Multiple sequence alignment - TraesCS3D01G291500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G291500 chr3D 100.000 2267 0 0 1 2267 401671793 401674059 0.000000e+00 4187.0
1 TraesCS3D01G291500 chr3D 98.165 109 2 0 400 508 401672086 401672194 8.260000e-45 191.0
2 TraesCS3D01G291500 chr3D 98.165 109 2 0 294 402 401672192 401672300 8.260000e-45 191.0
3 TraesCS3D01G291500 chr3D 80.374 107 14 5 543 644 401672298 401672402 8.680000e-10 75.0
4 TraesCS3D01G291500 chr3D 80.374 107 14 5 506 610 401672335 401672436 8.680000e-10 75.0
5 TraesCS3D01G291500 chr3A 92.937 1614 61 20 679 2267 522056451 522058036 0.000000e+00 2300.0
6 TraesCS3D01G291500 chr3B 92.572 1602 83 20 688 2267 527232920 527234507 0.000000e+00 2266.0
7 TraesCS3D01G291500 chr3B 88.811 143 12 4 134 273 489685018 489684877 2.990000e-39 172.0
8 TraesCS3D01G291500 chr1A 90.672 268 15 6 1503 1769 276123956 276123698 4.630000e-92 348.0
9 TraesCS3D01G291500 chr5B 90.299 268 16 6 1503 1769 664222985 664222727 2.160000e-90 342.0
10 TraesCS3D01G291500 chr5B 84.163 221 32 3 978 1197 14194486 14194268 6.340000e-51 211.0
11 TraesCS3D01G291500 chr5B 94.872 117 6 0 142 258 38365240 38365124 1.380000e-42 183.0
12 TraesCS3D01G291500 chr4D 95.868 121 4 1 142 261 502404865 502404745 6.390000e-46 195.0
13 TraesCS3D01G291500 chr6B 93.182 132 7 2 142 272 365557 365687 2.300000e-45 193.0
14 TraesCS3D01G291500 chr2D 96.552 116 4 0 142 257 543312505 543312620 2.300000e-45 193.0
15 TraesCS3D01G291500 chr7D 94.215 121 7 0 142 262 176125274 176125154 3.850000e-43 185.0
16 TraesCS3D01G291500 chr7B 94.167 120 7 0 142 261 712100753 712100634 1.380000e-42 183.0
17 TraesCS3D01G291500 chr4A 91.667 132 11 0 131 262 631238741 631238610 1.380000e-42 183.0
18 TraesCS3D01G291500 chr1D 93.443 122 8 0 142 263 209564264 209564143 4.970000e-42 182.0
19 TraesCS3D01G291500 chr5A 84.444 180 19 3 2086 2265 12820641 12820471 3.870000e-38 169.0
20 TraesCS3D01G291500 chr1B 83.654 104 13 2 609 712 430089178 430089079 6.670000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G291500 chr3D 401671793 401674059 2266 False 943.8 4187 91.4156 1 2267 5 chr3D.!!$F1 2266
1 TraesCS3D01G291500 chr3A 522056451 522058036 1585 False 2300.0 2300 92.9370 679 2267 1 chr3A.!!$F1 1588
2 TraesCS3D01G291500 chr3B 527232920 527234507 1587 False 2266.0 2266 92.5720 688 2267 1 chr3B.!!$F1 1579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 160 0.032813 TTACTCCCTCCGTCCGGAAT 60.033 55.0 5.23 0.0 44.66 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 1913 0.034896 AAACAGAGCCACCACTACCG 59.965 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.537728 AATTGAAGCATGATACCCTTTTATGA 57.462 30.769 0.00 0.00 0.00 2.15
32 33 7.953005 TTGAAGCATGATACCCTTTTATGAA 57.047 32.000 0.00 0.00 0.00 2.57
33 34 7.953005 TGAAGCATGATACCCTTTTATGAAA 57.047 32.000 0.00 0.00 0.00 2.69
34 35 8.537728 TGAAGCATGATACCCTTTTATGAAAT 57.462 30.769 0.00 0.00 0.00 2.17
35 36 9.639563 TGAAGCATGATACCCTTTTATGAAATA 57.360 29.630 0.00 0.00 0.00 1.40
39 40 9.988350 GCATGATACCCTTTTATGAAATATACG 57.012 33.333 0.00 0.00 0.00 3.06
88 89 9.520204 TTTCTCTCAAAAGCTTTGTTAATTCTG 57.480 29.630 13.54 4.67 0.00 3.02
89 90 8.450578 TCTCTCAAAAGCTTTGTTAATTCTGA 57.549 30.769 13.54 8.95 0.00 3.27
90 91 8.902806 TCTCTCAAAAGCTTTGTTAATTCTGAA 58.097 29.630 13.54 0.00 0.00 3.02
91 92 9.688592 CTCTCAAAAGCTTTGTTAATTCTGAAT 57.311 29.630 13.54 0.00 0.00 2.57
92 93 9.467258 TCTCAAAAGCTTTGTTAATTCTGAATG 57.533 29.630 13.54 2.40 0.00 2.67
93 94 8.075593 TCAAAAGCTTTGTTAATTCTGAATGC 57.924 30.769 13.54 1.33 0.00 3.56
94 95 7.710044 TCAAAAGCTTTGTTAATTCTGAATGCA 59.290 29.630 13.54 0.00 0.00 3.96
95 96 7.647907 AAAGCTTTGTTAATTCTGAATGCAG 57.352 32.000 11.80 0.00 43.67 4.41
104 105 2.090400 TCTGAATGCAGACACAGAGC 57.910 50.000 0.00 0.00 45.88 4.09
105 106 1.345415 TCTGAATGCAGACACAGAGCA 59.655 47.619 0.00 0.00 45.88 4.26
106 107 1.732809 CTGAATGCAGACACAGAGCAG 59.267 52.381 0.00 0.00 45.17 4.24
107 108 1.345415 TGAATGCAGACACAGAGCAGA 59.655 47.619 0.00 0.00 42.14 4.26
108 109 2.224354 TGAATGCAGACACAGAGCAGAA 60.224 45.455 0.00 0.00 42.14 3.02
109 110 2.556144 ATGCAGACACAGAGCAGAAA 57.444 45.000 0.00 0.00 42.14 2.52
110 111 1.875009 TGCAGACACAGAGCAGAAAG 58.125 50.000 0.00 0.00 33.75 2.62
111 112 1.139654 TGCAGACACAGAGCAGAAAGT 59.860 47.619 0.00 0.00 33.75 2.66
112 113 1.530293 GCAGACACAGAGCAGAAAGTG 59.470 52.381 0.00 0.00 37.95 3.16
123 124 1.229428 CAGAAAGTGCTCGCCTTTCA 58.771 50.000 22.70 0.00 46.55 2.69
124 125 1.196354 CAGAAAGTGCTCGCCTTTCAG 59.804 52.381 22.70 16.23 46.55 3.02
125 126 0.110010 GAAAGTGCTCGCCTTTCAGC 60.110 55.000 19.04 0.00 44.56 4.26
126 127 1.518903 AAAGTGCTCGCCTTTCAGCC 61.519 55.000 0.00 0.00 34.47 4.85
127 128 2.359230 GTGCTCGCCTTTCAGCCT 60.359 61.111 0.00 0.00 34.47 4.58
128 129 2.046892 TGCTCGCCTTTCAGCCTC 60.047 61.111 0.00 0.00 34.47 4.70
129 130 2.046892 GCTCGCCTTTCAGCCTCA 60.047 61.111 0.00 0.00 0.00 3.86
130 131 1.451028 GCTCGCCTTTCAGCCTCAT 60.451 57.895 0.00 0.00 0.00 2.90
131 132 1.435408 GCTCGCCTTTCAGCCTCATC 61.435 60.000 0.00 0.00 0.00 2.92
132 133 0.813210 CTCGCCTTTCAGCCTCATCC 60.813 60.000 0.00 0.00 0.00 3.51
133 134 1.078214 CGCCTTTCAGCCTCATCCA 60.078 57.895 0.00 0.00 0.00 3.41
134 135 0.677731 CGCCTTTCAGCCTCATCCAA 60.678 55.000 0.00 0.00 0.00 3.53
135 136 1.549203 GCCTTTCAGCCTCATCCAAA 58.451 50.000 0.00 0.00 0.00 3.28
136 137 1.895131 GCCTTTCAGCCTCATCCAAAA 59.105 47.619 0.00 0.00 0.00 2.44
137 138 2.299867 GCCTTTCAGCCTCATCCAAAAA 59.700 45.455 0.00 0.00 0.00 1.94
138 139 3.055602 GCCTTTCAGCCTCATCCAAAAAT 60.056 43.478 0.00 0.00 0.00 1.82
139 140 4.752146 CCTTTCAGCCTCATCCAAAAATC 58.248 43.478 0.00 0.00 0.00 2.17
140 141 4.465305 CCTTTCAGCCTCATCCAAAAATCT 59.535 41.667 0.00 0.00 0.00 2.40
141 142 5.046807 CCTTTCAGCCTCATCCAAAAATCTT 60.047 40.000 0.00 0.00 0.00 2.40
142 143 6.153340 CCTTTCAGCCTCATCCAAAAATCTTA 59.847 38.462 0.00 0.00 0.00 2.10
143 144 6.515272 TTCAGCCTCATCCAAAAATCTTAC 57.485 37.500 0.00 0.00 0.00 2.34
144 145 5.819991 TCAGCCTCATCCAAAAATCTTACT 58.180 37.500 0.00 0.00 0.00 2.24
145 146 5.882557 TCAGCCTCATCCAAAAATCTTACTC 59.117 40.000 0.00 0.00 0.00 2.59
146 147 5.067023 CAGCCTCATCCAAAAATCTTACTCC 59.933 44.000 0.00 0.00 0.00 3.85
147 148 4.339530 GCCTCATCCAAAAATCTTACTCCC 59.660 45.833 0.00 0.00 0.00 4.30
148 149 5.760131 CCTCATCCAAAAATCTTACTCCCT 58.240 41.667 0.00 0.00 0.00 4.20
149 150 5.825151 CCTCATCCAAAAATCTTACTCCCTC 59.175 44.000 0.00 0.00 0.00 4.30
150 151 5.755849 TCATCCAAAAATCTTACTCCCTCC 58.244 41.667 0.00 0.00 0.00 4.30
151 152 4.216411 TCCAAAAATCTTACTCCCTCCG 57.784 45.455 0.00 0.00 0.00 4.63
152 153 3.585732 TCCAAAAATCTTACTCCCTCCGT 59.414 43.478 0.00 0.00 0.00 4.69
153 154 3.939592 CCAAAAATCTTACTCCCTCCGTC 59.060 47.826 0.00 0.00 0.00 4.79
154 155 3.908643 AAAATCTTACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
155 156 1.400737 AATCTTACTCCCTCCGTCCG 58.599 55.000 0.00 0.00 0.00 4.79
156 157 0.467659 ATCTTACTCCCTCCGTCCGG 60.468 60.000 0.00 0.00 0.00 5.14
157 158 1.077212 CTTACTCCCTCCGTCCGGA 60.077 63.158 0.00 0.00 42.90 5.14
158 159 0.682209 CTTACTCCCTCCGTCCGGAA 60.682 60.000 5.23 0.00 44.66 4.30
159 160 0.032813 TTACTCCCTCCGTCCGGAAT 60.033 55.000 5.23 0.00 44.66 3.01
160 161 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
161 162 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
162 163 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
163 164 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
164 165 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
165 166 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
166 167 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
167 168 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
168 169 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
169 170 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
170 171 1.717194 GTCCGGAATTACTTGTCGCA 58.283 50.000 5.23 0.00 0.00 5.10
171 172 2.277084 GTCCGGAATTACTTGTCGCAT 58.723 47.619 5.23 0.00 0.00 4.73
172 173 3.450578 GTCCGGAATTACTTGTCGCATA 58.549 45.455 5.23 0.00 0.00 3.14
173 174 3.866910 GTCCGGAATTACTTGTCGCATAA 59.133 43.478 5.23 0.00 0.00 1.90
174 175 4.330620 GTCCGGAATTACTTGTCGCATAAA 59.669 41.667 5.23 0.00 0.00 1.40
175 176 5.007332 GTCCGGAATTACTTGTCGCATAAAT 59.993 40.000 5.23 0.00 0.00 1.40
176 177 5.007234 TCCGGAATTACTTGTCGCATAAATG 59.993 40.000 0.00 0.00 0.00 2.32
177 178 5.204833 CGGAATTACTTGTCGCATAAATGG 58.795 41.667 0.00 0.00 0.00 3.16
178 179 5.007234 CGGAATTACTTGTCGCATAAATGGA 59.993 40.000 0.00 0.00 0.00 3.41
179 180 6.293407 CGGAATTACTTGTCGCATAAATGGAT 60.293 38.462 0.00 0.00 0.00 3.41
180 181 7.095397 CGGAATTACTTGTCGCATAAATGGATA 60.095 37.037 0.00 0.00 0.00 2.59
181 182 8.564574 GGAATTACTTGTCGCATAAATGGATAA 58.435 33.333 0.00 0.00 0.00 1.75
182 183 9.944663 GAATTACTTGTCGCATAAATGGATAAA 57.055 29.630 0.00 0.00 0.00 1.40
231 232 6.332735 TGTCTAGATACATCCATTTCTCCG 57.667 41.667 0.00 0.00 0.00 4.63
232 233 6.068670 TGTCTAGATACATCCATTTCTCCGA 58.931 40.000 0.00 0.00 0.00 4.55
233 234 6.016192 TGTCTAGATACATCCATTTCTCCGAC 60.016 42.308 0.00 0.00 0.00 4.79
234 235 6.016192 GTCTAGATACATCCATTTCTCCGACA 60.016 42.308 0.00 0.00 0.00 4.35
235 236 5.614324 AGATACATCCATTTCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
236 237 5.360591 AGATACATCCATTTCTCCGACAAC 58.639 41.667 0.00 0.00 0.00 3.32
237 238 3.703001 ACATCCATTTCTCCGACAACT 57.297 42.857 0.00 0.00 0.00 3.16
238 239 4.819105 ACATCCATTTCTCCGACAACTA 57.181 40.909 0.00 0.00 0.00 2.24
239 240 5.359194 ACATCCATTTCTCCGACAACTAT 57.641 39.130 0.00 0.00 0.00 2.12
240 241 5.745227 ACATCCATTTCTCCGACAACTATT 58.255 37.500 0.00 0.00 0.00 1.73
241 242 6.180472 ACATCCATTTCTCCGACAACTATTT 58.820 36.000 0.00 0.00 0.00 1.40
242 243 6.659242 ACATCCATTTCTCCGACAACTATTTT 59.341 34.615 0.00 0.00 0.00 1.82
243 244 6.737254 TCCATTTCTCCGACAACTATTTTC 57.263 37.500 0.00 0.00 0.00 2.29
244 245 5.350365 TCCATTTCTCCGACAACTATTTTCG 59.650 40.000 0.00 0.00 0.00 3.46
250 251 2.598589 CGACAACTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
251 252 2.597305 CGACAACTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
252 253 2.928116 GACAACTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
253 254 2.277084 CAACTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
254 255 1.856629 ACTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
255 256 1.755380 ACTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
256 257 1.755380 CTATTTTCGGACGGAGGGAGT 59.245 52.381 0.00 0.00 0.00 3.85
257 258 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
258 259 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
259 260 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
260 261 0.911769 TTCGGACGGAGGGAGTACTA 59.088 55.000 0.00 0.00 0.00 1.82
261 262 0.911769 TCGGACGGAGGGAGTACTAA 59.088 55.000 0.00 0.00 0.00 2.24
262 263 1.281867 TCGGACGGAGGGAGTACTAAA 59.718 52.381 0.00 0.00 0.00 1.85
263 264 2.094675 CGGACGGAGGGAGTACTAAAA 58.905 52.381 0.00 0.00 0.00 1.52
264 265 2.493278 CGGACGGAGGGAGTACTAAAAA 59.507 50.000 0.00 0.00 0.00 1.94
286 287 8.664669 AAAAATAACCATCCAACTCACCTAAT 57.335 30.769 0.00 0.00 0.00 1.73
287 288 9.762381 AAAAATAACCATCCAACTCACCTAATA 57.238 29.630 0.00 0.00 0.00 0.98
288 289 8.980481 AAATAACCATCCAACTCACCTAATAG 57.020 34.615 0.00 0.00 0.00 1.73
289 290 4.423625 ACCATCCAACTCACCTAATAGC 57.576 45.455 0.00 0.00 0.00 2.97
290 291 3.136626 ACCATCCAACTCACCTAATAGCC 59.863 47.826 0.00 0.00 0.00 3.93
291 292 3.496870 CCATCCAACTCACCTAATAGCCC 60.497 52.174 0.00 0.00 0.00 5.19
292 293 2.840511 TCCAACTCACCTAATAGCCCA 58.159 47.619 0.00 0.00 0.00 5.36
293 294 3.393687 TCCAACTCACCTAATAGCCCAT 58.606 45.455 0.00 0.00 0.00 4.00
294 295 3.785887 TCCAACTCACCTAATAGCCCATT 59.214 43.478 0.00 0.00 0.00 3.16
295 296 3.885297 CCAACTCACCTAATAGCCCATTG 59.115 47.826 0.00 0.00 0.00 2.82
296 297 4.526970 CAACTCACCTAATAGCCCATTGT 58.473 43.478 0.00 0.00 0.00 2.71
297 298 5.397447 CCAACTCACCTAATAGCCCATTGTA 60.397 44.000 0.00 0.00 0.00 2.41
298 299 5.968676 ACTCACCTAATAGCCCATTGTAA 57.031 39.130 0.00 0.00 0.00 2.41
299 300 5.930135 ACTCACCTAATAGCCCATTGTAAG 58.070 41.667 0.00 0.00 0.00 2.34
300 301 4.714632 TCACCTAATAGCCCATTGTAAGC 58.285 43.478 0.00 0.00 0.00 3.09
301 302 3.821033 CACCTAATAGCCCATTGTAAGCC 59.179 47.826 0.00 0.00 0.00 4.35
302 303 3.461831 ACCTAATAGCCCATTGTAAGCCA 59.538 43.478 0.00 0.00 0.00 4.75
303 304 4.106341 ACCTAATAGCCCATTGTAAGCCAT 59.894 41.667 0.00 0.00 0.00 4.40
304 305 4.702131 CCTAATAGCCCATTGTAAGCCATC 59.298 45.833 0.00 0.00 0.00 3.51
305 306 3.882102 ATAGCCCATTGTAAGCCATCA 57.118 42.857 0.00 0.00 0.00 3.07
306 307 2.761786 AGCCCATTGTAAGCCATCAT 57.238 45.000 0.00 0.00 0.00 2.45
307 308 3.882102 AGCCCATTGTAAGCCATCATA 57.118 42.857 0.00 0.00 0.00 2.15
308 309 4.393239 AGCCCATTGTAAGCCATCATAT 57.607 40.909 0.00 0.00 0.00 1.78
309 310 4.744237 AGCCCATTGTAAGCCATCATATT 58.256 39.130 0.00 0.00 0.00 1.28
310 311 5.149976 AGCCCATTGTAAGCCATCATATTT 58.850 37.500 0.00 0.00 0.00 1.40
311 312 6.314120 AGCCCATTGTAAGCCATCATATTTA 58.686 36.000 0.00 0.00 0.00 1.40
312 313 6.782000 AGCCCATTGTAAGCCATCATATTTAA 59.218 34.615 0.00 0.00 0.00 1.52
313 314 7.455638 AGCCCATTGTAAGCCATCATATTTAAT 59.544 33.333 0.00 0.00 0.00 1.40
314 315 7.761249 GCCCATTGTAAGCCATCATATTTAATC 59.239 37.037 0.00 0.00 0.00 1.75
315 316 8.805175 CCCATTGTAAGCCATCATATTTAATCA 58.195 33.333 0.00 0.00 0.00 2.57
347 348 6.442513 AAATTAGTCATGCTTAAGTGAGCC 57.557 37.500 4.02 0.00 42.01 4.70
348 349 4.551702 TTAGTCATGCTTAAGTGAGCCA 57.448 40.909 4.02 0.00 42.01 4.75
349 350 2.704572 AGTCATGCTTAAGTGAGCCAC 58.295 47.619 4.02 0.00 42.01 5.01
350 351 2.038952 AGTCATGCTTAAGTGAGCCACA 59.961 45.455 4.02 0.00 42.01 4.17
360 361 1.373570 GTGAGCCACACCTCTATTGC 58.626 55.000 0.85 0.00 43.05 3.56
361 362 0.253044 TGAGCCACACCTCTATTGCC 59.747 55.000 0.00 0.00 33.02 4.52
362 363 0.253044 GAGCCACACCTCTATTGCCA 59.747 55.000 0.00 0.00 0.00 4.92
363 364 0.698238 AGCCACACCTCTATTGCCAA 59.302 50.000 0.00 0.00 0.00 4.52
364 365 1.075374 AGCCACACCTCTATTGCCAAA 59.925 47.619 0.00 0.00 0.00 3.28
365 366 1.892474 GCCACACCTCTATTGCCAAAA 59.108 47.619 0.00 0.00 0.00 2.44
366 367 2.497273 GCCACACCTCTATTGCCAAAAT 59.503 45.455 0.00 0.00 0.00 1.82
367 368 3.055891 GCCACACCTCTATTGCCAAAATT 60.056 43.478 0.00 0.00 0.00 1.82
368 369 4.563374 GCCACACCTCTATTGCCAAAATTT 60.563 41.667 0.00 0.00 0.00 1.82
369 370 5.337169 GCCACACCTCTATTGCCAAAATTTA 60.337 40.000 0.00 0.00 0.00 1.40
370 371 6.332630 CCACACCTCTATTGCCAAAATTTAG 58.667 40.000 0.00 0.00 0.00 1.85
371 372 5.807011 CACACCTCTATTGCCAAAATTTAGC 59.193 40.000 6.24 6.24 0.00 3.09
372 373 5.716703 ACACCTCTATTGCCAAAATTTAGCT 59.283 36.000 12.74 0.00 0.00 3.32
373 374 6.889722 ACACCTCTATTGCCAAAATTTAGCTA 59.110 34.615 12.74 7.07 0.00 3.32
374 375 7.396055 ACACCTCTATTGCCAAAATTTAGCTAA 59.604 33.333 0.86 0.86 0.00 3.09
375 376 8.416329 CACCTCTATTGCCAAAATTTAGCTAAT 58.584 33.333 7.08 12.11 0.00 1.73
376 377 8.633561 ACCTCTATTGCCAAAATTTAGCTAATC 58.366 33.333 7.08 0.00 0.00 1.75
377 378 8.632679 CCTCTATTGCCAAAATTTAGCTAATCA 58.367 33.333 7.08 0.00 0.00 2.57
412 413 3.874392 GCTTTGGTTGTAAGCCATCAT 57.126 42.857 0.00 0.00 41.62 2.45
413 414 4.981806 GCTTTGGTTGTAAGCCATCATA 57.018 40.909 0.00 0.00 41.62 2.15
414 415 5.520376 GCTTTGGTTGTAAGCCATCATAT 57.480 39.130 0.00 0.00 41.62 1.78
415 416 5.906073 GCTTTGGTTGTAAGCCATCATATT 58.094 37.500 0.00 0.00 41.62 1.28
416 417 6.340522 GCTTTGGTTGTAAGCCATCATATTT 58.659 36.000 0.00 0.00 41.62 1.40
417 418 7.488322 GCTTTGGTTGTAAGCCATCATATTTA 58.512 34.615 0.00 0.00 41.62 1.40
418 419 7.978975 GCTTTGGTTGTAAGCCATCATATTTAA 59.021 33.333 0.00 0.00 41.62 1.52
421 422 8.759481 TGGTTGTAAGCCATCATATTTAATCA 57.241 30.769 0.00 0.00 0.00 2.57
422 423 9.194972 TGGTTGTAAGCCATCATATTTAATCAA 57.805 29.630 0.00 0.00 0.00 2.57
452 453 7.611213 TTAAATTAGTCCTGCTTAAGTGAGC 57.389 36.000 4.02 0.00 43.00 4.26
453 454 3.611766 TTAGTCCTGCTTAAGTGAGCC 57.388 47.619 4.02 0.00 42.01 4.70
454 455 1.352083 AGTCCTGCTTAAGTGAGCCA 58.648 50.000 4.02 0.00 42.01 4.75
455 456 1.002544 AGTCCTGCTTAAGTGAGCCAC 59.997 52.381 4.02 0.00 42.01 5.01
456 457 1.055849 TCCTGCTTAAGTGAGCCACA 58.944 50.000 4.02 0.00 42.01 4.17
466 467 1.373570 GTGAGCCACACCTCTATTGC 58.626 55.000 0.85 0.00 43.05 3.56
467 468 0.253044 TGAGCCACACCTCTATTGCC 59.747 55.000 0.00 0.00 33.02 4.52
468 469 0.253044 GAGCCACACCTCTATTGCCA 59.747 55.000 0.00 0.00 0.00 4.92
469 470 0.698238 AGCCACACCTCTATTGCCAA 59.302 50.000 0.00 0.00 0.00 4.52
470 471 1.075374 AGCCACACCTCTATTGCCAAA 59.925 47.619 0.00 0.00 0.00 3.28
471 472 1.892474 GCCACACCTCTATTGCCAAAA 59.108 47.619 0.00 0.00 0.00 2.44
472 473 2.352715 GCCACACCTCTATTGCCAAAAC 60.353 50.000 0.00 0.00 0.00 2.43
473 474 3.157087 CCACACCTCTATTGCCAAAACT 58.843 45.455 0.00 0.00 0.00 2.66
474 475 3.573967 CCACACCTCTATTGCCAAAACTT 59.426 43.478 0.00 0.00 0.00 2.66
475 476 4.764823 CCACACCTCTATTGCCAAAACTTA 59.235 41.667 0.00 0.00 0.00 2.24
476 477 5.106157 CCACACCTCTATTGCCAAAACTTAG 60.106 44.000 0.00 0.00 0.00 2.18
477 478 4.459337 ACACCTCTATTGCCAAAACTTAGC 59.541 41.667 0.00 0.00 0.00 3.09
478 479 4.702131 CACCTCTATTGCCAAAACTTAGCT 59.298 41.667 0.00 0.00 0.00 3.32
479 480 5.880332 CACCTCTATTGCCAAAACTTAGCTA 59.120 40.000 0.00 0.00 0.00 3.32
480 481 6.374333 CACCTCTATTGCCAAAACTTAGCTAA 59.626 38.462 5.94 5.94 0.00 3.09
481 482 7.067494 CACCTCTATTGCCAAAACTTAGCTAAT 59.933 37.037 6.64 0.00 0.00 1.73
482 483 7.283354 ACCTCTATTGCCAAAACTTAGCTAATC 59.717 37.037 6.64 0.00 0.00 1.75
483 484 7.283127 CCTCTATTGCCAAAACTTAGCTAATCA 59.717 37.037 6.64 0.00 0.00 2.57
484 485 8.574251 TCTATTGCCAAAACTTAGCTAATCAA 57.426 30.769 6.64 3.94 0.00 2.57
485 486 9.019656 TCTATTGCCAAAACTTAGCTAATCAAA 57.980 29.630 6.64 0.00 0.00 2.69
486 487 9.638239 CTATTGCCAAAACTTAGCTAATCAAAA 57.362 29.630 6.64 0.00 0.00 2.44
489 490 9.988815 TTGCCAAAACTTAGCTAATCAAAATAA 57.011 25.926 6.64 0.00 0.00 1.40
509 510 9.665719 AAAATAATTATGTTAGCTTTGGTTGGG 57.334 29.630 0.00 0.00 0.00 4.12
510 511 8.602472 AATAATTATGTTAGCTTTGGTTGGGA 57.398 30.769 0.00 0.00 0.00 4.37
511 512 8.782137 ATAATTATGTTAGCTTTGGTTGGGAT 57.218 30.769 0.00 0.00 0.00 3.85
512 513 9.875708 ATAATTATGTTAGCTTTGGTTGGGATA 57.124 29.630 0.00 0.00 0.00 2.59
513 514 7.582667 ATTATGTTAGCTTTGGTTGGGATAC 57.417 36.000 0.00 0.00 0.00 2.24
514 515 4.650972 TGTTAGCTTTGGTTGGGATACT 57.349 40.909 0.00 0.00 0.00 2.12
515 516 5.765576 TGTTAGCTTTGGTTGGGATACTA 57.234 39.130 0.00 0.00 0.00 1.82
516 517 6.129414 TGTTAGCTTTGGTTGGGATACTAA 57.871 37.500 0.00 0.00 32.98 2.24
517 518 6.544650 TGTTAGCTTTGGTTGGGATACTAAA 58.455 36.000 0.00 0.00 39.52 1.85
518 519 6.657541 TGTTAGCTTTGGTTGGGATACTAAAG 59.342 38.462 0.00 7.87 44.61 1.85
519 520 5.256806 AGCTTTGGTTGGGATACTAAAGT 57.743 39.130 12.18 0.00 44.04 2.66
520 521 5.641155 AGCTTTGGTTGGGATACTAAAGTT 58.359 37.500 12.18 5.62 44.04 2.66
521 522 5.710567 AGCTTTGGTTGGGATACTAAAGTTC 59.289 40.000 12.18 0.59 44.04 3.01
522 523 5.105877 GCTTTGGTTGGGATACTAAAGTTCC 60.106 44.000 12.18 0.00 44.04 3.62
523 524 5.586155 TTGGTTGGGATACTAAAGTTCCA 57.414 39.130 11.12 5.18 39.52 3.53
524 525 5.789574 TGGTTGGGATACTAAAGTTCCAT 57.210 39.130 11.12 0.00 39.52 3.41
525 526 5.751586 TGGTTGGGATACTAAAGTTCCATC 58.248 41.667 11.12 6.55 39.52 3.51
526 527 5.131067 GGTTGGGATACTAAAGTTCCATCC 58.869 45.833 11.12 7.42 39.52 3.51
527 528 5.104067 GGTTGGGATACTAAAGTTCCATCCT 60.104 44.000 9.28 0.00 39.52 3.24
528 529 6.424032 GTTGGGATACTAAAGTTCCATCCTT 58.576 40.000 9.28 0.00 39.52 3.36
529 530 6.248569 TGGGATACTAAAGTTCCATCCTTC 57.751 41.667 9.28 0.00 33.37 3.46
530 531 5.163343 TGGGATACTAAAGTTCCATCCTTCG 60.163 44.000 9.28 0.00 33.37 3.79
531 532 5.163332 GGGATACTAAAGTTCCATCCTTCGT 60.163 44.000 9.28 0.00 33.37 3.85
532 533 6.346896 GGATACTAAAGTTCCATCCTTCGTT 58.653 40.000 3.97 0.00 31.27 3.85
533 534 6.479331 GGATACTAAAGTTCCATCCTTCGTTC 59.521 42.308 3.97 0.00 31.27 3.95
534 535 5.485209 ACTAAAGTTCCATCCTTCGTTCT 57.515 39.130 0.00 0.00 0.00 3.01
535 536 6.600882 ACTAAAGTTCCATCCTTCGTTCTA 57.399 37.500 0.00 0.00 0.00 2.10
536 537 7.001099 ACTAAAGTTCCATCCTTCGTTCTAA 57.999 36.000 0.00 0.00 0.00 2.10
537 538 7.447594 ACTAAAGTTCCATCCTTCGTTCTAAA 58.552 34.615 0.00 0.00 0.00 1.85
538 539 8.101419 ACTAAAGTTCCATCCTTCGTTCTAAAT 58.899 33.333 0.00 0.00 0.00 1.40
539 540 7.761038 AAAGTTCCATCCTTCGTTCTAAATT 57.239 32.000 0.00 0.00 0.00 1.82
540 541 8.857694 AAAGTTCCATCCTTCGTTCTAAATTA 57.142 30.769 0.00 0.00 0.00 1.40
541 542 8.857694 AAGTTCCATCCTTCGTTCTAAATTAA 57.142 30.769 0.00 0.00 0.00 1.40
542 543 9.462606 AAGTTCCATCCTTCGTTCTAAATTAAT 57.537 29.630 0.00 0.00 0.00 1.40
543 544 9.462606 AGTTCCATCCTTCGTTCTAAATTAATT 57.537 29.630 0.00 0.00 0.00 1.40
544 545 9.717892 GTTCCATCCTTCGTTCTAAATTAATTC 57.282 33.333 0.10 0.00 0.00 2.17
545 546 8.138365 TCCATCCTTCGTTCTAAATTAATTCG 57.862 34.615 0.10 0.64 0.00 3.34
546 547 7.225931 TCCATCCTTCGTTCTAAATTAATTCGG 59.774 37.037 0.10 0.00 0.00 4.30
547 548 7.225931 CCATCCTTCGTTCTAAATTAATTCGGA 59.774 37.037 0.10 0.46 0.00 4.55
548 549 8.774586 CATCCTTCGTTCTAAATTAATTCGGAT 58.225 33.333 0.10 0.00 0.00 4.18
549 550 9.991906 ATCCTTCGTTCTAAATTAATTCGGATA 57.008 29.630 0.10 0.00 0.00 2.59
550 551 9.252962 TCCTTCGTTCTAAATTAATTCGGATAC 57.747 33.333 0.10 4.29 0.00 2.24
551 552 9.257651 CCTTCGTTCTAAATTAATTCGGATACT 57.742 33.333 0.10 0.00 0.00 2.12
566 567 8.664211 ATTCGGATACTAAAGTTCCATTCTTC 57.336 34.615 10.13 0.00 0.00 2.87
567 568 6.270815 TCGGATACTAAAGTTCCATTCTTCG 58.729 40.000 10.13 0.00 0.00 3.79
568 569 6.040878 CGGATACTAAAGTTCCATTCTTCGT 58.959 40.000 10.13 0.00 0.00 3.85
569 570 6.534079 CGGATACTAAAGTTCCATTCTTCGTT 59.466 38.462 10.13 0.00 0.00 3.85
570 571 7.064253 CGGATACTAAAGTTCCATTCTTCGTTT 59.936 37.037 10.13 0.00 0.00 3.60
571 572 8.727910 GGATACTAAAGTTCCATTCTTCGTTTT 58.272 33.333 0.00 0.00 0.00 2.43
587 588 9.902196 TTCTTCGTTTTAAATTAATTGACCTCC 57.098 29.630 0.39 0.00 0.00 4.30
588 589 9.069082 TCTTCGTTTTAAATTAATTGACCTCCA 57.931 29.630 0.39 0.00 0.00 3.86
589 590 9.855021 CTTCGTTTTAAATTAATTGACCTCCAT 57.145 29.630 0.39 0.00 0.00 3.41
601 602 7.923414 AATTGACCTCCATTTAACTAGACAC 57.077 36.000 0.00 0.00 0.00 3.67
602 603 5.068234 TGACCTCCATTTAACTAGACACG 57.932 43.478 0.00 0.00 0.00 4.49
603 604 4.768448 TGACCTCCATTTAACTAGACACGA 59.232 41.667 0.00 0.00 0.00 4.35
604 605 5.244402 TGACCTCCATTTAACTAGACACGAA 59.756 40.000 0.00 0.00 0.00 3.85
605 606 6.070995 TGACCTCCATTTAACTAGACACGAAT 60.071 38.462 0.00 0.00 0.00 3.34
606 607 7.123098 TGACCTCCATTTAACTAGACACGAATA 59.877 37.037 0.00 0.00 0.00 1.75
607 608 8.019656 ACCTCCATTTAACTAGACACGAATAT 57.980 34.615 0.00 0.00 0.00 1.28
608 609 9.139734 ACCTCCATTTAACTAGACACGAATATA 57.860 33.333 0.00 0.00 0.00 0.86
622 623 8.647796 AGACACGAATATATTAATTGACCTCCA 58.352 33.333 0.00 0.00 0.00 3.86
623 624 9.436957 GACACGAATATATTAATTGACCTCCAT 57.563 33.333 0.00 0.00 0.00 3.41
624 625 9.793259 ACACGAATATATTAATTGACCTCCATT 57.207 29.630 0.00 0.00 0.00 3.16
635 636 7.923414 AATTGACCTCCATTTAACTAGACAC 57.077 36.000 0.00 0.00 0.00 3.67
636 637 5.068234 TGACCTCCATTTAACTAGACACG 57.932 43.478 0.00 0.00 0.00 4.49
637 638 4.768448 TGACCTCCATTTAACTAGACACGA 59.232 41.667 0.00 0.00 0.00 4.35
638 639 5.244402 TGACCTCCATTTAACTAGACACGAA 59.756 40.000 0.00 0.00 0.00 3.85
639 640 6.070995 TGACCTCCATTTAACTAGACACGAAT 60.071 38.462 0.00 0.00 0.00 3.34
640 641 7.123098 TGACCTCCATTTAACTAGACACGAATA 59.877 37.037 0.00 0.00 0.00 1.75
641 642 8.019656 ACCTCCATTTAACTAGACACGAATAT 57.980 34.615 0.00 0.00 0.00 1.28
642 643 9.139734 ACCTCCATTTAACTAGACACGAATATA 57.860 33.333 0.00 0.00 0.00 0.86
697 698 8.758829 TCTTAGCTAGTCAATCAAATGGAAGTA 58.241 33.333 0.00 0.00 0.00 2.24
708 709 8.991026 CAATCAAATGGAAGTAAAGCAATTTGA 58.009 29.630 10.12 10.12 43.93 2.69
719 720 7.262048 AGTAAAGCAATTTGAAACGAAGGAAA 58.738 30.769 0.00 0.00 0.00 3.13
729 730 7.695480 TTGAAACGAAGGAAATATGAATGGA 57.305 32.000 0.00 0.00 0.00 3.41
968 976 5.013183 AGCTTTCTACCCTAGCAGAGAAAAA 59.987 40.000 10.53 0.00 37.44 1.94
1210 1219 1.067821 AGTTCCTCGATCCGATCAAGC 59.932 52.381 9.07 0.00 34.61 4.01
1261 1270 0.392461 TGCCTGGCTACGGAATGAAC 60.392 55.000 21.03 0.00 0.00 3.18
1320 1329 4.229812 TGTGGATCTTGGTCTAGGTCTAGA 59.770 45.833 3.76 3.76 39.67 2.43
1335 1344 8.441572 TCTAGGTCTAGAGCTTTACATGTCTAT 58.558 37.037 28.17 3.44 40.09 1.98
1336 1345 7.283625 AGGTCTAGAGCTTTACATGTCTATG 57.716 40.000 18.72 0.00 36.73 2.23
1337 1346 6.836527 AGGTCTAGAGCTTTACATGTCTATGT 59.163 38.462 18.72 0.00 42.30 2.29
1338 1347 7.343316 AGGTCTAGAGCTTTACATGTCTATGTT 59.657 37.037 18.72 0.00 40.99 2.71
1339 1348 7.982354 GGTCTAGAGCTTTACATGTCTATGTTT 59.018 37.037 14.73 0.00 45.01 2.83
1372 1381 5.011431 TGCTGGATTGAATACGATCTGATCT 59.989 40.000 15.16 5.65 37.17 2.75
1375 1384 5.221501 TGGATTGAATACGATCTGATCTGCA 60.222 40.000 15.16 3.22 37.17 4.41
1376 1385 5.348179 GGATTGAATACGATCTGATCTGCAG 59.652 44.000 7.63 7.63 46.31 4.41
1378 1387 4.864633 TGAATACGATCTGATCTGCAGTC 58.135 43.478 14.67 11.14 45.14 3.51
1564 1577 8.531982 TGATCTTAAAGTTAGCTGTCAGTGTAT 58.468 33.333 0.00 0.00 0.00 2.29
1617 1630 2.103373 GGACTCTGGTATCAGCTCACA 58.897 52.381 0.00 0.00 40.69 3.58
1644 1657 9.177608 TGAGATGTATTGGGAATTTTAACTCAG 57.822 33.333 0.00 0.00 0.00 3.35
1645 1658 9.178758 GAGATGTATTGGGAATTTTAACTCAGT 57.821 33.333 0.00 0.00 0.00 3.41
1647 1660 7.696992 TGTATTGGGAATTTTAACTCAGTCC 57.303 36.000 0.00 0.00 0.00 3.85
1648 1661 5.897377 ATTGGGAATTTTAACTCAGTCCG 57.103 39.130 0.00 0.00 0.00 4.79
1671 1684 0.250252 GCCTGGAGCTGCTAGAATCC 60.250 60.000 6.82 0.00 38.99 3.01
1736 1749 8.435187 ACATATCTGCTGGAAAATAGAGATGAA 58.565 33.333 12.84 0.00 39.82 2.57
1885 1913 6.954487 TTCCTTTAAAACCAGGAGAAACTC 57.046 37.500 0.00 0.00 40.43 3.01
1890 1918 3.679824 AAACCAGGAGAAACTCGGTAG 57.320 47.619 0.00 0.00 0.00 3.18
2027 2055 7.811713 GCAAGGAAAATATCATGAGCTTAATCC 59.188 37.037 0.09 8.61 0.00 3.01
2129 2159 5.263968 TGTGCAAGTCTACTAATAGAGGC 57.736 43.478 0.00 0.00 38.14 4.70
2219 2249 4.877378 TCTGCAAATGCCTCAAGATTTT 57.123 36.364 2.46 0.00 41.18 1.82
2233 2263 7.922811 GCCTCAAGATTTTTCATACCCTATTTG 59.077 37.037 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.537728 TTCATAAAAGGGTATCATGCTTCAAT 57.462 30.769 0.00 0.00 0.00 2.57
8 9 7.953005 TTCATAAAAGGGTATCATGCTTCAA 57.047 32.000 0.00 0.00 0.00 2.69
9 10 7.953005 TTTCATAAAAGGGTATCATGCTTCA 57.047 32.000 0.00 0.00 0.00 3.02
13 14 9.988350 CGTATATTTCATAAAAGGGTATCATGC 57.012 33.333 0.00 0.00 0.00 4.06
62 63 9.520204 CAGAATTAACAAAGCTTTTGAGAGAAA 57.480 29.630 9.53 0.00 0.00 2.52
63 64 8.902806 TCAGAATTAACAAAGCTTTTGAGAGAA 58.097 29.630 9.53 0.00 0.00 2.87
64 65 8.450578 TCAGAATTAACAAAGCTTTTGAGAGA 57.549 30.769 9.53 0.00 0.00 3.10
65 66 9.688592 ATTCAGAATTAACAAAGCTTTTGAGAG 57.311 29.630 9.53 0.00 0.00 3.20
66 67 9.467258 CATTCAGAATTAACAAAGCTTTTGAGA 57.533 29.630 9.53 0.00 0.00 3.27
67 68 8.219105 GCATTCAGAATTAACAAAGCTTTTGAG 58.781 33.333 9.53 0.74 0.00 3.02
68 69 7.710044 TGCATTCAGAATTAACAAAGCTTTTGA 59.290 29.630 9.53 5.40 0.00 2.69
69 70 7.853524 TGCATTCAGAATTAACAAAGCTTTTG 58.146 30.769 9.53 7.95 0.00 2.44
70 71 7.927629 TCTGCATTCAGAATTAACAAAGCTTTT 59.072 29.630 9.53 0.00 45.69 2.27
71 72 7.436118 TCTGCATTCAGAATTAACAAAGCTTT 58.564 30.769 5.69 5.69 45.69 3.51
72 73 6.985117 TCTGCATTCAGAATTAACAAAGCTT 58.015 32.000 0.00 0.00 45.69 3.74
73 74 6.579666 TCTGCATTCAGAATTAACAAAGCT 57.420 33.333 0.00 0.00 45.69 3.74
85 86 1.345415 TGCTCTGTGTCTGCATTCAGA 59.655 47.619 0.00 0.00 46.43 3.27
86 87 1.732809 CTGCTCTGTGTCTGCATTCAG 59.267 52.381 0.00 0.00 41.67 3.02
87 88 1.345415 TCTGCTCTGTGTCTGCATTCA 59.655 47.619 0.00 0.00 36.07 2.57
88 89 2.090400 TCTGCTCTGTGTCTGCATTC 57.910 50.000 0.00 0.00 36.07 2.67
89 90 2.556144 TTCTGCTCTGTGTCTGCATT 57.444 45.000 0.00 0.00 36.07 3.56
90 91 2.224475 ACTTTCTGCTCTGTGTCTGCAT 60.224 45.455 0.00 0.00 36.07 3.96
91 92 1.139654 ACTTTCTGCTCTGTGTCTGCA 59.860 47.619 0.00 0.00 35.30 4.41
92 93 1.530293 CACTTTCTGCTCTGTGTCTGC 59.470 52.381 0.00 0.00 0.00 4.26
93 94 1.530293 GCACTTTCTGCTCTGTGTCTG 59.470 52.381 0.00 0.00 43.33 3.51
94 95 1.876322 GCACTTTCTGCTCTGTGTCT 58.124 50.000 0.00 0.00 43.33 3.41
103 104 0.110010 GAAAGGCGAGCACTTTCTGC 60.110 55.000 21.01 0.00 46.35 4.26
107 108 1.952263 GCTGAAAGGCGAGCACTTT 59.048 52.632 9.97 9.97 40.61 2.66
108 109 3.660621 GCTGAAAGGCGAGCACTT 58.339 55.556 0.00 0.00 35.15 3.16
117 118 4.465305 AGATTTTTGGATGAGGCTGAAAGG 59.535 41.667 0.00 0.00 0.00 3.11
118 119 5.656213 AGATTTTTGGATGAGGCTGAAAG 57.344 39.130 0.00 0.00 0.00 2.62
119 120 6.721208 AGTAAGATTTTTGGATGAGGCTGAAA 59.279 34.615 0.00 0.00 0.00 2.69
120 121 6.248433 AGTAAGATTTTTGGATGAGGCTGAA 58.752 36.000 0.00 0.00 0.00 3.02
121 122 5.819991 AGTAAGATTTTTGGATGAGGCTGA 58.180 37.500 0.00 0.00 0.00 4.26
122 123 5.067023 GGAGTAAGATTTTTGGATGAGGCTG 59.933 44.000 0.00 0.00 0.00 4.85
123 124 5.196695 GGAGTAAGATTTTTGGATGAGGCT 58.803 41.667 0.00 0.00 0.00 4.58
124 125 4.339530 GGGAGTAAGATTTTTGGATGAGGC 59.660 45.833 0.00 0.00 0.00 4.70
125 126 5.760131 AGGGAGTAAGATTTTTGGATGAGG 58.240 41.667 0.00 0.00 0.00 3.86
126 127 5.825151 GGAGGGAGTAAGATTTTTGGATGAG 59.175 44.000 0.00 0.00 0.00 2.90
127 128 5.629133 CGGAGGGAGTAAGATTTTTGGATGA 60.629 44.000 0.00 0.00 0.00 2.92
128 129 4.576463 CGGAGGGAGTAAGATTTTTGGATG 59.424 45.833 0.00 0.00 0.00 3.51
129 130 4.227527 ACGGAGGGAGTAAGATTTTTGGAT 59.772 41.667 0.00 0.00 0.00 3.41
130 131 3.585732 ACGGAGGGAGTAAGATTTTTGGA 59.414 43.478 0.00 0.00 0.00 3.53
131 132 3.939592 GACGGAGGGAGTAAGATTTTTGG 59.060 47.826 0.00 0.00 0.00 3.28
132 133 3.939592 GGACGGAGGGAGTAAGATTTTTG 59.060 47.826 0.00 0.00 0.00 2.44
133 134 3.369157 CGGACGGAGGGAGTAAGATTTTT 60.369 47.826 0.00 0.00 0.00 1.94
134 135 2.167900 CGGACGGAGGGAGTAAGATTTT 59.832 50.000 0.00 0.00 0.00 1.82
135 136 1.755380 CGGACGGAGGGAGTAAGATTT 59.245 52.381 0.00 0.00 0.00 2.17
136 137 1.400737 CGGACGGAGGGAGTAAGATT 58.599 55.000 0.00 0.00 0.00 2.40
137 138 0.467659 CCGGACGGAGGGAGTAAGAT 60.468 60.000 4.40 0.00 37.50 2.40
138 139 1.077212 CCGGACGGAGGGAGTAAGA 60.077 63.158 4.40 0.00 37.50 2.10
139 140 0.682209 TTCCGGACGGAGGGAGTAAG 60.682 60.000 13.64 0.00 46.06 2.34
140 141 0.032813 ATTCCGGACGGAGGGAGTAA 60.033 55.000 13.64 0.00 46.06 2.24
141 142 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
142 143 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
143 144 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
144 145 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
145 146 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
146 147 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
147 148 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
148 149 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
149 150 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
150 151 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
151 152 1.717194 TGCGACAAGTAATTCCGGAC 58.283 50.000 1.83 0.00 0.00 4.79
152 153 2.684001 ATGCGACAAGTAATTCCGGA 57.316 45.000 0.00 0.00 0.00 5.14
153 154 4.868450 TTTATGCGACAAGTAATTCCGG 57.132 40.909 0.00 0.00 0.00 5.14
154 155 5.007234 TCCATTTATGCGACAAGTAATTCCG 59.993 40.000 0.00 0.00 0.00 4.30
155 156 6.371809 TCCATTTATGCGACAAGTAATTCC 57.628 37.500 0.00 0.00 0.00 3.01
156 157 9.944663 TTTATCCATTTATGCGACAAGTAATTC 57.055 29.630 0.00 0.00 0.00 2.17
205 206 8.690884 CGGAGAAATGGATGTATCTAGACATAT 58.309 37.037 0.00 0.00 40.18 1.78
206 207 7.888546 TCGGAGAAATGGATGTATCTAGACATA 59.111 37.037 0.00 0.00 40.18 2.29
207 208 6.721668 TCGGAGAAATGGATGTATCTAGACAT 59.278 38.462 0.00 0.00 42.82 3.06
208 209 6.016192 GTCGGAGAAATGGATGTATCTAGACA 60.016 42.308 0.00 0.00 39.69 3.41
209 210 6.016192 TGTCGGAGAAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 39.69 2.59
210 211 6.068670 TGTCGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 39.69 2.43
211 212 6.332735 TGTCGGAGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 39.69 2.43
212 213 6.323996 AGTTGTCGGAGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 39.69 1.98
213 214 5.129485 AGTTGTCGGAGAAATGGATGTATCT 59.871 40.000 0.00 0.00 39.69 1.98
214 215 5.360591 AGTTGTCGGAGAAATGGATGTATC 58.639 41.667 0.00 0.00 39.69 2.24
215 216 5.359194 AGTTGTCGGAGAAATGGATGTAT 57.641 39.130 0.00 0.00 39.69 2.29
216 217 4.819105 AGTTGTCGGAGAAATGGATGTA 57.181 40.909 0.00 0.00 39.69 2.29
217 218 3.703001 AGTTGTCGGAGAAATGGATGT 57.297 42.857 0.00 0.00 39.69 3.06
218 219 6.683974 AAATAGTTGTCGGAGAAATGGATG 57.316 37.500 0.00 0.00 39.69 3.51
219 220 6.037172 CGAAAATAGTTGTCGGAGAAATGGAT 59.963 38.462 0.00 0.00 39.69 3.41
220 221 5.350365 CGAAAATAGTTGTCGGAGAAATGGA 59.650 40.000 0.00 0.00 39.69 3.41
221 222 5.560148 CGAAAATAGTTGTCGGAGAAATGG 58.440 41.667 0.00 0.00 39.69 3.16
230 231 2.597305 CTCCGTCCGAAAATAGTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
231 232 2.928116 CCTCCGTCCGAAAATAGTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
232 233 2.354403 CCCTCCGTCCGAAAATAGTTGT 60.354 50.000 0.00 0.00 0.00 3.32
233 234 2.093869 TCCCTCCGTCCGAAAATAGTTG 60.094 50.000 0.00 0.00 0.00 3.16
234 235 2.167900 CTCCCTCCGTCCGAAAATAGTT 59.832 50.000 0.00 0.00 0.00 2.24
235 236 1.755380 CTCCCTCCGTCCGAAAATAGT 59.245 52.381 0.00 0.00 0.00 2.12
236 237 1.755380 ACTCCCTCCGTCCGAAAATAG 59.245 52.381 0.00 0.00 0.00 1.73
237 238 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
238 239 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
239 240 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
240 241 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
241 242 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
242 243 0.911769 TTAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
243 244 1.755179 TTTAGTACTCCCTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
261 262 8.664669 ATTAGGTGAGTTGGATGGTTATTTTT 57.335 30.769 0.00 0.00 0.00 1.94
262 263 9.408648 CTATTAGGTGAGTTGGATGGTTATTTT 57.591 33.333 0.00 0.00 0.00 1.82
263 264 7.502561 GCTATTAGGTGAGTTGGATGGTTATTT 59.497 37.037 0.00 0.00 0.00 1.40
264 265 6.998673 GCTATTAGGTGAGTTGGATGGTTATT 59.001 38.462 0.00 0.00 0.00 1.40
265 266 6.465894 GGCTATTAGGTGAGTTGGATGGTTAT 60.466 42.308 0.00 0.00 0.00 1.89
266 267 5.163237 GGCTATTAGGTGAGTTGGATGGTTA 60.163 44.000 0.00 0.00 0.00 2.85
267 268 4.385310 GGCTATTAGGTGAGTTGGATGGTT 60.385 45.833 0.00 0.00 0.00 3.67
268 269 3.136626 GGCTATTAGGTGAGTTGGATGGT 59.863 47.826 0.00 0.00 0.00 3.55
269 270 3.496870 GGGCTATTAGGTGAGTTGGATGG 60.497 52.174 0.00 0.00 0.00 3.51
270 271 3.136443 TGGGCTATTAGGTGAGTTGGATG 59.864 47.826 0.00 0.00 0.00 3.51
271 272 3.393687 TGGGCTATTAGGTGAGTTGGAT 58.606 45.455 0.00 0.00 0.00 3.41
272 273 2.840511 TGGGCTATTAGGTGAGTTGGA 58.159 47.619 0.00 0.00 0.00 3.53
273 274 3.864789 ATGGGCTATTAGGTGAGTTGG 57.135 47.619 0.00 0.00 0.00 3.77
274 275 4.526970 ACAATGGGCTATTAGGTGAGTTG 58.473 43.478 0.00 0.00 0.00 3.16
275 276 4.862641 ACAATGGGCTATTAGGTGAGTT 57.137 40.909 0.00 0.00 0.00 3.01
276 277 5.687706 GCTTACAATGGGCTATTAGGTGAGT 60.688 44.000 0.00 0.00 0.00 3.41
277 278 4.757149 GCTTACAATGGGCTATTAGGTGAG 59.243 45.833 0.00 0.00 0.00 3.51
278 279 4.445735 GGCTTACAATGGGCTATTAGGTGA 60.446 45.833 0.00 0.00 0.00 4.02
279 280 3.821033 GGCTTACAATGGGCTATTAGGTG 59.179 47.826 0.00 0.00 0.00 4.00
280 281 3.461831 TGGCTTACAATGGGCTATTAGGT 59.538 43.478 0.00 0.00 0.00 3.08
281 282 4.098914 TGGCTTACAATGGGCTATTAGG 57.901 45.455 0.00 0.00 0.00 2.69
282 283 5.316167 TGATGGCTTACAATGGGCTATTAG 58.684 41.667 0.00 0.00 0.00 1.73
283 284 5.317600 TGATGGCTTACAATGGGCTATTA 57.682 39.130 0.00 0.00 0.00 0.98
284 285 4.183223 TGATGGCTTACAATGGGCTATT 57.817 40.909 0.00 0.00 0.00 1.73
285 286 3.882102 TGATGGCTTACAATGGGCTAT 57.118 42.857 0.00 0.00 0.00 2.97
286 287 3.882102 ATGATGGCTTACAATGGGCTA 57.118 42.857 0.00 0.00 0.00 3.93
287 288 2.761786 ATGATGGCTTACAATGGGCT 57.238 45.000 0.00 0.00 0.00 5.19
288 289 5.473066 AAATATGATGGCTTACAATGGGC 57.527 39.130 0.00 0.00 0.00 5.36
289 290 8.805175 TGATTAAATATGATGGCTTACAATGGG 58.195 33.333 0.00 0.00 0.00 4.00
321 322 8.624776 GGCTCACTTAAGCATGACTAATTTAAT 58.375 33.333 1.29 0.00 44.35 1.40
322 323 7.609918 TGGCTCACTTAAGCATGACTAATTTAA 59.390 33.333 1.29 0.00 44.35 1.52
323 324 7.065803 GTGGCTCACTTAAGCATGACTAATTTA 59.934 37.037 1.29 0.00 44.35 1.40
324 325 5.945784 TGGCTCACTTAAGCATGACTAATTT 59.054 36.000 1.29 0.00 44.35 1.82
325 326 5.355350 GTGGCTCACTTAAGCATGACTAATT 59.645 40.000 1.29 0.00 44.35 1.40
326 327 4.878397 GTGGCTCACTTAAGCATGACTAAT 59.122 41.667 1.29 0.00 44.35 1.73
327 328 4.253685 GTGGCTCACTTAAGCATGACTAA 58.746 43.478 1.29 0.00 44.35 2.24
328 329 3.260632 TGTGGCTCACTTAAGCATGACTA 59.739 43.478 1.29 0.00 44.35 2.59
329 330 2.038952 TGTGGCTCACTTAAGCATGACT 59.961 45.455 1.29 0.00 44.35 3.41
330 331 2.160417 GTGTGGCTCACTTAAGCATGAC 59.840 50.000 12.19 0.00 44.35 3.06
331 332 2.426522 GTGTGGCTCACTTAAGCATGA 58.573 47.619 12.19 0.00 44.35 3.07
332 333 1.470098 GGTGTGGCTCACTTAAGCATG 59.530 52.381 18.07 0.00 44.35 4.06
333 334 1.352352 AGGTGTGGCTCACTTAAGCAT 59.648 47.619 18.07 0.00 44.35 3.79
334 335 0.764890 AGGTGTGGCTCACTTAAGCA 59.235 50.000 18.07 0.00 44.35 3.91
335 336 1.002544 AGAGGTGTGGCTCACTTAAGC 59.997 52.381 18.07 2.68 45.50 3.09
336 337 4.744795 ATAGAGGTGTGGCTCACTTAAG 57.255 45.455 18.07 0.00 45.50 1.85
337 338 4.832248 CAATAGAGGTGTGGCTCACTTAA 58.168 43.478 18.07 4.56 45.50 1.85
338 339 3.369471 GCAATAGAGGTGTGGCTCACTTA 60.369 47.826 18.07 9.69 45.50 2.24
339 340 2.616510 GCAATAGAGGTGTGGCTCACTT 60.617 50.000 18.07 11.65 45.50 3.16
340 341 1.065854 GCAATAGAGGTGTGGCTCACT 60.066 52.381 18.07 5.65 45.50 3.41
341 342 1.373570 GCAATAGAGGTGTGGCTCAC 58.626 55.000 11.10 11.10 45.47 3.51
342 343 0.253044 GGCAATAGAGGTGTGGCTCA 59.747 55.000 0.00 0.00 35.12 4.26
343 344 0.253044 TGGCAATAGAGGTGTGGCTC 59.747 55.000 0.00 0.00 38.56 4.70
344 345 0.698238 TTGGCAATAGAGGTGTGGCT 59.302 50.000 0.00 0.00 38.56 4.75
345 346 1.544724 TTTGGCAATAGAGGTGTGGC 58.455 50.000 0.00 0.00 38.26 5.01
346 347 4.806640 AATTTTGGCAATAGAGGTGTGG 57.193 40.909 0.00 0.00 0.00 4.17
347 348 5.807011 GCTAAATTTTGGCAATAGAGGTGTG 59.193 40.000 12.07 0.00 37.09 3.82
348 349 5.716703 AGCTAAATTTTGGCAATAGAGGTGT 59.283 36.000 18.13 0.00 39.92 4.16
349 350 6.212888 AGCTAAATTTTGGCAATAGAGGTG 57.787 37.500 18.13 0.00 39.92 4.00
350 351 7.954666 TTAGCTAAATTTTGGCAATAGAGGT 57.045 32.000 18.13 4.16 39.92 3.85
351 352 8.632679 TGATTAGCTAAATTTTGGCAATAGAGG 58.367 33.333 18.13 0.00 39.92 3.69
381 382 8.463607 GGCTTACAACCAAAGCTAACATAATTA 58.536 33.333 7.65 0.00 46.81 1.40
382 383 7.039363 TGGCTTACAACCAAAGCTAACATAATT 60.039 33.333 7.65 0.00 46.81 1.40
383 384 6.435904 TGGCTTACAACCAAAGCTAACATAAT 59.564 34.615 7.65 0.00 46.81 1.28
384 385 5.770663 TGGCTTACAACCAAAGCTAACATAA 59.229 36.000 7.65 0.00 46.81 1.90
385 386 5.317808 TGGCTTACAACCAAAGCTAACATA 58.682 37.500 7.65 0.00 46.81 2.29
386 387 4.148838 TGGCTTACAACCAAAGCTAACAT 58.851 39.130 7.65 0.00 46.81 2.71
387 388 3.556999 TGGCTTACAACCAAAGCTAACA 58.443 40.909 7.65 0.00 46.81 2.41
388 389 4.217550 TGATGGCTTACAACCAAAGCTAAC 59.782 41.667 7.65 1.83 46.81 2.34
389 390 4.402829 TGATGGCTTACAACCAAAGCTAA 58.597 39.130 7.65 0.00 46.81 3.09
390 391 4.027674 TGATGGCTTACAACCAAAGCTA 57.972 40.909 7.65 2.29 46.81 3.32
391 392 2.875296 TGATGGCTTACAACCAAAGCT 58.125 42.857 7.65 0.00 46.81 3.74
392 393 3.874392 ATGATGGCTTACAACCAAAGC 57.126 42.857 0.00 0.00 46.90 3.51
395 396 9.194972 TGATTAAATATGATGGCTTACAACCAA 57.805 29.630 0.00 0.00 41.49 3.67
396 397 8.759481 TGATTAAATATGATGGCTTACAACCA 57.241 30.769 0.00 0.00 42.61 3.67
426 427 8.678199 GCTCACTTAAGCAGGACTAATTTAATT 58.322 33.333 1.29 0.00 42.05 1.40
427 428 7.283354 GGCTCACTTAAGCAGGACTAATTTAAT 59.717 37.037 1.29 0.00 44.35 1.40
428 429 6.598064 GGCTCACTTAAGCAGGACTAATTTAA 59.402 38.462 1.29 0.00 44.35 1.52
429 430 6.113411 GGCTCACTTAAGCAGGACTAATTTA 58.887 40.000 1.29 0.00 44.35 1.40
430 431 4.944317 GGCTCACTTAAGCAGGACTAATTT 59.056 41.667 1.29 0.00 44.35 1.82
431 432 4.019321 TGGCTCACTTAAGCAGGACTAATT 60.019 41.667 1.29 0.00 44.35 1.40
432 433 3.519510 TGGCTCACTTAAGCAGGACTAAT 59.480 43.478 1.29 0.00 44.35 1.73
433 434 2.903784 TGGCTCACTTAAGCAGGACTAA 59.096 45.455 1.29 0.00 44.35 2.24
434 435 2.233922 GTGGCTCACTTAAGCAGGACTA 59.766 50.000 1.29 0.00 44.35 2.59
435 436 1.002544 GTGGCTCACTTAAGCAGGACT 59.997 52.381 1.29 0.00 44.35 3.85
436 437 1.270839 TGTGGCTCACTTAAGCAGGAC 60.271 52.381 1.29 0.00 44.35 3.85
437 438 1.055849 TGTGGCTCACTTAAGCAGGA 58.944 50.000 1.29 0.00 44.35 3.86
438 439 1.160137 GTGTGGCTCACTTAAGCAGG 58.840 55.000 12.19 0.00 44.35 4.85
439 440 1.160137 GGTGTGGCTCACTTAAGCAG 58.840 55.000 18.07 0.00 44.35 4.24
440 441 0.764890 AGGTGTGGCTCACTTAAGCA 59.235 50.000 18.07 0.00 44.35 3.91
441 442 1.002544 AGAGGTGTGGCTCACTTAAGC 59.997 52.381 18.07 2.68 45.50 3.09
442 443 4.744795 ATAGAGGTGTGGCTCACTTAAG 57.255 45.455 18.07 0.00 45.50 1.85
443 444 4.832248 CAATAGAGGTGTGGCTCACTTAA 58.168 43.478 18.07 4.56 45.50 1.85
444 445 3.369471 GCAATAGAGGTGTGGCTCACTTA 60.369 47.826 18.07 9.69 45.50 2.24
445 446 2.616510 GCAATAGAGGTGTGGCTCACTT 60.617 50.000 18.07 11.65 45.50 3.16
446 447 1.065854 GCAATAGAGGTGTGGCTCACT 60.066 52.381 18.07 5.65 45.50 3.41
447 448 1.373570 GCAATAGAGGTGTGGCTCAC 58.626 55.000 11.10 11.10 45.47 3.51
448 449 0.253044 GGCAATAGAGGTGTGGCTCA 59.747 55.000 0.00 0.00 35.12 4.26
449 450 0.253044 TGGCAATAGAGGTGTGGCTC 59.747 55.000 0.00 0.00 38.56 4.70
450 451 0.698238 TTGGCAATAGAGGTGTGGCT 59.302 50.000 0.00 0.00 38.56 4.75
451 452 1.544724 TTTGGCAATAGAGGTGTGGC 58.455 50.000 0.00 0.00 38.26 5.01
452 453 3.157087 AGTTTTGGCAATAGAGGTGTGG 58.843 45.455 0.00 0.00 0.00 4.17
453 454 4.853924 AAGTTTTGGCAATAGAGGTGTG 57.146 40.909 0.00 0.00 0.00 3.82
454 455 4.459337 GCTAAGTTTTGGCAATAGAGGTGT 59.541 41.667 0.00 0.00 37.09 4.16
455 456 4.702131 AGCTAAGTTTTGGCAATAGAGGTG 59.298 41.667 0.00 0.00 39.92 4.00
456 457 4.923415 AGCTAAGTTTTGGCAATAGAGGT 58.077 39.130 0.00 0.00 39.92 3.85
457 458 7.283127 TGATTAGCTAAGTTTTGGCAATAGAGG 59.717 37.037 12.54 0.00 39.92 3.69
458 459 8.213518 TGATTAGCTAAGTTTTGGCAATAGAG 57.786 34.615 12.54 0.00 39.92 2.43
459 460 8.574251 TTGATTAGCTAAGTTTTGGCAATAGA 57.426 30.769 12.54 0.00 39.92 1.98
460 461 9.638239 TTTTGATTAGCTAAGTTTTGGCAATAG 57.362 29.630 12.54 0.61 39.92 1.73
463 464 9.988815 TTATTTTGATTAGCTAAGTTTTGGCAA 57.011 25.926 12.54 0.00 39.92 4.52
483 484 9.665719 CCCAACCAAAGCTAACATAATTATTTT 57.334 29.630 0.00 0.00 0.00 1.82
484 485 9.041354 TCCCAACCAAAGCTAACATAATTATTT 57.959 29.630 0.00 0.00 0.00 1.40
485 486 8.602472 TCCCAACCAAAGCTAACATAATTATT 57.398 30.769 0.00 0.00 0.00 1.40
486 487 8.782137 ATCCCAACCAAAGCTAACATAATTAT 57.218 30.769 0.00 0.00 0.00 1.28
487 488 9.127277 GTATCCCAACCAAAGCTAACATAATTA 57.873 33.333 0.00 0.00 0.00 1.40
488 489 7.839200 AGTATCCCAACCAAAGCTAACATAATT 59.161 33.333 0.00 0.00 0.00 1.40
489 490 7.354312 AGTATCCCAACCAAAGCTAACATAAT 58.646 34.615 0.00 0.00 0.00 1.28
490 491 6.727394 AGTATCCCAACCAAAGCTAACATAA 58.273 36.000 0.00 0.00 0.00 1.90
491 492 6.321821 AGTATCCCAACCAAAGCTAACATA 57.678 37.500 0.00 0.00 0.00 2.29
492 493 5.193099 AGTATCCCAACCAAAGCTAACAT 57.807 39.130 0.00 0.00 0.00 2.71
493 494 4.650972 AGTATCCCAACCAAAGCTAACA 57.349 40.909 0.00 0.00 0.00 2.41
494 495 6.657966 ACTTTAGTATCCCAACCAAAGCTAAC 59.342 38.462 0.00 0.00 33.16 2.34
495 496 6.786122 ACTTTAGTATCCCAACCAAAGCTAA 58.214 36.000 0.00 0.00 33.16 3.09
496 497 6.382919 ACTTTAGTATCCCAACCAAAGCTA 57.617 37.500 0.00 0.00 33.16 3.32
497 498 5.256806 ACTTTAGTATCCCAACCAAAGCT 57.743 39.130 0.00 0.00 33.16 3.74
498 499 5.105877 GGAACTTTAGTATCCCAACCAAAGC 60.106 44.000 0.00 0.00 33.16 3.51
499 500 6.007703 TGGAACTTTAGTATCCCAACCAAAG 58.992 40.000 0.00 0.00 35.18 2.77
500 501 5.954757 TGGAACTTTAGTATCCCAACCAAA 58.045 37.500 0.00 0.00 32.01 3.28
501 502 5.586155 TGGAACTTTAGTATCCCAACCAA 57.414 39.130 0.00 0.00 32.01 3.67
502 503 5.339695 GGATGGAACTTTAGTATCCCAACCA 60.340 44.000 14.51 0.00 36.84 3.67
503 504 5.104067 AGGATGGAACTTTAGTATCCCAACC 60.104 44.000 12.84 12.84 38.42 3.77
504 505 6.002653 AGGATGGAACTTTAGTATCCCAAC 57.997 41.667 6.57 3.44 38.42 3.77
505 506 6.631766 CGAAGGATGGAACTTTAGTATCCCAA 60.632 42.308 6.57 0.00 38.42 4.12
506 507 5.163343 CGAAGGATGGAACTTTAGTATCCCA 60.163 44.000 6.57 4.53 38.42 4.37
507 508 5.163332 ACGAAGGATGGAACTTTAGTATCCC 60.163 44.000 6.57 0.00 38.42 3.85
508 509 5.915175 ACGAAGGATGGAACTTTAGTATCC 58.085 41.667 0.00 0.00 38.03 2.59
509 510 7.266400 AGAACGAAGGATGGAACTTTAGTATC 58.734 38.462 0.00 0.00 0.00 2.24
510 511 7.184067 AGAACGAAGGATGGAACTTTAGTAT 57.816 36.000 0.00 0.00 0.00 2.12
511 512 6.600882 AGAACGAAGGATGGAACTTTAGTA 57.399 37.500 0.00 0.00 0.00 1.82
512 513 5.485209 AGAACGAAGGATGGAACTTTAGT 57.515 39.130 0.00 0.00 0.00 2.24
513 514 7.900782 TTTAGAACGAAGGATGGAACTTTAG 57.099 36.000 0.00 0.00 0.00 1.85
514 515 8.857694 AATTTAGAACGAAGGATGGAACTTTA 57.142 30.769 0.00 0.00 0.00 1.85
515 516 7.761038 AATTTAGAACGAAGGATGGAACTTT 57.239 32.000 0.00 0.00 0.00 2.66
516 517 8.857694 TTAATTTAGAACGAAGGATGGAACTT 57.142 30.769 0.00 0.00 0.00 2.66
517 518 9.462606 AATTAATTTAGAACGAAGGATGGAACT 57.537 29.630 0.00 0.00 0.00 3.01
518 519 9.717892 GAATTAATTTAGAACGAAGGATGGAAC 57.282 33.333 1.43 0.00 0.00 3.62
519 520 8.609176 CGAATTAATTTAGAACGAAGGATGGAA 58.391 33.333 1.43 0.00 0.00 3.53
520 521 7.225931 CCGAATTAATTTAGAACGAAGGATGGA 59.774 37.037 1.43 0.00 0.00 3.41
521 522 7.225931 TCCGAATTAATTTAGAACGAAGGATGG 59.774 37.037 1.43 0.00 0.00 3.51
522 523 8.138365 TCCGAATTAATTTAGAACGAAGGATG 57.862 34.615 1.43 0.00 0.00 3.51
523 524 8.904099 ATCCGAATTAATTTAGAACGAAGGAT 57.096 30.769 1.43 4.00 0.00 3.24
524 525 9.252962 GTATCCGAATTAATTTAGAACGAAGGA 57.747 33.333 1.43 2.07 0.00 3.36
525 526 9.257651 AGTATCCGAATTAATTTAGAACGAAGG 57.742 33.333 1.43 0.00 0.00 3.46
540 541 9.110502 GAAGAATGGAACTTTAGTATCCGAATT 57.889 33.333 0.00 0.00 35.96 2.17
541 542 7.438459 CGAAGAATGGAACTTTAGTATCCGAAT 59.562 37.037 0.00 0.00 35.96 3.34
542 543 6.755141 CGAAGAATGGAACTTTAGTATCCGAA 59.245 38.462 0.00 0.00 35.96 4.30
543 544 6.127535 ACGAAGAATGGAACTTTAGTATCCGA 60.128 38.462 0.00 0.00 35.96 4.55
544 545 6.040878 ACGAAGAATGGAACTTTAGTATCCG 58.959 40.000 0.00 0.00 35.96 4.18
545 546 7.845066 AACGAAGAATGGAACTTTAGTATCC 57.155 36.000 0.00 0.00 0.00 2.59
561 562 9.902196 GGAGGTCAATTAATTTAAAACGAAGAA 57.098 29.630 0.00 0.00 0.00 2.52
562 563 9.069082 TGGAGGTCAATTAATTTAAAACGAAGA 57.931 29.630 0.00 0.00 0.00 2.87
563 564 9.855021 ATGGAGGTCAATTAATTTAAAACGAAG 57.145 29.630 0.00 0.00 0.00 3.79
575 576 9.444600 GTGTCTAGTTAAATGGAGGTCAATTAA 57.555 33.333 0.00 0.00 30.66 1.40
576 577 7.762615 CGTGTCTAGTTAAATGGAGGTCAATTA 59.237 37.037 0.00 0.00 0.00 1.40
577 578 6.594159 CGTGTCTAGTTAAATGGAGGTCAATT 59.406 38.462 0.00 0.00 0.00 2.32
578 579 6.070995 TCGTGTCTAGTTAAATGGAGGTCAAT 60.071 38.462 0.00 0.00 0.00 2.57
579 580 5.244402 TCGTGTCTAGTTAAATGGAGGTCAA 59.756 40.000 0.00 0.00 0.00 3.18
580 581 4.768448 TCGTGTCTAGTTAAATGGAGGTCA 59.232 41.667 0.00 0.00 0.00 4.02
581 582 5.320549 TCGTGTCTAGTTAAATGGAGGTC 57.679 43.478 0.00 0.00 0.00 3.85
582 583 5.733620 TTCGTGTCTAGTTAAATGGAGGT 57.266 39.130 0.00 0.00 0.00 3.85
596 597 8.647796 TGGAGGTCAATTAATATATTCGTGTCT 58.352 33.333 0.00 2.49 0.00 3.41
597 598 8.827177 TGGAGGTCAATTAATATATTCGTGTC 57.173 34.615 0.00 0.00 0.00 3.67
598 599 9.793259 AATGGAGGTCAATTAATATATTCGTGT 57.207 29.630 0.00 0.00 0.00 4.49
609 610 9.444600 GTGTCTAGTTAAATGGAGGTCAATTAA 57.555 33.333 0.00 0.00 30.66 1.40
610 611 7.762615 CGTGTCTAGTTAAATGGAGGTCAATTA 59.237 37.037 0.00 0.00 0.00 1.40
611 612 6.594159 CGTGTCTAGTTAAATGGAGGTCAATT 59.406 38.462 0.00 0.00 0.00 2.32
612 613 6.070995 TCGTGTCTAGTTAAATGGAGGTCAAT 60.071 38.462 0.00 0.00 0.00 2.57
613 614 5.244402 TCGTGTCTAGTTAAATGGAGGTCAA 59.756 40.000 0.00 0.00 0.00 3.18
614 615 4.768448 TCGTGTCTAGTTAAATGGAGGTCA 59.232 41.667 0.00 0.00 0.00 4.02
615 616 5.320549 TCGTGTCTAGTTAAATGGAGGTC 57.679 43.478 0.00 0.00 0.00 3.85
616 617 5.733620 TTCGTGTCTAGTTAAATGGAGGT 57.266 39.130 0.00 0.00 0.00 3.85
669 670 9.118300 CTTCCATTTGATTGACTAGCTAAGAAT 57.882 33.333 0.00 0.00 0.00 2.40
670 671 8.103305 ACTTCCATTTGATTGACTAGCTAAGAA 58.897 33.333 0.00 0.00 0.00 2.52
671 672 7.624549 ACTTCCATTTGATTGACTAGCTAAGA 58.375 34.615 0.00 0.00 0.00 2.10
672 673 7.856145 ACTTCCATTTGATTGACTAGCTAAG 57.144 36.000 0.00 0.00 0.00 2.18
673 674 9.733556 TTTACTTCCATTTGATTGACTAGCTAA 57.266 29.630 0.00 0.00 0.00 3.09
674 675 9.383519 CTTTACTTCCATTTGATTGACTAGCTA 57.616 33.333 0.00 0.00 0.00 3.32
675 676 7.148171 GCTTTACTTCCATTTGATTGACTAGCT 60.148 37.037 0.00 0.00 0.00 3.32
676 677 6.969473 GCTTTACTTCCATTTGATTGACTAGC 59.031 38.462 0.00 0.00 0.00 3.42
677 678 8.044060 TGCTTTACTTCCATTTGATTGACTAG 57.956 34.615 0.00 0.00 0.00 2.57
678 679 7.994425 TGCTTTACTTCCATTTGATTGACTA 57.006 32.000 0.00 0.00 0.00 2.59
679 680 6.899393 TGCTTTACTTCCATTTGATTGACT 57.101 33.333 0.00 0.00 0.00 3.41
680 681 8.538409 AATTGCTTTACTTCCATTTGATTGAC 57.462 30.769 0.00 0.00 0.00 3.18
681 682 8.991026 CAAATTGCTTTACTTCCATTTGATTGA 58.009 29.630 0.00 0.00 31.59 2.57
682 683 8.991026 TCAAATTGCTTTACTTCCATTTGATTG 58.009 29.630 0.00 0.00 33.53 2.67
683 684 9.558396 TTCAAATTGCTTTACTTCCATTTGATT 57.442 25.926 6.08 0.00 36.88 2.57
684 685 9.558396 TTTCAAATTGCTTTACTTCCATTTGAT 57.442 25.926 6.08 0.00 36.88 2.57
685 686 8.825745 GTTTCAAATTGCTTTACTTCCATTTGA 58.174 29.630 0.00 0.00 35.71 2.69
686 687 7.793427 CGTTTCAAATTGCTTTACTTCCATTTG 59.207 33.333 0.00 0.00 0.00 2.32
697 698 8.711457 CATATTTCCTTCGTTTCAAATTGCTTT 58.289 29.630 0.00 0.00 0.00 3.51
708 709 7.027161 CGTTTCCATTCATATTTCCTTCGTTT 58.973 34.615 0.00 0.00 0.00 3.60
719 720 2.443255 AGGGCTCCGTTTCCATTCATAT 59.557 45.455 0.00 0.00 0.00 1.78
842 850 1.774110 TCTTTGCTTCTGCCCAAACA 58.226 45.000 0.00 0.00 38.71 2.83
969 977 2.789213 GCTTCCTCTCCTCTGCTTTTT 58.211 47.619 0.00 0.00 0.00 1.94
1261 1270 0.753262 CAGATCCACGAACCCTAGGG 59.247 60.000 27.36 27.36 42.03 3.53
1320 1329 6.714810 TCAACCAAACATAGACATGTAAAGCT 59.285 34.615 0.00 0.00 44.83 3.74
1322 1331 8.950210 AGATCAACCAAACATAGACATGTAAAG 58.050 33.333 0.00 0.00 44.83 1.85
1335 1344 2.655090 TCCAGCAGATCAACCAAACA 57.345 45.000 0.00 0.00 0.00 2.83
1336 1345 3.507233 TCAATCCAGCAGATCAACCAAAC 59.493 43.478 0.00 0.00 32.47 2.93
1337 1346 3.765381 TCAATCCAGCAGATCAACCAAA 58.235 40.909 0.00 0.00 32.47 3.28
1338 1347 3.438216 TCAATCCAGCAGATCAACCAA 57.562 42.857 0.00 0.00 32.47 3.67
1339 1348 3.438216 TTCAATCCAGCAGATCAACCA 57.562 42.857 0.00 0.00 32.47 3.67
1372 1381 1.039068 CCCAACCAAACATGACTGCA 58.961 50.000 0.00 0.00 0.00 4.41
1375 1384 1.331214 CAGCCCAACCAAACATGACT 58.669 50.000 0.00 0.00 0.00 3.41
1376 1385 0.319813 GCAGCCCAACCAAACATGAC 60.320 55.000 0.00 0.00 0.00 3.06
1378 1387 1.373246 CGCAGCCCAACCAAACATG 60.373 57.895 0.00 0.00 0.00 3.21
1456 1465 0.179161 ACGACGCACACTAGATCTGC 60.179 55.000 5.18 0.00 0.00 4.26
1482 1494 2.416547 CAGCACATTTCTACGAACAGGG 59.583 50.000 0.00 0.00 0.00 4.45
1489 1501 3.369147 CCTCTTCACAGCACATTTCTACG 59.631 47.826 0.00 0.00 0.00 3.51
1569 1582 7.161404 AGCAGATGACACAACAATCTTAAGTA 58.839 34.615 1.63 0.00 0.00 2.24
1570 1583 6.000219 AGCAGATGACACAACAATCTTAAGT 59.000 36.000 1.63 0.00 0.00 2.24
1571 1584 6.492007 AGCAGATGACACAACAATCTTAAG 57.508 37.500 0.00 0.00 0.00 1.85
1572 1585 7.119699 CCTTAGCAGATGACACAACAATCTTAA 59.880 37.037 0.00 0.00 0.00 1.85
1573 1586 6.595326 CCTTAGCAGATGACACAACAATCTTA 59.405 38.462 0.00 0.00 0.00 2.10
1617 1630 9.699410 TGAGTTAAAATTCCCAATACATCTCAT 57.301 29.630 0.00 0.00 0.00 2.90
1707 1720 9.717942 ATCTCTATTTTCCAGCAGATATGTAAC 57.282 33.333 0.00 0.00 0.00 2.50
1716 1729 6.994496 TGGTATTCATCTCTATTTTCCAGCAG 59.006 38.462 0.00 0.00 0.00 4.24
1801 1815 4.926140 ACAGAGACGATAAGCATCATCA 57.074 40.909 0.00 0.00 0.00 3.07
1805 1819 6.018751 TGCATAAAACAGAGACGATAAGCATC 60.019 38.462 0.00 0.00 0.00 3.91
1806 1820 5.817296 TGCATAAAACAGAGACGATAAGCAT 59.183 36.000 0.00 0.00 0.00 3.79
1861 1889 6.038936 CGAGTTTCTCCTGGTTTTAAAGGAAA 59.961 38.462 0.00 0.00 42.03 3.13
1885 1913 0.034896 AAACAGAGCCACCACTACCG 59.965 55.000 0.00 0.00 0.00 4.02
1890 1918 1.967319 TCTTCAAACAGAGCCACCAC 58.033 50.000 0.00 0.00 0.00 4.16
2129 2159 5.065988 GGTGCTAATTATTACCACACCAGTG 59.934 44.000 16.09 0.00 44.32 3.66
2233 2263 4.855715 TGCTACCAGCTCTGTATCATAC 57.144 45.455 0.00 0.00 42.97 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.