>input_sequence_85480
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------------------------------------------------ATGTCGGCGATGACGGCGGCGGTGCCCTTCTG
GCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCGGCGCTGGTGCGGAGCTGCCTCAAGGAGCCCTTCA
AGACCGAGGTCTCCTCCCGCGAGAAGGTCCACTTCTCCCTCTCCAAGTGGGCCGACGAGAAGCAGCAGAAGCCCAGTAAG
TTCCTCGATCCGATCAAGCCCCTGTCCCGCGTCCTCGATCCGGTTTGATTTGCCTGGCTACGGAATGAACCCTAG-----
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>chr3D_1_TraesCS3D01G291500
TAATTAAATTGAAGCATGATACCCTTTTATGAAATATACGATAGAATCATGTAAAGTATTATTTTCTCTCAAAAGCTTTG
TTAATTCTGAATGCAGACACAGAGCAGAAAGTGCTCGCCTTTCAGCCTCATCCAAAAATCTTACTCCCTCCGTCCGGAAT
TACTTGTCGCATAAATGGATAAAAATATATGTATCTATAACTAAAATATGTCTAGATACATCCATTTCTCCGACAACTAT
TTTCGGACGGAGGGAGTACTAAAAAATAACCATCCAACTCACCTAATAGCCCATTGTAAGCCATCATATTTAATCAAAAT
AATTAAATTAGTCATGCTTAAGTGAGCCACACCTCTATTGCCAAAATTTAGCTAATCAAAATAATTATGTTAGCTTTGGT
TGTAAGCCATCATATTTAATCAAAATAATTAAATTAGTCCTGCTTAAGTGAGCCACACCTCTATTGCCAAAACTTAGCTA
ATCAAAATAATTATGTTAGCTTTGGTTGGGATACTAAAGTTCCATCCTTCGTTCTAAATTAATTCGGATACTAAAGTTCC
ATTCTTCGTTTTAAATTAATTGACCTCCATTTAACTAGACACGAATATATTAATTGACCTCCATTTAACTAGACACGAAT
ATATCTAGACATTAAATAAGTATAGATATATTCTTAGCTAGTCAATCAAATGGAAGTAAAGCAATTTGAAACGAAGGAAA
TATGAATGGAAACGGAGCCCTGCCCCTCGC-------TTTATACCCGTCCGACCCTGCCCCGCCGAGCTCCGCGAGCGAT
GTGGGACTAATCGAACCGGGAGGTTTCGCGTCTGCGCCTCGTTCCCGACTGTTTGGGCAGAAGCAAAGAAGCCCAGCGAG
AAGATAAAAGGCCTCAAGGCCCATTTCCCCATCTCTATCATCGGCGGCGGCGGCTCGAGCAGAGGAAAGGAAGCTTTCTA
CCCTAGCAGAGAAAAAAAAAA-GCAGAGGAGAGGAAGCGGAGGCGACGATGTCGGCGATGACGGCGGCGGTGCCCTTCTG
GCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCGGCGCTGGTGCGGAGCTGCCTCAAGGAGCCCTTCA
AGACCGAGGTCTCCTCCCGCGAGAAGGTCCACTTCTCCCTCTCCAAGTGGGCCGACGAGAAGCAGCAGAAGCCCAGTAAG
TTCCTCGATCCGATCAAGCCCCTGTCCCGCGTCCTCGATCCGGTTTGATTTGCCTGGCTACGGAATGAACCCTAGGGTTC
GTGGATCTGGCTTGGTACTGTTGGATGTGGATCTTGGTCTAGGTCTAGAGCTTTACATGTCTATGTTTGGTTGATCTGCT
GGATTGAATACGATCTGATCTGCAGTCATGTTTGGTTGGGCTGCGCGTCGTCGCGTGATTCTGTTGCACACCTGCGTAGA
AATGTGTGCGTCGTTGACGATGGCGCAGATCTAGTGTGCGTCG---TTTTTTTCCCTGTTCGTAGAAATGTGCTGTGAAG
AGGGGGGG-AAACTGACCTACGCAAAAGGATGATCTTAAAGTTAGCTGTCAGTGTATAATATACTTAAGATTGTTGTGTC
ATCTGCTAAGGACTCTGGTATCAGCTCACATGAGATGTATTGGGAATTTTAACTCAGTCCGATAGCCTGGAGCTGCTAGA
ATCCTAAGATTATGTTTTACAGTTTAATACTAACTTAGTGTTACATATCTGCTGGAAAATAGAGATGAAT-ACCATGAAT
GCATGAAGTAATACATAACGAGGATCCTACCCTGAGTGTGACCTTGCATAGGCTTGATGA--------------TGCTTA
TCGTCTCTGTTTTATGCATAATTTTACCAGATAAAAAAATATATCTGTTTTCCTTTAAAACCAGGAGAAACTCGGTAGTG
GTGGCTCTGTTTGAAGATTAACTGTAGGAACCCCACCTGAACTTCTATGCAGTCATGGTTATTGATTAATCTCTGCAAGC
TTTTTGCAATATATTTCTTTCCCCTGATGCAAGGAAAATATCATGAGCTTAATCCGTGGCACCACGT--CTGCTGCGTGC
ACAAGAGCATTCACGAACTCATGCTAACGATAAAGAAACCTCATGAGGCAAAGGCATGTGCAAGTCTACTAATAGAGGCA
CTGGTGTGGTAATAATTAGCACCCGTAGTTTTCACTTTTCAGCGTCAATGCATCAGTACCTCATAGTTCTGCAAATGCCT
CAAGATTTTTCATACCCTATTTGTATGATACAGAGCTGGTAGCAAA-GCAGAGGGAG
>chr3A_679
TAGTCAA-------------------------------------------------------------------------
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-----------------------------------------------AAATGAAAGTCAAGAAACTTGGAACGAAGGAAG
CATGAATTGGAATGGAGCCCTGCCCCTCGCTTTATAGTTTATACCCGTCCGACCCTGCCCCGCCGAGCTCCGCGAGCGAT
GTGGGACTAATCGAACTGGGAGGTTTCGCGTCTGCGCCTCGTTCCCGACCGTTTGGGCAGAAGCAAAGAAGCCCAGCGAG
AAGATAAAAGGCCTCAAGGCCCATTTCCCCATCTCTATCATCGGCGGCGGCGGCTCGAGCAGAGGAAAGGAAGCTTTCTA
CCCTAGCAGAGAAAA--AAAA-GCAGAGGAGAGGAAGCGGAGGCGACGATGTCGGCGATGACGGCGGCGGTGCCCTTCTG
GCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCGGCGCTGGTGCGGAGCTGCCTCAAGGAGCCCTTCA
AGACCGAGGTCTCCTCCCGCGAGAAGGTCCACTTCTCCCTCTCCAAGTGGGCCGACGAGAAGCAGCAGAAGCCCAGTAAG
TTCCTCGATCCGATCAAGTCCCTGTCCCGCGTCCTCGATCCGGTTTGATTTGCCTGGCTACGGAATGAATCCTAGGGTTC
GTGGATCTGGCTTGGTACTGTTGGATGTAGATCTTGGTCTAGGTCTAGCGGTTTACATGTCTA-----GGTTGATCTGCT
GGATTGAATACGATCTGATCAGCGCTGATGTTTGGTTGGGCCGCGCGTCTTCGCGTGATTCTGTTGCACACCTGCGTAGA
AATCTGTGCGTCGTTGACGATGGCACAGATCTAGTGTGCGTCC---TTTTTTTGCCTGTTGGTAGAAATGTGTTGTGAGG
AGGGGAA-AAAACTGACCTACGCAAAAGGATGATCTTAAAGTTAGCTGTCAGTGTAATATAC----AAGATTGTTGTGTC
ATCTGCTAAGGACTCTGGTATCAGCTCACTTGAGATGTATTGGGAATTTTAACTCATCCT-ATAGCCTGGAGCTGCTAGA
ATCGTAAGATTATGTTTTACAGTTTAGT----ACTTAGTATTACTTATTTGCTGGAAAATAGAGATGATTAACCATGAAT
GCATGAAGTAATACATAACGAGGATCCTACCCTGAGTGTGACCTTGCATAGGCTGGATTGGGCGGACATGATGGTCCTTA
TCGTCTCTGTTCTATGCAAAATTTTACCAGATAAAA-AATATATCTATATTCCTTTAAAACCAGGAGAAACT--------
GTGGCTCTGTTTGAAGATTAACTGTAGGAGCCCCACCTGAACTTCTATGCAGTCATGGTTATCGATTAATCTCTGCAAGC
TTTTCGCAATAGATTTCTTTCCCCTGATGCAAGGAAAATATCATGAGCTTAATCTGTGGCACCACGTGGCTGCTGCGTGC
ACTAGAGCATTCGTGAACTCATGCTGACGATAAAGAAACCTCATGTGGCAAAGGCATGTGCAAGTCTACTAATAGAGGGG
CTGGTGTGGTAATAATTAGCACCCGTAGTTTTCACTTTTCAGAGTCAATGCATCAGTACCTCATAGTTCTGCAAATGGCT
CAAGATTTGTCATTACTCTATTTGTTGATACAGAGCTGGTAGCAAA-GCAGAGGGAG
>chr3B_688
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-----------------------------------------------AAATGGGAATCAATCAATTTGGAATTAAGGGAG
TACGAATCAGAACGGGGCCCTGCCCCTCCA-------TTTATACCCGTCTGACCCTAGCCCGCCGAGCTCCGCAAGCTAT
GTGGGACTAATCGAACCGGTAGGTTTCGCGTCTGCGCCTCGTTCCCGACCGTTTGGGCAGAAGTAAAGAAGCCCAGCGAG
AAGATAAAAAGCCTCAAGGCCCATTTCCCCATCTCTATCATCGGCGGCGGCGGCTCGAGCAGAGGAAAGGAAGCTTTCTA
CCCTAGCAGAGAAAA--AAAAAGCAGAGGAGAGGAAGCGGAGGCGACGATGTCGGCGATGACTGCGGCGGTGCCCTTCTG
GCGCGCGGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCGGCGTTGGTGCGGAGCTGCCTCAAGGAGCCCTTCA
AGACCGAGGTCTCCTCCCGCGAGAAGGTCCACTTCTCCCTCTCCAAGTGGACCGACGAGAAGCAGCAGAAGCCCAGTAAG
TTCCTCGATTCGATCAAGTCCCTGTCTCGCGTCCTCGATCCGGTTTGATTTGCCTGGTCACGGAATGAATCCTAGGGTTC
GTGGATCTGGCTTAGTACTGTTGGATGTGGATCTTGGTCTAGGTCCAGCGGTTTACTTGTCTA-----GGTTGATCTGCT
GGATTGAATACGATCTGATCAGTGATGATTTTTGGTTGGGCTGCGCGCCGTCGCGTGAATCTGTTCCACACCTGCGTAGA
AATGTGTGCGTCGTTGACGATGGCACAGATCTAGTGTGCGTCGTTTTTTCTTTTCCTGTTGGTAGAAATGTGCTGTGAAG
AGGGGGGGAAAACTGACATACGCAAAAGGATGATCTTAAAGTAAGCTGTCAGTGTAATATAC----AAGATTTTTGTGTC
ATCTGCGGCGGCGGCTGGTATCAGCTCACTTGAGATGTATTGGGAATTTTAATTCGCCCT-ATAGCCTGGAGCTGCTAGA
ATCGTAAGATTATGTTTTACAGTTTAGTACTAACTTAGTATTACTTATTTGCTGGAAAATAGAGATGAGTAACCATGAAT
GCATGAAGTAATACATAACGAGGATCCTACCCTGAGTGTGACCTTCCATAGGCTGGATTGGGTGGACATGATGGTGCTTA
TCGTCTCTGTTTTATGCATAATTTTACCAGATAAAA-AATATGCCTGTGTTCCTTTAAAACCAGGAGAAACTTGGTATTG
GTGGCTCTGTTTGAAGATTAACTGTAGGAACCCCACCTGAACTTCTATGCAGTCATAGTTATTGATTAATCTCTGCAAGC
TTTTTGCAATATACTTCTTTCCCCTGATGCAAGGAAAATATCATGAGCTTAATCTGTGGCACCACGT--CTGCTGCGTGC
ACAAGAGCATTCACGAACTCATGCTAACGATAAAGAAACCTCATGAATCAAAGGCATGTGCAAGTCTACTAATAGAGGGA
ATGGTGTGGTAATAATTAGCACCTGTAGTTTTCACTTTTCAGCGCCAATGCATCAGTACCTCATAGTTCTGCAAATGCCT
CAAGATTTGTCATACCCTATTTATATGATACAGAGCTGGTAGCAAAAGCAGAGGGAG
>SNPs
--S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------S----------S
-------S-S----------------------------------------------------------------------
-------------------------------------------------S------------------------------
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---------------SS---------------------------------------------------------------
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------------------S--------------------------------------------------S----------
------------------------------------------------S-S------------SSSSS------------
--------------------S--SS-S-----------------------------------------------------
------------------------S----------------------------S------S-------------------
--------------------------------------------------------SS---SSSSS--------------
-----------------------------S--------------------------SS-SS-------------------
---S----------------------S------------S----S---S-------------------S-----------
------------------------------------------------------S---SS--------------------
------------------------------------S-----------S-----------------------S----S--
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------------------------------------------------------S-------------------------
------------------------------------------------------------------------------S-
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--------S-------------S----------------------------------
>forward_160
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------------------------------------------------------------TTACTCCCTCCGTCCGGAAT
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>reverse_1913
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------------------------------------------------------------------------CGGTAGTG
GTGGCTCTGTTT--------------------------------------------------------------------
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