>input_sequence_69558
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-------------------------------------------------------ATGAGGAGCTACGCAGCTGTAGTCC
GGGCAGCACTACTCGTCCTTGGCGCGCTGCTACTCCCTGCCCACCATGTGATGGCCGACTACTCGGCCATGGCA------
---CCGGCGCCGCCGCCACCGCCTAAGCCGGCCAGTGCCATTTCCATGCCCCCGTTGCCAGCCAATGACACCAACATGTC
GCCG------------CCTGTCCAGCTGGCGCCACCTTTCGTCGTTGTGCAGGGCGTGATCTACTGTAAGTCCTGCAAAT
CCAGGGGCTACAACCGCGGCATGGACGCGTCACCGATCCAAGGTTCGCATTGCCCCTATATATATCTCTCGCCTACTCCG
TCGCCTCGGCATGGGGTAGCTAATTAGCCTGCTCAGTCTTAATCTCATGCGTGCATGCATCCATTCGATCCATAAACGCA
GGCTGACATTATCTCTACTGCCCGTTTTGGTTTTGTCTTTGCAGGTGCAACGGTGAATCTGGTGTGCTACGGGAGGAAGG
TGGTGAACGTGACAGCGACGGTGTCGGACGAGCACGGCTACTTCCTGGTGATGTTCTACGACCTGGCCAACTTCAACGCG
CGCAACTGCAAGATATACCTGGGCACGTCGCCGACGCCGCTCTGCGACAAGCCCGTCTACCCGCCGAACAAGTGGATCGG
GCTCTCGCTCGTCAAAGAGACCGTAACTTCGCCGCCGGTGGGGCTGCAAGGCGTCTACTGCCCCAGCAGCGTGCTCTTCT
ACGGCCCCTCCGCCGGACAGCATTGCCCATTTTATTGA------------------------------------------
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>chr3D_1_TraesCS3D01G284300
CCGCCACCGCAGCCCATGAGCGAATTTGCCAACGCCGCCGCCCGCTCTAGATTTAGGGTATATGAGAAAGGAGGTTGAGG
GAGTGCGGGACTGAGACCATGGCGGTCAATACCGGGTCCACATCTTACTCAATCCACCCAAAGTGTTATAAGGGGCGAAA
CCTATCTGACTTGACTAGTTCACGGACTGAGGTTTGTTGGTTTCAATGTTGAGGGACGATTTCTTAACTTTTGTGAGTTT
AGGAACGAAAAATTATAGTACTAAACACTTACTCCAGTTGTGATGTTATTCTGCAATTTTCTCAATCTGGAACATGAGAG
AAGCTTTAAACGGTCAGCTCCCGGATCCATGATTTACGTGTGGCATCACCGACTATCCCTCCGA----GGACGCGTCGTG
CTAGCACCTGACACACCGGAACAGAATCTGACGAAGCAACTTGCCAGGTTAACCATGGCATGTTACTCTGTCCATCTCTG
GCATCCTTTGGTTACTGTACGCATTAATTGCCGAGATT----AACCTATCCGACGGGATGCGAAGCTGCGGACGAAGAAA
GGCGCAACCATCATTGCAGTCACTACGGTGAAGTCAAACGAAGCCGAAGCTCTGCGCTTAACCCAAGCAGCCGCGCGCAT
TCTCACGAACGGACAGATTTCGCTGCACCGAAAACCACATCTTGAAATTTATCATCATATCATCACACTTTCCAAGTGAT
CAATCCCAAGAAAGGAAAAAGTTACCGTTGT---ACAGACAAAATGACAGCAAGCAGACTGAACTTCCGAGACGCCCTCT
GCATTAGCTGTGAATGGAATCTGGTTTGGCCGCGCCGCGCCGCTCGTCCGGTCAACTGGCCACCGGGCAAACAGAGCCCA
CA-CCCCTTATAAATTAGCCCGTGGCCGGGCACTTCTGATCACCCAGTTCATTCTGACTTTAGCT---ATAGTGCTTGTG
CTTATACCACTAGGGATCGACACACCTTCGTTGACAGGAAAATTATTAGTCAGAGATGAGGAGCTACGCAGCTGTAGTCC
GGGCAGCACTACTCGTCCTTGGCGCGCTGCTACTCCCTGCCCACCATGTGATGGCCGACTACTCGGCCATGGCA------
---CCGGCGCCGCCGCCACCGCCTAAGCCGGCCAGTGCCATTTCCATGCCCCCGTTGCCAGCCAATGACACCAACATGTC
GCCG------------CCTGTCCAGCTGGCGCCACCTTTCGTCGTTGTGCAGGGCGTGATCTACTGTAAGTCCTGCAAAT
CCAGGGGCTACAACCGCGGCATGGACGCGTCACCGATCCAAGGTTCGCATTGCCCCTATATATATCTCTCGCCTACTCCG
TCGCCTCGGCATGGGGTAGCTAATTAGCCTGCTCAGTCTTAATCTCATGCGTGCATGCATCCATTCGATCCATAAACGCA
GGCTGACATTATCTCTACTGCCCGTTTTGGTTTTGTCTTTGCAGGTGCAACGGTGAATCTGGTGTGCTACGGGAGGAAGG
TGGTGAACGTGACAGCGACGGTGTCGGACGAGCACGGCTACTTCCTGGTGATGTTCTACGACCTGGCCAACTTCAACGCG
CGCAACTGCAAGATATACCTGGGCACGTCGCCGACGCCGCTCTGCGACAAGCCCGTCTACCCGCCGAACAAGTGGATCGG
GCTCTCGCTCGTCAAAGAGACCGTAACTTCGCCGCCGGTGGGGCTGCAAGGCGTCTACTGCCCCAGCAGCGTGCTCTTCT
ACGGCCCCTCCGCCGGACAGCATTGCCCATTTTATTGACCGCGCCGCCTCGATCCACCTGGTACTAAGTAATAATCAACT
AGTCACC-----------------------TTGGCAGTTTTGCACTTGCAGTGGTTCGTGTTTGTGTAT-----TGTACG
TGTTCCTAGCAGCTTAGATCCGCCAATTTACGTTCAGTTCTTCTAGTTTGTT-GGTTGGTGCAGTTGCAGTGTAGTGCTA
GTATCTTGAGTTTTCAGTGGCCTCCGTTCCCCAC-CA-TAACTATGATTCTTCTGCCAACGTGCATTATTTTAAGCTGTT
TGACATTTACGGCTGTCGGTTGCCACTACACCG-AGATCCACGAGCTTAGATCGAGCTCCAATTCACACTTGAAGTGGGA
ACCTTGGAAGTCAA-GGTAATAGCCACCCTGCGAAAGGGTATATTATACTCCCTCCGTCTCATAATAAGTATCTCAACTA
TGTACTAGTTTGGGTATAAAGTTGTATTAAGTTTAAGACATTTATTTTGGGACGGATGGAGTACCACATTAACTAAATGA
CAGTCGACTGAATTTTAAATTGGGGCCAGTCGATTTTGAGAGTTCACCGGAGTGAGCCGGAGGGATGGAAGGGGCTCGCC
GGAGGGCTACCCCATCTATCTTAAGGTTTAAGGTAAGAGAGGTGATGGACGGCGGTGATGGGGTTTCGCCGGAGAAAAAA
ACTGGGCGTGGGCGGGGCTAGAGGGTGGCCAGGGGCGGCAGCAAGACCGGCGGTGGGGAGCGGTTCCGAAAAGAGCGGGC
GGCGAGGCTGCGCGAAAGCGCCGCCGGCTGCGGGTGGTGCTCGCAGGCGGTTCGGCCGGTGGCCTATGCGGCGGCCTGGG
AAAGGAGAAGAAGCTGGAGGAAGAAGAAGGGCTGCCCATCGTTCAATCTGCATCCAACAGTCATCGACTGACCTAAATTT
AAAAATCAATCGACTGACGTGTAGCCATTCCCATATTATACTGCAAAATGGAGTGCTATGATCTTCC-ATAACGTGCATG
TATACTCAGATCTTCTATAACGTGCTTGTGAG
>chr3B_1
CCGCCACCGCAGCCCATGAGCGAATTTGCCATCGCCGCCGCCCGCTCTAGATTTAGGGTATATGAGAAAGGTGGTCGAGT
GAGTGCAGGACTGGGACCATGGCGGTCAGAACCGGGTCCACATCTTACTCAATCCACCCAAAGCGTTATAAGGGACGAAA
CTTATCTGACTTGACTAGTTCGGGGACTGAGGTTTGTCGGTTTCAATGTTGAGGGACGATTTCTTAACTTTCATGAGTTT
AGGAACGAAAAATTATAGTACCAAACACT-ACTCTAGCTGTGATGTTATTTTGCAATTTTCTCAATCTGGAACATGAGAG
AAGCTTTAAACGGTCAGCTCCCGGATCCATGATTTACGTGTGGCATCACCGACGATCCATCGGA----GGACGCGTCGTG
CTAGCACCTGACACACCGGAACAGAATCTGACGAAGCAACTTGCCAGGTTAACCATGGCATGTTACTCTGTCCAGCTCAG
GCATCCTTTGGTTACTCTACGCATTAATTGCCGGGACTAAACAAACTATCCGACGGCATGCGAAGCTGCTGTCGAAGAAA
GGCGCAACCATCATTGCAGTCACTACGGTGAAGTCAAACGGAGCCGAAGCTCTGCGCTTAACCCAAGCAGCCGCGCGCAT
TCTCACGAACGGACAGATTTCGCTGCACCGAAAACCACATCTTGAAATTTATCATCATATCATCACACTTTCCAAGTGAT
CAATCCCAAGAAAGAAAAAGGTTACCGTTGT---ACAGACAAAATGACAGCAAGCAGACCGAACTTCCGAGACGCCCTCT
GCATTAACTGTGAACGGAATCTGGTTTGGCCGCGG-GCGCAGCTCGTTGGGTCAACTGGCCACCGGGCAAACAGAGCCCA
CGCCCCCTTATAAATTAGCCCGTGGCGGGACACGTCTGATCACCCAGTTCATTCTGACTTTAGCT---ATAGTGCTTGTG
CTTATACCACTAGGGATCGACACACCTTCGTTGACAGGAAAATTATTAGCCAGAGATGAGGAGCTACGCAGCGGTAGTCC
GGGCGGCACTGCTCGTCCTTGGCGCGCTGCTACTCCCTGCCCACCATGTGATGGCCGACTACTCGGCCATGGCA------
---CCG------------CCGCCTAAGCCGGCCAGTGCCATTTCCACGCCCCCGTTGCCAGCCAATGACACGAACATGTC
GCCGTT------GCCGCCTGTCCAGCCGATGCCACCTTTCGTCGTCGTGCAGGGCGTGATCTACTGCAAATCTTGCAAAT
CCAGGGGCTACAACCGCGGCATGGACGCCTCACCGATCCAAGGTTCGCG-------------------TCACCTACTCCG
TCGCCTTGGCATAGAGTAGCTAATTAGCCTGCTCAGTCTTAATCTCATGCGTGCATGCATCCATTCGATCCATGAACGCA
GGCTGACATTATCTCTACTGCCCGTTTTGGTTTTGTCTTTGCAGGTGCAACGGTGAATCTGGTGTGCTACGGGAGGAAGG
TGGTGAACGTGACGGCGACGGTGTCGGACGAGCACGGCTACTTCCTGGTGATGTTCTACGACCTGGCCAACTTCAACGCG
CGCACCTGCAAGCTGTACCTGGGCACGTCGCCGACGCCGCTCTGCGACAAGCCCGTCTACCCGCCGAACAAGTGGATCGG
GCTCTCGCTCGTCAAGGAGACCGTCACCTCGCCGCCGGTGGGGCTGCAGGGCGTCTACTGCCCCACCAGCGTCCTCTTCT
ACGGCCCCTCCGCCGGACAGCATTGCCCATTTTATTGACCGCGCCGCCTCGATCCAGTTGGTACTGAGTAATAATCAACT
AGTCATATGCAGTTGATGG-------ATGATTGACAGTGTTGTGCTTGCAGTGGTGCATATTTGTGCATTTCTGTGTTCG
TGTTCCTAGCAGCTA------GCCAATTTACGTTAAGTTCTTCTAGTTCGTGGGC-TGGTGCAGTTACAGTGTAGCACTA
GTATCTCGAGTTTTGAGTGGCCTCTGTTCCCCTTCCATTAACTATGATTCTTCTGCCAACGTGCATTATTTTAAGCTGTT
TGACATCTAGGGCTGTCGGTTACCACTGCACCGTAGATCCATGAACTTAGATCGAGCTCCAAATCACACTAGAAGTGGGA
ACATTGGAAGTCAAAGGTAATAGCCACCCTGCGAATTGGTATATTATACT------------------------------
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>chr3A_322
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-AGATTTAAACGGTCAGCGCCAGGATCCATGATCTACGTGTGGCATCACCGACAATCCATCCGAGCAGGGACGCGTCGTG
CTAGAACCTGACACACCGGAACAGAATCCGACGAAGCAACC--------------TGGCAGGTTACTCTGTCCATCACAG
GCATCGTTTAGTTACTCTACGCATTAATTGCCGAGACTAAACAAACTACCCGACGGCATGCGAAGCTGCTGCCGAAGAAA
GGCGCAACCATCATCGCAGCAACTACGGTGAAGTCAAATGAAGTGGAAGCTCTGCGCTTAACCCAAGGAGCCGCGCGCAT
TCTCACGAACGGATCGATTTGTCTGCACCGAAAACCACATCTTGAAATTCATCATCATATCATCACACTTTCCAAACGAT
GAATCCCAAGAAAGAAAAAAGTTACCGTTGTAGTACAGACAAAATGACAGCAAGCAGATTGAACTTCCGAGACGCCCTCT
GCATTAACTGTGAACGGTATCTGGTTTGGCCGCGCCGCGCTGCTTGTCAGGTCAACTGGCAACCGGGCAAACAGAGCCCA
CGCCCCCTTATAAATTAGCCCGTGGCGGGACACGTCTGATCACCCAGTCCATTCTGAATTTAGCTAGTATAGTGCTTGTG
CTTATACTACCAGGGATCGATACACCTTGGTTGACAGGAAAATTATTAGTCAGAGATGAGGAGCTCCGCGGCTGTAGTCC
GGGCGGCACTGCTCGTCCTTGGCGCGCTGCTACTCCCTGCCCACCATGTGATGGCCGACTACTCGGCCGTGGCACCGACG
CCCCCG------------CCGCCTAAGCCGGCCAGTGCCATTTCCAAGCCCCCGTTGCCAGCCAATGACACCAACATGTC
GCCGTCCCCGTCGCCGCCTGTCCAGCCGGTGCCACCTTTCGTGGTCGTGCAGGGCGTGATCTACTGCAAGTCATGCAAAT
CCAGGGGCTACAACCGCGGCATGGACGCCTCACCGATCCAAGGTTCGCACTGCCCGTAGATC--TCTCTCGCCTACTCCG
TCGCCTCGGCATGGAGTACCTAATTAACCTGCTCAGTCTTAAACTCATGCGTGCATGCATCCATTCGATCCATAAACGCA
GG-------------------------------------------TGCAACGGTGAATCTGGTGTGCTACGGGAAGAAGG
TGGTGAACGTGACGGCGACGGTGTCGGACGAGCGCGGCTACTTCCTGGTGATGTTCTACGACCTGGCCAACTTCAACGCG
CGCAACTGCAAGCTGTACCTGGGCACGTCGCCGACGCCGCTCTGCGACAAGCCCGTCTACCCGCCGAACAAGTGGATCGG
GCTCTCGCTCGTCAAAGAGACCGTCACCTCGCCGCCGGCGGGGCTGCAGGGCGTCTACTGCCCCACCAGCGTCCTCTTCT
ACGGCCCCTCCGCCGGACAGCATTGCCCATTTTATTGACCGCGCCGCCTCGATCCAGCTGGTACTGAGTAATAATCAACT
AGTCATATGCAGTTGATGGATGATTCATGATTGACAGTGTTGTGCTTGCAGTGGTGCATATTTGTGCATTTATGTGTTCG
TGTTCCTAGCAGCTA------GCCAATTTACGTTAAGTTCTTCTAGTTCGTGGGGTTGGTGCAGTTCCAGTGTAGTGCTA
GTATCTTGAGCTTTCAGTGGCCTCTGTTCCCCTCACA-TAACTATGATTCTTCTGCCAACGTGCATTATTTTAAGCTGTT
TGACATCTACGGCTGTCGGTTACCACTACACCGTAGATCCATGAGCTTAGATCGAGCTCCAAATCACACTAGAAGTGGGA
ATCTTGGAAGTCAAAGGTAATAGCCACCCTGCGAAGTGGTATT-------------------------------------
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-----------------------------------TTATACTGCGAAATGGAGTACTATGATTCTTCTATAACGTGCATG
TATACTCAGATCTTCTATAACGTGCCTGT---
>SNPs
-------------------------------S---------------------------------------S---S---S
------S------S--------------SS---------------------------------S----------S-----
-S-------------------SS--------------S---------------------------------SS-------
---------------------S-------S----S--S------------S-----------------------------
-----------------------------------------------------S----S---------------------
------------------------------------------------------------------------------S-
----------------S-------------------S-------S-----------S------------S-S--------
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--------------S-----------------------------------------------------------------
------S-------S-------------------------S-------S-------------------------------
-S------------------------S--S---S----------------------------------------------
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----S-----S---------------------------------------------------------------------
------SSSSSSSSSSSS----------------------------S---------------------------------
--------------------------S--S---------------S--------------------S-----S-------
----------------------------S--------------------S-----S--S--SSS----------------
--------------S-----------------------------------------------------------------
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-------------S------------------------------------------------------------------
------------S-S-----------------------------------------------------------------
------------------------S--S--------------------S----------------S------S-------
--------------------------------------------------------S--------S--------------
-----SS--------------------------S----S---SS-----------S-S-S------S----------S--
--------------SSSSSSS-------------S-------------S--S--------------S-------------
------------------------S-------S-----------------------------------------------
------S--------------S-------------------S--------------------S-------S---------
-----------------------------------SS-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---------S-------SS-S--------------
-------------------------S---SSS
>forward_379
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---------------------------------------GTGGCATCACCGACTATCCC---------------------
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>reverse_1273
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------------------------------------------------------------------------CTGCAAAT
CCAGGGGCTACA--------------------------------------------------------------------
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>forward_807
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-------------------------------------------------------------------CGAGACGCCCTCT
GCATTAG-------------------------------------------------------------------------
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>reverse_2660
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-------------------GAAGAAGAAGGGCTGCCCAT-----------------------------------------
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