTGACAAATGTACA 58.865 45.455 0.00 0.00 0.00 2.90
963 969 3.368571 GTTCGGTCCCTCGACGGT 61.369 66.667 0.15 0.00 40.17 4.83
1014 1020 1.123077 TCGTGAGATGGGAGATTGGG 58.877 55.000 0.00 0.00 33.31 4.12
1025 1031 3.200825 AGATCCCAAACCATTCGTGAGAT 59.799 43.478 0.00 0.00 41.60 2.75
1034 1040 3.858638 ACTTTCCCTAGATCCCAAACCAT 59.141 43.478 0.00 0.00 0.00 3.55
1121 1127 2.730672 GCACGCACATCTCCACGAC 61.731 63.158 0.00 0.00 0.00 4.34
1262 1268 0.390860 CCGGACCAGATCAGATCACC 59.609 60.000 13.14 8.96 0.00 4.02
1277 1283 0.971386 GTCCACTCCTGTAAACCGGA 59.029 55.000 9.46 0.00 0.00 5.14
1482 1488 4.910585 GCGTACATCTGGGCCCCG 62.911 72.222 22.27 14.56 0.00 5.73
1512 1518 4.791069 TACGAGGAGGTGGGCCCC 62.791 72.222 22.27 10.91 34.57 5.80
1521 1527 4.155462 TGCTTGTAGTAGTTGTACGAGGAG 59.845 45.833 0.00 0.00 33.86 3.69
1630 1636 0.978146 ATTACTGAGCAGCCTCCCGT 60.978 55.000 0.00 0.00 37.29 5.28
1632 1638 0.543749 ACATTACTGAGCAGCCTCCC 59.456 55.000 0.00 0.00 37.29 4.30
1659 1665 4.884668 AACCCGTCCATATTATGATCGT 57.115 40.909 5.21 0.00 0.00 3.73
1667 1673 8.990163 AATCATAAGTAAAACCCGTCCATATT 57.010 30.769 0.00 0.00 0.00 1.28
1709 1715 9.555727 AGCAAAGTGTACTTAATTTACAGAGAA 57.444 29.630 0.00 0.00 34.61 2.87
1743 1749 2.665649 TCGTTGTATCTGTTGGCGAT 57.334 45.000 0.00 0.00 0.00 4.58
1845 1857 0.322975 CCCACAGGAGACAGGAACAG 59.677 60.000 0.00 0.00 33.47 3.16
1864 1876 4.519213 TGTATTGGTTGTATAGTGGCACC 58.481 43.478 15.27 0.00 0.00 5.01
1878 1890 2.226437 CGCTGAAGTTGCTTGTATTGGT 59.774 45.455 0.00 0.00 0.00 3.67
1879 1891 2.855180 CGCTGAAGTTGCTTGTATTGG 58.145 47.619 0.00 0.00 0.00 3.16
1880 1892 2.245096 GCGCTGAAGTTGCTTGTATTG 58.755 47.619 0.00 0.00 0.00 1.90
1881 1893 1.135972 CGCGCTGAAGTTGCTTGTATT 60.136 47.619 5.56 0.00 0.00 1.89
1882 1894 0.443869 CGCGCTGAAGTTGCTTGTAT 59.556 50.000 5.56 0.00 0.00 2.29
1883 1895 1.565156 CCGCGCTGAAGTTGCTTGTA 61.565 55.000 5.56 0.00 0.00 2.41
1884 1896 2.633657 CGCGCTGAAGTTGCTTGT 59.366 55.556 5.56 0.00 0.00 3.16
1885 1897 1.915614 ATCCGCGCTGAAGTTGCTTG 61.916 55.000 5.38 0.00 0.00 4.01
1897 1909 1.579084 TTTGTACCACCAATCCGCGC 61.579 55.000 0.00 0.00 0.00 6.86
1928 1940 5.022787 AGGGAATAAACTATGGCAGCAAAA 58.977 37.500 0.00 0.00 0.00 2.44
1935 1947 3.287222 TGCACAGGGAATAAACTATGGC 58.713 45.455 0.00 0.00 0.00 4.40
1996 2008 1.405105 CATTCTTGCCAACGGTATGGG 59.595 52.381 6.34 1.42 41.01 4.00
2026 2038 1.149401 GGAGATGCCCTAACCAGCC 59.851 63.158 0.00 0.00 0.00 4.85
2029 2041 0.251916 CGTTGGAGATGCCCTAACCA 59.748 55.000 0.00 0.00 34.97 3.67
2048 2060 1.579429 GTGTGGTTTGATGGTCGGC 59.421 57.895 0.00 0.00 0.00 5.54
2085 2097 4.634004 GGATGACACAACATATCCGAACAA 59.366 41.667 0.00 0.00 30.77 2.83
2089 2101 4.188462 GTTGGATGACACAACATATCCGA 58.812 43.478 3.65 0.00 45.62 4.55
2095 2107 0.516877 CGCGTTGGATGACACAACAT 59.483 50.000 0.00 0.00 46.41 2.71
2116 2128 1.651987 CTTTGCGGACCGATACATGT 58.348 50.000 20.50 2.69 0.00 3.21
2163 2175 2.111043 CCAACGCCTGTCTGTGGT 59.889 61.111 0.00 0.00 0.00 4.16
2165 2177 2.669569 CCCCAACGCCTGTCTGTG 60.670 66.667 0.00 0.00 0.00 3.66
2166 2178 4.643387 GCCCCAACGCCTGTCTGT 62.643 66.667 0.00 0.00 0.00 3.41
2167 2179 3.850098 AAGCCCCAACGCCTGTCTG 62.850 63.158 0.00 0.00 0.00 3.51
2168 2180 3.133365 AAAGCCCCAACGCCTGTCT 62.133 57.895 0.00 0.00 0.00 3.41
2169 2181 2.597510 AAAGCCCCAACGCCTGTC 60.598 61.111 0.00 0.00 0.00 3.51
2170 2182 2.912025 CAAAGCCCCAACGCCTGT 60.912 61.111 0.00 0.00 0.00 4.00
2171 2183 2.912025 ACAAAGCCCCAACGCCTG 60.912 61.111 0.00 0.00 0.00 4.85
2174 2186 4.662961 GCCACAAAGCCCCAACGC 62.663 66.667 0.00 0.00 0.00 4.84
2175 2187 4.341502 CGCCACAAAGCCCCAACG 62.342 66.667 0.00 0.00 0.00 4.10
2177 2189 2.909965 GACGCCACAAAGCCCCAA 60.910 61.111 0.00 0.00 0.00 4.12
2178 2190 4.966787 GGACGCCACAAAGCCCCA 62.967 66.667 0.00 0.00 0.00 4.96
2188 2201 3.509137 GACAACGGTCTGGACGCCA 62.509 63.158 0.00 0.00 40.99 5.69
2255 2269 4.021925 AGGAGGGAAGTGCACGCC 62.022 66.667 19.70 19.70 40.71 5.68
2269 2283 2.301870 AGTGGCGATAACTGTTTCAGGA 59.698 45.455 0.00 0.00 35.51 3.86
2277 2291 1.471676 GGTCTGGAGTGGCGATAACTG 60.472 57.143 0.00 0.00 0.00 3.16
2278 2292 0.824759 GGTCTGGAGTGGCGATAACT 59.175 55.000 0.00 0.00 0.00 2.24
2281 2295 2.782222 GCGGTCTGGAGTGGCGATA 61.782 63.158 0.00 0.00 0.00 2.92
2288 2302 2.524394 ACACTGGCGGTCTGGAGT 60.524 61.111 0.00 0.00 0.00 3.85
2296 2310 0.448990 CATGAATGTGACACTGGCGG 59.551 55.000 7.20 0.00 0.00 6.13
2299 2313 0.813184 GGGCATGAATGTGACACTGG 59.187 55.000 7.20 0.00 0.00 4.00
2307 2321 0.107508 CTCTGGACGGGCATGAATGT 60.108 55.000 0.00 0.00 0.00 2.71
2327 2341 4.436998 GGTGAGAGGCCGTGTCCG 62.437 72.222 0.00 0.00 0.00 4.79
2398 2415 4.057428 GGAGGAGTCGCGTGCACT 62.057 66.667 16.19 1.28 0.00 4.40
2411 2428 0.580104 GTGTCGTTTGAACACGGAGG 59.420 55.000 0.00 0.00 40.74 4.30
2417 2434 1.707239 GCCGTGGTGTCGTTTGAACA 61.707 55.000 0.00 0.00 0.00 3.18
2445 2467 0.381801 CATTAATGTGGGCGGCAGAC 59.618 55.000 12.47 7.41 0.00 3.51
2477 2499 2.180276 GGAGCTGAAGTAGGTTCCTCA 58.820 52.381 0.00 0.00 37.23 3.86
2490 2512 0.532573 GGACAGACGAATGGAGCTGA 59.467 55.000 0.00 0.00 32.86 4.26
2492 2514 0.616111 AGGGACAGACGAATGGAGCT 60.616 55.000 0.00 0.00 0.00 4.09
2495 2517 1.186200 CAGAGGGACAGACGAATGGA 58.814 55.000 0.00 0.00 0.00 3.41
2499 2521 1.228894 AGGCAGAGGGACAGACGAA 60.229 57.895 0.00 0.00 0.00 3.85
2505 2527 1.610673 GGTGAGAGGCAGAGGGACA 60.611 63.158 0.00 0.00 0.00 4.02
2517 2539 1.031571 GGCGAATGGCAATGGTGAGA 61.032 55.000 0.00 0.00 46.16 3.27
2519 2541 2.051518 GGGCGAATGGCAATGGTGA 61.052 57.895 0.00 0.00 46.16 4.02
2559 2582 2.488153 GGTGGATAAATTCGGCTATGGC 59.512 50.000 0.00 0.00 37.82 4.40
2584 2607 0.537653 CGGAAGAGGAGAAAGGGACC 59.462 60.000 0.00 0.00 0.00 4.46
2614 2637 3.567797 GCGCGAAGAGTCCATGGC 61.568 66.667 12.10 2.00 0.00 4.40
2621 2644 0.249911 AGTTTTGGAGCGCGAAGAGT 60.250 50.000 12.10 0.00 0.00 3.24
2625 2648 1.002900 CAAAGAGTTTTGGAGCGCGAA 60.003 47.619 12.10 0.00 39.98 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.