Multiple sequence alignment - TraesCS3D01G286900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G286900 chr3D 100.000 2049 0 0 864 2912 395667464 395665416 0.000000e+00 3784.0
1 TraesCS3D01G286900 chr3D 100.000 620 0 0 1 620 395668327 395667708 0.000000e+00 1146.0
2 TraesCS3D01G286900 chr3D 83.212 274 40 6 2396 2667 428249774 428250043 2.240000e-61 246.0
3 TraesCS3D01G286900 chr3A 93.298 2059 91 18 864 2912 515829159 515827138 0.000000e+00 2994.0
4 TraesCS3D01G286900 chr3A 88.406 207 13 6 409 606 515829414 515829210 3.750000e-59 239.0
5 TraesCS3D01G286900 chr3A 96.774 62 1 1 349 409 468005058 468004997 5.130000e-18 102.0
6 TraesCS3D01G286900 chr3B 92.407 1475 59 28 865 2334 520611779 520610353 0.000000e+00 2054.0
7 TraesCS3D01G286900 chr3B 88.889 198 13 4 2724 2912 520609952 520609755 4.850000e-58 235.0
8 TraesCS3D01G286900 chr3B 95.082 122 6 0 485 606 520611954 520611833 2.960000e-45 193.0
9 TraesCS3D01G286900 chr3B 89.412 85 6 2 409 493 520613617 520613536 1.430000e-18 104.0
10 TraesCS3D01G286900 chr1A 87.417 906 93 13 1027 1914 537070095 537070997 0.000000e+00 1022.0
11 TraesCS3D01G286900 chr1A 92.795 347 25 0 2 348 8734679 8734333 1.200000e-138 503.0
12 TraesCS3D01G286900 chr1D 88.331 857 83 9 1073 1913 441034651 441033796 0.000000e+00 1013.0
13 TraesCS3D01G286900 chr1D 82.609 253 40 4 2417 2667 477288500 477288750 1.360000e-53 220.0
14 TraesCS3D01G286900 chr1B 87.014 901 97 12 1029 1913 598702921 598702025 0.000000e+00 998.0
15 TraesCS3D01G286900 chr5B 93.084 347 23 1 2 348 695760405 695760060 9.310000e-140 507.0
16 TraesCS3D01G286900 chr5B 81.746 252 43 3 2417 2666 661207151 661206901 1.060000e-49 207.0
17 TraesCS3D01G286900 chr5B 80.000 265 43 7 2409 2668 602259052 602259311 1.380000e-43 187.0
18 TraesCS3D01G286900 chr6A 90.368 353 33 1 2 354 36700260 36699909 2.040000e-126 462.0
19 TraesCS3D01G286900 chr7A 89.655 348 34 2 2 348 692515521 692515867 2.660000e-120 442.0
20 TraesCS3D01G286900 chr2B 90.429 303 20 3 51 348 577150099 577149801 9.780000e-105 390.0
21 TraesCS3D01G286900 chr2B 82.449 245 33 7 2413 2655 598969795 598970031 3.800000e-49 206.0
22 TraesCS3D01G286900 chr2B 98.361 61 1 0 349 409 379118980 379119040 1.100000e-19 108.0
23 TraesCS3D01G286900 chr6B 86.446 332 29 10 17 348 31969880 31969565 1.660000e-92 350.0
24 TraesCS3D01G286900 chr6B 85.496 262 34 4 2406 2664 624777673 624777413 1.330000e-68 270.0
25 TraesCS3D01G286900 chr6B 98.361 61 0 1 350 409 545223426 545223366 3.970000e-19 106.0
26 TraesCS3D01G286900 chr5D 84.127 252 37 3 2417 2666 526122224 526121974 1.040000e-59 241.0
27 TraesCS3D01G286900 chr5D 98.361 61 1 0 349 409 437068501 437068441 1.100000e-19 108.0
28 TraesCS3D01G286900 chr7D 82.520 246 33 9 2417 2656 580008906 580008665 1.060000e-49 207.0
29 TraesCS3D01G286900 chr7D 96.721 61 2 0 349 409 70150928 70150988 5.130000e-18 102.0
30 TraesCS3D01G286900 chr4D 98.305 59 1 0 351 409 28848654 28848596 1.430000e-18 104.0
31 TraesCS3D01G286900 chr4D 96.667 60 1 1 351 409 401416651 401416710 6.640000e-17 99.0
32 TraesCS3D01G286900 chr5A 96.721 61 2 0 349 409 552378371 552378311 5.130000e-18 102.0
33 TraesCS3D01G286900 chr7B 95.082 61 3 0 349 409 491198874 491198934 2.390000e-16 97.1
34 TraesCS3D01G286900 chr4A 100.000 30 0 0 2345 2374 217366881 217366852 4.050000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G286900 chr3D 395665416 395668327 2911 True 2465.0 3784 100.0000 1 2912 2 chr3D.!!$R1 2911
1 TraesCS3D01G286900 chr3A 515827138 515829414 2276 True 1616.5 2994 90.8520 409 2912 2 chr3A.!!$R2 2503
2 TraesCS3D01G286900 chr3B 520609755 520613617 3862 True 646.5 2054 91.4475 409 2912 4 chr3B.!!$R1 2503
3 TraesCS3D01G286900 chr1A 537070095 537070997 902 False 1022.0 1022 87.4170 1027 1914 1 chr1A.!!$F1 887
4 TraesCS3D01G286900 chr1D 441033796 441034651 855 True 1013.0 1013 88.3310 1073 1913 1 chr1D.!!$R1 840
5 TraesCS3D01G286900 chr1B 598702025 598702921 896 True 998.0 998 87.0140 1029 1913 1 chr1B.!!$R1 884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.033405 TTGTAGGAGAGGTCGGGGAG 60.033 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 3698 0.89327 CATTTGTCCGGGGTTGAGCA 60.893 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.939939 TCCACCTCGCTTGCAGCA 61.940 61.111 0.00 0.00 42.58 4.41
18 19 2.749044 CCACCTCGCTTGCAGCAT 60.749 61.111 0.00 0.00 42.58 3.79
19 20 2.758089 CCACCTCGCTTGCAGCATC 61.758 63.158 0.00 0.00 42.58 3.91
20 21 2.816958 ACCTCGCTTGCAGCATCG 60.817 61.111 10.38 10.38 42.58 3.84
21 22 3.570638 CCTCGCTTGCAGCATCGG 61.571 66.667 15.03 7.87 42.58 4.18
22 23 4.233635 CTCGCTTGCAGCATCGGC 62.234 66.667 15.03 10.45 42.58 5.54
25 26 3.524606 GCTTGCAGCATCGGCCAT 61.525 61.111 2.24 0.00 41.89 4.40
26 27 2.411701 CTTGCAGCATCGGCCATG 59.588 61.111 2.24 7.19 42.56 3.66
27 28 3.133767 CTTGCAGCATCGGCCATGG 62.134 63.158 7.63 7.63 42.56 3.66
29 30 4.881440 GCAGCATCGGCCATGGGA 62.881 66.667 15.13 3.13 42.56 4.37
30 31 2.114625 CAGCATCGGCCATGGGAT 59.885 61.111 15.13 5.73 42.56 3.85
31 32 1.970114 CAGCATCGGCCATGGGATC 60.970 63.158 15.13 0.00 42.56 3.36
32 33 3.052082 GCATCGGCCATGGGATCG 61.052 66.667 15.13 5.23 32.37 3.69
33 34 3.052082 CATCGGCCATGGGATCGC 61.052 66.667 15.13 2.14 0.00 4.58
34 35 3.244580 ATCGGCCATGGGATCGCT 61.245 61.111 15.13 0.00 0.00 4.93
35 36 3.245668 ATCGGCCATGGGATCGCTC 62.246 63.158 15.13 0.00 0.00 5.03
37 38 4.241555 GGCCATGGGATCGCTCGT 62.242 66.667 15.13 0.00 0.00 4.18
38 39 2.663188 GCCATGGGATCGCTCGTC 60.663 66.667 15.13 0.00 0.00 4.20
39 40 2.355126 CCATGGGATCGCTCGTCG 60.355 66.667 11.46 0.00 40.15 5.12
40 41 3.032609 CATGGGATCGCTCGTCGC 61.033 66.667 11.46 0.00 38.27 5.19
41 42 4.286320 ATGGGATCGCTCGTCGCC 62.286 66.667 11.46 0.00 38.27 5.54
53 54 4.843719 GTCGCCCCCGCCGTATTT 62.844 66.667 0.00 0.00 0.00 1.40
54 55 4.098722 TCGCCCCCGCCGTATTTT 62.099 61.111 0.00 0.00 0.00 1.82
55 56 3.883180 CGCCCCCGCCGTATTTTG 61.883 66.667 0.00 0.00 0.00 2.44
56 57 4.201679 GCCCCCGCCGTATTTTGC 62.202 66.667 0.00 0.00 0.00 3.68
57 58 2.752238 CCCCCGCCGTATTTTGCA 60.752 61.111 0.00 0.00 0.00 4.08
58 59 2.770589 CCCCCGCCGTATTTTGCAG 61.771 63.158 0.00 0.00 0.00 4.41
59 60 2.043980 CCCCGCCGTATTTTGCAGT 61.044 57.895 0.00 0.00 0.00 4.40
60 61 1.136565 CCCGCCGTATTTTGCAGTG 59.863 57.895 0.00 0.00 0.00 3.66
61 62 1.302383 CCCGCCGTATTTTGCAGTGA 61.302 55.000 0.00 0.00 0.00 3.41
62 63 0.096976 CCGCCGTATTTTGCAGTGAG 59.903 55.000 0.00 0.00 0.00 3.51
63 64 1.075542 CGCCGTATTTTGCAGTGAGA 58.924 50.000 0.00 0.00 0.00 3.27
64 65 1.061131 CGCCGTATTTTGCAGTGAGAG 59.939 52.381 0.00 0.00 0.00 3.20
65 66 1.202076 GCCGTATTTTGCAGTGAGAGC 60.202 52.381 0.00 0.00 0.00 4.09
66 67 2.350522 CCGTATTTTGCAGTGAGAGCT 58.649 47.619 0.00 0.00 0.00 4.09
67 68 2.744202 CCGTATTTTGCAGTGAGAGCTT 59.256 45.455 0.00 0.00 0.00 3.74
68 69 3.425359 CCGTATTTTGCAGTGAGAGCTTG 60.425 47.826 0.00 0.00 0.00 4.01
69 70 2.719426 ATTTTGCAGTGAGAGCTTGC 57.281 45.000 0.21 0.21 0.00 4.01
70 71 1.391577 TTTTGCAGTGAGAGCTTGCA 58.608 45.000 5.92 5.92 0.00 4.08
71 72 0.949397 TTTGCAGTGAGAGCTTGCAG 59.051 50.000 9.77 0.00 36.82 4.41
72 73 0.887836 TTGCAGTGAGAGCTTGCAGG 60.888 55.000 9.77 0.00 36.82 4.85
73 74 2.688794 GCAGTGAGAGCTTGCAGGC 61.689 63.158 13.82 13.82 0.00 4.85
74 75 2.039405 CAGTGAGAGCTTGCAGGCC 61.039 63.158 18.27 9.14 0.00 5.19
75 76 2.033141 GTGAGAGCTTGCAGGCCA 59.967 61.111 18.27 5.62 0.00 5.36
76 77 1.378250 GTGAGAGCTTGCAGGCCAT 60.378 57.895 18.27 6.09 0.00 4.40
77 78 1.378119 TGAGAGCTTGCAGGCCATG 60.378 57.895 18.27 0.97 0.00 3.66
78 79 2.044252 AGAGCTTGCAGGCCATGG 60.044 61.111 18.27 7.63 0.00 3.66
79 80 3.834799 GAGCTTGCAGGCCATGGC 61.835 66.667 29.47 29.47 41.06 4.40
89 90 4.603535 GCCATGGCCGCCCCTAAT 62.604 66.667 27.24 0.00 34.56 1.73
90 91 2.198426 CCATGGCCGCCCCTAATT 59.802 61.111 7.03 0.00 0.00 1.40
91 92 1.903404 CCATGGCCGCCCCTAATTC 60.903 63.158 7.03 0.00 0.00 2.17
92 93 1.151450 CATGGCCGCCCCTAATTCT 59.849 57.895 7.03 0.00 0.00 2.40
93 94 0.400213 CATGGCCGCCCCTAATTCTA 59.600 55.000 7.03 0.00 0.00 2.10
94 95 1.004745 CATGGCCGCCCCTAATTCTAT 59.995 52.381 7.03 0.00 0.00 1.98
95 96 0.400213 TGGCCGCCCCTAATTCTATG 59.600 55.000 7.03 0.00 0.00 2.23
96 97 0.690762 GGCCGCCCCTAATTCTATGA 59.309 55.000 0.00 0.00 0.00 2.15
97 98 1.339151 GGCCGCCCCTAATTCTATGAG 60.339 57.143 0.00 0.00 0.00 2.90
98 99 1.946283 GCCGCCCCTAATTCTATGAGC 60.946 57.143 0.00 0.00 0.00 4.26
99 100 1.625818 CCGCCCCTAATTCTATGAGCT 59.374 52.381 0.00 0.00 0.00 4.09
100 101 2.354203 CCGCCCCTAATTCTATGAGCTC 60.354 54.545 6.82 6.82 0.00 4.09
101 102 2.672478 CGCCCCTAATTCTATGAGCTCG 60.672 54.545 9.64 0.00 0.00 5.03
102 103 2.933056 GCCCCTAATTCTATGAGCTCGC 60.933 54.545 9.64 0.00 0.00 5.03
103 104 2.300152 CCCCTAATTCTATGAGCTCGCA 59.700 50.000 9.64 0.00 0.00 5.10
104 105 3.055530 CCCCTAATTCTATGAGCTCGCAT 60.056 47.826 9.64 0.74 0.00 4.73
105 106 3.931468 CCCTAATTCTATGAGCTCGCATG 59.069 47.826 9.64 0.00 0.00 4.06
106 107 3.370366 CCTAATTCTATGAGCTCGCATGC 59.630 47.826 7.91 7.91 0.00 4.06
107 108 1.805869 ATTCTATGAGCTCGCATGCC 58.194 50.000 13.15 0.00 0.00 4.40
108 109 0.465287 TTCTATGAGCTCGCATGCCA 59.535 50.000 13.15 3.82 0.00 4.92
109 110 0.683412 TCTATGAGCTCGCATGCCAT 59.317 50.000 13.15 11.61 0.00 4.40
110 111 0.796927 CTATGAGCTCGCATGCCATG 59.203 55.000 13.15 0.00 0.00 3.66
111 112 0.604511 TATGAGCTCGCATGCCATGG 60.605 55.000 13.15 7.63 0.00 3.66
112 113 3.962421 GAGCTCGCATGCCATGGC 61.962 66.667 30.54 30.54 42.35 4.40
113 114 4.501285 AGCTCGCATGCCATGGCT 62.501 61.111 35.53 19.42 42.51 4.75
114 115 4.266070 GCTCGCATGCCATGGCTG 62.266 66.667 35.53 28.86 42.51 4.85
115 116 2.515290 CTCGCATGCCATGGCTGA 60.515 61.111 35.53 24.81 42.51 4.26
116 117 2.045143 TCGCATGCCATGGCTGAA 60.045 55.556 35.53 18.08 42.51 3.02
117 118 2.103538 CGCATGCCATGGCTGAAC 59.896 61.111 35.53 21.09 42.51 3.18
118 119 2.497770 GCATGCCATGGCTGAACC 59.502 61.111 35.53 16.36 42.51 3.62
119 120 2.056223 GCATGCCATGGCTGAACCT 61.056 57.895 35.53 11.81 42.51 3.50
120 121 2.012902 GCATGCCATGGCTGAACCTC 62.013 60.000 35.53 14.61 42.51 3.85
121 122 0.681887 CATGCCATGGCTGAACCTCA 60.682 55.000 35.53 14.91 42.51 3.86
122 123 0.682209 ATGCCATGGCTGAACCTCAC 60.682 55.000 35.53 4.98 42.51 3.51
123 124 1.303561 GCCATGGCTGAACCTCACA 60.304 57.895 29.98 0.00 40.22 3.58
124 125 0.682209 GCCATGGCTGAACCTCACAT 60.682 55.000 29.98 0.00 40.22 3.21
125 126 1.386533 CCATGGCTGAACCTCACATC 58.613 55.000 0.00 0.00 40.22 3.06
126 127 1.340308 CCATGGCTGAACCTCACATCA 60.340 52.381 0.00 0.00 40.22 3.07
127 128 2.014857 CATGGCTGAACCTCACATCAG 58.985 52.381 0.00 0.00 44.66 2.90
131 132 1.085091 CTGAACCTCACATCAGCAGC 58.915 55.000 0.00 0.00 36.92 5.25
132 133 0.397564 TGAACCTCACATCAGCAGCA 59.602 50.000 0.00 0.00 0.00 4.41
133 134 1.003928 TGAACCTCACATCAGCAGCAT 59.996 47.619 0.00 0.00 0.00 3.79
134 135 1.400846 GAACCTCACATCAGCAGCATG 59.599 52.381 0.00 0.00 40.87 4.06
135 136 0.616891 ACCTCACATCAGCAGCATGA 59.383 50.000 0.00 0.00 39.69 3.07
136 137 1.015109 CCTCACATCAGCAGCATGAC 58.985 55.000 0.00 0.00 39.69 3.06
137 138 0.651031 CTCACATCAGCAGCATGACG 59.349 55.000 0.00 0.00 39.69 4.35
138 139 0.037046 TCACATCAGCAGCATGACGT 60.037 50.000 0.00 0.00 39.69 4.34
139 140 0.096454 CACATCAGCAGCATGACGTG 59.904 55.000 0.00 6.65 39.69 4.49
140 141 0.321034 ACATCAGCAGCATGACGTGT 60.321 50.000 0.00 0.00 39.69 4.49
141 142 0.800631 CATCAGCAGCATGACGTGTT 59.199 50.000 0.00 0.00 39.69 3.32
142 143 1.198408 CATCAGCAGCATGACGTGTTT 59.802 47.619 0.00 0.00 39.69 2.83
143 144 0.587768 TCAGCAGCATGACGTGTTTG 59.412 50.000 0.00 0.00 39.69 2.93
144 145 0.386352 CAGCAGCATGACGTGTTTGG 60.386 55.000 0.00 0.00 39.69 3.28
145 146 1.730547 GCAGCATGACGTGTTTGGC 60.731 57.895 0.00 0.00 39.69 4.52
146 147 1.440850 CAGCATGACGTGTTTGGCG 60.441 57.895 0.00 0.00 39.69 5.69
147 148 2.126888 GCATGACGTGTTTGGCGG 60.127 61.111 0.00 0.00 0.00 6.13
148 149 2.612567 GCATGACGTGTTTGGCGGA 61.613 57.895 0.00 0.00 0.00 5.54
149 150 1.497278 CATGACGTGTTTGGCGGAG 59.503 57.895 0.00 0.00 0.00 4.63
150 151 0.948623 CATGACGTGTTTGGCGGAGA 60.949 55.000 0.00 0.00 0.00 3.71
151 152 0.670546 ATGACGTGTTTGGCGGAGAG 60.671 55.000 0.00 0.00 0.00 3.20
163 164 3.394836 GGAGAGCCCGTGGAGCTT 61.395 66.667 0.00 0.00 41.75 3.74
164 165 2.125350 GAGAGCCCGTGGAGCTTG 60.125 66.667 0.00 0.00 41.75 4.01
165 166 2.925170 AGAGCCCGTGGAGCTTGT 60.925 61.111 0.00 0.00 41.75 3.16
166 167 2.032681 GAGCCCGTGGAGCTTGTT 59.967 61.111 0.00 0.00 41.75 2.83
167 168 2.281761 AGCCCGTGGAGCTTGTTG 60.282 61.111 0.00 0.00 37.24 3.33
168 169 2.594592 GCCCGTGGAGCTTGTTGT 60.595 61.111 0.00 0.00 0.00 3.32
169 170 1.302192 GCCCGTGGAGCTTGTTGTA 60.302 57.895 0.00 0.00 0.00 2.41
170 171 1.298859 GCCCGTGGAGCTTGTTGTAG 61.299 60.000 0.00 0.00 0.00 2.74
171 172 0.673644 CCCGTGGAGCTTGTTGTAGG 60.674 60.000 0.00 0.00 0.00 3.18
172 173 0.320374 CCGTGGAGCTTGTTGTAGGA 59.680 55.000 0.00 0.00 0.00 2.94
173 174 1.673033 CCGTGGAGCTTGTTGTAGGAG 60.673 57.143 0.00 0.00 0.00 3.69
174 175 1.272490 CGTGGAGCTTGTTGTAGGAGA 59.728 52.381 0.00 0.00 0.00 3.71
175 176 2.672478 CGTGGAGCTTGTTGTAGGAGAG 60.672 54.545 0.00 0.00 0.00 3.20
176 177 1.902508 TGGAGCTTGTTGTAGGAGAGG 59.097 52.381 0.00 0.00 0.00 3.69
177 178 1.903183 GGAGCTTGTTGTAGGAGAGGT 59.097 52.381 0.00 0.00 0.00 3.85
178 179 2.093921 GGAGCTTGTTGTAGGAGAGGTC 60.094 54.545 0.00 0.00 34.92 3.85
179 180 1.546476 AGCTTGTTGTAGGAGAGGTCG 59.454 52.381 0.00 0.00 0.00 4.79
180 181 1.404315 GCTTGTTGTAGGAGAGGTCGG 60.404 57.143 0.00 0.00 0.00 4.79
181 182 1.204941 CTTGTTGTAGGAGAGGTCGGG 59.795 57.143 0.00 0.00 0.00 5.14
182 183 0.613853 TGTTGTAGGAGAGGTCGGGG 60.614 60.000 0.00 0.00 0.00 5.73
183 184 0.324091 GTTGTAGGAGAGGTCGGGGA 60.324 60.000 0.00 0.00 0.00 4.81
184 185 0.033405 TTGTAGGAGAGGTCGGGGAG 60.033 60.000 0.00 0.00 0.00 4.30
185 186 1.152715 GTAGGAGAGGTCGGGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
186 187 1.308481 TAGGAGAGGTCGGGGAGGA 60.308 63.158 0.00 0.00 0.00 3.71
187 188 1.354168 TAGGAGAGGTCGGGGAGGAG 61.354 65.000 0.00 0.00 0.00 3.69
188 189 2.691779 GGAGAGGTCGGGGAGGAGA 61.692 68.421 0.00 0.00 0.00 3.71
189 190 1.152839 GAGAGGTCGGGGAGGAGAG 60.153 68.421 0.00 0.00 0.00 3.20
190 191 2.835895 GAGGTCGGGGAGGAGAGC 60.836 72.222 0.00 0.00 35.33 4.09
191 192 4.467107 AGGTCGGGGAGGAGAGCC 62.467 72.222 0.00 0.00 35.67 4.70
192 193 4.779733 GGTCGGGGAGGAGAGCCA 62.780 72.222 0.00 0.00 36.29 4.75
193 194 2.683933 GTCGGGGAGGAGAGCCAA 60.684 66.667 0.00 0.00 36.29 4.52
194 195 2.364317 TCGGGGAGGAGAGCCAAG 60.364 66.667 0.00 0.00 36.29 3.61
195 196 2.364317 CGGGGAGGAGAGCCAAGA 60.364 66.667 0.00 0.00 36.29 3.02
196 197 1.990060 CGGGGAGGAGAGCCAAGAA 60.990 63.158 0.00 0.00 36.29 2.52
197 198 1.911471 GGGGAGGAGAGCCAAGAAG 59.089 63.158 0.00 0.00 36.29 2.85
198 199 0.618968 GGGGAGGAGAGCCAAGAAGA 60.619 60.000 0.00 0.00 36.29 2.87
199 200 1.506025 GGGAGGAGAGCCAAGAAGAT 58.494 55.000 0.00 0.00 36.29 2.40
200 201 1.843206 GGGAGGAGAGCCAAGAAGATT 59.157 52.381 0.00 0.00 36.29 2.40
201 202 2.421248 GGGAGGAGAGCCAAGAAGATTG 60.421 54.545 0.00 0.00 36.29 2.67
202 203 2.421248 GGAGGAGAGCCAAGAAGATTGG 60.421 54.545 2.19 2.19 42.37 3.16
203 204 1.563410 AGGAGAGCCAAGAAGATTGGG 59.437 52.381 8.62 0.00 39.90 4.12
204 205 1.387539 GAGAGCCAAGAAGATTGGGC 58.612 55.000 8.62 0.00 46.77 5.36
206 207 3.200522 GCCAAGAAGATTGGGCGG 58.799 61.111 8.62 0.00 39.90 6.13
207 208 3.068729 GCCAAGAAGATTGGGCGGC 62.069 63.158 0.00 0.00 39.90 6.53
208 209 2.764314 CCAAGAAGATTGGGCGGCG 61.764 63.158 0.51 0.51 35.96 6.46
209 210 1.745115 CAAGAAGATTGGGCGGCGA 60.745 57.895 12.98 0.00 0.00 5.54
210 211 1.745489 AAGAAGATTGGGCGGCGAC 60.745 57.895 12.98 8.16 0.00 5.19
222 223 4.808649 GGCGACGAGGTAGGAAAG 57.191 61.111 0.00 0.00 0.00 2.62
223 224 1.888736 GGCGACGAGGTAGGAAAGT 59.111 57.895 0.00 0.00 0.00 2.66
224 225 0.458025 GGCGACGAGGTAGGAAAGTG 60.458 60.000 0.00 0.00 0.00 3.16
225 226 0.524862 GCGACGAGGTAGGAAAGTGA 59.475 55.000 0.00 0.00 0.00 3.41
226 227 1.467713 GCGACGAGGTAGGAAAGTGAG 60.468 57.143 0.00 0.00 0.00 3.51
227 228 2.082231 CGACGAGGTAGGAAAGTGAGA 58.918 52.381 0.00 0.00 0.00 3.27
228 229 2.096174 CGACGAGGTAGGAAAGTGAGAG 59.904 54.545 0.00 0.00 0.00 3.20
229 230 3.345414 GACGAGGTAGGAAAGTGAGAGA 58.655 50.000 0.00 0.00 0.00 3.10
230 231 3.349022 ACGAGGTAGGAAAGTGAGAGAG 58.651 50.000 0.00 0.00 0.00 3.20
231 232 2.685897 CGAGGTAGGAAAGTGAGAGAGG 59.314 54.545 0.00 0.00 0.00 3.69
232 233 3.622704 CGAGGTAGGAAAGTGAGAGAGGA 60.623 52.174 0.00 0.00 0.00 3.71
233 234 4.542697 GAGGTAGGAAAGTGAGAGAGGAT 58.457 47.826 0.00 0.00 0.00 3.24
234 235 5.687970 CGAGGTAGGAAAGTGAGAGAGGATA 60.688 48.000 0.00 0.00 0.00 2.59
235 236 5.451354 AGGTAGGAAAGTGAGAGAGGATAC 58.549 45.833 0.00 0.00 0.00 2.24
236 237 4.276431 GGTAGGAAAGTGAGAGAGGATACG 59.724 50.000 0.00 0.00 46.39 3.06
237 238 4.237976 AGGAAAGTGAGAGAGGATACGA 57.762 45.455 0.00 0.00 46.39 3.43
238 239 4.798882 AGGAAAGTGAGAGAGGATACGAT 58.201 43.478 0.00 0.00 46.39 3.73
239 240 5.205056 AGGAAAGTGAGAGAGGATACGATT 58.795 41.667 0.00 0.00 46.39 3.34
240 241 5.659079 AGGAAAGTGAGAGAGGATACGATTT 59.341 40.000 0.00 0.00 46.39 2.17
241 242 5.751028 GGAAAGTGAGAGAGGATACGATTTG 59.249 44.000 0.00 0.00 46.39 2.32
242 243 4.927978 AGTGAGAGAGGATACGATTTGG 57.072 45.455 0.00 0.00 46.39 3.28
243 244 4.537751 AGTGAGAGAGGATACGATTTGGA 58.462 43.478 0.00 0.00 46.39 3.53
244 245 5.144100 AGTGAGAGAGGATACGATTTGGAT 58.856 41.667 0.00 0.00 46.39 3.41
245 246 5.010516 AGTGAGAGAGGATACGATTTGGATG 59.989 44.000 0.00 0.00 46.39 3.51
246 247 4.895889 TGAGAGAGGATACGATTTGGATGT 59.104 41.667 0.00 0.00 46.39 3.06
247 248 5.207110 AGAGAGGATACGATTTGGATGTG 57.793 43.478 0.00 0.00 46.39 3.21
248 249 4.039730 AGAGAGGATACGATTTGGATGTGG 59.960 45.833 0.00 0.00 46.39 4.17
249 250 3.711704 AGAGGATACGATTTGGATGTGGT 59.288 43.478 0.00 0.00 46.39 4.16
250 251 4.899457 AGAGGATACGATTTGGATGTGGTA 59.101 41.667 0.00 0.00 46.39 3.25
251 252 5.544176 AGAGGATACGATTTGGATGTGGTAT 59.456 40.000 0.00 0.00 46.39 2.73
252 253 5.551233 AGGATACGATTTGGATGTGGTATG 58.449 41.667 0.00 0.00 46.39 2.39
253 254 4.695455 GGATACGATTTGGATGTGGTATGG 59.305 45.833 0.00 0.00 0.00 2.74
254 255 3.644966 ACGATTTGGATGTGGTATGGT 57.355 42.857 0.00 0.00 0.00 3.55
255 256 3.278574 ACGATTTGGATGTGGTATGGTG 58.721 45.455 0.00 0.00 0.00 4.17
256 257 3.278574 CGATTTGGATGTGGTATGGTGT 58.721 45.455 0.00 0.00 0.00 4.16
257 258 3.065233 CGATTTGGATGTGGTATGGTGTG 59.935 47.826 0.00 0.00 0.00 3.82
258 259 2.505650 TTGGATGTGGTATGGTGTGG 57.494 50.000 0.00 0.00 0.00 4.17
259 260 0.623194 TGGATGTGGTATGGTGTGGG 59.377 55.000 0.00 0.00 0.00 4.61
260 261 0.106719 GGATGTGGTATGGTGTGGGG 60.107 60.000 0.00 0.00 0.00 4.96
261 262 0.916086 GATGTGGTATGGTGTGGGGA 59.084 55.000 0.00 0.00 0.00 4.81
262 263 1.283613 GATGTGGTATGGTGTGGGGAA 59.716 52.381 0.00 0.00 0.00 3.97
263 264 1.149986 TGTGGTATGGTGTGGGGAAA 58.850 50.000 0.00 0.00 0.00 3.13
264 265 1.499438 TGTGGTATGGTGTGGGGAAAA 59.501 47.619 0.00 0.00 0.00 2.29
265 266 2.167662 GTGGTATGGTGTGGGGAAAAG 58.832 52.381 0.00 0.00 0.00 2.27
266 267 2.066592 TGGTATGGTGTGGGGAAAAGA 58.933 47.619 0.00 0.00 0.00 2.52
267 268 2.652348 TGGTATGGTGTGGGGAAAAGAT 59.348 45.455 0.00 0.00 0.00 2.40
268 269 3.853181 TGGTATGGTGTGGGGAAAAGATA 59.147 43.478 0.00 0.00 0.00 1.98
269 270 4.292571 TGGTATGGTGTGGGGAAAAGATAA 59.707 41.667 0.00 0.00 0.00 1.75
270 271 4.887655 GGTATGGTGTGGGGAAAAGATAAG 59.112 45.833 0.00 0.00 0.00 1.73
271 272 4.946160 ATGGTGTGGGGAAAAGATAAGA 57.054 40.909 0.00 0.00 0.00 2.10
272 273 4.946160 TGGTGTGGGGAAAAGATAAGAT 57.054 40.909 0.00 0.00 0.00 2.40
273 274 6.590656 ATGGTGTGGGGAAAAGATAAGATA 57.409 37.500 0.00 0.00 0.00 1.98
274 275 6.395780 TGGTGTGGGGAAAAGATAAGATAA 57.604 37.500 0.00 0.00 0.00 1.75
275 276 6.423182 TGGTGTGGGGAAAAGATAAGATAAG 58.577 40.000 0.00 0.00 0.00 1.73
276 277 5.828328 GGTGTGGGGAAAAGATAAGATAAGG 59.172 44.000 0.00 0.00 0.00 2.69
277 278 5.828328 GTGTGGGGAAAAGATAAGATAAGGG 59.172 44.000 0.00 0.00 0.00 3.95
278 279 5.734140 TGTGGGGAAAAGATAAGATAAGGGA 59.266 40.000 0.00 0.00 0.00 4.20
279 280 6.062749 GTGGGGAAAAGATAAGATAAGGGAC 58.937 44.000 0.00 0.00 0.00 4.46
280 281 5.163237 TGGGGAAAAGATAAGATAAGGGACG 60.163 44.000 0.00 0.00 0.00 4.79
281 282 5.163227 GGGGAAAAGATAAGATAAGGGACGT 60.163 44.000 0.00 0.00 0.00 4.34
282 283 5.990386 GGGAAAAGATAAGATAAGGGACGTC 59.010 44.000 7.13 7.13 0.00 4.34
283 284 5.690857 GGAAAAGATAAGATAAGGGACGTCG 59.309 44.000 9.92 0.00 0.00 5.12
284 285 5.848833 AAAGATAAGATAAGGGACGTCGT 57.151 39.130 9.92 0.00 0.00 4.34
285 286 4.832590 AGATAAGATAAGGGACGTCGTG 57.167 45.455 9.92 0.00 0.00 4.35
286 287 2.857592 TAAGATAAGGGACGTCGTGC 57.142 50.000 8.56 8.56 0.00 5.34
288 289 1.588139 GATAAGGGACGTCGTGCGG 60.588 63.158 9.92 0.00 46.52 5.69
289 290 2.275547 GATAAGGGACGTCGTGCGGT 62.276 60.000 9.92 3.63 46.52 5.68
290 291 2.552585 ATAAGGGACGTCGTGCGGTG 62.553 60.000 9.92 0.00 46.52 4.94
304 305 3.702048 GGTGCGTGGGCCACTAGA 61.702 66.667 32.28 14.41 38.85 2.43
305 306 2.125512 GTGCGTGGGCCACTAGAG 60.126 66.667 32.28 18.78 38.85 2.43
306 307 4.082523 TGCGTGGGCCACTAGAGC 62.083 66.667 32.28 26.99 38.85 4.09
308 309 3.449227 CGTGGGCCACTAGAGCGA 61.449 66.667 32.28 0.00 31.34 4.93
309 310 2.184579 GTGGGCCACTAGAGCGAC 59.815 66.667 29.22 0.00 0.00 5.19
310 311 3.075005 TGGGCCACTAGAGCGACC 61.075 66.667 0.00 0.00 0.00 4.79
311 312 4.208686 GGGCCACTAGAGCGACCG 62.209 72.222 4.39 0.00 0.00 4.79
312 313 4.208686 GGCCACTAGAGCGACCGG 62.209 72.222 0.00 0.00 0.00 5.28
313 314 4.874977 GCCACTAGAGCGACCGGC 62.875 72.222 0.00 0.00 44.05 6.13
322 323 4.765611 GCGACCGGCTGAAATTTC 57.234 55.556 11.41 11.41 39.11 2.17
323 324 1.873165 GCGACCGGCTGAAATTTCA 59.127 52.632 19.45 19.45 39.11 2.69
330 331 4.771684 CTGAAATTTCAGCCGGCG 57.228 55.556 29.90 16.49 46.97 6.46
331 332 1.875963 CTGAAATTTCAGCCGGCGT 59.124 52.632 29.90 6.69 46.97 5.68
332 333 0.454957 CTGAAATTTCAGCCGGCGTG 60.455 55.000 29.90 19.40 46.97 5.34
333 334 1.801512 GAAATTTCAGCCGGCGTGC 60.802 57.895 23.20 9.34 0.00 5.34
334 335 3.281359 AAATTTCAGCCGGCGTGCC 62.281 57.895 23.20 0.00 0.00 5.01
347 348 2.968697 GTGCCGTCCCGAAACGTT 60.969 61.111 0.00 0.00 41.01 3.99
348 349 2.662527 TGCCGTCCCGAAACGTTC 60.663 61.111 0.00 0.00 41.01 3.95
349 350 3.417224 GCCGTCCCGAAACGTTCC 61.417 66.667 0.00 0.00 41.01 3.62
350 351 2.341176 CCGTCCCGAAACGTTCCT 59.659 61.111 0.00 0.00 41.01 3.36
351 352 1.301165 CCGTCCCGAAACGTTCCTT 60.301 57.895 0.00 0.00 41.01 3.36
352 353 0.881600 CCGTCCCGAAACGTTCCTTT 60.882 55.000 0.00 0.00 41.01 3.11
353 354 0.939419 CGTCCCGAAACGTTCCTTTT 59.061 50.000 0.00 0.00 37.86 2.27
354 355 1.331447 CGTCCCGAAACGTTCCTTTTT 59.669 47.619 0.00 0.00 37.86 1.94
389 390 9.956720 GATACAATTGTGATTGAATAAAGGAGG 57.043 33.333 21.42 0.00 44.37 4.30
390 391 9.699410 ATACAATTGTGATTGAATAAAGGAGGA 57.301 29.630 21.42 0.00 44.37 3.71
391 392 8.059798 ACAATTGTGATTGAATAAAGGAGGAG 57.940 34.615 11.07 0.00 44.37 3.69
392 393 7.890127 ACAATTGTGATTGAATAAAGGAGGAGA 59.110 33.333 11.07 0.00 44.37 3.71
393 394 8.910944 CAATTGTGATTGAATAAAGGAGGAGAT 58.089 33.333 0.00 0.00 44.37 2.75
394 395 7.870509 TTGTGATTGAATAAAGGAGGAGATG 57.129 36.000 0.00 0.00 0.00 2.90
395 396 7.199167 TGTGATTGAATAAAGGAGGAGATGA 57.801 36.000 0.00 0.00 0.00 2.92
396 397 7.809238 TGTGATTGAATAAAGGAGGAGATGAT 58.191 34.615 0.00 0.00 0.00 2.45
397 398 8.277197 TGTGATTGAATAAAGGAGGAGATGATT 58.723 33.333 0.00 0.00 0.00 2.57
398 399 9.129532 GTGATTGAATAAAGGAGGAGATGATTT 57.870 33.333 0.00 0.00 0.00 2.17
399 400 9.128404 TGATTGAATAAAGGAGGAGATGATTTG 57.872 33.333 0.00 0.00 0.00 2.32
400 401 9.129532 GATTGAATAAAGGAGGAGATGATTTGT 57.870 33.333 0.00 0.00 0.00 2.83
401 402 8.511604 TTGAATAAAGGAGGAGATGATTTGTC 57.488 34.615 0.00 0.00 0.00 3.18
402 403 7.632861 TGAATAAAGGAGGAGATGATTTGTCA 58.367 34.615 0.00 0.00 0.00 3.58
403 404 8.108999 TGAATAAAGGAGGAGATGATTTGTCAA 58.891 33.333 0.00 0.00 0.00 3.18
404 405 8.884124 AATAAAGGAGGAGATGATTTGTCAAA 57.116 30.769 0.00 0.00 0.00 2.69
405 406 8.884124 ATAAAGGAGGAGATGATTTGTCAAAA 57.116 30.769 1.31 0.00 0.00 2.44
406 407 7.601705 AAAGGAGGAGATGATTTGTCAAAAA 57.398 32.000 1.31 0.00 0.00 1.94
427 428 2.088104 AGATTGGACAGCCGGATCTA 57.912 50.000 5.05 0.00 37.69 1.98
428 429 1.967066 AGATTGGACAGCCGGATCTAG 59.033 52.381 5.05 0.00 37.69 2.43
448 449 1.730612 GTGACCCGACCGATCTTTTTC 59.269 52.381 0.00 0.00 0.00 2.29
480 482 1.727022 CGTCCGACGCGTAACACTT 60.727 57.895 13.97 0.00 33.65 3.16
481 483 1.270777 CGTCCGACGCGTAACACTTT 61.271 55.000 13.97 0.00 33.65 2.66
482 484 0.160182 GTCCGACGCGTAACACTTTG 59.840 55.000 13.97 0.00 0.00 2.77
483 485 0.940519 TCCGACGCGTAACACTTTGG 60.941 55.000 13.97 0.12 0.00 3.28
603 2203 2.035066 GTGTCGTGTGTACCACCTTAGT 59.965 50.000 8.36 0.00 41.26 2.24
606 2206 4.122046 GTCGTGTGTACCACCTTAGTTTT 58.878 43.478 8.36 0.00 41.26 2.43
607 2207 4.571984 GTCGTGTGTACCACCTTAGTTTTT 59.428 41.667 8.36 0.00 41.26 1.94
936 2542 2.738521 CGGCACCCAAGACTCACG 60.739 66.667 0.00 0.00 0.00 4.35
1732 3338 2.047274 CGATCCTGGGCAACGTGT 60.047 61.111 0.00 0.00 37.60 4.49
1980 3601 0.462047 CTAATGCCCAGTCACGTCCC 60.462 60.000 0.00 0.00 0.00 4.46
2069 3698 2.237643 TGAACCATACCGTACATTGCCT 59.762 45.455 0.00 0.00 0.00 4.75
2070 3699 2.325583 ACCATACCGTACATTGCCTG 57.674 50.000 0.00 0.00 0.00 4.85
2071 3700 0.944386 CCATACCGTACATTGCCTGC 59.056 55.000 0.00 0.00 0.00 4.85
2072 3701 1.475034 CCATACCGTACATTGCCTGCT 60.475 52.381 0.00 0.00 0.00 4.24
2073 3702 1.867233 CATACCGTACATTGCCTGCTC 59.133 52.381 0.00 0.00 0.00 4.26
2074 3703 0.899019 TACCGTACATTGCCTGCTCA 59.101 50.000 0.00 0.00 0.00 4.26
2076 3705 0.447801 CCGTACATTGCCTGCTCAAC 59.552 55.000 0.00 0.00 0.00 3.18
2080 3709 2.361610 ATTGCCTGCTCAACCCCG 60.362 61.111 0.00 0.00 0.00 5.73
2128 3757 2.422127 CCCTGTACCTGTAATTTTGCGG 59.578 50.000 0.00 0.00 0.00 5.69
2242 3873 6.480320 GGTACAAATCAAATATGCTCGTCTCT 59.520 38.462 0.00 0.00 0.00 3.10
2323 3955 3.165875 AGCTTCTGTACCTGCTTGTCTA 58.834 45.455 0.00 0.00 30.96 2.59
2324 3956 3.772025 AGCTTCTGTACCTGCTTGTCTAT 59.228 43.478 0.00 0.00 30.96 1.98
2333 3965 8.706322 TGTACCTGCTTGTCTATCTCAATATA 57.294 34.615 0.00 0.00 0.00 0.86
2334 3966 8.797438 TGTACCTGCTTGTCTATCTCAATATAG 58.203 37.037 0.00 0.00 0.00 1.31
2336 3968 8.941995 ACCTGCTTGTCTATCTCAATATAGTA 57.058 34.615 0.00 0.00 32.31 1.82
2337 3969 9.368416 ACCTGCTTGTCTATCTCAATATAGTAA 57.632 33.333 0.00 0.00 32.31 2.24
2380 4013 2.381725 AGCTTACCAAACTAGCCGTC 57.618 50.000 0.00 0.00 35.53 4.79
2382 4015 1.670967 GCTTACCAAACTAGCCGTCGT 60.671 52.381 0.00 0.00 0.00 4.34
2383 4016 2.680577 CTTACCAAACTAGCCGTCGTT 58.319 47.619 0.00 0.00 0.00 3.85
2384 4017 2.068837 TACCAAACTAGCCGTCGTTG 57.931 50.000 0.00 0.00 0.00 4.10
2395 4028 2.751688 GTCGTTGGCCCCTTGGTA 59.248 61.111 0.00 0.00 0.00 3.25
2436 4185 3.297830 TGATAAGTGTCACACGTCAGG 57.702 47.619 0.00 0.00 39.64 3.86
2466 4215 3.185797 ACATGGCTACTTCGAACGTTTTC 59.814 43.478 0.46 0.00 0.00 2.29
2484 4233 5.748592 GTTTTCGACAGCAAGTTTAGTGAT 58.251 37.500 0.00 0.00 0.00 3.06
2488 4237 1.806542 ACAGCAAGTTTAGTGATGCGG 59.193 47.619 0.00 0.00 43.39 5.69
2524 4273 1.042229 TGCAGAGCATGGCAACTTTT 58.958 45.000 0.00 0.00 37.03 2.27
2531 4280 1.528161 GCATGGCAACTTTTGTGCTTC 59.472 47.619 0.00 0.00 37.61 3.86
2538 4287 4.267690 GGCAACTTTTGTGCTTCAGTTTAC 59.732 41.667 0.00 0.00 0.00 2.01
2545 4294 8.034804 ACTTTTGTGCTTCAGTTTACTTTTGAT 58.965 29.630 0.00 0.00 0.00 2.57
2559 4308 9.058424 GTTTACTTTTGATATAAACTTGCCGTC 57.942 33.333 0.00 0.00 36.37 4.79
2575 4324 2.918131 GCCGTCTGTCACTGAAAATTGC 60.918 50.000 0.00 0.00 0.00 3.56
2582 4331 3.256383 TGTCACTGAAAATTGCCATCCTG 59.744 43.478 0.00 0.00 0.00 3.86
2583 4332 2.231964 TCACTGAAAATTGCCATCCTGC 59.768 45.455 0.00 0.00 0.00 4.85
2588 4337 0.611618 AAATTGCCATCCTGCCGTGA 60.612 50.000 0.00 0.00 0.00 4.35
2603 4352 1.202065 CCGTGACTGAAATTGCCATCG 60.202 52.381 0.00 0.00 0.00 3.84
2609 4358 4.981674 TGACTGAAATTGCCATCGAAAAAC 59.018 37.500 0.00 0.00 0.00 2.43
2620 4369 2.791383 TCGAAAAACGTTAGGTCCGA 57.209 45.000 0.00 4.23 43.13 4.55
2625 4374 1.505425 AAACGTTAGGTCCGAAGTGC 58.495 50.000 0.00 0.00 0.00 4.40
2649 4398 0.249699 CACCTGACGTGTGGCACTTA 60.250 55.000 19.83 0.00 37.73 2.24
2655 4404 3.407698 TGACGTGTGGCACTTATCATTT 58.592 40.909 19.83 0.00 31.34 2.32
2687 4436 6.429791 TTTCAGATGTGTCGTTTTCTTTGA 57.570 33.333 0.00 0.00 0.00 2.69
2691 4440 5.904080 CAGATGTGTCGTTTTCTTTGAAGAC 59.096 40.000 0.00 0.00 34.13 3.01
2697 4446 5.355630 TGTCGTTTTCTTTGAAGACATTGGA 59.644 36.000 0.00 0.00 34.24 3.53
2767 4677 7.446625 AGGCATGAGATATACTTCATGAAAACC 59.553 37.037 22.96 16.66 41.58 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.411701 CATGGCCGATGCTGCAAG 59.588 61.111 6.36 3.78 37.74 4.01
10 11 3.142162 CCATGGCCGATGCTGCAA 61.142 61.111 6.36 0.00 37.74 4.08
12 13 4.881440 TCCCATGGCCGATGCTGC 62.881 66.667 6.09 0.00 37.74 5.25
13 14 1.970114 GATCCCATGGCCGATGCTG 60.970 63.158 6.09 0.00 37.74 4.41
14 15 2.433446 GATCCCATGGCCGATGCT 59.567 61.111 6.09 0.00 37.74 3.79
15 16 3.052082 CGATCCCATGGCCGATGC 61.052 66.667 6.09 0.00 0.00 3.91
16 17 3.052082 GCGATCCCATGGCCGATG 61.052 66.667 19.16 3.07 0.00 3.84
17 18 3.244580 AGCGATCCCATGGCCGAT 61.245 61.111 19.16 12.26 34.22 4.18
18 19 3.928779 GAGCGATCCCATGGCCGA 61.929 66.667 19.16 8.17 34.22 5.54
20 21 4.241555 ACGAGCGATCCCATGGCC 62.242 66.667 6.09 0.00 34.22 5.36
21 22 2.663188 GACGAGCGATCCCATGGC 60.663 66.667 6.09 0.00 0.00 4.40
22 23 2.355126 CGACGAGCGATCCCATGG 60.355 66.667 4.14 4.14 44.57 3.66
23 24 3.032609 GCGACGAGCGATCCCATG 61.033 66.667 0.00 0.00 44.57 3.66
39 40 4.201679 GCAAAATACGGCGGGGGC 62.202 66.667 13.24 1.92 0.00 5.80
40 41 2.752238 TGCAAAATACGGCGGGGG 60.752 61.111 13.24 0.00 0.00 5.40
41 42 2.043980 ACTGCAAAATACGGCGGGG 61.044 57.895 13.24 0.00 40.71 5.73
42 43 1.136565 CACTGCAAAATACGGCGGG 59.863 57.895 13.24 0.00 40.71 6.13
43 44 0.096976 CTCACTGCAAAATACGGCGG 59.903 55.000 13.24 0.00 42.11 6.13
44 45 1.061131 CTCTCACTGCAAAATACGGCG 59.939 52.381 4.80 4.80 0.00 6.46
45 46 1.202076 GCTCTCACTGCAAAATACGGC 60.202 52.381 0.00 0.00 0.00 5.68
46 47 2.350522 AGCTCTCACTGCAAAATACGG 58.649 47.619 0.00 0.00 0.00 4.02
47 48 3.740590 CAAGCTCTCACTGCAAAATACG 58.259 45.455 0.00 0.00 0.00 3.06
48 49 3.058016 TGCAAGCTCTCACTGCAAAATAC 60.058 43.478 7.55 0.00 32.17 1.89
49 50 3.148412 TGCAAGCTCTCACTGCAAAATA 58.852 40.909 7.55 0.00 32.17 1.40
50 51 1.958579 TGCAAGCTCTCACTGCAAAAT 59.041 42.857 7.55 0.00 32.17 1.82
51 52 1.335810 CTGCAAGCTCTCACTGCAAAA 59.664 47.619 10.98 0.00 34.96 2.44
52 53 0.949397 CTGCAAGCTCTCACTGCAAA 59.051 50.000 10.98 0.00 34.96 3.68
53 54 0.887836 CCTGCAAGCTCTCACTGCAA 60.888 55.000 10.98 0.00 34.96 4.08
54 55 1.302271 CCTGCAAGCTCTCACTGCA 60.302 57.895 9.54 9.54 0.00 4.41
55 56 2.688794 GCCTGCAAGCTCTCACTGC 61.689 63.158 0.00 0.21 0.00 4.40
56 57 2.039405 GGCCTGCAAGCTCTCACTG 61.039 63.158 7.34 0.00 0.00 3.66
57 58 1.849975 ATGGCCTGCAAGCTCTCACT 61.850 55.000 7.34 0.00 0.00 3.41
58 59 1.378250 ATGGCCTGCAAGCTCTCAC 60.378 57.895 7.34 0.00 0.00 3.51
59 60 1.378119 CATGGCCTGCAAGCTCTCA 60.378 57.895 7.34 0.00 0.00 3.27
60 61 2.119655 CCATGGCCTGCAAGCTCTC 61.120 63.158 7.34 0.00 0.00 3.20
61 62 2.044252 CCATGGCCTGCAAGCTCT 60.044 61.111 7.34 0.00 0.00 4.09
62 63 3.834799 GCCATGGCCTGCAAGCTC 61.835 66.667 27.24 0.00 34.56 4.09
72 73 4.603535 ATTAGGGGCGGCCATGGC 62.604 66.667 29.47 29.47 41.06 4.40
73 74 1.903404 GAATTAGGGGCGGCCATGG 60.903 63.158 30.95 7.63 0.00 3.66
74 75 0.400213 TAGAATTAGGGGCGGCCATG 59.600 55.000 30.95 0.00 0.00 3.66
75 76 1.004745 CATAGAATTAGGGGCGGCCAT 59.995 52.381 30.95 26.64 0.00 4.40
76 77 0.400213 CATAGAATTAGGGGCGGCCA 59.600 55.000 30.95 10.09 0.00 5.36
77 78 0.690762 TCATAGAATTAGGGGCGGCC 59.309 55.000 22.00 22.00 0.00 6.13
78 79 1.946283 GCTCATAGAATTAGGGGCGGC 60.946 57.143 0.00 0.00 25.96 6.53
79 80 1.625818 AGCTCATAGAATTAGGGGCGG 59.374 52.381 0.00 0.00 41.81 6.13
80 81 2.672478 CGAGCTCATAGAATTAGGGGCG 60.672 54.545 15.40 0.00 41.81 6.13
81 82 2.933056 GCGAGCTCATAGAATTAGGGGC 60.933 54.545 15.40 0.00 37.33 5.80
82 83 2.300152 TGCGAGCTCATAGAATTAGGGG 59.700 50.000 15.40 0.00 0.00 4.79
83 84 3.667497 TGCGAGCTCATAGAATTAGGG 57.333 47.619 15.40 0.00 0.00 3.53
84 85 3.370366 GCATGCGAGCTCATAGAATTAGG 59.630 47.826 15.40 0.00 0.00 2.69
85 86 3.370366 GGCATGCGAGCTCATAGAATTAG 59.630 47.826 15.40 0.00 34.17 1.73
86 87 3.244181 TGGCATGCGAGCTCATAGAATTA 60.244 43.478 15.40 0.00 34.17 1.40
87 88 2.149578 GGCATGCGAGCTCATAGAATT 58.850 47.619 15.40 0.00 34.17 2.17
88 89 1.071228 TGGCATGCGAGCTCATAGAAT 59.929 47.619 15.40 0.00 34.17 2.40
89 90 0.465287 TGGCATGCGAGCTCATAGAA 59.535 50.000 15.40 0.00 34.17 2.10
90 91 0.683412 ATGGCATGCGAGCTCATAGA 59.317 50.000 15.40 0.00 34.17 1.98
91 92 0.796927 CATGGCATGCGAGCTCATAG 59.203 55.000 15.53 0.00 34.17 2.23
92 93 0.604511 CCATGGCATGCGAGCTCATA 60.605 55.000 22.02 1.46 34.17 2.15
93 94 1.897137 CCATGGCATGCGAGCTCAT 60.897 57.895 22.02 6.07 34.17 2.90
94 95 2.515290 CCATGGCATGCGAGCTCA 60.515 61.111 22.02 3.57 34.17 4.26
95 96 3.962421 GCCATGGCATGCGAGCTC 61.962 66.667 32.08 2.73 41.49 4.09
96 97 4.501285 AGCCATGGCATGCGAGCT 62.501 61.111 37.18 20.72 44.88 4.09
97 98 4.266070 CAGCCATGGCATGCGAGC 62.266 66.667 37.18 18.86 44.88 5.03
98 99 2.116533 TTCAGCCATGGCATGCGAG 61.117 57.895 37.18 18.94 44.88 5.03
99 100 2.045143 TTCAGCCATGGCATGCGA 60.045 55.556 37.18 23.84 44.88 5.10
100 101 2.103538 GTTCAGCCATGGCATGCG 59.896 61.111 37.18 22.01 44.88 4.73
101 102 2.012902 GAGGTTCAGCCATGGCATGC 62.013 60.000 37.18 22.68 44.88 4.06
102 103 0.681887 TGAGGTTCAGCCATGGCATG 60.682 55.000 37.18 28.97 44.88 4.06
103 104 0.682209 GTGAGGTTCAGCCATGGCAT 60.682 55.000 37.18 20.09 44.88 4.40
104 105 1.303561 GTGAGGTTCAGCCATGGCA 60.304 57.895 37.18 16.60 44.88 4.92
105 106 0.682209 ATGTGAGGTTCAGCCATGGC 60.682 55.000 30.12 30.12 40.61 4.40
106 107 1.340308 TGATGTGAGGTTCAGCCATGG 60.340 52.381 7.63 7.63 40.61 3.66
107 108 2.014857 CTGATGTGAGGTTCAGCCATG 58.985 52.381 0.00 0.00 40.61 3.66
108 109 2.414994 CTGATGTGAGGTTCAGCCAT 57.585 50.000 0.00 0.00 40.61 4.40
109 110 3.942351 CTGATGTGAGGTTCAGCCA 57.058 52.632 0.00 0.00 40.61 4.75
112 113 1.085091 GCTGCTGATGTGAGGTTCAG 58.915 55.000 0.00 0.00 41.84 3.02
113 114 0.397564 TGCTGCTGATGTGAGGTTCA 59.602 50.000 0.00 0.00 0.00 3.18
114 115 1.400846 CATGCTGCTGATGTGAGGTTC 59.599 52.381 0.00 0.00 0.00 3.62
115 116 1.003928 TCATGCTGCTGATGTGAGGTT 59.996 47.619 0.00 0.00 0.00 3.50
116 117 0.616891 TCATGCTGCTGATGTGAGGT 59.383 50.000 0.00 0.00 0.00 3.85
117 118 1.015109 GTCATGCTGCTGATGTGAGG 58.985 55.000 0.00 0.00 0.00 3.86
118 119 0.651031 CGTCATGCTGCTGATGTGAG 59.349 55.000 0.00 0.00 0.00 3.51
119 120 0.037046 ACGTCATGCTGCTGATGTGA 60.037 50.000 19.19 7.00 42.38 3.58
120 121 2.463592 ACGTCATGCTGCTGATGTG 58.536 52.632 19.19 8.74 42.38 3.21
121 122 0.321034 ACACGTCATGCTGCTGATGT 60.321 50.000 16.14 16.14 44.29 3.06
122 123 0.800631 AACACGTCATGCTGCTGATG 59.199 50.000 15.20 15.20 38.00 3.07
123 124 1.198408 CAAACACGTCATGCTGCTGAT 59.802 47.619 0.00 0.00 0.00 2.90
124 125 0.587768 CAAACACGTCATGCTGCTGA 59.412 50.000 0.00 0.00 0.00 4.26
125 126 0.386352 CCAAACACGTCATGCTGCTG 60.386 55.000 0.00 0.00 0.00 4.41
126 127 1.951510 CCAAACACGTCATGCTGCT 59.048 52.632 0.00 0.00 0.00 4.24
127 128 1.730547 GCCAAACACGTCATGCTGC 60.731 57.895 0.00 0.00 0.00 5.25
128 129 1.440850 CGCCAAACACGTCATGCTG 60.441 57.895 0.00 0.00 0.00 4.41
129 130 2.616330 CCGCCAAACACGTCATGCT 61.616 57.895 0.00 0.00 0.00 3.79
130 131 2.126888 CCGCCAAACACGTCATGC 60.127 61.111 0.00 0.00 0.00 4.06
131 132 0.948623 TCTCCGCCAAACACGTCATG 60.949 55.000 0.00 0.00 0.00 3.07
132 133 0.670546 CTCTCCGCCAAACACGTCAT 60.671 55.000 0.00 0.00 0.00 3.06
133 134 1.300620 CTCTCCGCCAAACACGTCA 60.301 57.895 0.00 0.00 0.00 4.35
134 135 2.668280 GCTCTCCGCCAAACACGTC 61.668 63.158 0.00 0.00 0.00 4.34
135 136 2.665185 GCTCTCCGCCAAACACGT 60.665 61.111 0.00 0.00 0.00 4.49
146 147 3.394836 AAGCTCCACGGGCTCTCC 61.395 66.667 0.00 0.00 39.30 3.71
147 148 2.125350 CAAGCTCCACGGGCTCTC 60.125 66.667 0.00 0.00 39.30 3.20
148 149 2.520536 AACAAGCTCCACGGGCTCT 61.521 57.895 0.00 0.00 39.30 4.09
149 150 2.032681 AACAAGCTCCACGGGCTC 59.967 61.111 0.00 0.00 39.30 4.70
150 151 1.764571 TACAACAAGCTCCACGGGCT 61.765 55.000 0.00 0.00 42.31 5.19
151 152 1.298859 CTACAACAAGCTCCACGGGC 61.299 60.000 0.00 0.00 0.00 6.13
152 153 0.673644 CCTACAACAAGCTCCACGGG 60.674 60.000 0.00 0.00 0.00 5.28
153 154 0.320374 TCCTACAACAAGCTCCACGG 59.680 55.000 0.00 0.00 0.00 4.94
154 155 1.272490 TCTCCTACAACAAGCTCCACG 59.728 52.381 0.00 0.00 0.00 4.94
155 156 2.354203 CCTCTCCTACAACAAGCTCCAC 60.354 54.545 0.00 0.00 0.00 4.02
156 157 1.902508 CCTCTCCTACAACAAGCTCCA 59.097 52.381 0.00 0.00 0.00 3.86
157 158 1.903183 ACCTCTCCTACAACAAGCTCC 59.097 52.381 0.00 0.00 0.00 4.70
158 159 2.416162 CGACCTCTCCTACAACAAGCTC 60.416 54.545 0.00 0.00 0.00 4.09
159 160 1.546476 CGACCTCTCCTACAACAAGCT 59.454 52.381 0.00 0.00 0.00 3.74
160 161 1.404315 CCGACCTCTCCTACAACAAGC 60.404 57.143 0.00 0.00 0.00 4.01
161 162 1.204941 CCCGACCTCTCCTACAACAAG 59.795 57.143 0.00 0.00 0.00 3.16
162 163 1.263356 CCCGACCTCTCCTACAACAA 58.737 55.000 0.00 0.00 0.00 2.83
163 164 0.613853 CCCCGACCTCTCCTACAACA 60.614 60.000 0.00 0.00 0.00 3.33
164 165 0.324091 TCCCCGACCTCTCCTACAAC 60.324 60.000 0.00 0.00 0.00 3.32
165 166 0.033405 CTCCCCGACCTCTCCTACAA 60.033 60.000 0.00 0.00 0.00 2.41
166 167 1.613610 CTCCCCGACCTCTCCTACA 59.386 63.158 0.00 0.00 0.00 2.74
167 168 1.152715 CCTCCCCGACCTCTCCTAC 60.153 68.421 0.00 0.00 0.00 3.18
168 169 1.308481 TCCTCCCCGACCTCTCCTA 60.308 63.158 0.00 0.00 0.00 2.94
169 170 2.617538 TCCTCCCCGACCTCTCCT 60.618 66.667 0.00 0.00 0.00 3.69
170 171 2.123640 CTCCTCCCCGACCTCTCC 60.124 72.222 0.00 0.00 0.00 3.71
171 172 1.152839 CTCTCCTCCCCGACCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
172 173 3.011885 CTCTCCTCCCCGACCTCT 58.988 66.667 0.00 0.00 0.00 3.69
173 174 2.835895 GCTCTCCTCCCCGACCTC 60.836 72.222 0.00 0.00 0.00 3.85
174 175 4.467107 GGCTCTCCTCCCCGACCT 62.467 72.222 0.00 0.00 0.00 3.85
175 176 4.779733 TGGCTCTCCTCCCCGACC 62.780 72.222 0.00 0.00 0.00 4.79
176 177 2.683933 TTGGCTCTCCTCCCCGAC 60.684 66.667 0.00 0.00 0.00 4.79
177 178 2.364317 CTTGGCTCTCCTCCCCGA 60.364 66.667 0.00 0.00 0.00 5.14
178 179 1.965754 CTTCTTGGCTCTCCTCCCCG 61.966 65.000 0.00 0.00 0.00 5.73
179 180 0.618968 TCTTCTTGGCTCTCCTCCCC 60.619 60.000 0.00 0.00 0.00 4.81
180 181 1.506025 ATCTTCTTGGCTCTCCTCCC 58.494 55.000 0.00 0.00 0.00 4.30
181 182 2.421248 CCAATCTTCTTGGCTCTCCTCC 60.421 54.545 0.00 0.00 32.18 4.30
182 183 2.421248 CCCAATCTTCTTGGCTCTCCTC 60.421 54.545 0.00 0.00 38.23 3.71
183 184 1.563410 CCCAATCTTCTTGGCTCTCCT 59.437 52.381 0.00 0.00 38.23 3.69
184 185 2.021208 GCCCAATCTTCTTGGCTCTCC 61.021 57.143 0.00 0.00 40.77 3.71
185 186 1.387539 GCCCAATCTTCTTGGCTCTC 58.612 55.000 0.00 0.00 40.77 3.20
186 187 0.393537 CGCCCAATCTTCTTGGCTCT 60.394 55.000 0.00 0.00 41.80 4.09
187 188 1.379642 CCGCCCAATCTTCTTGGCTC 61.380 60.000 0.00 0.00 41.80 4.70
188 189 1.379044 CCGCCCAATCTTCTTGGCT 60.379 57.895 0.00 0.00 41.80 4.75
189 190 3.068729 GCCGCCCAATCTTCTTGGC 62.069 63.158 0.00 0.00 38.23 4.52
190 191 2.764314 CGCCGCCCAATCTTCTTGG 61.764 63.158 0.00 0.00 39.25 3.61
191 192 1.745115 TCGCCGCCCAATCTTCTTG 60.745 57.895 0.00 0.00 0.00 3.02
192 193 1.745489 GTCGCCGCCCAATCTTCTT 60.745 57.895 0.00 0.00 0.00 2.52
193 194 2.125106 GTCGCCGCCCAATCTTCT 60.125 61.111 0.00 0.00 0.00 2.85
194 195 3.564027 CGTCGCCGCCCAATCTTC 61.564 66.667 0.00 0.00 0.00 2.87
195 196 4.077184 TCGTCGCCGCCCAATCTT 62.077 61.111 0.00 0.00 0.00 2.40
196 197 4.514577 CTCGTCGCCGCCCAATCT 62.515 66.667 0.00 0.00 0.00 2.40
203 204 3.346631 TTTCCTACCTCGTCGCCGC 62.347 63.158 0.00 0.00 0.00 6.53
204 205 1.226603 CTTTCCTACCTCGTCGCCG 60.227 63.158 0.00 0.00 0.00 6.46
205 206 0.458025 CACTTTCCTACCTCGTCGCC 60.458 60.000 0.00 0.00 0.00 5.54
206 207 0.524862 TCACTTTCCTACCTCGTCGC 59.475 55.000 0.00 0.00 0.00 5.19
207 208 2.082231 TCTCACTTTCCTACCTCGTCG 58.918 52.381 0.00 0.00 0.00 5.12
208 209 3.345414 TCTCTCACTTTCCTACCTCGTC 58.655 50.000 0.00 0.00 0.00 4.20
209 210 3.349022 CTCTCTCACTTTCCTACCTCGT 58.651 50.000 0.00 0.00 0.00 4.18
210 211 2.685897 CCTCTCTCACTTTCCTACCTCG 59.314 54.545 0.00 0.00 0.00 4.63
211 212 3.970842 TCCTCTCTCACTTTCCTACCTC 58.029 50.000 0.00 0.00 0.00 3.85
212 213 4.618378 ATCCTCTCTCACTTTCCTACCT 57.382 45.455 0.00 0.00 0.00 3.08
213 214 4.276431 CGTATCCTCTCTCACTTTCCTACC 59.724 50.000 0.00 0.00 0.00 3.18
214 215 5.124645 TCGTATCCTCTCTCACTTTCCTAC 58.875 45.833 0.00 0.00 0.00 3.18
215 216 5.369409 TCGTATCCTCTCTCACTTTCCTA 57.631 43.478 0.00 0.00 0.00 2.94
216 217 4.237976 TCGTATCCTCTCTCACTTTCCT 57.762 45.455 0.00 0.00 0.00 3.36
217 218 5.523438 AATCGTATCCTCTCTCACTTTCC 57.477 43.478 0.00 0.00 0.00 3.13
218 219 5.751028 CCAAATCGTATCCTCTCTCACTTTC 59.249 44.000 0.00 0.00 0.00 2.62
219 220 5.422331 TCCAAATCGTATCCTCTCTCACTTT 59.578 40.000 0.00 0.00 0.00 2.66
220 221 4.956700 TCCAAATCGTATCCTCTCTCACTT 59.043 41.667 0.00 0.00 0.00 3.16
221 222 4.537751 TCCAAATCGTATCCTCTCTCACT 58.462 43.478 0.00 0.00 0.00 3.41
222 223 4.920640 TCCAAATCGTATCCTCTCTCAC 57.079 45.455 0.00 0.00 0.00 3.51
223 224 4.895889 ACATCCAAATCGTATCCTCTCTCA 59.104 41.667 0.00 0.00 0.00 3.27
224 225 5.226396 CACATCCAAATCGTATCCTCTCTC 58.774 45.833 0.00 0.00 0.00 3.20
225 226 4.039730 CCACATCCAAATCGTATCCTCTCT 59.960 45.833 0.00 0.00 0.00 3.10
226 227 4.202264 ACCACATCCAAATCGTATCCTCTC 60.202 45.833 0.00 0.00 0.00 3.20
227 228 3.711704 ACCACATCCAAATCGTATCCTCT 59.288 43.478 0.00 0.00 0.00 3.69
228 229 4.073293 ACCACATCCAAATCGTATCCTC 57.927 45.455 0.00 0.00 0.00 3.71
229 230 5.513094 CCATACCACATCCAAATCGTATCCT 60.513 44.000 0.00 0.00 0.00 3.24
230 231 4.695455 CCATACCACATCCAAATCGTATCC 59.305 45.833 0.00 0.00 0.00 2.59
231 232 5.179368 CACCATACCACATCCAAATCGTATC 59.821 44.000 0.00 0.00 0.00 2.24
232 233 5.063204 CACCATACCACATCCAAATCGTAT 58.937 41.667 0.00 0.00 0.00 3.06
233 234 4.080807 ACACCATACCACATCCAAATCGTA 60.081 41.667 0.00 0.00 0.00 3.43
234 235 3.278574 CACCATACCACATCCAAATCGT 58.721 45.455 0.00 0.00 0.00 3.73
235 236 3.065233 CACACCATACCACATCCAAATCG 59.935 47.826 0.00 0.00 0.00 3.34
236 237 3.381272 CCACACCATACCACATCCAAATC 59.619 47.826 0.00 0.00 0.00 2.17
237 238 3.364549 CCACACCATACCACATCCAAAT 58.635 45.455 0.00 0.00 0.00 2.32
238 239 2.556336 CCCACACCATACCACATCCAAA 60.556 50.000 0.00 0.00 0.00 3.28
239 240 1.005332 CCCACACCATACCACATCCAA 59.995 52.381 0.00 0.00 0.00 3.53
240 241 0.623194 CCCACACCATACCACATCCA 59.377 55.000 0.00 0.00 0.00 3.41
241 242 0.106719 CCCCACACCATACCACATCC 60.107 60.000 0.00 0.00 0.00 3.51
242 243 0.916086 TCCCCACACCATACCACATC 59.084 55.000 0.00 0.00 0.00 3.06
243 244 1.377690 TTCCCCACACCATACCACAT 58.622 50.000 0.00 0.00 0.00 3.21
244 245 1.149986 TTTCCCCACACCATACCACA 58.850 50.000 0.00 0.00 0.00 4.17
245 246 2.167662 CTTTTCCCCACACCATACCAC 58.832 52.381 0.00 0.00 0.00 4.16
246 247 2.066592 TCTTTTCCCCACACCATACCA 58.933 47.619 0.00 0.00 0.00 3.25
247 248 2.891191 TCTTTTCCCCACACCATACC 57.109 50.000 0.00 0.00 0.00 2.73
248 249 5.751586 TCTTATCTTTTCCCCACACCATAC 58.248 41.667 0.00 0.00 0.00 2.39
249 250 6.590656 ATCTTATCTTTTCCCCACACCATA 57.409 37.500 0.00 0.00 0.00 2.74
250 251 4.946160 TCTTATCTTTTCCCCACACCAT 57.054 40.909 0.00 0.00 0.00 3.55
251 252 4.946160 ATCTTATCTTTTCCCCACACCA 57.054 40.909 0.00 0.00 0.00 4.17
252 253 5.828328 CCTTATCTTATCTTTTCCCCACACC 59.172 44.000 0.00 0.00 0.00 4.16
253 254 5.828328 CCCTTATCTTATCTTTTCCCCACAC 59.172 44.000 0.00 0.00 0.00 3.82
254 255 5.734140 TCCCTTATCTTATCTTTTCCCCACA 59.266 40.000 0.00 0.00 0.00 4.17
255 256 6.062749 GTCCCTTATCTTATCTTTTCCCCAC 58.937 44.000 0.00 0.00 0.00 4.61
256 257 5.163237 CGTCCCTTATCTTATCTTTTCCCCA 60.163 44.000 0.00 0.00 0.00 4.96
257 258 5.163227 ACGTCCCTTATCTTATCTTTTCCCC 60.163 44.000 0.00 0.00 0.00 4.81
258 259 5.926663 ACGTCCCTTATCTTATCTTTTCCC 58.073 41.667 0.00 0.00 0.00 3.97
259 260 5.690857 CGACGTCCCTTATCTTATCTTTTCC 59.309 44.000 10.58 0.00 0.00 3.13
260 261 6.198591 CACGACGTCCCTTATCTTATCTTTTC 59.801 42.308 10.58 0.00 0.00 2.29
261 262 6.040878 CACGACGTCCCTTATCTTATCTTTT 58.959 40.000 10.58 0.00 0.00 2.27
262 263 5.589192 CACGACGTCCCTTATCTTATCTTT 58.411 41.667 10.58 0.00 0.00 2.52
263 264 4.499357 GCACGACGTCCCTTATCTTATCTT 60.499 45.833 10.58 0.00 0.00 2.40
264 265 3.004524 GCACGACGTCCCTTATCTTATCT 59.995 47.826 10.58 0.00 0.00 1.98
265 266 3.306818 GCACGACGTCCCTTATCTTATC 58.693 50.000 10.58 0.00 0.00 1.75
266 267 2.287427 CGCACGACGTCCCTTATCTTAT 60.287 50.000 10.58 0.00 36.87 1.73
267 268 1.064505 CGCACGACGTCCCTTATCTTA 59.935 52.381 10.58 0.00 36.87 2.10
268 269 0.179145 CGCACGACGTCCCTTATCTT 60.179 55.000 10.58 0.00 36.87 2.40
269 270 1.432251 CGCACGACGTCCCTTATCT 59.568 57.895 10.58 0.00 36.87 1.98
270 271 1.588139 CCGCACGACGTCCCTTATC 60.588 63.158 10.58 0.00 41.42 1.75
271 272 2.345760 ACCGCACGACGTCCCTTAT 61.346 57.895 10.58 0.00 41.42 1.73
272 273 2.985282 ACCGCACGACGTCCCTTA 60.985 61.111 10.58 0.00 41.42 2.69
273 274 4.657824 CACCGCACGACGTCCCTT 62.658 66.667 10.58 0.00 41.42 3.95
287 288 3.665675 CTCTAGTGGCCCACGCACC 62.666 68.421 8.52 0.00 39.64 5.01
288 289 2.125512 CTCTAGTGGCCCACGCAC 60.126 66.667 8.52 0.00 39.64 5.34
289 290 4.082523 GCTCTAGTGGCCCACGCA 62.083 66.667 8.52 0.00 39.64 5.24
291 292 3.449227 TCGCTCTAGTGGCCCACG 61.449 66.667 8.52 0.00 39.64 4.94
292 293 2.184579 GTCGCTCTAGTGGCCCAC 59.815 66.667 5.50 5.50 34.10 4.61
293 294 3.075005 GGTCGCTCTAGTGGCCCA 61.075 66.667 0.00 0.00 44.13 5.36
294 295 4.208686 CGGTCGCTCTAGTGGCCC 62.209 72.222 8.53 0.00 46.99 5.80
295 296 4.208686 CCGGTCGCTCTAGTGGCC 62.209 72.222 4.03 4.03 46.25 5.36
296 297 4.874977 GCCGGTCGCTCTAGTGGC 62.875 72.222 1.90 0.00 35.04 5.01
305 306 0.179189 CTGAAATTTCAGCCGGTCGC 60.179 55.000 29.90 0.00 46.97 5.19
306 307 3.975992 CTGAAATTTCAGCCGGTCG 57.024 52.632 29.90 10.48 46.97 4.79
314 315 1.578926 CACGCCGGCTGAAATTTCA 59.421 52.632 26.68 19.45 35.57 2.69
315 316 1.801512 GCACGCCGGCTGAAATTTC 60.802 57.895 26.68 11.41 0.00 2.17
316 317 2.258286 GCACGCCGGCTGAAATTT 59.742 55.556 26.68 0.00 0.00 1.82
317 318 3.747976 GGCACGCCGGCTGAAATT 61.748 61.111 26.68 0.00 37.17 1.82
363 364 9.956720 CCTCCTTTATTCAATCACAATTGTATC 57.043 33.333 11.53 0.00 42.46 2.24
364 365 9.699410 TCCTCCTTTATTCAATCACAATTGTAT 57.301 29.630 11.53 2.58 42.46 2.29
365 366 9.177608 CTCCTCCTTTATTCAATCACAATTGTA 57.822 33.333 11.53 0.49 42.46 2.41
366 367 7.890127 TCTCCTCCTTTATTCAATCACAATTGT 59.110 33.333 4.92 4.92 42.46 2.71
367 368 8.284945 TCTCCTCCTTTATTCAATCACAATTG 57.715 34.615 3.24 3.24 43.10 2.32
368 369 8.910944 CATCTCCTCCTTTATTCAATCACAATT 58.089 33.333 0.00 0.00 0.00 2.32
369 370 8.277197 TCATCTCCTCCTTTATTCAATCACAAT 58.723 33.333 0.00 0.00 0.00 2.71
370 371 7.632861 TCATCTCCTCCTTTATTCAATCACAA 58.367 34.615 0.00 0.00 0.00 3.33
371 372 7.199167 TCATCTCCTCCTTTATTCAATCACA 57.801 36.000 0.00 0.00 0.00 3.58
372 373 8.688747 AATCATCTCCTCCTTTATTCAATCAC 57.311 34.615 0.00 0.00 0.00 3.06
373 374 9.128404 CAAATCATCTCCTCCTTTATTCAATCA 57.872 33.333 0.00 0.00 0.00 2.57
374 375 9.129532 ACAAATCATCTCCTCCTTTATTCAATC 57.870 33.333 0.00 0.00 0.00 2.67
375 376 9.129532 GACAAATCATCTCCTCCTTTATTCAAT 57.870 33.333 0.00 0.00 0.00 2.57
376 377 8.108999 TGACAAATCATCTCCTCCTTTATTCAA 58.891 33.333 0.00 0.00 0.00 2.69
377 378 7.632861 TGACAAATCATCTCCTCCTTTATTCA 58.367 34.615 0.00 0.00 0.00 2.57
378 379 8.511604 TTGACAAATCATCTCCTCCTTTATTC 57.488 34.615 0.00 0.00 33.85 1.75
379 380 8.884124 TTTGACAAATCATCTCCTCCTTTATT 57.116 30.769 0.00 0.00 33.85 1.40
380 381 8.884124 TTTTGACAAATCATCTCCTCCTTTAT 57.116 30.769 0.50 0.00 33.85 1.40
381 382 8.704849 TTTTTGACAAATCATCTCCTCCTTTA 57.295 30.769 0.50 0.00 33.85 1.85
382 383 7.601705 TTTTTGACAAATCATCTCCTCCTTT 57.398 32.000 0.50 0.00 33.85 3.11
404 405 2.286365 TCCGGCTGTCCAATCTTTTT 57.714 45.000 0.00 0.00 0.00 1.94
405 406 2.025887 AGATCCGGCTGTCCAATCTTTT 60.026 45.455 0.00 0.00 33.22 2.27
406 407 1.561542 AGATCCGGCTGTCCAATCTTT 59.438 47.619 0.00 0.00 33.22 2.52
407 408 1.207791 AGATCCGGCTGTCCAATCTT 58.792 50.000 0.00 0.00 33.22 2.40
413 414 0.386113 GTCACTAGATCCGGCTGTCC 59.614 60.000 0.00 0.00 0.00 4.02
427 428 0.974383 AAAAGATCGGTCGGGTCACT 59.026 50.000 0.00 0.00 0.00 3.41
428 429 1.730612 GAAAAAGATCGGTCGGGTCAC 59.269 52.381 0.00 0.00 0.00 3.67
448 449 2.603560 GTCGGACGGCTTATCTTTTGAG 59.396 50.000 0.00 0.00 0.00 3.02
983 2589 3.397649 ATCGTCGTCGTCGTCGTCG 62.398 63.158 20.39 20.39 45.27 5.12
984 2590 1.922220 CATCGTCGTCGTCGTCGTC 60.922 63.158 18.44 5.52 45.27 4.20
985 2591 2.095282 CATCGTCGTCGTCGTCGT 59.905 61.111 18.44 6.36 45.27 4.34
986 2592 1.922220 GTCATCGTCGTCGTCGTCG 60.922 63.158 14.18 14.18 46.06 5.12
1103 2709 2.432628 CCCAGGACTCGTCGTTGC 60.433 66.667 0.00 0.00 0.00 4.17
1179 2785 1.516423 GGTGGCGTAGAGGAAGGAC 59.484 63.158 0.00 0.00 0.00 3.85
1548 3154 2.203938 TCCAGGAGGACGCCCTTT 60.204 61.111 0.00 0.00 44.53 3.11
2046 3675 2.353579 GCAATGTACGGTATGGTTCACC 59.646 50.000 0.00 0.00 0.00 4.02
2069 3698 0.893270 CATTTGTCCGGGGTTGAGCA 60.893 55.000 0.00 0.00 0.00 4.26
2070 3699 0.893727 ACATTTGTCCGGGGTTGAGC 60.894 55.000 0.00 0.00 0.00 4.26
2071 3700 2.081462 GTACATTTGTCCGGGGTTGAG 58.919 52.381 0.00 0.00 0.00 3.02
2072 3701 1.700739 AGTACATTTGTCCGGGGTTGA 59.299 47.619 0.00 0.00 0.00 3.18
2073 3702 1.810151 CAGTACATTTGTCCGGGGTTG 59.190 52.381 0.00 0.00 0.00 3.77
2074 3703 1.700739 TCAGTACATTTGTCCGGGGTT 59.299 47.619 0.00 0.00 0.00 4.11
2076 3705 2.081462 GTTCAGTACATTTGTCCGGGG 58.919 52.381 0.00 0.00 0.00 5.73
2080 3709 6.619801 ACTTTCAGTTCAGTACATTTGTCC 57.380 37.500 0.00 0.00 0.00 4.02
2128 3757 3.567164 CCTGAGTAATGACCATTGCATCC 59.433 47.826 12.13 3.45 36.13 3.51
2231 3862 2.235016 GTGGAGGATAGAGACGAGCAT 58.765 52.381 0.00 0.00 0.00 3.79
2242 3873 6.620877 AGTTTCAGTACATTGTGGAGGATA 57.379 37.500 0.00 0.00 0.00 2.59
2380 4013 0.463833 GAGATACCAAGGGGCCAACG 60.464 60.000 4.39 0.00 37.90 4.10
2382 4015 1.377690 TTGAGATACCAAGGGGCCAA 58.622 50.000 4.39 0.00 37.90 4.52
2383 4016 1.607225 ATTGAGATACCAAGGGGCCA 58.393 50.000 4.39 0.00 37.90 5.36
2384 4017 5.717119 ATATATTGAGATACCAAGGGGCC 57.283 43.478 0.00 0.00 37.90 5.80
2413 4046 3.649073 TGACGTGTGACACTTATCAAGG 58.351 45.455 14.42 0.00 31.34 3.61
2415 4048 3.069016 ACCTGACGTGTGACACTTATCAA 59.931 43.478 14.42 0.37 31.34 2.57
2466 4215 2.472886 CGCATCACTAAACTTGCTGTCG 60.473 50.000 0.00 0.00 32.97 4.35
2484 4233 1.349688 ACTAAAGTTGTCATCCCCGCA 59.650 47.619 0.00 0.00 0.00 5.69
2509 4258 1.142474 GCACAAAAGTTGCCATGCTC 58.858 50.000 0.00 0.00 33.58 4.26
2516 4265 5.102313 AGTAAACTGAAGCACAAAAGTTGC 58.898 37.500 0.00 0.00 40.52 4.17
2531 4280 9.061610 CGGCAAGTTTATATCAAAAGTAAACTG 57.938 33.333 9.65 6.48 43.85 3.16
2538 4287 6.842163 ACAGACGGCAAGTTTATATCAAAAG 58.158 36.000 0.00 0.00 0.00 2.27
2545 4294 4.021807 TCAGTGACAGACGGCAAGTTTATA 60.022 41.667 0.00 0.00 0.00 0.98
2547 4296 2.101750 TCAGTGACAGACGGCAAGTTTA 59.898 45.455 0.00 0.00 0.00 2.01
2559 4308 3.508793 AGGATGGCAATTTTCAGTGACAG 59.491 43.478 0.00 0.00 40.04 3.51
2575 4324 0.321564 TTTCAGTCACGGCAGGATGG 60.322 55.000 0.00 0.00 35.86 3.51
2582 4331 0.527565 ATGGCAATTTCAGTCACGGC 59.472 50.000 0.00 0.00 0.00 5.68
2583 4332 1.202065 CGATGGCAATTTCAGTCACGG 60.202 52.381 0.00 0.00 0.00 4.94
2588 4337 3.980775 CGTTTTTCGATGGCAATTTCAGT 59.019 39.130 0.00 0.00 42.86 3.41
2603 4352 3.605461 GCACTTCGGACCTAACGTTTTTC 60.605 47.826 5.91 0.17 0.00 2.29
2609 4358 1.012486 GTGGCACTTCGGACCTAACG 61.012 60.000 11.13 0.00 0.00 3.18
2632 4381 1.337728 TGATAAGTGCCACACGTCAGG 60.338 52.381 0.00 0.00 39.64 3.86
2637 4386 3.938963 ACCTAAATGATAAGTGCCACACG 59.061 43.478 0.00 0.00 39.64 4.49
2638 4387 8.848474 ATATACCTAAATGATAAGTGCCACAC 57.152 34.615 0.00 0.00 34.10 3.82
2655 4404 9.661563 AAAACGACACATCTGAAAATATACCTA 57.338 29.630 0.00 0.00 0.00 3.08
2697 4446 4.104102 TCCTGTATGGAGACTTTGGTGTTT 59.896 41.667 0.00 0.00 40.56 2.83
2767 4677 3.056107 TGTTTACCACCTACTAGCTGCTG 60.056 47.826 13.43 4.99 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.