Multiple sequence alignment - TraesCS3D01G284300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G284300 chr3D 100.000 2762 0 0 1 2762 393549133 393551894 0.000000e+00 5101.0
1 TraesCS3D01G284300 chr3B 91.594 2177 108 24 1 2141 513488578 513490715 0.000000e+00 2937.0
2 TraesCS3D01G284300 chr3B 78.571 224 34 11 2312 2530 41349127 41348913 4.800000e-28 135.0
3 TraesCS3D01G284300 chr3A 89.029 1112 76 20 322 1406 513524657 513525749 0.000000e+00 1336.0
4 TraesCS3D01G284300 chr3A 89.986 729 35 19 1445 2141 513525745 513526467 0.000000e+00 907.0
5 TraesCS3D01G284300 chr3A 92.208 77 5 1 2684 2759 513526458 513526534 1.050000e-19 108.0
6 TraesCS3D01G284300 chr1D 78.526 475 63 25 2233 2684 475916981 475917439 2.710000e-70 276.0
7 TraesCS3D01G284300 chr1D 82.308 130 19 2 2235 2360 374228342 374228213 2.910000e-20 110.0
8 TraesCS3D01G284300 chr7A 76.856 458 75 20 2236 2683 668018501 668018937 2.140000e-56 230.0
9 TraesCS3D01G284300 chr1B 76.562 384 51 30 2240 2602 525904355 525903990 1.020000e-39 174.0
10 TraesCS3D01G284300 chr1B 75.000 412 62 21 2236 2629 552311575 552311187 4.760000e-33 152.0
11 TraesCS3D01G284300 chr1A 78.201 289 51 9 2319 2600 463454728 463455011 1.020000e-39 174.0
12 TraesCS3D01G284300 chr5A 75.610 369 68 17 2241 2600 667069204 667069559 2.200000e-36 163.0
13 TraesCS3D01G284300 chr5A 94.444 36 2 0 2199 2234 22714091 22714056 3.840000e-04 56.5
14 TraesCS3D01G284300 chr2D 81.111 180 21 11 2240 2410 512183397 512183222 6.210000e-27 132.0
15 TraesCS3D01G284300 chr2D 100.000 28 0 0 2131 2158 8166566 8166539 5.000000e-03 52.8
16 TraesCS3D01G284300 chr4B 82.308 130 19 2 2235 2360 501925659 501925788 2.910000e-20 110.0
17 TraesCS3D01G284300 chr4B 79.231 130 14 5 2235 2360 113250369 113250489 8.200000e-11 78.7
18 TraesCS3D01G284300 chr4B 100.000 28 0 0 2131 2158 95869556 95869583 5.000000e-03 52.8
19 TraesCS3D01G284300 chr4D 86.598 97 13 0 2138 2234 215469205 215469109 1.050000e-19 108.0
20 TraesCS3D01G284300 chr2B 85.294 102 13 2 2134 2234 585753399 585753499 1.350000e-18 104.0
21 TraesCS3D01G284300 chr2B 85.149 101 15 0 2134 2234 672825158 672825058 1.350000e-18 104.0
22 TraesCS3D01G284300 chr5D 82.353 119 19 2 2235 2352 223782403 223782520 4.870000e-18 102.0
23 TraesCS3D01G284300 chr5D 88.889 81 8 1 2244 2323 435579321 435579241 6.300000e-17 99.0
24 TraesCS3D01G284300 chr5D 100.000 28 0 0 2131 2158 538528960 538528987 5.000000e-03 52.8
25 TraesCS3D01G284300 chrUn 80.714 140 13 5 2236 2361 12884352 12884491 2.260000e-16 97.1
26 TraesCS3D01G284300 chrUn 94.444 36 1 1 2200 2235 136329211 136329245 1.000000e-03 54.7
27 TraesCS3D01G284300 chr7D 81.731 104 13 5 2134 2234 135974779 135974679 6.340000e-12 82.4
28 TraesCS3D01G284300 chr4A 92.157 51 4 0 2189 2239 513311243 513311193 3.820000e-09 73.1
29 TraesCS3D01G284300 chr4A 100.000 29 0 0 2206 2234 684902968 684902940 1.000000e-03 54.7
30 TraesCS3D01G284300 chr4A 100.000 28 0 0 2130 2157 738925571 738925544 5.000000e-03 52.8
31 TraesCS3D01G284300 chr6B 100.000 28 0 0 2137 2164 667946068 667946095 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G284300 chr3D 393549133 393551894 2761 False 5101.000000 5101 100.000000 1 2762 1 chr3D.!!$F1 2761
1 TraesCS3D01G284300 chr3B 513488578 513490715 2137 False 2937.000000 2937 91.594000 1 2141 1 chr3B.!!$F1 2140
2 TraesCS3D01G284300 chr3A 513524657 513526534 1877 False 783.666667 1336 90.407667 322 2759 3 chr3A.!!$F1 2437

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 379 0.249911 GTGGCATCACCGACTATCCC 60.250 60.0 0.0 0.0 43.94 3.85 F
795 807 0.596083 CGAGACGCCCTCTGCATTAG 60.596 60.0 0.0 0.0 41.33 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1236 1273 0.034186 TGTAGCCCCTGGATTTGCAG 60.034 55.0 0.00 0.00 0.0 4.41 R
2590 2660 0.033699 ATGGGCAGCCCTTCTTCTTC 60.034 55.0 31.51 1.45 45.7 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.531657 CCCATGAGCGAATTTGCCAA 59.468 50.000 14.28 3.21 34.65 4.52
75 76 8.582891 ATTTAGGGTATATGAGAAAGGAGGTT 57.417 34.615 0.00 0.00 0.00 3.50
79 80 5.221742 GGGTATATGAGAAAGGAGGTTGAGG 60.222 48.000 0.00 0.00 0.00 3.86
86 87 1.831652 AAGGAGGTTGAGGGAGTGCG 61.832 60.000 0.00 0.00 0.00 5.34
93 94 2.680352 GAGGGAGTGCGGGACTGA 60.680 66.667 6.97 0.00 33.83 3.41
143 144 4.993705 TCTTACTCAATCCACCCAAAGT 57.006 40.909 0.00 0.00 0.00 2.66
154 155 3.010808 TCCACCCAAAGTGTTATAAGGGG 59.989 47.826 9.40 0.00 45.74 4.79
161 162 2.995283 AGTGTTATAAGGGGCGAAACC 58.005 47.619 0.00 0.00 37.93 3.27
181 182 7.540474 AAACCTATCTGACTTGACTAGTTCA 57.460 36.000 0.00 0.00 37.17 3.18
182 183 6.518208 ACCTATCTGACTTGACTAGTTCAC 57.482 41.667 0.00 0.00 37.17 3.18
197 198 2.093128 AGTTCACGGACTGAGGTTTGTT 60.093 45.455 0.00 0.00 0.00 2.83
231 232 6.544564 TGTTGAGGGACGATTTCTTAACTTTT 59.455 34.615 0.00 0.00 31.18 2.27
232 233 6.554334 TGAGGGACGATTTCTTAACTTTTG 57.446 37.500 0.00 0.00 0.00 2.44
290 291 7.387948 ACACTTACTCCAGTTGTGATGTTATTC 59.612 37.037 15.18 0.00 36.17 1.75
373 374 1.529152 TACGTGTGGCATCACCGACT 61.529 55.000 0.00 0.01 43.94 4.18
378 379 0.249911 GTGGCATCACCGACTATCCC 60.250 60.000 0.00 0.00 43.94 3.85
474 479 3.133721 GGCATGTTACTCTGTCCATCTCT 59.866 47.826 0.00 0.00 0.00 3.10
492 497 3.012518 CTCTGGCATCCTTTGGTTACTG 58.987 50.000 0.00 0.00 0.00 2.74
528 537 2.095364 CGAGATTAACCTATCCGACGGG 60.095 54.545 15.25 0.00 0.00 5.28
726 735 4.159135 CCAAGTGATCAATCCCAAGAAAGG 59.841 45.833 0.00 0.00 0.00 3.11
795 807 0.596083 CGAGACGCCCTCTGCATTAG 60.596 60.000 0.00 0.00 41.33 1.73
803 815 2.928334 CCCTCTGCATTAGCTGTGAAT 58.072 47.619 0.00 0.00 42.74 2.57
1029 1045 4.082523 GCAGCTGTAGTCCGGGCA 62.083 66.667 16.64 0.00 0.00 5.36
1035 1051 1.304630 TGTAGTCCGGGCAGCACTA 60.305 57.895 9.71 1.68 0.00 2.74
1209 1246 3.343421 GCGCCACCTTTCGTCGTT 61.343 61.111 0.00 0.00 0.00 3.85
1230 1267 1.257750 TGCAGGGCGTGATCTACTGT 61.258 55.000 12.03 0.00 0.00 3.55
1293 1330 0.744414 CACCGATCCAAGGTTCGCAT 60.744 55.000 12.81 2.37 40.59 4.73
1299 1336 2.573340 CAAGGTTCGCATTGCCCC 59.427 61.111 2.41 0.85 32.00 5.80
1302 1339 0.258774 AAGGTTCGCATTGCCCCTAT 59.741 50.000 2.41 0.00 0.00 2.57
1305 1342 2.910319 AGGTTCGCATTGCCCCTATATA 59.090 45.455 2.41 0.00 0.00 0.86
1306 1343 3.523564 AGGTTCGCATTGCCCCTATATAT 59.476 43.478 2.41 0.00 0.00 0.86
1307 1344 4.719773 AGGTTCGCATTGCCCCTATATATA 59.280 41.667 2.41 0.00 0.00 0.86
1497 1534 0.179067 GGAAGGTGGTGAACGTGACA 60.179 55.000 0.00 0.00 0.00 3.58
1578 1615 2.784596 GCGCGCAACTGCAAGATA 59.215 55.556 29.10 0.00 42.21 1.98
1668 1705 0.167470 CGCTCGTCAAAGAGACCGTA 59.833 55.000 0.00 0.00 44.66 4.02
1671 1708 2.351544 GCTCGTCAAAGAGACCGTAACT 60.352 50.000 0.00 0.00 44.66 2.24
1789 1826 1.753141 GCCTCGATCCACCTGGTACTA 60.753 57.143 0.00 0.00 36.34 1.82
1819 1879 2.438021 TCAACTAGTCACCTTGGCAGTT 59.562 45.455 0.00 0.00 0.00 3.16
1840 1900 1.009675 GCACTTGCAGTGGTTCGTG 60.010 57.895 15.16 4.91 46.01 4.35
1847 1907 0.450184 GCAGTGGTTCGTGTTTGTGT 59.550 50.000 0.00 0.00 0.00 3.72
1853 1918 5.006844 CAGTGGTTCGTGTTTGTGTATTGTA 59.993 40.000 0.00 0.00 0.00 2.41
1870 1935 1.616865 TGTACGTGTTCCTAGCAGCTT 59.383 47.619 0.00 0.00 0.00 3.74
1871 1936 2.821378 TGTACGTGTTCCTAGCAGCTTA 59.179 45.455 0.00 0.00 0.00 3.09
1872 1937 2.656560 ACGTGTTCCTAGCAGCTTAG 57.343 50.000 0.00 0.00 0.00 2.18
1873 1938 2.168496 ACGTGTTCCTAGCAGCTTAGA 58.832 47.619 0.00 0.00 0.00 2.10
1874 1939 2.761208 ACGTGTTCCTAGCAGCTTAGAT 59.239 45.455 0.00 0.00 0.00 1.98
1875 1940 3.181485 ACGTGTTCCTAGCAGCTTAGATC 60.181 47.826 0.00 0.00 0.00 2.75
1876 1941 3.723260 GTGTTCCTAGCAGCTTAGATCC 58.277 50.000 0.00 0.00 0.00 3.36
1890 1955 4.552184 GCTTAGATCCGCCAATTTACGTTC 60.552 45.833 0.00 0.00 0.00 3.95
1904 1969 8.557029 CCAATTTACGTTCAGTTCTTCTAGTTT 58.443 33.333 0.00 0.00 0.00 2.66
1907 1972 8.483307 TTTACGTTCAGTTCTTCTAGTTTGTT 57.517 30.769 0.00 0.00 0.00 2.83
1921 1987 1.999024 GTTTGTTGGTTGGTGCAGTTG 59.001 47.619 0.00 0.00 0.00 3.16
1959 2025 1.882623 CTTGAGTTTTCAGTGGCCTCC 59.117 52.381 3.32 0.00 34.15 4.30
1967 2033 4.974438 AGTGGCCTCCGTTCCCCA 62.974 66.667 3.32 0.00 0.00 4.96
2019 2087 8.711457 GTGCATTATTTTAAGCTGTTTGACATT 58.289 29.630 0.00 0.00 0.00 2.71
2034 2102 1.127951 GACATTTACGGCTGTCGGTTG 59.872 52.381 0.00 0.00 44.45 3.77
2053 2122 0.179108 GCCACTACACCGAGATCCAC 60.179 60.000 0.00 0.00 0.00 4.02
2082 2151 2.839486 TCGAGCTCCAATTCACACTT 57.161 45.000 8.47 0.00 0.00 3.16
2126 2196 1.407712 GGTAATAGCCACCCTGCGAAA 60.408 52.381 0.00 0.00 36.02 3.46
2127 2197 1.940613 GTAATAGCCACCCTGCGAAAG 59.059 52.381 0.00 0.00 36.02 2.62
2142 2212 6.338937 CCTGCGAAAGGGTATATTATACTCC 58.661 44.000 9.64 10.34 43.15 3.85
2143 2213 6.290294 TGCGAAAGGGTATATTATACTCCC 57.710 41.667 9.64 5.85 38.50 4.30
2145 2215 6.154021 TGCGAAAGGGTATATTATACTCCCTC 59.846 42.308 13.67 6.40 46.54 4.30
2146 2216 6.406737 GCGAAAGGGTATATTATACTCCCTCC 60.407 46.154 13.67 4.56 46.54 4.30
2147 2217 6.183360 CGAAAGGGTATATTATACTCCCTCCG 60.183 46.154 13.67 14.80 46.54 4.63
2148 2218 5.810456 AGGGTATATTATACTCCCTCCGT 57.190 43.478 9.64 0.00 44.32 4.69
2149 2219 5.764432 AGGGTATATTATACTCCCTCCGTC 58.236 45.833 9.64 0.00 44.32 4.79
2150 2220 5.495436 AGGGTATATTATACTCCCTCCGTCT 59.505 44.000 9.64 0.00 44.32 4.18
2151 2221 5.827267 GGGTATATTATACTCCCTCCGTCTC 59.173 48.000 12.41 0.00 35.63 3.36
2152 2222 6.421485 GGTATATTATACTCCCTCCGTCTCA 58.579 44.000 12.41 0.00 0.00 3.27
2153 2223 7.061688 GGTATATTATACTCCCTCCGTCTCAT 58.938 42.308 12.41 0.00 0.00 2.90
2154 2224 8.216423 GGTATATTATACTCCCTCCGTCTCATA 58.784 40.741 12.41 0.00 0.00 2.15
2155 2225 9.624373 GTATATTATACTCCCTCCGTCTCATAA 57.376 37.037 6.59 0.00 0.00 1.90
2159 2229 8.577048 TTATACTCCCTCCGTCTCATAATAAG 57.423 38.462 0.00 0.00 0.00 1.73
2160 2230 4.805744 ACTCCCTCCGTCTCATAATAAGT 58.194 43.478 0.00 0.00 0.00 2.24
2161 2231 5.950023 ACTCCCTCCGTCTCATAATAAGTA 58.050 41.667 0.00 0.00 0.00 2.24
2162 2232 6.553857 ACTCCCTCCGTCTCATAATAAGTAT 58.446 40.000 0.00 0.00 0.00 2.12
2163 2233 6.660094 ACTCCCTCCGTCTCATAATAAGTATC 59.340 42.308 0.00 0.00 0.00 2.24
2164 2234 6.791371 TCCCTCCGTCTCATAATAAGTATCT 58.209 40.000 0.00 0.00 0.00 1.98
2165 2235 6.885376 TCCCTCCGTCTCATAATAAGTATCTC 59.115 42.308 0.00 0.00 0.00 2.75
2166 2236 6.659668 CCCTCCGTCTCATAATAAGTATCTCA 59.340 42.308 0.00 0.00 0.00 3.27
2167 2237 7.176865 CCCTCCGTCTCATAATAAGTATCTCAA 59.823 40.741 0.00 0.00 0.00 3.02
2168 2238 8.024285 CCTCCGTCTCATAATAAGTATCTCAAC 58.976 40.741 0.00 0.00 0.00 3.18
2169 2239 8.693120 TCCGTCTCATAATAAGTATCTCAACT 57.307 34.615 0.00 0.00 0.00 3.16
2170 2240 9.788889 TCCGTCTCATAATAAGTATCTCAACTA 57.211 33.333 0.00 0.00 0.00 2.24
2184 2254 8.915036 AGTATCTCAACTATGTACTAGTTTGGG 58.085 37.037 0.00 0.00 46.35 4.12
2185 2255 7.735326 ATCTCAACTATGTACTAGTTTGGGT 57.265 36.000 0.00 0.00 46.35 4.51
2186 2256 8.834004 ATCTCAACTATGTACTAGTTTGGGTA 57.166 34.615 0.00 0.00 46.35 3.69
2187 2257 8.834004 TCTCAACTATGTACTAGTTTGGGTAT 57.166 34.615 0.00 0.00 46.35 2.73
2188 2258 9.925545 TCTCAACTATGTACTAGTTTGGGTATA 57.074 33.333 0.00 0.00 46.35 1.47
2225 2295 7.599171 AGTTTAAGACATTTATTTTGGGACGG 58.401 34.615 0.00 0.00 0.00 4.79
2226 2296 7.449086 AGTTTAAGACATTTATTTTGGGACGGA 59.551 33.333 0.00 0.00 0.00 4.69
2227 2297 7.948034 TTAAGACATTTATTTTGGGACGGAT 57.052 32.000 0.00 0.00 0.00 4.18
2228 2298 5.835113 AGACATTTATTTTGGGACGGATG 57.165 39.130 0.00 0.00 0.00 3.51
2229 2299 4.644685 AGACATTTATTTTGGGACGGATGG 59.355 41.667 0.00 0.00 0.00 3.51
2230 2300 4.605183 ACATTTATTTTGGGACGGATGGA 58.395 39.130 0.00 0.00 0.00 3.41
2231 2301 4.644685 ACATTTATTTTGGGACGGATGGAG 59.355 41.667 0.00 0.00 0.00 3.86
2232 2302 4.310022 TTTATTTTGGGACGGATGGAGT 57.690 40.909 0.00 0.00 0.00 3.85
2233 2303 5.438698 TTTATTTTGGGACGGATGGAGTA 57.561 39.130 0.00 0.00 0.00 2.59
2234 2304 2.773993 TTTTGGGACGGATGGAGTAC 57.226 50.000 0.00 0.00 0.00 2.73
2235 2305 0.906775 TTTGGGACGGATGGAGTACC 59.093 55.000 0.00 0.00 42.94 3.34
2237 2307 0.974010 TGGGACGGATGGAGTACCAC 60.974 60.000 0.00 0.00 46.98 4.16
2238 2308 3.645511 TGGGACGGATGGAGTACCACA 62.646 57.143 0.00 0.00 46.98 4.17
2239 2309 4.898643 TGGGACGGATGGAGTACCACAT 62.899 54.545 0.00 0.00 46.98 3.21
2241 2311 6.962108 TGGGACGGATGGAGTACCACATTA 62.962 50.000 0.00 0.00 46.98 1.90
2252 2322 7.681679 TGGAGTACCACATTAACTAAATGACA 58.318 34.615 4.82 0.00 46.58 3.58
2253 2323 7.822334 TGGAGTACCACATTAACTAAATGACAG 59.178 37.037 4.82 0.00 46.58 3.51
2254 2324 7.822822 GGAGTACCACATTAACTAAATGACAGT 59.177 37.037 4.82 2.28 46.58 3.55
2255 2325 8.773404 AGTACCACATTAACTAAATGACAGTC 57.227 34.615 4.82 0.00 46.81 3.51
2256 2326 6.721571 ACCACATTAACTAAATGACAGTCG 57.278 37.500 4.82 0.00 46.81 4.18
2257 2327 6.460781 ACCACATTAACTAAATGACAGTCGA 58.539 36.000 4.82 0.00 46.81 4.20
2258 2328 6.367969 ACCACATTAACTAAATGACAGTCGAC 59.632 38.462 7.70 7.70 46.81 4.20
2259 2329 6.590292 CCACATTAACTAAATGACAGTCGACT 59.410 38.462 13.58 13.58 46.81 4.18
2260 2330 7.411912 CCACATTAACTAAATGACAGTCGACTG 60.412 40.741 37.50 37.50 46.81 3.51
2261 2331 7.328493 CACATTAACTAAATGACAGTCGACTGA 59.672 37.037 43.55 27.43 46.81 3.41
2262 2332 7.870954 ACATTAACTAAATGACAGTCGACTGAA 59.129 33.333 43.55 32.02 46.81 3.02
2263 2333 8.873830 CATTAACTAAATGACAGTCGACTGAAT 58.126 33.333 43.55 32.60 46.81 2.57
2264 2334 8.827177 TTAACTAAATGACAGTCGACTGAATT 57.173 30.769 43.55 35.20 46.59 2.17
2265 2335 7.730364 AACTAAATGACAGTCGACTGAATTT 57.270 32.000 43.55 39.23 46.59 1.82
2266 2336 7.730364 ACTAAATGACAGTCGACTGAATTTT 57.270 32.000 38.01 33.48 46.59 1.82
2267 2337 8.827177 ACTAAATGACAGTCGACTGAATTTTA 57.173 30.769 38.01 33.09 46.59 1.52
2268 2338 9.268268 ACTAAATGACAGTCGACTGAATTTTAA 57.732 29.630 38.01 29.13 46.59 1.52
2271 2341 9.965824 AAATGACAGTCGACTGAATTTTAAATT 57.034 25.926 43.55 26.37 46.59 1.82
2272 2342 8.955061 ATGACAGTCGACTGAATTTTAAATTG 57.045 30.769 43.55 19.59 46.59 2.32
2273 2343 7.359595 TGACAGTCGACTGAATTTTAAATTGG 58.640 34.615 43.55 18.44 46.59 3.16
2274 2344 6.677913 ACAGTCGACTGAATTTTAAATTGGG 58.322 36.000 43.55 17.83 46.59 4.12
2275 2345 6.092748 CAGTCGACTGAATTTTAAATTGGGG 58.907 40.000 36.73 6.46 46.59 4.96
2276 2346 4.862574 GTCGACTGAATTTTAAATTGGGGC 59.137 41.667 8.70 1.94 0.00 5.80
2277 2347 4.081917 TCGACTGAATTTTAAATTGGGGCC 60.082 41.667 7.72 0.00 0.00 5.80
2278 2348 4.322349 CGACTGAATTTTAAATTGGGGCCA 60.322 41.667 7.72 0.00 0.00 5.36
2279 2349 5.164620 ACTGAATTTTAAATTGGGGCCAG 57.835 39.130 7.72 10.26 0.00 4.85
2280 2350 4.597075 ACTGAATTTTAAATTGGGGCCAGT 59.403 37.500 7.72 10.83 0.00 4.00
2281 2351 5.159273 TGAATTTTAAATTGGGGCCAGTC 57.841 39.130 7.72 0.00 0.00 3.51
2282 2352 3.885724 ATTTTAAATTGGGGCCAGTCG 57.114 42.857 4.39 0.00 0.00 4.18
2283 2353 2.588464 TTTAAATTGGGGCCAGTCGA 57.412 45.000 4.39 0.00 0.00 4.20
2284 2354 2.818751 TTAAATTGGGGCCAGTCGAT 57.181 45.000 4.39 0.00 0.00 3.59
2285 2355 2.818751 TAAATTGGGGCCAGTCGATT 57.181 45.000 4.39 2.24 0.00 3.34
2286 2356 1.937191 AAATTGGGGCCAGTCGATTT 58.063 45.000 4.39 8.58 0.00 2.17
2287 2357 1.937191 AATTGGGGCCAGTCGATTTT 58.063 45.000 4.39 0.00 0.00 1.82
2288 2358 1.185315 ATTGGGGCCAGTCGATTTTG 58.815 50.000 4.39 0.00 0.00 2.44
2289 2359 0.111446 TTGGGGCCAGTCGATTTTGA 59.889 50.000 4.39 0.00 0.00 2.69
2290 2360 0.322456 TGGGGCCAGTCGATTTTGAG 60.322 55.000 4.39 0.00 0.00 3.02
2291 2361 0.035439 GGGGCCAGTCGATTTTGAGA 60.035 55.000 4.39 0.00 0.00 3.27
2292 2362 1.373570 GGGCCAGTCGATTTTGAGAG 58.626 55.000 4.39 0.00 0.00 3.20
2293 2363 1.339151 GGGCCAGTCGATTTTGAGAGT 60.339 52.381 4.39 0.00 0.00 3.24
2294 2364 2.427506 GGCCAGTCGATTTTGAGAGTT 58.572 47.619 0.00 0.00 0.00 3.01
2295 2365 2.416893 GGCCAGTCGATTTTGAGAGTTC 59.583 50.000 0.00 0.00 0.00 3.01
2296 2366 3.067106 GCCAGTCGATTTTGAGAGTTCA 58.933 45.455 0.00 0.00 0.00 3.18
2297 2367 3.120511 GCCAGTCGATTTTGAGAGTTCAC 60.121 47.826 0.00 0.00 31.71 3.18
2298 2368 3.433615 CCAGTCGATTTTGAGAGTTCACC 59.566 47.826 0.00 0.00 31.71 4.02
2299 2369 3.121944 CAGTCGATTTTGAGAGTTCACCG 59.878 47.826 0.00 0.00 31.71 4.94
2300 2370 2.412089 GTCGATTTTGAGAGTTCACCGG 59.588 50.000 0.00 0.00 31.71 5.28
2301 2371 2.297880 TCGATTTTGAGAGTTCACCGGA 59.702 45.455 9.46 0.00 31.71 5.14
2302 2372 2.668457 CGATTTTGAGAGTTCACCGGAG 59.332 50.000 9.46 0.00 31.71 4.63
2303 2373 3.665190 GATTTTGAGAGTTCACCGGAGT 58.335 45.455 9.46 0.00 31.71 3.85
2304 2374 2.526304 TTTGAGAGTTCACCGGAGTG 57.474 50.000 9.46 0.00 46.00 3.51
2325 2395 3.878667 CGGAGGGATGGAAGGGGC 61.879 72.222 0.00 0.00 0.00 5.80
2326 2396 2.368878 GGAGGGATGGAAGGGGCT 60.369 66.667 0.00 0.00 0.00 5.19
2327 2397 2.456443 GGAGGGATGGAAGGGGCTC 61.456 68.421 0.00 0.00 0.00 4.70
2328 2398 2.770048 AGGGATGGAAGGGGCTCG 60.770 66.667 0.00 0.00 0.00 5.03
2329 2399 4.570874 GGGATGGAAGGGGCTCGC 62.571 72.222 0.00 0.00 0.00 5.03
2330 2400 4.570874 GGATGGAAGGGGCTCGCC 62.571 72.222 0.00 0.00 0.00 5.54
2331 2401 4.918201 GATGGAAGGGGCTCGCCG 62.918 72.222 1.24 0.00 36.85 6.46
2356 2426 4.828072 GGCTACCCCATCTATCTTAAGG 57.172 50.000 1.85 0.00 0.00 2.69
2357 2427 4.168883 GGCTACCCCATCTATCTTAAGGT 58.831 47.826 1.85 0.00 0.00 3.50
2358 2428 4.597940 GGCTACCCCATCTATCTTAAGGTT 59.402 45.833 1.85 0.00 0.00 3.50
2359 2429 5.073280 GGCTACCCCATCTATCTTAAGGTTT 59.927 44.000 1.85 0.00 0.00 3.27
2360 2430 6.271624 GGCTACCCCATCTATCTTAAGGTTTA 59.728 42.308 1.85 0.00 0.00 2.01
2361 2431 7.202158 GGCTACCCCATCTATCTTAAGGTTTAA 60.202 40.741 1.85 0.00 0.00 1.52
2362 2432 7.878644 GCTACCCCATCTATCTTAAGGTTTAAG 59.121 40.741 1.85 2.85 0.00 1.85
2363 2433 7.150447 ACCCCATCTATCTTAAGGTTTAAGG 57.850 40.000 1.85 0.00 0.00 2.69
2364 2434 6.681541 ACCCCATCTATCTTAAGGTTTAAGGT 59.318 38.462 1.85 4.59 0.00 3.50
2365 2435 7.853003 ACCCCATCTATCTTAAGGTTTAAGGTA 59.147 37.037 1.85 5.40 0.00 3.08
2366 2436 8.720537 CCCCATCTATCTTAAGGTTTAAGGTAA 58.279 37.037 1.85 0.11 0.00 2.85
2367 2437 9.780186 CCCATCTATCTTAAGGTTTAAGGTAAG 57.220 37.037 1.85 4.87 0.00 2.34
2373 2443 8.682297 ATCTTAAGGTTTAAGGTAAGAGAGGT 57.318 34.615 1.85 0.00 36.35 3.85
2374 2444 7.904205 TCTTAAGGTTTAAGGTAAGAGAGGTG 58.096 38.462 1.85 0.00 30.88 4.00
2375 2445 7.731688 TCTTAAGGTTTAAGGTAAGAGAGGTGA 59.268 37.037 1.85 0.00 30.88 4.02
2376 2446 6.954352 AAGGTTTAAGGTAAGAGAGGTGAT 57.046 37.500 0.00 0.00 0.00 3.06
2377 2447 6.301169 AGGTTTAAGGTAAGAGAGGTGATG 57.699 41.667 0.00 0.00 0.00 3.07
2378 2448 5.189934 AGGTTTAAGGTAAGAGAGGTGATGG 59.810 44.000 0.00 0.00 0.00 3.51
2379 2449 5.189145 GGTTTAAGGTAAGAGAGGTGATGGA 59.811 44.000 0.00 0.00 0.00 3.41
2380 2450 5.934402 TTAAGGTAAGAGAGGTGATGGAC 57.066 43.478 0.00 0.00 0.00 4.02
2381 2451 2.379972 AGGTAAGAGAGGTGATGGACG 58.620 52.381 0.00 0.00 0.00 4.79
2382 2452 1.409427 GGTAAGAGAGGTGATGGACGG 59.591 57.143 0.00 0.00 0.00 4.79
2383 2453 1.112113 TAAGAGAGGTGATGGACGGC 58.888 55.000 0.00 0.00 0.00 5.68
2384 2454 1.949847 AAGAGAGGTGATGGACGGCG 61.950 60.000 4.80 4.80 0.00 6.46
2385 2455 3.432051 GAGAGGTGATGGACGGCGG 62.432 68.421 13.24 0.00 0.00 6.13
2386 2456 3.771160 GAGGTGATGGACGGCGGT 61.771 66.667 13.24 0.00 0.00 5.68
2387 2457 4.082523 AGGTGATGGACGGCGGTG 62.083 66.667 13.24 0.00 0.00 4.94
2388 2458 4.077184 GGTGATGGACGGCGGTGA 62.077 66.667 13.24 0.00 0.00 4.02
2389 2459 2.186903 GTGATGGACGGCGGTGAT 59.813 61.111 13.24 0.00 0.00 3.06
2390 2460 2.173669 GTGATGGACGGCGGTGATG 61.174 63.158 13.24 0.00 0.00 3.07
2391 2461 2.588877 GATGGACGGCGGTGATGG 60.589 66.667 13.24 0.00 0.00 3.51
2392 2462 4.175337 ATGGACGGCGGTGATGGG 62.175 66.667 13.24 0.00 0.00 4.00
2395 2465 4.404098 GACGGCGGTGATGGGGTT 62.404 66.667 13.24 0.00 0.00 4.11
2396 2466 3.912745 GACGGCGGTGATGGGGTTT 62.913 63.158 13.24 0.00 0.00 3.27
2397 2467 3.131478 CGGCGGTGATGGGGTTTC 61.131 66.667 0.00 0.00 0.00 2.78
2398 2468 3.131478 GGCGGTGATGGGGTTTCG 61.131 66.667 0.00 0.00 0.00 3.46
2399 2469 3.810896 GCGGTGATGGGGTTTCGC 61.811 66.667 0.00 0.00 36.51 4.70
2400 2470 3.131478 CGGTGATGGGGTTTCGCC 61.131 66.667 0.00 0.00 39.82 5.54
2401 2471 3.131478 GGTGATGGGGTTTCGCCG 61.131 66.667 0.00 0.00 39.47 6.46
2402 2472 3.131478 GTGATGGGGTTTCGCCGG 61.131 66.667 0.00 0.00 39.47 6.13
2403 2473 3.323286 TGATGGGGTTTCGCCGGA 61.323 61.111 5.05 0.00 39.47 5.14
2404 2474 2.513897 GATGGGGTTTCGCCGGAG 60.514 66.667 5.05 0.00 39.47 4.63
2405 2475 3.006728 ATGGGGTTTCGCCGGAGA 61.007 61.111 5.05 3.81 39.47 3.71
2406 2476 2.530958 GATGGGGTTTCGCCGGAGAA 62.531 60.000 17.34 17.34 39.47 2.87
2407 2477 2.032987 GGGGTTTCGCCGGAGAAA 59.967 61.111 26.87 26.87 37.74 2.52
2408 2478 1.601477 GGGGTTTCGCCGGAGAAAA 60.601 57.895 31.12 15.18 41.18 2.29
2409 2479 1.174078 GGGGTTTCGCCGGAGAAAAA 61.174 55.000 31.12 11.46 41.18 1.94
2424 2494 3.601685 AAAAACTGGGCGTGGGCG 61.602 61.111 0.00 0.00 41.24 6.13
2444 2514 3.483869 GCTAGAGGGTGGCCAGGG 61.484 72.222 5.11 0.00 0.00 4.45
2445 2515 2.770048 CTAGAGGGTGGCCAGGGG 60.770 72.222 5.11 0.00 0.00 4.79
2484 2554 4.687464 GGAGCGGTTCCGAAAAGA 57.313 55.556 15.69 0.00 35.91 2.52
2485 2555 2.457080 GGAGCGGTTCCGAAAAGAG 58.543 57.895 15.69 0.00 35.91 2.85
2486 2556 1.636570 GGAGCGGTTCCGAAAAGAGC 61.637 60.000 15.69 0.00 35.91 4.09
2487 2557 1.956620 GAGCGGTTCCGAAAAGAGCG 61.957 60.000 15.69 0.00 37.35 5.03
2586 2656 2.709213 CTGGGAAAGGAGAAGAAGCTG 58.291 52.381 0.00 0.00 0.00 4.24
2587 2657 1.352352 TGGGAAAGGAGAAGAAGCTGG 59.648 52.381 0.00 0.00 0.00 4.85
2588 2658 1.630878 GGGAAAGGAGAAGAAGCTGGA 59.369 52.381 0.00 0.00 0.00 3.86
2589 2659 2.355615 GGGAAAGGAGAAGAAGCTGGAG 60.356 54.545 0.00 0.00 0.00 3.86
2590 2660 2.355615 GGAAAGGAGAAGAAGCTGGAGG 60.356 54.545 0.00 0.00 0.00 4.30
2591 2661 2.334006 AAGGAGAAGAAGCTGGAGGA 57.666 50.000 0.00 0.00 0.00 3.71
2592 2662 2.334006 AGGAGAAGAAGCTGGAGGAA 57.666 50.000 0.00 0.00 0.00 3.36
2593 2663 2.187100 AGGAGAAGAAGCTGGAGGAAG 58.813 52.381 0.00 0.00 0.00 3.46
2594 2664 2.183679 GGAGAAGAAGCTGGAGGAAGA 58.816 52.381 0.00 0.00 0.00 2.87
2595 2665 2.569404 GGAGAAGAAGCTGGAGGAAGAA 59.431 50.000 0.00 0.00 0.00 2.52
2596 2666 3.369366 GGAGAAGAAGCTGGAGGAAGAAG 60.369 52.174 0.00 0.00 0.00 2.85
2597 2667 3.513515 GAGAAGAAGCTGGAGGAAGAAGA 59.486 47.826 0.00 0.00 0.00 2.87
2598 2668 3.906846 AGAAGAAGCTGGAGGAAGAAGAA 59.093 43.478 0.00 0.00 0.00 2.52
2599 2669 3.979101 AGAAGCTGGAGGAAGAAGAAG 57.021 47.619 0.00 0.00 0.00 2.85
2600 2670 2.571202 AGAAGCTGGAGGAAGAAGAAGG 59.429 50.000 0.00 0.00 0.00 3.46
2601 2671 1.284313 AGCTGGAGGAAGAAGAAGGG 58.716 55.000 0.00 0.00 0.00 3.95
2602 2672 0.393673 GCTGGAGGAAGAAGAAGGGC 60.394 60.000 0.00 0.00 0.00 5.19
2603 2673 1.284313 CTGGAGGAAGAAGAAGGGCT 58.716 55.000 0.00 0.00 0.00 5.19
2604 2674 0.987294 TGGAGGAAGAAGAAGGGCTG 59.013 55.000 0.00 0.00 0.00 4.85
2605 2675 0.393673 GGAGGAAGAAGAAGGGCTGC 60.394 60.000 0.00 0.00 0.00 5.25
2606 2676 0.393673 GAGGAAGAAGAAGGGCTGCC 60.394 60.000 11.05 11.05 0.00 4.85
2607 2677 1.379176 GGAAGAAGAAGGGCTGCCC 60.379 63.158 30.57 30.57 45.90 5.36
2616 2686 2.361104 GGGCTGCCCATCGTTCAA 60.361 61.111 32.46 0.00 44.65 2.69
2617 2687 1.754234 GGGCTGCCCATCGTTCAAT 60.754 57.895 32.46 0.00 44.65 2.57
2618 2688 1.728490 GGGCTGCCCATCGTTCAATC 61.728 60.000 32.46 0.00 44.65 2.67
2619 2689 0.749454 GGCTGCCCATCGTTCAATCT 60.749 55.000 7.66 0.00 0.00 2.40
2620 2690 0.379669 GCTGCCCATCGTTCAATCTG 59.620 55.000 0.00 0.00 0.00 2.90
2621 2691 0.379669 CTGCCCATCGTTCAATCTGC 59.620 55.000 0.00 0.00 0.00 4.26
2622 2692 0.322366 TGCCCATCGTTCAATCTGCA 60.322 50.000 0.00 0.00 0.00 4.41
2623 2693 1.027357 GCCCATCGTTCAATCTGCAT 58.973 50.000 0.00 0.00 0.00 3.96
2624 2694 1.002033 GCCCATCGTTCAATCTGCATC 60.002 52.381 0.00 0.00 0.00 3.91
2625 2695 1.605710 CCCATCGTTCAATCTGCATCC 59.394 52.381 0.00 0.00 0.00 3.51
2626 2696 2.291365 CCATCGTTCAATCTGCATCCA 58.709 47.619 0.00 0.00 0.00 3.41
2627 2697 2.684374 CCATCGTTCAATCTGCATCCAA 59.316 45.455 0.00 0.00 0.00 3.53
2628 2698 3.488047 CCATCGTTCAATCTGCATCCAAC 60.488 47.826 0.00 0.00 0.00 3.77
2629 2699 2.777094 TCGTTCAATCTGCATCCAACA 58.223 42.857 0.00 0.00 0.00 3.33
2630 2700 2.743664 TCGTTCAATCTGCATCCAACAG 59.256 45.455 0.00 0.00 36.44 3.16
2631 2701 2.485426 CGTTCAATCTGCATCCAACAGT 59.515 45.455 0.00 0.00 36.50 3.55
2632 2702 3.425359 CGTTCAATCTGCATCCAACAGTC 60.425 47.826 0.00 0.00 36.50 3.51
2633 2703 3.421919 TCAATCTGCATCCAACAGTCA 57.578 42.857 0.00 0.00 36.50 3.41
2634 2704 3.959293 TCAATCTGCATCCAACAGTCAT 58.041 40.909 0.00 0.00 36.50 3.06
2635 2705 3.943381 TCAATCTGCATCCAACAGTCATC 59.057 43.478 0.00 0.00 36.50 2.92
2636 2706 2.014335 TCTGCATCCAACAGTCATCG 57.986 50.000 0.00 0.00 36.50 3.84
2637 2707 1.550072 TCTGCATCCAACAGTCATCGA 59.450 47.619 0.00 0.00 36.50 3.59
2638 2708 1.662629 CTGCATCCAACAGTCATCGAC 59.337 52.381 0.00 0.00 0.00 4.20
2639 2709 1.276138 TGCATCCAACAGTCATCGACT 59.724 47.619 0.00 0.00 44.44 4.18
2671 2741 8.434870 AATTTAAAAATCAATCGACTGACGTG 57.565 30.769 0.00 0.00 43.13 4.49
2672 2742 6.533819 TTAAAAATCAATCGACTGACGTGT 57.466 33.333 0.00 0.00 43.13 4.49
2673 2743 7.640616 TTAAAAATCAATCGACTGACGTGTA 57.359 32.000 0.00 0.00 43.13 2.90
2674 2744 5.763444 AAAATCAATCGACTGACGTGTAG 57.237 39.130 0.00 0.00 43.13 2.74
2675 2745 2.257974 TCAATCGACTGACGTGTAGC 57.742 50.000 0.00 0.00 43.13 3.58
2676 2746 1.135489 TCAATCGACTGACGTGTAGCC 60.135 52.381 0.00 0.00 43.13 3.93
2677 2747 0.885879 AATCGACTGACGTGTAGCCA 59.114 50.000 0.00 0.00 43.13 4.75
2678 2748 1.103803 ATCGACTGACGTGTAGCCAT 58.896 50.000 0.00 0.00 43.13 4.40
2679 2749 0.885879 TCGACTGACGTGTAGCCATT 59.114 50.000 0.00 0.00 43.13 3.16
2680 2750 1.135489 TCGACTGACGTGTAGCCATTC 60.135 52.381 0.00 0.00 43.13 2.67
2681 2751 1.641577 GACTGACGTGTAGCCATTCC 58.358 55.000 0.00 0.00 0.00 3.01
2682 2752 0.249398 ACTGACGTGTAGCCATTCCC 59.751 55.000 0.00 0.00 0.00 3.97
2683 2753 0.249120 CTGACGTGTAGCCATTCCCA 59.751 55.000 0.00 0.00 0.00 4.37
2684 2754 0.908910 TGACGTGTAGCCATTCCCAT 59.091 50.000 0.00 0.00 0.00 4.00
2685 2755 2.102420 CTGACGTGTAGCCATTCCCATA 59.898 50.000 0.00 0.00 0.00 2.74
2695 2765 5.519183 AGCCATTCCCATATTATACTGCA 57.481 39.130 0.00 0.00 0.00 4.41
2713 2783 4.856664 CTGCAAAATGGAGTGCTATGATC 58.143 43.478 0.00 0.00 41.48 2.92
2714 2784 4.529897 TGCAAAATGGAGTGCTATGATCT 58.470 39.130 0.00 0.00 41.48 2.75
2716 2786 5.066893 TGCAAAATGGAGTGCTATGATCTTC 59.933 40.000 0.00 0.00 41.48 2.87
2755 2826 7.753309 ATACTCAGATCTTCTATAACGTGCT 57.247 36.000 0.00 0.00 0.00 4.40
2759 2830 6.036470 TCAGATCTTCTATAACGTGCTTGTG 58.964 40.000 0.00 0.00 0.00 3.33
2760 2831 6.036470 CAGATCTTCTATAACGTGCTTGTGA 58.964 40.000 0.00 0.00 0.00 3.58
2761 2832 6.198029 CAGATCTTCTATAACGTGCTTGTGAG 59.802 42.308 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 3.322466 CCCGCACTCCCTCAACCT 61.322 66.667 0.00 0.00 0.00 3.50
75 76 2.997315 CAGTCCCGCACTCCCTCA 60.997 66.667 0.00 0.00 30.26 3.86
79 80 2.574399 GTCTCAGTCCCGCACTCC 59.426 66.667 0.00 0.00 30.26 3.85
86 87 2.187946 CGCCATGGTCTCAGTCCC 59.812 66.667 14.67 0.00 0.00 4.46
108 109 2.963782 GAGTAAGATGTGGACCCGGTAT 59.036 50.000 0.00 0.00 0.00 2.73
109 110 2.291735 TGAGTAAGATGTGGACCCGGTA 60.292 50.000 0.00 0.00 0.00 4.02
143 144 4.657039 AGATAGGTTTCGCCCCTTATAACA 59.343 41.667 0.00 0.00 38.26 2.41
154 155 3.851098 AGTCAAGTCAGATAGGTTTCGC 58.149 45.455 0.00 0.00 0.00 4.70
161 162 5.354513 TCCGTGAACTAGTCAAGTCAGATAG 59.645 44.000 0.00 0.00 37.50 2.08
181 182 0.544697 ACCAACAAACCTCAGTCCGT 59.455 50.000 0.00 0.00 0.00 4.69
182 183 1.675552 AACCAACAAACCTCAGTCCG 58.324 50.000 0.00 0.00 0.00 4.79
197 198 2.158740 TCGTCCCTCAACATTGAAACCA 60.159 45.455 0.00 0.00 36.64 3.67
261 262 6.588204 ACATCACAACTGGAGTAAGTGTTTA 58.412 36.000 10.40 0.00 36.33 2.01
269 270 5.874810 GCAGAATAACATCACAACTGGAGTA 59.125 40.000 0.00 0.00 0.00 2.59
274 275 7.878477 AAATTGCAGAATAACATCACAACTG 57.122 32.000 0.00 0.00 0.00 3.16
277 278 8.358895 TGAGAAAATTGCAGAATAACATCACAA 58.641 29.630 0.00 0.00 0.00 3.33
290 291 5.775686 TGTTCCAGATTGAGAAAATTGCAG 58.224 37.500 0.00 0.00 0.00 4.41
373 374 2.593725 CGCGTCCTCGGAGGGATA 60.594 66.667 23.39 1.73 37.73 2.59
378 379 4.813526 CACGACGCGTCCTCGGAG 62.814 72.222 31.84 19.39 38.32 4.63
474 479 2.969821 ACAGTAACCAAAGGATGCCA 57.030 45.000 0.00 0.00 0.00 4.92
528 537 3.918220 CGTCCGCAGCTTCGCATC 61.918 66.667 0.00 0.00 0.00 3.91
541 550 1.206831 GTTGCGCCTTTCTTCGTCC 59.793 57.895 4.18 0.00 0.00 4.79
543 552 0.889186 ATGGTTGCGCCTTTCTTCGT 60.889 50.000 4.18 0.00 38.35 3.85
726 735 6.348621 TGTCTGTACAACGGTAACTTTTTC 57.651 37.500 0.00 0.00 30.91 2.29
795 807 3.367703 CCAAACCAGATTCCATTCACAGC 60.368 47.826 0.00 0.00 0.00 4.40
803 815 1.976474 GCGGCCAAACCAGATTCCA 60.976 57.895 2.24 0.00 39.03 3.53
829 841 2.805353 CAGTTGACCGGACGAGCG 60.805 66.667 9.46 0.00 0.00 5.03
870 882 3.181437 CCACGGGCTAATTTATAAGGGGT 60.181 47.826 0.00 0.00 0.00 4.95
894 907 1.450312 GGGTGATCAGAAGTGCCCG 60.450 63.158 0.00 0.00 0.00 6.13
897 910 2.079925 GAACTGGGTGATCAGAAGTGC 58.920 52.381 0.00 0.00 38.11 4.40
901 914 4.286808 TCAGAATGAACTGGGTGATCAGAA 59.713 41.667 0.00 0.00 45.97 3.02
1193 1230 2.241880 ACAACGACGAAAGGTGGCG 61.242 57.895 0.00 0.00 0.00 5.69
1209 1246 1.218047 GTAGATCACGCCCTGCACA 59.782 57.895 0.00 0.00 0.00 4.57
1230 1267 1.284785 CCCCTGGATTTGCAGGACTTA 59.715 52.381 18.62 0.00 40.95 2.24
1236 1273 0.034186 TGTAGCCCCTGGATTTGCAG 60.034 55.000 0.00 0.00 0.00 4.41
1272 1309 1.359459 GCGAACCTTGGATCGGTGAC 61.359 60.000 18.35 1.28 39.38 3.67
1293 1330 4.833380 GGCGAGAGATATATATAGGGGCAA 59.167 45.833 0.00 0.00 0.00 4.52
1299 1336 7.380536 ACGGAGTAGGCGAGAGATATATATAG 58.619 42.308 0.00 0.00 41.94 1.31
1302 1339 5.611128 ACGGAGTAGGCGAGAGATATATA 57.389 43.478 0.00 0.00 41.94 0.86
1305 1342 2.863132 ACGGAGTAGGCGAGAGATAT 57.137 50.000 0.00 0.00 41.94 1.63
1576 1613 1.366366 GCGACGTGCCCAGGTATAT 59.634 57.895 0.00 0.00 37.76 0.86
1709 1746 2.161486 CCGTAGAAGAGCACGCTGC 61.161 63.158 0.00 2.28 45.46 5.25
1716 1753 2.798364 GGAGGGGCCGTAGAAGAGC 61.798 68.421 0.00 0.00 0.00 4.09
1789 1826 7.553044 GCCAAGGTGACTAGTTGATTATTACTT 59.447 37.037 0.00 0.00 42.68 2.24
1809 1846 1.574134 CAAGTGCAAAACTGCCAAGG 58.426 50.000 0.00 0.00 39.81 3.61
1810 1847 0.932399 GCAAGTGCAAAACTGCCAAG 59.068 50.000 0.00 0.00 39.81 3.61
1836 1896 4.111198 ACACGTACAATACACAAACACGA 58.889 39.130 0.00 0.00 0.00 4.35
1838 1898 5.006941 AGGAACACGTACAATACACAAACAC 59.993 40.000 0.00 0.00 0.00 3.32
1840 1900 5.662211 AGGAACACGTACAATACACAAAC 57.338 39.130 0.00 0.00 0.00 2.93
1847 1907 3.446161 AGCTGCTAGGAACACGTACAATA 59.554 43.478 0.00 0.00 0.00 1.90
1853 1918 2.168496 TCTAAGCTGCTAGGAACACGT 58.832 47.619 0.90 0.00 0.00 4.49
1870 1935 4.116961 CTGAACGTAAATTGGCGGATCTA 58.883 43.478 0.00 0.00 0.00 1.98
1871 1936 2.936498 CTGAACGTAAATTGGCGGATCT 59.064 45.455 0.00 0.00 0.00 2.75
1872 1937 2.676342 ACTGAACGTAAATTGGCGGATC 59.324 45.455 0.00 5.41 0.00 3.36
1873 1938 2.706890 ACTGAACGTAAATTGGCGGAT 58.293 42.857 0.00 0.00 0.00 4.18
1874 1939 2.172851 ACTGAACGTAAATTGGCGGA 57.827 45.000 0.00 0.00 0.00 5.54
1875 1940 2.482721 AGAACTGAACGTAAATTGGCGG 59.517 45.455 0.00 0.00 0.00 6.13
1876 1941 3.806316 AGAACTGAACGTAAATTGGCG 57.194 42.857 0.00 1.09 0.00 5.69
1890 1955 5.357032 ACCAACCAACAAACTAGAAGAACTG 59.643 40.000 0.00 0.00 0.00 3.16
1904 1969 1.515020 GCAACTGCACCAACCAACA 59.485 52.632 0.00 0.00 41.59 3.33
1921 1987 5.163602 ACTCAAGATACTAGCACTACACTGC 60.164 44.000 0.00 0.00 37.44 4.40
1959 2025 3.830744 TCATAGTTATGGTGGGGAACG 57.169 47.619 0.00 0.00 34.50 3.95
1967 2033 6.252599 TGGCAGAAGAATCATAGTTATGGT 57.747 37.500 0.00 0.00 34.50 3.55
2019 2087 2.357760 GGCAACCGACAGCCGTAA 60.358 61.111 0.00 0.00 41.70 3.18
2034 2102 0.179108 GTGGATCTCGGTGTAGTGGC 60.179 60.000 0.00 0.00 0.00 5.01
2074 2143 2.241176 AGGTTCCCACTTCAAGTGTGAA 59.759 45.455 16.50 13.72 44.50 3.18
2082 2151 1.850345 ACTTCCAAGGTTCCCACTTCA 59.150 47.619 0.00 0.00 0.00 3.02
2127 2197 5.764432 AGACGGAGGGAGTATAATATACCC 58.236 45.833 6.79 7.79 40.71 3.69
2141 2211 6.659668 TGAGATACTTATTATGAGACGGAGGG 59.340 42.308 0.00 0.00 0.00 4.30
2142 2212 7.689446 TGAGATACTTATTATGAGACGGAGG 57.311 40.000 0.00 0.00 0.00 4.30
2143 2213 8.788806 AGTTGAGATACTTATTATGAGACGGAG 58.211 37.037 0.00 0.00 0.00 4.63
2144 2214 8.693120 AGTTGAGATACTTATTATGAGACGGA 57.307 34.615 0.00 0.00 0.00 4.69
2199 2269 8.085909 CCGTCCCAAAATAAATGTCTTAAACTT 58.914 33.333 0.00 0.00 0.00 2.66
2200 2270 7.449086 TCCGTCCCAAAATAAATGTCTTAAACT 59.551 33.333 0.00 0.00 0.00 2.66
2201 2271 7.595604 TCCGTCCCAAAATAAATGTCTTAAAC 58.404 34.615 0.00 0.00 0.00 2.01
2202 2272 7.762588 TCCGTCCCAAAATAAATGTCTTAAA 57.237 32.000 0.00 0.00 0.00 1.52
2203 2273 7.147983 CCATCCGTCCCAAAATAAATGTCTTAA 60.148 37.037 0.00 0.00 0.00 1.85
2204 2274 6.320164 CCATCCGTCCCAAAATAAATGTCTTA 59.680 38.462 0.00 0.00 0.00 2.10
2205 2275 5.127031 CCATCCGTCCCAAAATAAATGTCTT 59.873 40.000 0.00 0.00 0.00 3.01
2206 2276 4.644685 CCATCCGTCCCAAAATAAATGTCT 59.355 41.667 0.00 0.00 0.00 3.41
2207 2277 4.642885 TCCATCCGTCCCAAAATAAATGTC 59.357 41.667 0.00 0.00 0.00 3.06
2208 2278 4.605183 TCCATCCGTCCCAAAATAAATGT 58.395 39.130 0.00 0.00 0.00 2.71
2209 2279 4.644685 ACTCCATCCGTCCCAAAATAAATG 59.355 41.667 0.00 0.00 0.00 2.32
2210 2280 4.867086 ACTCCATCCGTCCCAAAATAAAT 58.133 39.130 0.00 0.00 0.00 1.40
2211 2281 4.310022 ACTCCATCCGTCCCAAAATAAA 57.690 40.909 0.00 0.00 0.00 1.40
2212 2282 4.384427 GGTACTCCATCCGTCCCAAAATAA 60.384 45.833 0.00 0.00 0.00 1.40
2213 2283 3.135167 GGTACTCCATCCGTCCCAAAATA 59.865 47.826 0.00 0.00 0.00 1.40
2214 2284 2.092592 GGTACTCCATCCGTCCCAAAAT 60.093 50.000 0.00 0.00 0.00 1.82
2215 2285 1.279846 GGTACTCCATCCGTCCCAAAA 59.720 52.381 0.00 0.00 0.00 2.44
2216 2286 0.906775 GGTACTCCATCCGTCCCAAA 59.093 55.000 0.00 0.00 0.00 3.28
2217 2287 0.252330 TGGTACTCCATCCGTCCCAA 60.252 55.000 0.00 0.00 39.03 4.12
2218 2288 0.974010 GTGGTACTCCATCCGTCCCA 60.974 60.000 0.00 0.00 46.20 4.37
2219 2289 0.974010 TGTGGTACTCCATCCGTCCC 60.974 60.000 0.00 0.00 46.20 4.46
2220 2290 1.120530 ATGTGGTACTCCATCCGTCC 58.879 55.000 0.00 0.00 46.20 4.79
2221 2291 2.981859 AATGTGGTACTCCATCCGTC 57.018 50.000 0.00 0.00 46.20 4.79
2222 2292 3.773119 AGTTAATGTGGTACTCCATCCGT 59.227 43.478 0.00 0.00 46.20 4.69
2223 2293 4.402056 AGTTAATGTGGTACTCCATCCG 57.598 45.455 0.00 0.00 46.20 4.18
2224 2294 7.990886 TCATTTAGTTAATGTGGTACTCCATCC 59.009 37.037 2.05 0.00 46.20 3.51
2225 2295 8.827677 GTCATTTAGTTAATGTGGTACTCCATC 58.172 37.037 2.05 0.00 46.20 3.51
2226 2296 8.325787 TGTCATTTAGTTAATGTGGTACTCCAT 58.674 33.333 2.05 0.00 46.20 3.41
2227 2297 7.681679 TGTCATTTAGTTAATGTGGTACTCCA 58.318 34.615 2.05 0.00 43.41 3.86
2228 2298 7.822822 ACTGTCATTTAGTTAATGTGGTACTCC 59.177 37.037 2.05 0.00 43.41 3.85
2229 2299 8.773404 ACTGTCATTTAGTTAATGTGGTACTC 57.227 34.615 2.05 0.00 43.41 2.59
2230 2300 7.544566 CGACTGTCATTTAGTTAATGTGGTACT 59.455 37.037 8.73 0.00 43.41 2.73
2231 2301 7.543172 TCGACTGTCATTTAGTTAATGTGGTAC 59.457 37.037 8.73 0.00 43.41 3.34
2232 2302 7.543172 GTCGACTGTCATTTAGTTAATGTGGTA 59.457 37.037 8.70 0.00 43.41 3.25
2233 2303 6.367969 GTCGACTGTCATTTAGTTAATGTGGT 59.632 38.462 8.70 0.84 43.41 4.16
2234 2304 6.590292 AGTCGACTGTCATTTAGTTAATGTGG 59.410 38.462 19.30 0.00 43.41 4.17
2235 2305 7.328493 TCAGTCGACTGTCATTTAGTTAATGTG 59.672 37.037 37.21 12.90 44.12 3.21
2236 2306 7.375834 TCAGTCGACTGTCATTTAGTTAATGT 58.624 34.615 37.21 0.39 44.12 2.71
2237 2307 7.812309 TCAGTCGACTGTCATTTAGTTAATG 57.188 36.000 37.21 13.58 44.12 1.90
2238 2308 9.436957 AATTCAGTCGACTGTCATTTAGTTAAT 57.563 29.630 37.21 24.37 44.12 1.40
2239 2309 8.827177 AATTCAGTCGACTGTCATTTAGTTAA 57.173 30.769 37.21 23.42 44.12 2.01
2240 2310 8.827177 AAATTCAGTCGACTGTCATTTAGTTA 57.173 30.769 37.21 17.03 44.12 2.24
2241 2311 7.730364 AAATTCAGTCGACTGTCATTTAGTT 57.270 32.000 37.21 20.88 44.12 2.24
2242 2312 7.730364 AAAATTCAGTCGACTGTCATTTAGT 57.270 32.000 33.87 25.28 44.12 2.24
2245 2315 9.965824 AATTTAAAATTCAGTCGACTGTCATTT 57.034 25.926 37.21 33.70 44.12 2.32
2246 2316 9.398170 CAATTTAAAATTCAGTCGACTGTCATT 57.602 29.630 37.21 31.15 44.12 2.57
2247 2317 8.023128 CCAATTTAAAATTCAGTCGACTGTCAT 58.977 33.333 37.21 28.24 44.12 3.06
2248 2318 7.359595 CCAATTTAAAATTCAGTCGACTGTCA 58.640 34.615 37.21 27.47 44.12 3.58
2249 2319 6.801862 CCCAATTTAAAATTCAGTCGACTGTC 59.198 38.462 37.21 3.89 44.12 3.51
2250 2320 6.294508 CCCCAATTTAAAATTCAGTCGACTGT 60.295 38.462 37.21 23.96 44.12 3.55
2251 2321 6.092748 CCCCAATTTAAAATTCAGTCGACTG 58.907 40.000 34.76 34.76 45.08 3.51
2252 2322 5.336451 GCCCCAATTTAAAATTCAGTCGACT 60.336 40.000 13.58 13.58 0.00 4.18
2253 2323 4.862574 GCCCCAATTTAAAATTCAGTCGAC 59.137 41.667 7.70 7.70 0.00 4.20
2254 2324 4.081917 GGCCCCAATTTAAAATTCAGTCGA 60.082 41.667 0.00 0.00 0.00 4.20
2255 2325 4.180817 GGCCCCAATTTAAAATTCAGTCG 58.819 43.478 0.00 0.00 0.00 4.18
2256 2326 5.159273 TGGCCCCAATTTAAAATTCAGTC 57.841 39.130 0.00 0.00 0.00 3.51
2257 2327 4.597075 ACTGGCCCCAATTTAAAATTCAGT 59.403 37.500 0.00 0.00 0.00 3.41
2258 2328 5.164620 ACTGGCCCCAATTTAAAATTCAG 57.835 39.130 0.00 0.00 0.00 3.02
2259 2329 4.322349 CGACTGGCCCCAATTTAAAATTCA 60.322 41.667 0.00 0.00 0.00 2.57
2260 2330 4.081917 TCGACTGGCCCCAATTTAAAATTC 60.082 41.667 0.00 0.00 0.00 2.17
2261 2331 3.835395 TCGACTGGCCCCAATTTAAAATT 59.165 39.130 0.00 0.00 0.00 1.82
2262 2332 3.436243 TCGACTGGCCCCAATTTAAAAT 58.564 40.909 0.00 0.00 0.00 1.82
2263 2333 2.877866 TCGACTGGCCCCAATTTAAAA 58.122 42.857 0.00 0.00 0.00 1.52
2264 2334 2.588464 TCGACTGGCCCCAATTTAAA 57.412 45.000 0.00 0.00 0.00 1.52
2265 2335 2.818751 ATCGACTGGCCCCAATTTAA 57.181 45.000 0.00 0.00 0.00 1.52
2266 2336 2.818751 AATCGACTGGCCCCAATTTA 57.181 45.000 0.00 0.00 0.00 1.40
2267 2337 1.937191 AAATCGACTGGCCCCAATTT 58.063 45.000 0.00 0.00 0.00 1.82
2268 2338 1.550072 CAAAATCGACTGGCCCCAATT 59.450 47.619 0.00 0.00 0.00 2.32
2269 2339 1.185315 CAAAATCGACTGGCCCCAAT 58.815 50.000 0.00 0.00 0.00 3.16
2270 2340 0.111446 TCAAAATCGACTGGCCCCAA 59.889 50.000 0.00 0.00 0.00 4.12
2271 2341 0.322456 CTCAAAATCGACTGGCCCCA 60.322 55.000 0.00 0.00 0.00 4.96
2272 2342 0.035439 TCTCAAAATCGACTGGCCCC 60.035 55.000 0.00 0.00 0.00 5.80
2273 2343 1.339151 ACTCTCAAAATCGACTGGCCC 60.339 52.381 0.00 0.00 0.00 5.80
2274 2344 2.100605 ACTCTCAAAATCGACTGGCC 57.899 50.000 0.00 0.00 0.00 5.36
2275 2345 3.067106 TGAACTCTCAAAATCGACTGGC 58.933 45.455 0.00 0.00 0.00 4.85
2276 2346 3.433615 GGTGAACTCTCAAAATCGACTGG 59.566 47.826 0.00 0.00 31.88 4.00
2277 2347 3.121944 CGGTGAACTCTCAAAATCGACTG 59.878 47.826 0.00 0.00 31.88 3.51
2278 2348 3.318017 CGGTGAACTCTCAAAATCGACT 58.682 45.455 0.00 0.00 31.88 4.18
2279 2349 2.412089 CCGGTGAACTCTCAAAATCGAC 59.588 50.000 0.00 0.00 31.88 4.20
2280 2350 2.297880 TCCGGTGAACTCTCAAAATCGA 59.702 45.455 0.00 0.00 31.88 3.59
2281 2351 2.668457 CTCCGGTGAACTCTCAAAATCG 59.332 50.000 0.00 0.00 31.88 3.34
2282 2352 3.433615 CACTCCGGTGAACTCTCAAAATC 59.566 47.826 11.17 0.00 45.61 2.17
2283 2353 3.403038 CACTCCGGTGAACTCTCAAAAT 58.597 45.455 11.17 0.00 45.61 1.82
2284 2354 2.833794 CACTCCGGTGAACTCTCAAAA 58.166 47.619 11.17 0.00 45.61 2.44
2285 2355 2.526304 CACTCCGGTGAACTCTCAAA 57.474 50.000 11.17 0.00 45.61 2.69
2299 2369 2.444895 ATCCCTCCGGCTCACTCC 60.445 66.667 0.00 0.00 0.00 3.85
2300 2370 2.801631 CCATCCCTCCGGCTCACTC 61.802 68.421 0.00 0.00 0.00 3.51
2301 2371 2.765807 CCATCCCTCCGGCTCACT 60.766 66.667 0.00 0.00 0.00 3.41
2302 2372 2.317149 CTTCCATCCCTCCGGCTCAC 62.317 65.000 0.00 0.00 0.00 3.51
2303 2373 2.040442 TTCCATCCCTCCGGCTCA 59.960 61.111 0.00 0.00 0.00 4.26
2304 2374 2.812619 CCTTCCATCCCTCCGGCTC 61.813 68.421 0.00 0.00 0.00 4.70
2305 2375 2.770048 CCTTCCATCCCTCCGGCT 60.770 66.667 0.00 0.00 0.00 5.52
2306 2376 3.878667 CCCTTCCATCCCTCCGGC 61.879 72.222 0.00 0.00 0.00 6.13
2307 2377 3.171388 CCCCTTCCATCCCTCCGG 61.171 72.222 0.00 0.00 0.00 5.14
2308 2378 3.878667 GCCCCTTCCATCCCTCCG 61.879 72.222 0.00 0.00 0.00 4.63
2309 2379 2.368878 AGCCCCTTCCATCCCTCC 60.369 66.667 0.00 0.00 0.00 4.30
2310 2380 2.812619 CGAGCCCCTTCCATCCCTC 61.813 68.421 0.00 0.00 0.00 4.30
2311 2381 2.770048 CGAGCCCCTTCCATCCCT 60.770 66.667 0.00 0.00 0.00 4.20
2312 2382 4.570874 GCGAGCCCCTTCCATCCC 62.571 72.222 0.00 0.00 0.00 3.85
2313 2383 4.570874 GGCGAGCCCCTTCCATCC 62.571 72.222 1.97 0.00 0.00 3.51
2314 2384 4.918201 CGGCGAGCCCCTTCCATC 62.918 72.222 0.00 0.00 0.00 3.51
2329 2399 2.382023 TAGATGGGGTAGCCCTCCGG 62.382 65.000 29.64 0.00 44.66 5.14
2330 2400 0.252284 ATAGATGGGGTAGCCCTCCG 60.252 60.000 29.64 0.00 44.66 4.63
2331 2401 1.079658 AGATAGATGGGGTAGCCCTCC 59.920 57.143 29.64 20.29 44.66 4.30
2332 2402 2.632763 AGATAGATGGGGTAGCCCTC 57.367 55.000 29.64 22.52 44.66 4.30
2333 2403 4.430441 CTTAAGATAGATGGGGTAGCCCT 58.570 47.826 29.64 15.83 44.66 5.19
2334 2404 3.519913 CCTTAAGATAGATGGGGTAGCCC 59.480 52.174 23.81 23.81 44.51 5.19
2335 2405 4.168883 ACCTTAAGATAGATGGGGTAGCC 58.831 47.826 3.36 1.07 0.00 3.93
2336 2406 5.827326 AACCTTAAGATAGATGGGGTAGC 57.173 43.478 3.36 0.00 0.00 3.58
2337 2407 8.376270 CCTTAAACCTTAAGATAGATGGGGTAG 58.624 40.741 3.36 0.00 0.00 3.18
2338 2408 7.853003 ACCTTAAACCTTAAGATAGATGGGGTA 59.147 37.037 3.36 0.00 0.00 3.69
2339 2409 6.681541 ACCTTAAACCTTAAGATAGATGGGGT 59.318 38.462 3.36 0.21 0.00 4.95
2340 2410 7.150447 ACCTTAAACCTTAAGATAGATGGGG 57.850 40.000 3.36 0.00 0.00 4.96
2341 2411 9.780186 CTTACCTTAAACCTTAAGATAGATGGG 57.220 37.037 3.36 0.91 0.00 4.00
2347 2417 9.779951 ACCTCTCTTACCTTAAACCTTAAGATA 57.220 33.333 3.36 0.00 31.71 1.98
2348 2418 8.541234 CACCTCTCTTACCTTAAACCTTAAGAT 58.459 37.037 3.36 0.00 31.71 2.40
2349 2419 7.731688 TCACCTCTCTTACCTTAAACCTTAAGA 59.268 37.037 3.36 0.00 0.00 2.10
2350 2420 7.904205 TCACCTCTCTTACCTTAAACCTTAAG 58.096 38.462 0.00 0.00 0.00 1.85
2351 2421 7.860649 TCACCTCTCTTACCTTAAACCTTAA 57.139 36.000 0.00 0.00 0.00 1.85
2352 2422 7.093024 CCATCACCTCTCTTACCTTAAACCTTA 60.093 40.741 0.00 0.00 0.00 2.69
2353 2423 6.296489 CCATCACCTCTCTTACCTTAAACCTT 60.296 42.308 0.00 0.00 0.00 3.50
2354 2424 5.189934 CCATCACCTCTCTTACCTTAAACCT 59.810 44.000 0.00 0.00 0.00 3.50
2355 2425 5.189145 TCCATCACCTCTCTTACCTTAAACC 59.811 44.000 0.00 0.00 0.00 3.27
2356 2426 6.107343 GTCCATCACCTCTCTTACCTTAAAC 58.893 44.000 0.00 0.00 0.00 2.01
2357 2427 5.105473 CGTCCATCACCTCTCTTACCTTAAA 60.105 44.000 0.00 0.00 0.00 1.52
2358 2428 4.401519 CGTCCATCACCTCTCTTACCTTAA 59.598 45.833 0.00 0.00 0.00 1.85
2359 2429 3.952323 CGTCCATCACCTCTCTTACCTTA 59.048 47.826 0.00 0.00 0.00 2.69
2360 2430 2.761208 CGTCCATCACCTCTCTTACCTT 59.239 50.000 0.00 0.00 0.00 3.50
2361 2431 2.379972 CGTCCATCACCTCTCTTACCT 58.620 52.381 0.00 0.00 0.00 3.08
2362 2432 1.409427 CCGTCCATCACCTCTCTTACC 59.591 57.143 0.00 0.00 0.00 2.85
2363 2433 1.202428 GCCGTCCATCACCTCTCTTAC 60.202 57.143 0.00 0.00 0.00 2.34
2364 2434 1.112113 GCCGTCCATCACCTCTCTTA 58.888 55.000 0.00 0.00 0.00 2.10
2365 2435 1.901085 GCCGTCCATCACCTCTCTT 59.099 57.895 0.00 0.00 0.00 2.85
2366 2436 2.418910 CGCCGTCCATCACCTCTCT 61.419 63.158 0.00 0.00 0.00 3.10
2367 2437 2.105128 CGCCGTCCATCACCTCTC 59.895 66.667 0.00 0.00 0.00 3.20
2368 2438 3.461773 CCGCCGTCCATCACCTCT 61.462 66.667 0.00 0.00 0.00 3.69
2369 2439 3.771160 ACCGCCGTCCATCACCTC 61.771 66.667 0.00 0.00 0.00 3.85
2370 2440 4.082523 CACCGCCGTCCATCACCT 62.083 66.667 0.00 0.00 0.00 4.00
2371 2441 3.385749 ATCACCGCCGTCCATCACC 62.386 63.158 0.00 0.00 0.00 4.02
2372 2442 2.173669 CATCACCGCCGTCCATCAC 61.174 63.158 0.00 0.00 0.00 3.06
2373 2443 2.186644 CATCACCGCCGTCCATCA 59.813 61.111 0.00 0.00 0.00 3.07
2374 2444 2.588877 CCATCACCGCCGTCCATC 60.589 66.667 0.00 0.00 0.00 3.51
2375 2445 4.175337 CCCATCACCGCCGTCCAT 62.175 66.667 0.00 0.00 0.00 3.41
2378 2448 3.912745 AAACCCCATCACCGCCGTC 62.913 63.158 0.00 0.00 0.00 4.79
2379 2449 3.912745 GAAACCCCATCACCGCCGT 62.913 63.158 0.00 0.00 0.00 5.68
2380 2450 3.131478 GAAACCCCATCACCGCCG 61.131 66.667 0.00 0.00 0.00 6.46
2381 2451 3.131478 CGAAACCCCATCACCGCC 61.131 66.667 0.00 0.00 0.00 6.13
2382 2452 3.810896 GCGAAACCCCATCACCGC 61.811 66.667 0.00 0.00 35.91 5.68
2383 2453 3.131478 GGCGAAACCCCATCACCG 61.131 66.667 0.00 0.00 0.00 4.94
2384 2454 3.131478 CGGCGAAACCCCATCACC 61.131 66.667 0.00 0.00 33.26 4.02
2385 2455 3.131478 CCGGCGAAACCCCATCAC 61.131 66.667 9.30 0.00 33.26 3.06
2386 2456 3.323286 TCCGGCGAAACCCCATCA 61.323 61.111 9.30 0.00 33.26 3.07
2387 2457 2.513897 CTCCGGCGAAACCCCATC 60.514 66.667 9.30 0.00 33.26 3.51
2388 2458 2.132089 TTTCTCCGGCGAAACCCCAT 62.132 55.000 15.48 0.00 33.26 4.00
2389 2459 2.340673 TTTTCTCCGGCGAAACCCCA 62.341 55.000 18.88 2.01 32.99 4.96
2390 2460 1.174078 TTTTTCTCCGGCGAAACCCC 61.174 55.000 18.88 0.00 32.99 4.95
2391 2461 2.333291 TTTTTCTCCGGCGAAACCC 58.667 52.632 18.88 0.00 32.99 4.11
2407 2477 3.601685 CGCCCACGCCCAGTTTTT 61.602 61.111 0.00 0.00 0.00 1.94
2425 2495 3.483869 CTGGCCACCCTCTAGCCC 61.484 72.222 0.00 0.00 46.55 5.19
2427 2497 3.483869 CCCTGGCCACCCTCTAGC 61.484 72.222 0.00 0.00 0.00 3.42
2428 2498 2.770048 CCCCTGGCCACCCTCTAG 60.770 72.222 0.00 0.00 0.00 2.43
2463 2533 3.540367 TTTCGGAACCGCTCCCCAC 62.540 63.158 8.48 0.00 41.87 4.61
2464 2534 2.741486 CTTTTCGGAACCGCTCCCCA 62.741 60.000 8.48 0.00 41.87 4.96
2465 2535 2.032987 TTTTCGGAACCGCTCCCC 59.967 61.111 8.48 0.00 41.87 4.81
2466 2536 1.004200 TCTTTTCGGAACCGCTCCC 60.004 57.895 8.48 0.00 41.87 4.30
2467 2537 1.636570 GCTCTTTTCGGAACCGCTCC 61.637 60.000 8.48 0.00 41.40 4.70
2468 2538 1.788481 GCTCTTTTCGGAACCGCTC 59.212 57.895 8.48 0.00 39.59 5.03
2469 2539 2.027625 CGCTCTTTTCGGAACCGCT 61.028 57.895 8.48 0.00 39.59 5.52
2470 2540 2.474712 CGCTCTTTTCGGAACCGC 59.525 61.111 8.48 0.00 39.59 5.68
2560 2630 4.803908 CTCCTTTCCCAGGCCGCC 62.804 72.222 0.00 0.00 43.55 6.13
2561 2631 3.268103 TTCTCCTTTCCCAGGCCGC 62.268 63.158 0.00 0.00 43.55 6.53
2562 2632 1.078143 CTTCTCCTTTCCCAGGCCG 60.078 63.158 0.00 0.00 43.55 6.13
2563 2633 0.698818 TTCTTCTCCTTTCCCAGGCC 59.301 55.000 0.00 0.00 43.55 5.19
2564 2634 1.952839 GCTTCTTCTCCTTTCCCAGGC 60.953 57.143 0.00 0.00 43.55 4.85
2565 2635 1.632920 AGCTTCTTCTCCTTTCCCAGG 59.367 52.381 0.00 0.00 45.64 4.45
2566 2636 2.617532 CCAGCTTCTTCTCCTTTCCCAG 60.618 54.545 0.00 0.00 0.00 4.45
2567 2637 1.352352 CCAGCTTCTTCTCCTTTCCCA 59.648 52.381 0.00 0.00 0.00 4.37
2568 2638 1.630878 TCCAGCTTCTTCTCCTTTCCC 59.369 52.381 0.00 0.00 0.00 3.97
2569 2639 2.355615 CCTCCAGCTTCTTCTCCTTTCC 60.356 54.545 0.00 0.00 0.00 3.13
2570 2640 2.569404 TCCTCCAGCTTCTTCTCCTTTC 59.431 50.000 0.00 0.00 0.00 2.62
2571 2641 2.625639 TCCTCCAGCTTCTTCTCCTTT 58.374 47.619 0.00 0.00 0.00 3.11
2572 2642 2.334006 TCCTCCAGCTTCTTCTCCTT 57.666 50.000 0.00 0.00 0.00 3.36
2573 2643 2.187100 CTTCCTCCAGCTTCTTCTCCT 58.813 52.381 0.00 0.00 0.00 3.69
2574 2644 2.183679 TCTTCCTCCAGCTTCTTCTCC 58.816 52.381 0.00 0.00 0.00 3.71
2575 2645 3.513515 TCTTCTTCCTCCAGCTTCTTCTC 59.486 47.826 0.00 0.00 0.00 2.87
2576 2646 3.515562 TCTTCTTCCTCCAGCTTCTTCT 58.484 45.455 0.00 0.00 0.00 2.85
2577 2647 3.971245 TCTTCTTCCTCCAGCTTCTTC 57.029 47.619 0.00 0.00 0.00 2.87
2578 2648 3.008923 CCTTCTTCTTCCTCCAGCTTCTT 59.991 47.826 0.00 0.00 0.00 2.52
2579 2649 2.571202 CCTTCTTCTTCCTCCAGCTTCT 59.429 50.000 0.00 0.00 0.00 2.85
2580 2650 2.355615 CCCTTCTTCTTCCTCCAGCTTC 60.356 54.545 0.00 0.00 0.00 3.86
2581 2651 1.632920 CCCTTCTTCTTCCTCCAGCTT 59.367 52.381 0.00 0.00 0.00 3.74
2582 2652 1.284313 CCCTTCTTCTTCCTCCAGCT 58.716 55.000 0.00 0.00 0.00 4.24
2583 2653 0.393673 GCCCTTCTTCTTCCTCCAGC 60.394 60.000 0.00 0.00 0.00 4.85
2584 2654 1.065564 CAGCCCTTCTTCTTCCTCCAG 60.066 57.143 0.00 0.00 0.00 3.86
2585 2655 0.987294 CAGCCCTTCTTCTTCCTCCA 59.013 55.000 0.00 0.00 0.00 3.86
2586 2656 0.393673 GCAGCCCTTCTTCTTCCTCC 60.394 60.000 0.00 0.00 0.00 4.30
2587 2657 0.393673 GGCAGCCCTTCTTCTTCCTC 60.394 60.000 0.00 0.00 0.00 3.71
2588 2658 1.688211 GGCAGCCCTTCTTCTTCCT 59.312 57.895 0.00 0.00 0.00 3.36
2589 2659 1.379176 GGGCAGCCCTTCTTCTTCC 60.379 63.158 24.99 0.00 41.34 3.46
2590 2660 0.033699 ATGGGCAGCCCTTCTTCTTC 60.034 55.000 31.51 1.45 45.70 2.87
2591 2661 0.033699 GATGGGCAGCCCTTCTTCTT 60.034 55.000 31.07 10.05 45.70 2.52
2592 2662 1.611965 GATGGGCAGCCCTTCTTCT 59.388 57.895 31.07 11.48 45.70 2.85
2593 2663 1.821332 CGATGGGCAGCCCTTCTTC 60.821 63.158 33.33 22.39 45.70 2.87
2594 2664 2.142292 AACGATGGGCAGCCCTTCTT 62.142 55.000 33.33 26.06 45.70 2.52
2595 2665 2.543067 GAACGATGGGCAGCCCTTCT 62.543 60.000 33.33 21.69 45.70 2.85
2596 2666 2.044946 AACGATGGGCAGCCCTTC 60.045 61.111 31.51 30.33 45.70 3.46
2597 2667 2.044946 GAACGATGGGCAGCCCTT 60.045 61.111 31.51 25.46 45.70 3.95
2598 2668 2.215451 ATTGAACGATGGGCAGCCCT 62.215 55.000 31.51 16.85 45.70 5.19
2599 2669 1.728490 GATTGAACGATGGGCAGCCC 61.728 60.000 25.54 25.54 45.71 5.19
2600 2670 0.749454 AGATTGAACGATGGGCAGCC 60.749 55.000 1.26 1.26 0.00 4.85
2601 2671 0.379669 CAGATTGAACGATGGGCAGC 59.620 55.000 0.00 0.00 0.00 5.25
2602 2672 0.379669 GCAGATTGAACGATGGGCAG 59.620 55.000 0.00 0.00 0.00 4.85
2603 2673 0.322366 TGCAGATTGAACGATGGGCA 60.322 50.000 0.00 0.00 0.00 5.36
2604 2674 1.002033 GATGCAGATTGAACGATGGGC 60.002 52.381 0.00 0.00 0.00 5.36
2605 2675 1.605710 GGATGCAGATTGAACGATGGG 59.394 52.381 0.00 0.00 0.00 4.00
2606 2676 2.291365 TGGATGCAGATTGAACGATGG 58.709 47.619 0.00 0.00 0.00 3.51
2607 2677 3.127376 TGTTGGATGCAGATTGAACGATG 59.873 43.478 0.00 0.00 0.00 3.84
2608 2678 3.346315 TGTTGGATGCAGATTGAACGAT 58.654 40.909 0.00 0.00 0.00 3.73
2609 2679 2.743664 CTGTTGGATGCAGATTGAACGA 59.256 45.455 0.00 0.00 36.12 3.85
2610 2680 2.485426 ACTGTTGGATGCAGATTGAACG 59.515 45.455 0.00 0.00 37.40 3.95
2611 2681 3.503363 TGACTGTTGGATGCAGATTGAAC 59.497 43.478 0.00 0.00 37.40 3.18
2612 2682 3.753815 TGACTGTTGGATGCAGATTGAA 58.246 40.909 0.00 0.00 37.40 2.69
2613 2683 3.421919 TGACTGTTGGATGCAGATTGA 57.578 42.857 0.00 0.00 37.40 2.57
2614 2684 3.242641 CGATGACTGTTGGATGCAGATTG 60.243 47.826 0.00 0.00 37.40 2.67
2615 2685 2.941064 CGATGACTGTTGGATGCAGATT 59.059 45.455 0.00 0.00 37.40 2.40
2616 2686 2.169144 TCGATGACTGTTGGATGCAGAT 59.831 45.455 0.00 0.00 37.40 2.90
2617 2687 1.550072 TCGATGACTGTTGGATGCAGA 59.450 47.619 0.00 0.00 37.40 4.26
2618 2688 1.662629 GTCGATGACTGTTGGATGCAG 59.337 52.381 0.00 0.00 39.67 4.41
2619 2689 1.276138 AGTCGATGACTGTTGGATGCA 59.724 47.619 0.00 0.00 41.76 3.96
2620 2690 2.015736 AGTCGATGACTGTTGGATGC 57.984 50.000 0.00 0.00 41.76 3.91
2645 2715 8.901748 CACGTCAGTCGATTGATTTTTAAATTT 58.098 29.630 14.12 0.00 42.86 1.82
2646 2716 8.073768 ACACGTCAGTCGATTGATTTTTAAATT 58.926 29.630 14.12 0.00 42.86 1.82
2647 2717 7.581476 ACACGTCAGTCGATTGATTTTTAAAT 58.419 30.769 14.12 0.00 42.86 1.40
2648 2718 6.950545 ACACGTCAGTCGATTGATTTTTAAA 58.049 32.000 14.12 0.00 42.86 1.52
2649 2719 6.533819 ACACGTCAGTCGATTGATTTTTAA 57.466 33.333 14.12 0.00 42.86 1.52
2650 2720 6.183360 GCTACACGTCAGTCGATTGATTTTTA 60.183 38.462 14.12 3.59 42.86 1.52
2651 2721 5.389516 GCTACACGTCAGTCGATTGATTTTT 60.390 40.000 14.12 2.62 42.86 1.94
2652 2722 4.091509 GCTACACGTCAGTCGATTGATTTT 59.908 41.667 14.12 2.28 42.86 1.82
2653 2723 3.612860 GCTACACGTCAGTCGATTGATTT 59.387 43.478 14.12 1.31 42.86 2.17
2654 2724 3.179830 GCTACACGTCAGTCGATTGATT 58.820 45.455 14.12 1.68 42.86 2.57
2655 2725 2.479730 GGCTACACGTCAGTCGATTGAT 60.480 50.000 14.12 0.47 42.86 2.57
2656 2726 1.135489 GGCTACACGTCAGTCGATTGA 60.135 52.381 6.51 6.51 42.86 2.57
2657 2727 1.269166 GGCTACACGTCAGTCGATTG 58.731 55.000 0.68 0.68 42.86 2.67
2658 2728 0.885879 TGGCTACACGTCAGTCGATT 59.114 50.000 0.00 0.00 42.86 3.34
2659 2729 1.103803 ATGGCTACACGTCAGTCGAT 58.896 50.000 0.00 0.00 42.86 3.59
2660 2730 0.885879 AATGGCTACACGTCAGTCGA 59.114 50.000 0.00 0.00 42.86 4.20
2661 2731 1.269166 GAATGGCTACACGTCAGTCG 58.731 55.000 0.00 0.00 46.00 4.18
2662 2732 1.641577 GGAATGGCTACACGTCAGTC 58.358 55.000 0.00 0.00 41.33 3.51
2663 2733 0.249398 GGGAATGGCTACACGTCAGT 59.751 55.000 0.00 0.00 0.00 3.41
2664 2734 0.249120 TGGGAATGGCTACACGTCAG 59.751 55.000 0.00 0.00 0.00 3.51
2665 2735 0.908910 ATGGGAATGGCTACACGTCA 59.091 50.000 0.00 0.00 0.00 4.35
2666 2736 2.902705 TATGGGAATGGCTACACGTC 57.097 50.000 0.00 0.00 0.00 4.34
2667 2737 3.857157 AATATGGGAATGGCTACACGT 57.143 42.857 0.00 0.00 0.00 4.49
2668 2738 6.535150 CAGTATAATATGGGAATGGCTACACG 59.465 42.308 0.00 0.00 0.00 4.49
2669 2739 6.316390 GCAGTATAATATGGGAATGGCTACAC 59.684 42.308 0.00 0.00 0.00 2.90
2670 2740 6.012945 TGCAGTATAATATGGGAATGGCTACA 60.013 38.462 0.00 0.00 0.00 2.74
2671 2741 6.414732 TGCAGTATAATATGGGAATGGCTAC 58.585 40.000 0.00 0.00 0.00 3.58
2672 2742 6.634889 TGCAGTATAATATGGGAATGGCTA 57.365 37.500 0.00 0.00 0.00 3.93
2673 2743 5.519183 TGCAGTATAATATGGGAATGGCT 57.481 39.130 0.00 0.00 0.00 4.75
2674 2744 6.588719 TTTGCAGTATAATATGGGAATGGC 57.411 37.500 0.00 0.00 0.00 4.40
2675 2745 8.036575 CCATTTTGCAGTATAATATGGGAATGG 58.963 37.037 0.00 0.00 34.78 3.16
2676 2746 8.805175 TCCATTTTGCAGTATAATATGGGAATG 58.195 33.333 0.00 0.00 37.29 2.67
2677 2747 8.954834 TCCATTTTGCAGTATAATATGGGAAT 57.045 30.769 0.00 0.00 37.29 3.01
2678 2748 8.004215 ACTCCATTTTGCAGTATAATATGGGAA 58.996 33.333 0.00 0.00 37.29 3.97
2679 2749 7.448161 CACTCCATTTTGCAGTATAATATGGGA 59.552 37.037 0.00 0.00 37.29 4.37
2680 2750 7.596494 CACTCCATTTTGCAGTATAATATGGG 58.404 38.462 0.00 0.00 37.29 4.00
2681 2751 7.040201 AGCACTCCATTTTGCAGTATAATATGG 60.040 37.037 0.00 0.00 41.48 2.74
2682 2752 7.879070 AGCACTCCATTTTGCAGTATAATATG 58.121 34.615 0.00 0.00 41.48 1.78
2683 2753 9.745018 ATAGCACTCCATTTTGCAGTATAATAT 57.255 29.630 0.00 0.00 41.48 1.28
2684 2754 9.002600 CATAGCACTCCATTTTGCAGTATAATA 57.997 33.333 0.00 0.00 41.48 0.98
2685 2755 7.720957 TCATAGCACTCCATTTTGCAGTATAAT 59.279 33.333 0.00 0.00 41.48 1.28
2695 2765 5.759059 TGGAAGATCATAGCACTCCATTTT 58.241 37.500 0.00 0.00 0.00 1.82
2705 2775 4.058124 TGCACGTTATGGAAGATCATAGC 58.942 43.478 0.00 0.00 32.05 2.97
2713 2783 5.983118 TGAGTATACATGCACGTTATGGAAG 59.017 40.000 5.50 0.00 29.34 3.46
2714 2784 5.908341 TGAGTATACATGCACGTTATGGAA 58.092 37.500 5.50 3.04 29.34 3.53
2716 2786 5.528870 TCTGAGTATACATGCACGTTATGG 58.471 41.667 5.50 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.