>input_sequence_72708
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---------------------------------------------ATGACGGTAAGTAACCCAATCTCCCATCTCACGAA
TGGTTTGGGATCTAGGGAAAGTATTACTGGTTTATCATTTGGCCATTTTGTGTCTGATGATGCTGCCTTGGTCTATCACC
TGCCAGGTCGTGGAGATGTGCGTGCATATGTGTTGCGCCGGGTGCGAGAAGAAGATAAGGAAGGCAGTCGAGAGGTTAGA
AGGTACGTACCCACTAGCTTTCTATCTGAGATCATGAGGAGATATGTGCTGAACGCATTCAGATGACGGTGATCTGATCT
GGTCCGGTTTACAGGAGTGGACGCGGTGGAGATCGACATGGAGATGCAGAAGGTGACGGTGAACGGGGACGTGGACCAGA
AGAAGGTGCTCAAGACGGTGAGGAGGACGGGAAAGCGCGCGGTGCTGTGGCCGACCCCGTTCATCGCCGGCGCAGGCGCC
GGCGGCGCCGTCAACCTCCTCGCGCAGCAGCACCAGTACCACCCGGGCGGGGCCCAGATGTACGCGACCCACGCCTCGGG
GCCCACCTCCTCGTACAACTACTACAAGCACGGCTACGACGACTCGCGCCTCTACGGCGCCAACTCCGCCGTCGTCGGCG
GCACCAGGGCCACCGATTACTTCAGCGACGAGAACACGGGAGGCTGCTCAGTAATGTGA---------------------
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>chr3D_1_TraesCS3D01G295000
GGAATTCCAGCCCCCTAGGGTTTCCCCATGCAGGACGTAAGGTGTTGCAGATCGTTTGTATGTGGAGGAGATTCCGGTGC
AAAACCTTCCTTGCCAGTAGCCACTTTGCCGAAGCATCATCGTTAGCGTCGTCGATCACCAGAGGCGTTGCCTCCTCCTC
GGAGATGTCCAGCTTGCCGAGTGCCTCCTCCATCTGCGCCCGCGCGGAGCGAGGGGATAGTGCACCGCTCCTCTTCCAAC
CTTTGCCGGCAGCCGATGTTGCCATCGTCCCCGAGCTTTTCCTTGCGGCCCGCCGATGGATTCAGCGGCCGCCGTCGAGA
TCCACCCAAAACCTAGTCGCCGCCAGGGAGTCTAGGGTTTAGAGGAAACCTACCTCTATCATAATGGGCTTCAGCTGACC
GCACATGATTTGACGTATGACTTTCCTGTCGTTGGCACCGTCGGCCGCAGCCACCGAGCCACAGCTCTCACTAGCGATAC
GTGCTGCCTCCGCATGCCGTCGATCCAGGGGGCGTTGAGCTGAATTGCTGAACGGCCAATCAATCATGCCTGCGGATCAC
GCGGCCCGCCCCCTTTCCCGCCGTTCTTCACTCGGACGAAACGCGGCACCGAGAGGAGAGCCTCGGGATACCACACGCCA
GTG----GTTGCTTGCGGCTCCCATCTCCGCCAGCTTCGAATGGCGTTTTCTATAGCGCGTAGCGTGGAGGGAGAACGAA
GTAGTCGGTGCAGTTTGCACGTGAAATAGTTCGTCACAAGTCAAGTCTTTGCCCCTCTCTCCCTGCCGACCTCGCAGCTC
GACCGCCATGCCCATGCTTCACGGGCAGACCACATGCGGACGGACCGCGTGCATATATAGTGGGACAACGGATACGCAAC
TTGGCAGTTGACACGCAGTTCAGCTAGCTCCTGTTTGTACATTTGTCAACC-CTCACGGGTTCACCCGAACGTCGAAGAA
CTCCCCAAACCGTCGAGGGACCGAACGCAAAGCTTGCCAAGCAATATGACGGTAAGTAACCCAATCTCCCATCTCACGAA
TGGTTTGGGATCTAGGGAAAGTATTACTGGTTTATCATTTGGCCATTTTGTGTCTGATGATGCTGCCTTGGTCTATCACC
TGCCAGGTCGTGGAGATGTGCGTGCATATGTGTTGCGCCGGGTGCGAGAAGAAGATAAGGAAGGCAGTCGAGAGGTTAGA
AGGTACGTACCCACTAGCTTTCTATCTGAGATCATGAGGAGATATGTGCTGAACGCATTCAGATGACGGTGATCTGATCT
GGTCCGGTTTACAGGAGTGGACGCGGTGGAGATCGACATGGAGATGCAGAAGGTGACGGTGAACGGGGACGTGGACCAGA
AGAAGGTGCTCAAGACGGTGAGGAGGACGGGAAAGCGCGCGGTGCTGTGGCCGACCCCGTTCATCGCCGGCGCAGGCGCC
GGCGGCGCCGTCAACCTCCTCGCGCAGCAGCACCAGTACCACCCGGGCGGGGCCCAGATGTACGCGACCCACGCCTCGGG
GCCCACCTCCTCGTACAACTACTACAAGCACGGCTACGACGACTCGCGCCTCTACGGCGCCAACTCCGCCGTCGTCGGCG
GCACCAGGGCCACCGATTACTTCAGCGACGAGAACACGGGAGGCTGCTCAGTAATGTGATCCACACGATCATAATATGGA
CGGGTTTTACTTATGATTAAATCTTCTTCTTTCATTCTCTGTAAATTAAGTACACTTTGCTGAAAAAAATCGCCAACAGA
T------ACAACGATCGCTCTCAAATAATCTTGAATTTAGGACATACTGAGTAGCCATCTGAGTGGCACCCTACGTCCGA
ACGGAACAATATGCTGCTGTTCCTGTCTCCTGTGGGGTGCCACTATACAACCAATACAAGCAACTTCAGCGCGGATTGGT
GGTACAAAAATGTAATCTTTTTTGCTGCCATAGTTTATTCCCTGTGCAATAACCACACGGTGAGCATATCATCCAACTCA
CCATCCACCCATACCGTTGGCAAGAATGCACTAGCTCGGCTGGTTAGGGCATCTCCAACGCCGACCATCAAACCACACGC
ATACGTCTGAACCGTGTTGTTCGGATATGTTGTGTCATCCAACGCGGACATGTATCGGTCCGCAAAGCGGTCCGGACGCA
CTTTCTCCTGCAAAACCACAGACAGGCGTTGGG-GCTTTGT-GGCGTCCAGACCGTTGTCACGCCTGCGTCTGACCGCCC
TGACCACCGACCCCCCCTCCCCCCCACCGGCGTGCACTTCCCTCCTGAAACAGTTATCGCCACTCCAGACCGCCAGTGTC
ACATTCATGCCCGTCCAGAGCGGACACGGCCTCTCACCGGCGCC-GCACTGAAGCGGCGCACCGGCCGAGAGCGCCGCCC
GC--GCCGCTTCCCAGTGCACGCGACTCCTCCGTGTTCAAACGACACCACGGCCGTC-----GCCCGTCTGCCGCCCACA
TTAATGGCACGCGGTTGCTGAGGAACCTACTTCAGCTCCATTCGTCTGTCCCTCTGCCTCTCACCATTGCCAT-TCGCCC
GCTATATAAACTGCAGCCCCAGCCATAGCCGAATTTATCCACCTCCGGTCCCTTTCTCCTCTTCCGCATCACTCCCGCCA
TGGACTCTTCGCGCTCCAAAACTCTTTGGGATGAAT
>chr3B_438
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-------------------------------------CCGTCGGCGGCAGCCACCGAGCCACAGCTCTCACTAGGGAGAC
GTGATGCCTCCGCATGCCGTCGATCCAGGGGGCGTT-AGCTGAATTGCTGAGCGGCCAATCAATCAGGCCTGCGGATCAC
GCGGCCCGCCCCCTTTCCCGCCGTTCTTCACTCGGACGAAACGCGGCACCGAGAGGAGAGCCTCGGGATACCACACGCCA
GTGCGGCGTTGCTTGCGGCTCCCA-CTCCGCCAGCTTCGAATGGCGTTTTCTATAGCGCGTAATGTGGAGGGAGAACGGA
GTGGTCGGTGCAGTTTGCACGTGAAATAGTTCGTCACAAGTCAAGTCTATGCCCCTCTCTCCCTGCCGACCTCGCAGCTC
GACCGCCGTGCCCATGCTTCACGGGTACACCACATGCGGACGGAGCGCGTGCATATATAGTGGAACAACGGATACGCAAC
TTGGCAGTTGACAGTTGACACGCAACTCTA------GTACATTTGTCAACGTCTCACGGGTTCACCCGAACGTCGAAGAA
CTCCCCAAGCCGTCGAGGGACCGAACACAGAGCTTGCCAAGCAACATGACGGTAAGTAAGCCAATCTCCCCTCTCACGAG
TGGTTTGGGATCTAGGGAAAGTATTACTGGTTTATCATTTGGCCATTTTGTGTCTGATGATGCTGCCTTGGTCCATCACC
TGCCAGATCGTGGAGATGTGCGTGCATATGTGTTGCGCCGGGTGCGAGAAGAAGATAAGGAAGGCAGTCGAGAGGTTAGA
AGGTACGTACCCACTAGCTTTCTATCTGAGATCATGGATAGATATGTGCTGAACGCATTCAGATGACAGTGATCTGATCT
GGCCCGGTTTACAGGAGTGGACGCGGTGGAGATCGACATGGAGATGCAGAAGGTGACGGTGAACGGGGACGTGGACCAGA
AGAAGGTGCTCAAGACGGTGAGGAGGACGGGAAAGCGCGCGGTGCTGTGGCCGACCCCGTTCATCGCCGGCGCGGGCGCC
GGCGGCGCCGTCAACCTCCTCGCGCAGCAGCACCAGTACCACCCGGGTGGGGCCCAGATGTACGCGACCCACGCCTCCGG
GCCCACATCCTCGTACAACTACTACAAGCACGGCTACGACGACTCGCGCCTCTACGGCGCCAACTCCGCCGTCGTCGGCG
GCACCAGGGCCACCGATTACTTCAGCGACGAGAACCCCGGAGGCTGCTCCGTAATGTGATCCACGCGATCATCATATGGA
TGGGTTTTACTTATGATTATATCTTCTTGTTTCTGTCTCTGTAAATAAAGTACACTTTGCTGAAAAAA-TCGCCAACAGA
TACTGATACAACGATCGCTCTCAAATAATCTTGAATTTAGGACATACCGAGTAGCCATCTGAGTGGCACCCGACGTCCGA
ACGGAACAATATGCTGTTGTTCCTG-------TGGCGTGCCACTATACA--------AAGCAACTTCATCGCGGATTGGT
GGTACAAAAATGTAATATTCTTTGCTCCCATACTTTATTCCCTGTCCAATAACCACACGGTGAGCATATCATCCAACTCA
CCATCCATCCATACCGTTGCCAAGAATGCACTAGCTCAGCAGGTTAGGGCATCTCCA-----------------------
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>chr6A_2035
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---------------------------------------------AGGGCATCTTCAACACCGACCCTCAAACCCCCTGC
ATACGCCTGGAACGTGCTGTCTAAACGTGTTGTGCCATCCAACACGGGTTTGTATCGGTCTGCAAGGCGGTCCGGACGCA
CTTTCTCCTGCAAACCGGAGACAACATG--GGG-GCTTTGCGGGCGTCTCGGCCGCTACCATGCCCGCGTCTGACCACGC
TGGCCCACCCAAA-CCCCCTCCCTCGCCAGCGTGCACTTCCTGCCTGAAATGGTCAACGCCGCTCTAGTGCGTCAGTGTC
GCGTTCAAGTCCGGCTAGATGGAATGCGACCTCTCACTAGGGCCGGCATTAAAGTAGCGAGCCAGCCGAGAGAGCACCCC
CTACACAACTTCTCGGTGCATGCGATTGCTCTACGTTCAAACGGCACTACGGTCGCCCATCTGTCCATCTGTCGCTTGCA
TTATA-ACACGCGGTTGCCGAGGAACCTATTCCGGTGCCACCCATTCGTCCCTCTGCCACCCACCATTAGCACCTCGTCC
ACTATATAAATTGTAGCCCCACTCATGGCCGTATACATCCTCCTCCAGTCCCTTTATCCTCTTCTGCACCACTCTCACCA
TGGTCTCCTCACACACCAAAGCTCT-----------
>chr2D_2050
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------------------------------------------------------------CCGACCCTCAAACCGCGCAC
ATACTTCTAGACCACGCGGTCCGGATGTGTTGTGCCATCCAACGGGGGCATGTACAGGTCCGCAGAGCGGTCCAGACGCA
GTTTCTCCCACAAATCGGAGATACGCTAGGAGGTGCTTTGCGGGCGTCCGGGCCGCTGCCACGCCCACGTCTAACTGCCC
TAACCCACCCAAA-TCCACTCCCTCGCCCGCGCGC--TTCCCGCCCGAAATGGTCAGCACCGTTCCAGAGCGTCAGTGTC
GCATTCATGCCCGGCCAGAGGGGACGCGACCTCTCACAGGCGCTGGCACTGAAGCGACACGCCTGCTGAGAGCGCGCCGG
CCATGCCGCTTCCCGGTGCACGCGACTGTTTCGCATTCAAACGACACCACGACCATATGTCCG-CAATCTGCCACCCACA
TTAACGACACACAGTTGTCGTGGAACCTACTCCGGCGCCACTCGTCCGTCCTTCTGGCGCCAAACATTGCCAT-TCGCCC
GCTATATAAACTGCAGTCCCGACCATAGCCACATCCATTCTCCTTCTGTCCCTTTCTCCTCTTCCAAATCATTCCCACCA
TGGCCTCCTCGCGCTCCAAA----------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S----------------------------S--S--
---S--------------------------------S--------------S--------------S-------------
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------------------------S-------------------------------------SS--------------S-
--S---------------------------------------------S-------------------------------
-------S-----------------S-S----------------S------------------S----------------
-------------SSSSSSS-SSSSSS--SSSSSSS--------------S-----------------------------
--------S-----------------S--S--------------S--------------S----------S--------S
-------------------------------------------------------------------------S------
------S-------------------------------------------------------------------------
------------------------------------SSS----------------------------S------------
--S-----------------------------------------------------------------------------
-------------------------------------------------------------------------S------
-----------------------------------------------S-----------------------------S--
------S-------------------------------------------------------------------------
-----------------------------------S-S-----------S--------------S-------S-------
S------------------S--------S----SS-----------S---------------------S-----------
-----------------------------------------------S-----------------------S--------
----------------S--------SSSSSSS---S-------------SSSSSSSS-----------S-----------
----------------S--S------S-----S------------S----------------------------------
-------S-----------S-----------------S--S------------------S------S-------S-S---
---------S------S---S-----S-------S------------S--------------------------------
--------------S-SSSSSSS--SS-SS----------S--------S-S---S--S------S--------------
-----SS-SSSSSS---S-S---S-S--S-------------S-------SS--S-S----S-------S--S-------
S------------S------S----S--S--------S----------------------S--S-----------SS---
S-------------S------------S-----S-----------------------------S--S-------------
----S-S-----------S------------S-S--S---S-----S-----------S-S-------------------
---------------------S---------S--SS----S-----S-----------------------------S---
---S---S------------S----SSSSSSSSSSS
>forward_83
---------------------------------------------------------------GGAGGAGATTCCGGTGC
AAA-----------------------------------------------------------------------------
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>reverse_2041
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----------------------------------------TGGTTAGGGCATCTCCAACG--------------------
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