Multiple sequence alignment - TraesCS3D01G283700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G283700 chr3D 100.000 2642 0 0 1 2642 392053360 392056001 0.000000e+00 4879.0
1 TraesCS3D01G283700 chr3B 89.150 1106 58 29 859 1924 511070966 511072049 0.000000e+00 1321.0
2 TraesCS3D01G283700 chr3B 92.070 454 23 9 2195 2640 511072146 511072594 6.210000e-176 627.0
3 TraesCS3D01G283700 chr3B 90.952 420 23 4 1 409 511070353 511070768 3.840000e-153 551.0
4 TraesCS3D01G283700 chr3B 89.888 178 9 7 690 861 511070761 511070935 1.230000e-53 220.0
5 TraesCS3D01G283700 chr3B 82.609 115 1 3 2056 2170 511072055 511072150 1.690000e-12 84.2
6 TraesCS3D01G283700 chr3A 87.968 989 50 30 694 1635 512307656 512308622 0.000000e+00 1103.0
7 TraesCS3D01G283700 chr3A 88.636 572 38 9 2063 2625 512309021 512309574 0.000000e+00 671.0
8 TraesCS3D01G283700 chr3A 90.943 265 15 2 24 279 512307008 512307272 5.410000e-92 348.0
9 TraesCS3D01G283700 chr3A 79.487 273 17 14 1657 1911 512308775 512309026 9.790000e-35 158.0
10 TraesCS3D01G283700 chr3A 90.826 109 9 1 505 612 530439223 530439115 7.620000e-31 145.0
11 TraesCS3D01G283700 chr2B 91.892 111 8 1 505 614 27640712 27640822 1.270000e-33 154.0
12 TraesCS3D01G283700 chr2B 90.991 111 8 2 505 614 163739938 163739829 5.890000e-32 148.0
13 TraesCS3D01G283700 chr1B 91.228 114 8 2 501 613 343437744 343437856 1.270000e-33 154.0
14 TraesCS3D01G283700 chr1B 89.286 112 11 1 505 615 290167135 290167024 3.550000e-29 139.0
15 TraesCS3D01G283700 chr1B 80.000 120 18 5 1918 2036 209993872 209993986 1.690000e-12 84.2
16 TraesCS3D01G283700 chr1B 97.917 48 1 0 1397 1444 596039019 596039066 1.690000e-12 84.2
17 TraesCS3D01G283700 chr4A 91.071 112 9 1 505 615 238045045 238044934 1.640000e-32 150.0
18 TraesCS3D01G283700 chr4A 88.095 84 4 5 1917 1995 513061391 513061309 7.790000e-16 95.3
19 TraesCS3D01G283700 chr6B 91.667 108 8 1 505 611 574523883 574523776 5.890000e-32 148.0
20 TraesCS3D01G283700 chr6B 91.509 106 8 1 505 609 153041912 153042017 7.620000e-31 145.0
21 TraesCS3D01G283700 chr6B 82.517 143 17 7 1921 2059 718774618 718774480 4.620000e-23 119.0
22 TraesCS3D01G283700 chr6B 88.764 89 8 2 601 689 32698375 32698461 1.000000e-19 108.0
23 TraesCS3D01G283700 chr6B 90.000 80 4 3 1988 2066 117589788 117589864 1.670000e-17 100.0
24 TraesCS3D01G283700 chr6B 86.517 89 9 3 598 685 560622066 560621980 7.790000e-16 95.3
25 TraesCS3D01G283700 chr7B 85.906 149 7 11 1921 2059 526430874 526430730 2.120000e-31 147.0
26 TraesCS3D01G283700 chr7B 81.690 142 16 9 1921 2058 643351282 643351147 2.780000e-20 110.0
27 TraesCS3D01G283700 chr7B 91.667 72 6 0 614 685 394831910 394831839 1.670000e-17 100.0
28 TraesCS3D01G283700 chr7B 87.059 85 9 2 601 685 16150463 16150545 7.790000e-16 95.3
29 TraesCS3D01G283700 chr2A 87.705 122 12 3 505 625 533011051 533010932 3.550000e-29 139.0
30 TraesCS3D01G283700 chr2A 88.750 80 6 3 1913 1990 608038582 608038660 7.790000e-16 95.3
31 TraesCS3D01G283700 chr5D 89.873 79 8 0 614 692 447400552 447400474 4.650000e-18 102.0
32 TraesCS3D01G283700 chr5D 80.556 144 17 9 1920 2060 26923867 26924002 1.670000e-17 100.0
33 TraesCS3D01G283700 chr5D 90.000 80 5 1 1982 2061 203315151 203315227 1.670000e-17 100.0
34 TraesCS3D01G283700 chr4B 91.781 73 6 0 614 686 655117824 655117896 4.650000e-18 102.0
35 TraesCS3D01G283700 chr4B 89.873 79 5 3 1982 2060 504163030 504163105 6.020000e-17 99.0
36 TraesCS3D01G283700 chr4B 90.164 61 6 0 436 496 105633956 105633896 2.180000e-11 80.5
37 TraesCS3D01G283700 chr7D 91.667 72 6 0 614 685 518793820 518793749 1.670000e-17 100.0
38 TraesCS3D01G283700 chr7D 90.909 77 2 5 1912 1985 632075257 632075331 6.020000e-17 99.0
39 TraesCS3D01G283700 chr6D 89.610 77 8 0 614 690 94051986 94051910 6.020000e-17 99.0
40 TraesCS3D01G283700 chr7A 87.209 86 9 2 601 686 717441239 717441322 2.160000e-16 97.1
41 TraesCS3D01G283700 chr5B 79.866 149 17 11 1921 2060 271941862 271942006 2.160000e-16 97.1
42 TraesCS3D01G283700 chr5B 82.955 88 14 1 410 496 529387442 529387355 7.840000e-11 78.7
43 TraesCS3D01G283700 chr2D 92.063 63 5 0 434 496 562360391 562360453 3.620000e-14 89.8
44 TraesCS3D01G283700 chr1D 97.917 48 1 0 1397 1444 439305936 439305983 1.690000e-12 84.2
45 TraesCS3D01G283700 chr1A 95.833 48 2 0 1397 1444 535445737 535445784 7.840000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G283700 chr3D 392053360 392056001 2641 False 4879.00 4879 100.0000 1 2642 1 chr3D.!!$F1 2641
1 TraesCS3D01G283700 chr3B 511070353 511072594 2241 False 560.64 1321 88.9338 1 2640 5 chr3B.!!$F1 2639
2 TraesCS3D01G283700 chr3A 512307008 512309574 2566 False 570.00 1103 86.7585 24 2625 4 chr3A.!!$F1 2601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 730 0.034337 GGTCAGACACCGGTAAGCAA 59.966 55.0 6.87 0.0 34.56 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2190 2597 0.036732 ACCATCACACCGCAGATTGT 59.963 50.0 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 2.091541 GATGGATTCCGTTTGCTTCCA 58.908 47.619 0.00 0.00 40.54 3.53
217 226 0.460284 AGCCTGGCGTAATCTTGACG 60.460 55.000 13.96 0.00 43.19 4.35
218 227 0.739813 GCCTGGCGTAATCTTGACGT 60.740 55.000 1.35 0.00 42.31 4.34
396 560 1.233019 CTGCCACCAATGATCGGATC 58.767 55.000 11.07 11.07 0.00 3.36
413 577 7.337184 TGATCGGATCCATGATTAGTAGTACTC 59.663 40.741 13.41 0.00 0.00 2.59
414 578 5.944599 TCGGATCCATGATTAGTAGTACTCC 59.055 44.000 13.41 0.00 0.00 3.85
415 579 5.125739 CGGATCCATGATTAGTAGTACTCCC 59.874 48.000 13.41 0.00 0.00 4.30
418 582 5.145564 TCCATGATTAGTAGTACTCCCACC 58.854 45.833 5.96 0.00 0.00 4.61
419 583 4.899457 CCATGATTAGTAGTACTCCCACCA 59.101 45.833 5.96 0.19 0.00 4.17
421 585 6.295349 CCATGATTAGTAGTACTCCCACCATC 60.295 46.154 5.96 0.00 0.00 3.51
422 586 6.027025 TGATTAGTAGTACTCCCACCATCT 57.973 41.667 5.96 0.00 0.00 2.90
426 590 8.849543 ATTAGTAGTACTCCCACCATCTTAAA 57.150 34.615 5.96 0.00 0.00 1.52
428 592 7.125792 AGTAGTACTCCCACCATCTTAAATG 57.874 40.000 0.00 0.00 0.00 2.32
429 593 6.672657 AGTAGTACTCCCACCATCTTAAATGT 59.327 38.462 0.00 0.00 0.00 2.71
430 594 7.842743 AGTAGTACTCCCACCATCTTAAATGTA 59.157 37.037 0.00 0.00 0.00 2.29
431 595 7.504926 AGTACTCCCACCATCTTAAATGTAA 57.495 36.000 0.00 0.00 0.00 2.41
432 596 7.565680 AGTACTCCCACCATCTTAAATGTAAG 58.434 38.462 0.00 0.00 38.50 2.34
433 597 6.388619 ACTCCCACCATCTTAAATGTAAGT 57.611 37.500 2.53 0.00 38.33 2.24
435 599 7.238710 ACTCCCACCATCTTAAATGTAAGTTT 58.761 34.615 2.53 0.00 38.33 2.66
436 600 7.728532 ACTCCCACCATCTTAAATGTAAGTTTT 59.271 33.333 2.53 0.00 38.33 2.43
437 601 8.485578 TCCCACCATCTTAAATGTAAGTTTTT 57.514 30.769 2.53 0.00 38.33 1.94
438 602 8.581578 TCCCACCATCTTAAATGTAAGTTTTTC 58.418 33.333 2.53 0.00 38.33 2.29
504 668 9.860898 GTGAATCTAAATTCTAAATTGGCAAGT 57.139 29.630 5.96 0.00 41.63 3.16
512 676 8.911247 AATTCTAAATTGGCAAGTTTATCGTC 57.089 30.769 18.63 0.00 0.00 4.20
513 677 7.441890 TTCTAAATTGGCAAGTTTATCGTCA 57.558 32.000 18.63 0.00 0.00 4.35
514 678 7.624360 TCTAAATTGGCAAGTTTATCGTCAT 57.376 32.000 18.63 0.00 0.00 3.06
515 679 8.725405 TCTAAATTGGCAAGTTTATCGTCATA 57.275 30.769 18.63 0.00 0.00 2.15
516 680 9.337396 TCTAAATTGGCAAGTTTATCGTCATAT 57.663 29.630 18.63 0.00 0.00 1.78
517 681 9.599322 CTAAATTGGCAAGTTTATCGTCATATC 57.401 33.333 18.63 0.00 0.00 1.63
518 682 5.651172 TTGGCAAGTTTATCGTCATATCG 57.349 39.130 0.00 0.00 0.00 2.92
519 683 4.055360 TGGCAAGTTTATCGTCATATCGG 58.945 43.478 0.00 0.00 0.00 4.18
520 684 3.120649 GGCAAGTTTATCGTCATATCGGC 60.121 47.826 0.00 0.00 0.00 5.54
521 685 3.741344 GCAAGTTTATCGTCATATCGGCT 59.259 43.478 0.00 0.00 0.00 5.52
522 686 4.376413 GCAAGTTTATCGTCATATCGGCTG 60.376 45.833 0.00 0.00 0.00 4.85
523 687 4.848562 AGTTTATCGTCATATCGGCTGA 57.151 40.909 0.00 0.00 0.00 4.26
524 688 5.392767 AGTTTATCGTCATATCGGCTGAT 57.607 39.130 13.70 13.70 38.67 2.90
525 689 5.784177 AGTTTATCGTCATATCGGCTGATT 58.216 37.500 14.52 0.00 35.99 2.57
526 690 6.223852 AGTTTATCGTCATATCGGCTGATTT 58.776 36.000 14.52 2.44 35.99 2.17
527 691 7.375834 AGTTTATCGTCATATCGGCTGATTTA 58.624 34.615 14.52 0.00 35.99 1.40
528 692 8.035394 AGTTTATCGTCATATCGGCTGATTTAT 58.965 33.333 14.52 0.00 35.99 1.40
529 693 7.987268 TTATCGTCATATCGGCTGATTTATC 57.013 36.000 14.52 2.25 35.99 1.75
530 694 4.412207 TCGTCATATCGGCTGATTTATCG 58.588 43.478 14.52 13.55 35.99 2.92
531 695 3.547868 CGTCATATCGGCTGATTTATCGG 59.452 47.826 14.52 0.00 35.99 4.18
543 707 6.727824 CTGATTTATCGGCCGAATTATCTT 57.272 37.500 34.66 16.71 0.00 2.40
544 708 7.827819 CTGATTTATCGGCCGAATTATCTTA 57.172 36.000 34.66 15.52 0.00 2.10
545 709 8.425577 CTGATTTATCGGCCGAATTATCTTAT 57.574 34.615 34.66 15.05 0.00 1.73
546 710 8.420374 TGATTTATCGGCCGAATTATCTTATC 57.580 34.615 34.66 22.77 0.00 1.75
547 711 6.880822 TTTATCGGCCGAATTATCTTATCG 57.119 37.500 34.66 0.00 36.39 2.92
556 720 6.677027 CGAATTATCTTATCGGTCAGACAC 57.323 41.667 2.17 0.00 33.15 3.67
557 721 5.629849 CGAATTATCTTATCGGTCAGACACC 59.370 44.000 2.17 0.00 42.69 4.16
564 728 4.592426 GGTCAGACACCGGTAAGC 57.408 61.111 6.87 0.00 34.56 3.09
565 729 1.669440 GGTCAGACACCGGTAAGCA 59.331 57.895 6.87 0.00 34.56 3.91
566 730 0.034337 GGTCAGACACCGGTAAGCAA 59.966 55.000 6.87 0.00 34.56 3.91
567 731 1.338769 GGTCAGACACCGGTAAGCAAT 60.339 52.381 6.87 0.00 34.56 3.56
568 732 1.732259 GTCAGACACCGGTAAGCAATG 59.268 52.381 6.87 0.55 0.00 2.82
569 733 1.621317 TCAGACACCGGTAAGCAATGA 59.379 47.619 6.87 3.26 0.00 2.57
570 734 2.037902 TCAGACACCGGTAAGCAATGAA 59.962 45.455 6.87 0.00 0.00 2.57
571 735 3.009723 CAGACACCGGTAAGCAATGAAT 58.990 45.455 6.87 0.00 0.00 2.57
572 736 3.063997 CAGACACCGGTAAGCAATGAATC 59.936 47.826 6.87 0.00 0.00 2.52
573 737 2.006888 ACACCGGTAAGCAATGAATCG 58.993 47.619 6.87 0.00 0.00 3.34
574 738 1.330521 CACCGGTAAGCAATGAATCGG 59.669 52.381 6.87 0.00 41.45 4.18
575 739 0.307760 CCGGTAAGCAATGAATCGGC 59.692 55.000 0.00 0.00 0.00 5.54
576 740 0.307760 CGGTAAGCAATGAATCGGCC 59.692 55.000 0.00 0.00 0.00 6.13
577 741 0.307760 GGTAAGCAATGAATCGGCCG 59.692 55.000 22.12 22.12 0.00 6.13
578 742 1.295792 GTAAGCAATGAATCGGCCGA 58.704 50.000 33.12 33.12 0.00 5.54
579 743 1.873591 GTAAGCAATGAATCGGCCGAT 59.126 47.619 34.60 34.60 36.23 4.18
580 744 1.392589 AAGCAATGAATCGGCCGATT 58.607 45.000 44.86 44.86 46.29 3.34
581 745 1.392589 AGCAATGAATCGGCCGATTT 58.607 45.000 44.15 31.41 43.98 2.17
582 746 2.571212 AGCAATGAATCGGCCGATTTA 58.429 42.857 44.15 40.80 43.98 1.40
583 747 3.149196 AGCAATGAATCGGCCGATTTAT 58.851 40.909 44.15 41.02 43.98 1.40
584 748 3.189287 AGCAATGAATCGGCCGATTTATC 59.811 43.478 41.17 32.78 43.98 1.75
626 790 9.516314 TCTTAAACAGTGATCTACATACATTCG 57.484 33.333 0.00 0.00 0.00 3.34
662 826 9.419297 GTTCATTTAAAATGTCTAAAAGGACCC 57.581 33.333 0.00 0.00 35.54 4.46
663 827 7.822658 TCATTTAAAATGTCTAAAAGGACCCG 58.177 34.615 0.00 0.00 35.54 5.28
664 828 7.449086 TCATTTAAAATGTCTAAAAGGACCCGT 59.551 33.333 0.00 0.00 35.54 5.28
665 829 8.732531 CATTTAAAATGTCTAAAAGGACCCGTA 58.267 33.333 0.00 0.00 35.54 4.02
666 830 8.866970 TTTAAAATGTCTAAAAGGACCCGTAT 57.133 30.769 0.00 0.00 35.54 3.06
667 831 8.866970 TTAAAATGTCTAAAAGGACCCGTATT 57.133 30.769 0.00 0.00 35.54 1.89
668 832 7.770366 AAAATGTCTAAAAGGACCCGTATTT 57.230 32.000 0.00 0.00 35.54 1.40
669 833 8.866970 AAAATGTCTAAAAGGACCCGTATTTA 57.133 30.769 0.00 0.00 35.54 1.40
670 834 8.866970 AAATGTCTAAAAGGACCCGTATTTAA 57.133 30.769 0.00 0.00 35.54 1.52
671 835 8.502105 AATGTCTAAAAGGACCCGTATTTAAG 57.498 34.615 0.00 0.00 35.54 1.85
689 853 3.446442 AAGAACGGAGGGAGTAGTACA 57.554 47.619 2.52 0.00 0.00 2.90
690 854 3.666345 AGAACGGAGGGAGTAGTACAT 57.334 47.619 2.52 0.00 0.00 2.29
691 855 3.978610 AGAACGGAGGGAGTAGTACATT 58.021 45.455 2.52 0.00 0.00 2.71
692 856 5.121380 AGAACGGAGGGAGTAGTACATTA 57.879 43.478 2.52 0.00 0.00 1.90
693 857 5.513233 AGAACGGAGGGAGTAGTACATTAA 58.487 41.667 2.52 0.00 0.00 1.40
694 858 5.593502 AGAACGGAGGGAGTAGTACATTAAG 59.406 44.000 2.52 0.00 0.00 1.85
695 859 4.864726 ACGGAGGGAGTAGTACATTAAGT 58.135 43.478 2.52 0.00 0.00 2.24
696 860 6.006275 ACGGAGGGAGTAGTACATTAAGTA 57.994 41.667 2.52 0.00 0.00 2.24
751 915 2.913777 TCGCTCGCGCTTGTATATAT 57.086 45.000 5.56 0.00 39.59 0.86
752 916 4.034742 TGATCGCTCGCGCTTGTATATATA 59.965 41.667 5.56 0.00 39.59 0.86
753 917 3.677601 TCGCTCGCGCTTGTATATATAC 58.322 45.455 14.86 14.86 39.59 1.47
754 918 2.459324 CGCTCGCGCTTGTATATATACG 59.541 50.000 16.29 7.14 36.06 3.06
755 919 3.677601 GCTCGCGCTTGTATATATACGA 58.322 45.455 16.29 13.94 36.06 3.43
756 920 3.477802 GCTCGCGCTTGTATATATACGAC 59.522 47.826 16.29 8.43 36.06 4.34
757 921 4.007282 TCGCGCTTGTATATATACGACC 57.993 45.455 16.29 6.83 36.06 4.79
760 924 4.618067 CGCGCTTGTATATATACGACCAAA 59.382 41.667 16.29 5.65 36.06 3.28
761 925 5.117440 CGCGCTTGTATATATACGACCAAAA 59.883 40.000 16.29 5.05 36.06 2.44
779 943 5.105595 ACCAAAATAGATTGCAGCTTCTTCC 60.106 40.000 4.08 0.00 0.00 3.46
834 1030 8.786826 TCATGTCGACCAACTTTATTTCTATT 57.213 30.769 14.12 0.00 0.00 1.73
836 1032 9.840427 CATGTCGACCAACTTTATTTCTATTTT 57.160 29.630 14.12 0.00 0.00 1.82
871 1073 7.556635 GGTACTTTATTTCTATTTGACCTGGCT 59.443 37.037 0.00 0.00 0.00 4.75
1003 1205 1.776662 CTTCCCCGTCACAGGATAGA 58.223 55.000 0.00 0.00 30.55 1.98
1004 1206 1.409427 CTTCCCCGTCACAGGATAGAC 59.591 57.143 0.00 0.00 30.55 2.59
1006 1208 0.686441 CCCCGTCACAGGATAGACCA 60.686 60.000 0.00 0.00 42.04 4.02
1007 1209 1.191535 CCCGTCACAGGATAGACCAA 58.808 55.000 0.00 0.00 42.04 3.67
1016 1231 6.092807 GTCACAGGATAGACCAAAAAGATCAC 59.907 42.308 0.00 0.00 42.04 3.06
1033 1248 1.281867 TCACCGAGCTTCCAATCCAAT 59.718 47.619 0.00 0.00 0.00 3.16
1039 1254 2.954989 GAGCTTCCAATCCAATTCCTCC 59.045 50.000 0.00 0.00 0.00 4.30
1041 1256 2.670939 CTTCCAATCCAATTCCTCCCC 58.329 52.381 0.00 0.00 0.00 4.81
1042 1257 1.692534 TCCAATCCAATTCCTCCCCA 58.307 50.000 0.00 0.00 0.00 4.96
1043 1258 1.570501 TCCAATCCAATTCCTCCCCAG 59.429 52.381 0.00 0.00 0.00 4.45
1045 1260 2.381911 CAATCCAATTCCTCCCCAGTG 58.618 52.381 0.00 0.00 0.00 3.66
1046 1261 1.686236 ATCCAATTCCTCCCCAGTGT 58.314 50.000 0.00 0.00 0.00 3.55
1047 1262 2.352561 TCCAATTCCTCCCCAGTGTA 57.647 50.000 0.00 0.00 0.00 2.90
1048 1263 2.638325 TCCAATTCCTCCCCAGTGTAA 58.362 47.619 0.00 0.00 0.00 2.41
1054 1274 4.579647 TTCCTCCCCAGTGTAAAATACC 57.420 45.455 0.00 0.00 0.00 2.73
1495 1731 0.461339 AAAGTCAGTCACCACGCGTT 60.461 50.000 10.22 0.00 0.00 4.84
1544 1780 1.956629 TTCGGCTCATCTTCCCCGTC 61.957 60.000 0.00 0.00 41.38 4.79
1547 1783 1.227002 GCTCATCTTCCCCGTCGTC 60.227 63.158 0.00 0.00 0.00 4.20
1548 1784 1.945354 GCTCATCTTCCCCGTCGTCA 61.945 60.000 0.00 0.00 0.00 4.35
1565 1801 6.905076 CCGTCGTCACCAATCAAATTAATTAG 59.095 38.462 0.01 0.00 0.00 1.73
1567 1803 7.634817 CGTCGTCACCAATCAAATTAATTAGTC 59.365 37.037 0.01 0.00 0.00 2.59
1608 1848 4.353777 TCAGCCAGTAGTGAGTTAGGATT 58.646 43.478 0.00 0.00 0.00 3.01
1610 1850 5.955959 TCAGCCAGTAGTGAGTTAGGATTTA 59.044 40.000 0.00 0.00 0.00 1.40
1677 2060 9.562408 ACTACGAGTATGAGATTCTTCAGATTA 57.438 33.333 0.00 0.00 0.00 1.75
1691 2076 8.624367 TTCTTCAGATTAAACCGTCCATTTTA 57.376 30.769 0.00 0.00 0.00 1.52
1692 2077 8.624367 TCTTCAGATTAAACCGTCCATTTTAA 57.376 30.769 0.00 0.00 33.00 1.52
1721 2107 0.875059 CCGGAGAAGTTTCTGTTGCC 59.125 55.000 0.00 0.00 37.73 4.52
1762 2148 5.337813 GGCTTTTGATCAATCCTGTGGAAAT 60.338 40.000 9.40 0.00 34.34 2.17
1763 2149 6.168389 GCTTTTGATCAATCCTGTGGAAATT 58.832 36.000 9.40 0.00 34.34 1.82
1764 2150 6.652062 GCTTTTGATCAATCCTGTGGAAATTT 59.348 34.615 9.40 0.00 34.34 1.82
1766 2152 8.977267 TTTTGATCAATCCTGTGGAAATTTTT 57.023 26.923 9.40 0.00 34.34 1.94
1885 2288 2.103432 TCAACTAGGCTTCACGGAAACA 59.897 45.455 0.00 0.00 0.00 2.83
1911 2314 5.563475 GCAACAGTTTGTACAGAATGAGCAT 60.563 40.000 19.24 1.64 35.57 3.79
1924 2327 7.829725 ACAGAATGAGCATCTATCATCTACTC 58.170 38.462 0.00 0.00 39.69 2.59
1925 2328 7.093814 ACAGAATGAGCATCTATCATCTACTCC 60.094 40.741 0.00 0.00 39.69 3.85
1926 2329 6.380846 AGAATGAGCATCTATCATCTACTCCC 59.619 42.308 0.00 0.00 36.38 4.30
1927 2330 5.268131 TGAGCATCTATCATCTACTCCCT 57.732 43.478 0.00 0.00 34.92 4.20
1928 2331 5.260424 TGAGCATCTATCATCTACTCCCTC 58.740 45.833 0.00 0.00 34.92 4.30
1929 2332 4.609301 AGCATCTATCATCTACTCCCTCC 58.391 47.826 0.00 0.00 0.00 4.30
1930 2333 3.380004 GCATCTATCATCTACTCCCTCCG 59.620 52.174 0.00 0.00 0.00 4.63
1931 2334 4.594970 CATCTATCATCTACTCCCTCCGT 58.405 47.826 0.00 0.00 0.00 4.69
1932 2335 4.726035 TCTATCATCTACTCCCTCCGTT 57.274 45.455 0.00 0.00 0.00 4.44
1933 2336 4.653868 TCTATCATCTACTCCCTCCGTTC 58.346 47.826 0.00 0.00 0.00 3.95
1934 2337 2.068834 TCATCTACTCCCTCCGTTCC 57.931 55.000 0.00 0.00 0.00 3.62
1935 2338 1.569548 TCATCTACTCCCTCCGTTCCT 59.430 52.381 0.00 0.00 0.00 3.36
1936 2339 2.781757 TCATCTACTCCCTCCGTTCCTA 59.218 50.000 0.00 0.00 0.00 2.94
1937 2340 3.203710 TCATCTACTCCCTCCGTTCCTAA 59.796 47.826 0.00 0.00 0.00 2.69
1938 2341 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1939 2342 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1940 2343 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1941 2344 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
1942 2345 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
1943 2346 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
1944 2347 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1945 2348 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1946 2349 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1947 2350 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1948 2351 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1949 2352 8.006564 TCCCTCCGTTCCTAAATATAAGTCTTA 58.993 37.037 0.00 0.00 0.00 2.10
1950 2353 8.813951 CCCTCCGTTCCTAAATATAAGTCTTAT 58.186 37.037 9.98 9.98 0.00 1.73
1968 2371 9.757227 AAGTCTTATAGAGATTTCACTATGCAC 57.243 33.333 7.52 2.97 36.61 4.57
1969 2372 8.364142 AGTCTTATAGAGATTTCACTATGCACC 58.636 37.037 7.52 0.00 36.61 5.01
1970 2373 8.144478 GTCTTATAGAGATTTCACTATGCACCA 58.856 37.037 7.52 0.00 36.61 4.17
1971 2374 8.144478 TCTTATAGAGATTTCACTATGCACCAC 58.856 37.037 7.52 0.00 33.08 4.16
1972 2375 4.558226 AGAGATTTCACTATGCACCACA 57.442 40.909 0.00 0.00 0.00 4.17
1973 2376 4.256920 AGAGATTTCACTATGCACCACAC 58.743 43.478 0.00 0.00 0.00 3.82
1974 2377 4.019860 AGAGATTTCACTATGCACCACACT 60.020 41.667 0.00 0.00 0.00 3.55
1975 2378 5.187772 AGAGATTTCACTATGCACCACACTA 59.812 40.000 0.00 0.00 0.00 2.74
1976 2379 5.423015 AGATTTCACTATGCACCACACTAG 58.577 41.667 0.00 0.00 0.00 2.57
1977 2380 3.610040 TTCACTATGCACCACACTAGG 57.390 47.619 0.00 0.00 0.00 3.02
1978 2381 2.815158 TCACTATGCACCACACTAGGA 58.185 47.619 0.00 0.00 0.00 2.94
1979 2382 3.374764 TCACTATGCACCACACTAGGAT 58.625 45.455 0.00 0.00 0.00 3.24
1980 2383 3.132824 TCACTATGCACCACACTAGGATG 59.867 47.826 0.00 0.00 0.00 3.51
1981 2384 3.107601 ACTATGCACCACACTAGGATGT 58.892 45.455 0.00 0.00 0.00 3.06
1982 2385 3.519510 ACTATGCACCACACTAGGATGTT 59.480 43.478 0.00 0.00 0.00 2.71
1983 2386 2.949177 TGCACCACACTAGGATGTTT 57.051 45.000 0.00 0.00 0.00 2.83
1984 2387 4.568072 ATGCACCACACTAGGATGTTTA 57.432 40.909 0.00 0.00 0.00 2.01
1985 2388 3.670625 TGCACCACACTAGGATGTTTAC 58.329 45.455 0.00 0.00 0.00 2.01
1986 2389 3.071747 TGCACCACACTAGGATGTTTACA 59.928 43.478 0.00 0.00 0.00 2.41
1987 2390 3.435671 GCACCACACTAGGATGTTTACAC 59.564 47.826 0.00 0.00 0.00 2.90
1988 2391 4.637276 CACCACACTAGGATGTTTACACA 58.363 43.478 0.00 0.00 37.31 3.72
1990 2393 5.705441 CACCACACTAGGATGTTTACACATT 59.295 40.000 0.00 0.00 44.22 2.71
1991 2394 6.206634 CACCACACTAGGATGTTTACACATTT 59.793 38.462 0.00 0.00 44.22 2.32
1992 2395 6.775629 ACCACACTAGGATGTTTACACATTTT 59.224 34.615 0.00 0.00 44.22 1.82
1993 2396 7.083858 CCACACTAGGATGTTTACACATTTTG 58.916 38.462 0.00 0.00 44.22 2.44
1994 2397 7.083858 CACACTAGGATGTTTACACATTTTGG 58.916 38.462 0.00 0.00 44.22 3.28
1995 2398 6.775629 ACACTAGGATGTTTACACATTTTGGT 59.224 34.615 0.00 0.00 44.22 3.67
1996 2399 7.040686 ACACTAGGATGTTTACACATTTTGGTC 60.041 37.037 0.00 0.00 44.22 4.02
1997 2400 5.722021 AGGATGTTTACACATTTTGGTCC 57.278 39.130 0.00 0.00 44.22 4.46
1998 2401 4.217550 AGGATGTTTACACATTTTGGTCCG 59.782 41.667 0.00 0.00 44.22 4.79
1999 2402 4.022676 GGATGTTTACACATTTTGGTCCGT 60.023 41.667 0.00 0.00 44.22 4.69
2000 2403 5.181622 GGATGTTTACACATTTTGGTCCGTA 59.818 40.000 0.00 0.00 44.22 4.02
2001 2404 6.127842 GGATGTTTACACATTTTGGTCCGTAT 60.128 38.462 0.00 0.00 44.22 3.06
2002 2405 6.003234 TGTTTACACATTTTGGTCCGTATG 57.997 37.500 0.00 0.00 0.00 2.39
2003 2406 5.531659 TGTTTACACATTTTGGTCCGTATGT 59.468 36.000 0.00 0.00 0.00 2.29
2004 2407 6.709397 TGTTTACACATTTTGGTCCGTATGTA 59.291 34.615 3.75 0.00 30.53 2.29
2005 2408 6.971527 TTACACATTTTGGTCCGTATGTAG 57.028 37.500 3.75 2.76 30.53 2.74
2006 2409 4.901868 ACACATTTTGGTCCGTATGTAGT 58.098 39.130 3.75 3.21 30.53 2.73
2007 2410 4.933400 ACACATTTTGGTCCGTATGTAGTC 59.067 41.667 3.75 0.00 30.53 2.59
2008 2411 4.331717 CACATTTTGGTCCGTATGTAGTCC 59.668 45.833 3.75 0.00 30.53 3.85
2009 2412 4.020039 ACATTTTGGTCCGTATGTAGTCCA 60.020 41.667 2.45 0.00 29.93 4.02
2010 2413 4.829872 TTTTGGTCCGTATGTAGTCCAT 57.170 40.909 0.00 0.00 37.58 3.41
2011 2414 5.936187 TTTTGGTCCGTATGTAGTCCATA 57.064 39.130 0.00 0.00 34.86 2.74
2012 2415 5.524971 TTTGGTCCGTATGTAGTCCATAG 57.475 43.478 0.00 0.00 36.71 2.23
2013 2416 4.174704 TGGTCCGTATGTAGTCCATAGT 57.825 45.455 0.00 0.00 36.71 2.12
2014 2417 3.887110 TGGTCCGTATGTAGTCCATAGTG 59.113 47.826 0.00 0.00 36.71 2.74
2015 2418 4.139786 GGTCCGTATGTAGTCCATAGTGA 58.860 47.826 0.00 0.00 36.71 3.41
2016 2419 4.581824 GGTCCGTATGTAGTCCATAGTGAA 59.418 45.833 0.00 0.00 36.71 3.18
2017 2420 5.068198 GGTCCGTATGTAGTCCATAGTGAAA 59.932 44.000 0.00 0.00 36.71 2.69
2018 2421 6.239232 GGTCCGTATGTAGTCCATAGTGAAAT 60.239 42.308 0.00 0.00 36.71 2.17
2019 2422 6.862090 GTCCGTATGTAGTCCATAGTGAAATC 59.138 42.308 0.00 0.00 36.71 2.17
2020 2423 6.776116 TCCGTATGTAGTCCATAGTGAAATCT 59.224 38.462 0.00 0.00 36.71 2.40
2021 2424 7.040617 TCCGTATGTAGTCCATAGTGAAATCTC 60.041 40.741 0.00 0.00 36.71 2.75
2022 2425 7.040340 CCGTATGTAGTCCATAGTGAAATCTCT 60.040 40.741 0.00 0.00 36.71 3.10
2023 2426 9.000486 CGTATGTAGTCCATAGTGAAATCTCTA 58.000 37.037 0.00 0.00 36.71 2.43
2025 2428 7.260558 TGTAGTCCATAGTGAAATCTCTACG 57.739 40.000 0.00 0.00 0.00 3.51
2026 2429 7.052248 TGTAGTCCATAGTGAAATCTCTACGA 58.948 38.462 0.00 0.00 0.00 3.43
2027 2430 7.555195 TGTAGTCCATAGTGAAATCTCTACGAA 59.445 37.037 0.00 0.00 0.00 3.85
2028 2431 7.033530 AGTCCATAGTGAAATCTCTACGAAG 57.966 40.000 0.00 0.00 0.00 3.79
2029 2432 6.829298 AGTCCATAGTGAAATCTCTACGAAGA 59.171 38.462 0.00 0.00 0.00 2.87
2030 2433 6.913673 GTCCATAGTGAAATCTCTACGAAGAC 59.086 42.308 0.00 0.00 0.00 3.01
2031 2434 6.829298 TCCATAGTGAAATCTCTACGAAGACT 59.171 38.462 0.00 0.00 0.00 3.24
2032 2435 7.339721 TCCATAGTGAAATCTCTACGAAGACTT 59.660 37.037 0.00 0.00 0.00 3.01
2033 2436 8.622157 CCATAGTGAAATCTCTACGAAGACTTA 58.378 37.037 0.00 0.00 0.00 2.24
2037 2440 9.398538 AGTGAAATCTCTACGAAGACTTATACT 57.601 33.333 0.00 0.00 0.00 2.12
2044 2447 8.986847 TCTCTACGAAGACTTATACTATTTCGG 58.013 37.037 8.92 0.00 41.01 4.30
2045 2448 8.893219 TCTACGAAGACTTATACTATTTCGGA 57.107 34.615 8.92 0.00 41.01 4.55
2046 2449 9.330063 TCTACGAAGACTTATACTATTTCGGAA 57.670 33.333 8.92 0.00 41.01 4.30
2047 2450 9.379811 CTACGAAGACTTATACTATTTCGGAAC 57.620 37.037 8.92 0.00 41.01 3.62
2084 2488 1.202758 AGCACGAAAAGGTCCATGACA 60.203 47.619 0.00 0.00 33.68 3.58
2111 2515 7.545265 TGAAGGAAAAATCTTTATTCAATGGCG 59.455 33.333 0.00 0.00 31.92 5.69
2117 2521 4.355543 TCTTTATTCAATGGCGCTGAAC 57.644 40.909 12.16 0.00 35.70 3.18
2118 2522 3.128589 TCTTTATTCAATGGCGCTGAACC 59.871 43.478 12.16 0.00 35.70 3.62
2182 2589 4.939271 CATTTCATGCTACAATGGATGCA 58.061 39.130 0.00 0.00 39.83 3.96
2186 2593 2.336945 TGCTACAATGGATGCAGGAG 57.663 50.000 0.00 0.00 0.00 3.69
2188 2595 2.216898 GCTACAATGGATGCAGGAGTC 58.783 52.381 0.00 0.00 0.00 3.36
2190 2597 0.904649 ACAATGGATGCAGGAGTCGA 59.095 50.000 0.00 0.00 0.00 4.20
2202 2609 1.078759 GGAGTCGACAATCTGCGGTG 61.079 60.000 19.50 0.00 0.00 4.94
2220 2627 3.004862 GGTGTGATGGTTTTACCGGTAG 58.995 50.000 15.20 0.00 42.58 3.18
2228 2635 5.391312 TGGTTTTACCGGTAGTACTCTTC 57.609 43.478 15.20 5.13 42.58 2.87
2237 2644 5.163713 ACCGGTAGTACTCTTCGTTATTGAC 60.164 44.000 4.49 0.00 0.00 3.18
2304 2711 5.555017 TGAGATTCTCTTTTGTGAAGGAGG 58.445 41.667 14.54 0.00 38.95 4.30
2306 2713 5.946486 AGATTCTCTTTTGTGAAGGAGGTT 58.054 37.500 0.00 0.00 38.95 3.50
2329 2741 2.866156 GCAAGCAAACTGGAAGGAAAAC 59.134 45.455 0.00 0.00 39.30 2.43
2361 2776 4.706842 TTAGGCCCAGAAACATCTATCC 57.293 45.455 0.00 0.00 0.00 2.59
2382 2798 3.181491 CCTGTGAAAGCCGAAAGACAAAA 60.181 43.478 0.00 0.00 0.00 2.44
2387 2803 0.387239 AGCCGAAAGACAAAATGCGC 60.387 50.000 0.00 0.00 0.00 6.09
2588 3004 0.178950 TCGAGAGGGATCTGGATGGG 60.179 60.000 0.00 0.00 0.00 4.00
2640 3057 2.095314 CACATAATTGCCAGTTGCGACA 60.095 45.455 6.90 0.00 45.60 4.35
2641 3058 2.556189 ACATAATTGCCAGTTGCGACAA 59.444 40.909 6.90 0.00 45.60 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.781595 ATCGGACCGGTTGCAGTCAC 62.782 60.000 15.25 0.00 34.58 3.67
13 14 2.579657 ATCGGACCGGTTGCAGTCA 61.580 57.895 15.25 0.00 34.58 3.41
107 108 1.075659 GCCTTTGGTCCTCTGGCTT 59.924 57.895 10.85 0.00 40.36 4.35
217 226 4.105486 GCGAGATCCCATTTTTAAAGCAC 58.895 43.478 0.00 0.00 0.00 4.40
218 227 3.181501 CGCGAGATCCCATTTTTAAAGCA 60.182 43.478 0.00 0.00 0.00 3.91
311 475 7.791029 AGATTTACAAACAAGGTGGTGAAATT 58.209 30.769 0.00 0.00 0.00 1.82
344 508 4.030216 TGCCACATACACCTTCAGATAGA 58.970 43.478 0.00 0.00 0.00 1.98
371 535 0.323725 ATCATTGGTGGCAGGTGACC 60.324 55.000 0.00 0.00 0.00 4.02
396 560 4.899457 TGGTGGGAGTACTACTAATCATGG 59.101 45.833 4.77 0.00 0.00 3.66
413 577 8.585018 AGAAAAACTTACATTTAAGATGGTGGG 58.415 33.333 5.64 0.00 37.49 4.61
478 642 9.860898 ACTTGCCAATTTAGAATTTAGATTCAC 57.139 29.630 8.56 0.00 43.35 3.18
487 651 8.519526 TGACGATAAACTTGCCAATTTAGAATT 58.480 29.630 0.00 0.00 0.00 2.17
488 652 8.050778 TGACGATAAACTTGCCAATTTAGAAT 57.949 30.769 0.00 0.00 0.00 2.40
490 654 7.624360 ATGACGATAAACTTGCCAATTTAGA 57.376 32.000 0.00 0.00 0.00 2.10
491 655 9.599322 GATATGACGATAAACTTGCCAATTTAG 57.401 33.333 0.00 0.00 0.00 1.85
493 657 7.132213 CGATATGACGATAAACTTGCCAATTT 58.868 34.615 0.00 0.00 35.09 1.82
494 658 6.293407 CCGATATGACGATAAACTTGCCAATT 60.293 38.462 0.00 0.00 35.09 2.32
496 660 4.509970 CCGATATGACGATAAACTTGCCAA 59.490 41.667 0.00 0.00 35.09 4.52
498 662 3.120649 GCCGATATGACGATAAACTTGCC 60.121 47.826 0.00 0.00 35.09 4.52
499 663 3.741344 AGCCGATATGACGATAAACTTGC 59.259 43.478 0.00 0.00 35.09 4.01
500 664 4.982295 TCAGCCGATATGACGATAAACTTG 59.018 41.667 0.00 0.00 35.09 3.16
502 666 4.848562 TCAGCCGATATGACGATAAACT 57.151 40.909 0.00 0.00 35.09 2.66
503 667 6.467723 AAATCAGCCGATATGACGATAAAC 57.532 37.500 0.00 0.00 35.09 2.01
504 668 7.220108 CGATAAATCAGCCGATATGACGATAAA 59.780 37.037 0.00 0.00 35.09 1.40
505 669 6.691388 CGATAAATCAGCCGATATGACGATAA 59.309 38.462 0.00 0.00 35.09 1.75
506 670 6.199393 CGATAAATCAGCCGATATGACGATA 58.801 40.000 0.00 0.00 35.09 2.92
507 671 5.037385 CGATAAATCAGCCGATATGACGAT 58.963 41.667 0.00 0.00 35.09 3.73
508 672 4.412207 CGATAAATCAGCCGATATGACGA 58.588 43.478 0.00 0.00 35.09 4.20
509 673 3.547868 CCGATAAATCAGCCGATATGACG 59.452 47.826 0.00 0.00 0.00 4.35
510 674 3.307242 GCCGATAAATCAGCCGATATGAC 59.693 47.826 0.00 0.00 0.00 3.06
511 675 3.521560 GCCGATAAATCAGCCGATATGA 58.478 45.455 0.00 0.00 0.00 2.15
512 676 2.609459 GGCCGATAAATCAGCCGATATG 59.391 50.000 1.56 0.00 40.23 1.78
513 677 2.906354 GGCCGATAAATCAGCCGATAT 58.094 47.619 1.56 0.00 40.23 1.63
514 678 2.380084 GGCCGATAAATCAGCCGATA 57.620 50.000 1.56 0.00 40.23 2.92
515 679 3.233355 GGCCGATAAATCAGCCGAT 57.767 52.632 1.56 0.00 40.23 4.18
516 680 4.771127 GGCCGATAAATCAGCCGA 57.229 55.556 1.56 0.00 40.23 5.54
518 682 1.523758 ATTCGGCCGATAAATCAGCC 58.476 50.000 31.56 7.08 44.93 4.85
519 683 4.631813 AGATAATTCGGCCGATAAATCAGC 59.368 41.667 31.56 8.85 0.00 4.26
520 684 6.727824 AAGATAATTCGGCCGATAAATCAG 57.272 37.500 31.56 0.00 0.00 2.90
521 685 7.222031 CGATAAGATAATTCGGCCGATAAATCA 59.778 37.037 31.56 13.91 0.00 2.57
522 686 7.306632 CCGATAAGATAATTCGGCCGATAAATC 60.307 40.741 31.56 27.50 45.04 2.17
523 687 6.479001 CCGATAAGATAATTCGGCCGATAAAT 59.521 38.462 31.56 21.46 45.04 1.40
524 688 5.808540 CCGATAAGATAATTCGGCCGATAAA 59.191 40.000 31.56 15.71 45.04 1.40
525 689 5.345702 CCGATAAGATAATTCGGCCGATAA 58.654 41.667 31.56 16.60 45.04 1.75
526 690 4.928601 CCGATAAGATAATTCGGCCGATA 58.071 43.478 31.56 20.27 45.04 2.92
527 691 3.782046 CCGATAAGATAATTCGGCCGAT 58.218 45.455 31.56 18.47 45.04 4.18
528 692 3.226346 CCGATAAGATAATTCGGCCGA 57.774 47.619 27.28 27.28 45.04 5.54
533 697 5.629849 GGTGTCTGACCGATAAGATAATTCG 59.370 44.000 5.17 0.00 34.02 3.34
547 711 0.034337 TTGCTTACCGGTGTCTGACC 59.966 55.000 19.93 0.00 42.07 4.02
548 712 1.732259 CATTGCTTACCGGTGTCTGAC 59.268 52.381 19.93 0.00 0.00 3.51
549 713 1.621317 TCATTGCTTACCGGTGTCTGA 59.379 47.619 19.93 8.57 0.00 3.27
550 714 2.093306 TCATTGCTTACCGGTGTCTG 57.907 50.000 19.93 6.23 0.00 3.51
551 715 2.851263 TTCATTGCTTACCGGTGTCT 57.149 45.000 19.93 0.00 0.00 3.41
552 716 2.030457 CGATTCATTGCTTACCGGTGTC 59.970 50.000 19.93 6.48 0.00 3.67
553 717 2.006888 CGATTCATTGCTTACCGGTGT 58.993 47.619 19.93 0.00 0.00 4.16
554 718 1.330521 CCGATTCATTGCTTACCGGTG 59.669 52.381 19.93 1.47 0.00 4.94
555 719 1.663695 CCGATTCATTGCTTACCGGT 58.336 50.000 13.98 13.98 0.00 5.28
556 720 0.307760 GCCGATTCATTGCTTACCGG 59.692 55.000 0.00 0.00 38.58 5.28
557 721 0.307760 GGCCGATTCATTGCTTACCG 59.692 55.000 0.00 0.00 0.00 4.02
558 722 0.307760 CGGCCGATTCATTGCTTACC 59.692 55.000 24.07 0.00 0.00 2.85
559 723 1.295792 TCGGCCGATTCATTGCTTAC 58.704 50.000 27.28 0.00 0.00 2.34
560 724 2.254546 ATCGGCCGATTCATTGCTTA 57.745 45.000 34.60 5.94 0.00 3.09
561 725 1.392589 AATCGGCCGATTCATTGCTT 58.607 45.000 40.69 22.32 40.44 3.91
562 726 1.392589 AAATCGGCCGATTCATTGCT 58.607 45.000 44.07 29.21 43.26 3.91
563 727 3.492313 GATAAATCGGCCGATTCATTGC 58.508 45.455 44.07 29.26 43.26 3.56
564 728 3.736213 CGATAAATCGGCCGATTCATTG 58.264 45.455 44.07 36.23 45.93 2.82
589 753 9.838339 AGATCACTGTTTAAGATATTTTCCGAT 57.162 29.630 0.00 0.00 0.00 4.18
600 764 9.516314 CGAATGTATGTAGATCACTGTTTAAGA 57.484 33.333 0.00 0.00 0.00 2.10
601 765 9.302345 ACGAATGTATGTAGATCACTGTTTAAG 57.698 33.333 0.00 0.00 0.00 1.85
636 800 9.419297 GGGTCCTTTTAGACATTTTAAATGAAC 57.581 33.333 22.53 15.25 38.59 3.18
637 801 8.301002 CGGGTCCTTTTAGACATTTTAAATGAA 58.699 33.333 22.53 5.57 38.59 2.57
638 802 7.449086 ACGGGTCCTTTTAGACATTTTAAATGA 59.551 33.333 22.53 0.00 38.59 2.57
639 803 7.599171 ACGGGTCCTTTTAGACATTTTAAATG 58.401 34.615 15.25 15.25 38.59 2.32
640 804 7.770366 ACGGGTCCTTTTAGACATTTTAAAT 57.230 32.000 0.00 0.00 38.59 1.40
641 805 8.866970 ATACGGGTCCTTTTAGACATTTTAAA 57.133 30.769 0.00 0.00 38.59 1.52
642 806 8.866970 AATACGGGTCCTTTTAGACATTTTAA 57.133 30.769 0.00 0.00 38.59 1.52
643 807 8.866970 AAATACGGGTCCTTTTAGACATTTTA 57.133 30.769 0.00 0.00 38.59 1.52
644 808 7.770366 AAATACGGGTCCTTTTAGACATTTT 57.230 32.000 0.00 0.00 38.59 1.82
645 809 8.866970 TTAAATACGGGTCCTTTTAGACATTT 57.133 30.769 0.00 0.00 38.59 2.32
646 810 8.323567 TCTTAAATACGGGTCCTTTTAGACATT 58.676 33.333 0.00 0.00 38.59 2.71
647 811 7.854337 TCTTAAATACGGGTCCTTTTAGACAT 58.146 34.615 0.00 0.00 38.59 3.06
648 812 7.243604 TCTTAAATACGGGTCCTTTTAGACA 57.756 36.000 0.00 0.00 38.59 3.41
649 813 7.201470 CGTTCTTAAATACGGGTCCTTTTAGAC 60.201 40.741 2.05 0.00 34.30 2.59
650 814 6.813152 CGTTCTTAAATACGGGTCCTTTTAGA 59.187 38.462 2.05 0.00 34.30 2.10
651 815 6.997222 CGTTCTTAAATACGGGTCCTTTTAG 58.003 40.000 2.05 0.00 34.30 1.85
652 816 6.966435 CGTTCTTAAATACGGGTCCTTTTA 57.034 37.500 2.05 0.00 34.30 1.52
653 817 5.868043 CGTTCTTAAATACGGGTCCTTTT 57.132 39.130 2.05 0.00 34.30 2.27
662 826 4.382345 ACTCCCTCCGTTCTTAAATACG 57.618 45.455 2.85 2.85 37.50 3.06
663 827 6.462552 ACTACTCCCTCCGTTCTTAAATAC 57.537 41.667 0.00 0.00 0.00 1.89
664 828 7.118723 TGTACTACTCCCTCCGTTCTTAAATA 58.881 38.462 0.00 0.00 0.00 1.40
665 829 5.954150 TGTACTACTCCCTCCGTTCTTAAAT 59.046 40.000 0.00 0.00 0.00 1.40
666 830 5.324409 TGTACTACTCCCTCCGTTCTTAAA 58.676 41.667 0.00 0.00 0.00 1.52
667 831 4.922206 TGTACTACTCCCTCCGTTCTTAA 58.078 43.478 0.00 0.00 0.00 1.85
668 832 4.574674 TGTACTACTCCCTCCGTTCTTA 57.425 45.455 0.00 0.00 0.00 2.10
669 833 3.446442 TGTACTACTCCCTCCGTTCTT 57.554 47.619 0.00 0.00 0.00 2.52
670 834 3.666345 ATGTACTACTCCCTCCGTTCT 57.334 47.619 0.00 0.00 0.00 3.01
671 835 5.359292 ACTTAATGTACTACTCCCTCCGTTC 59.641 44.000 0.00 0.00 0.00 3.95
693 857 9.807921 TCTATTTTCTTTCTTCCATTTGGTACT 57.192 29.630 0.00 0.00 36.34 2.73
695 859 9.243105 CCTCTATTTTCTTTCTTCCATTTGGTA 57.757 33.333 0.00 0.00 36.34 3.25
696 860 7.179160 CCCTCTATTTTCTTTCTTCCATTTGGT 59.821 37.037 0.00 0.00 36.34 3.67
697 861 7.397192 TCCCTCTATTTTCTTTCTTCCATTTGG 59.603 37.037 0.00 0.00 0.00 3.28
698 862 8.353423 TCCCTCTATTTTCTTTCTTCCATTTG 57.647 34.615 0.00 0.00 0.00 2.32
751 915 4.513442 AGCTGCAATCTATTTTGGTCGTA 58.487 39.130 1.02 0.00 0.00 3.43
752 916 3.347216 AGCTGCAATCTATTTTGGTCGT 58.653 40.909 1.02 0.00 0.00 4.34
753 917 4.095483 AGAAGCTGCAATCTATTTTGGTCG 59.905 41.667 1.02 0.00 0.00 4.79
754 918 5.573337 AGAAGCTGCAATCTATTTTGGTC 57.427 39.130 1.02 0.00 0.00 4.02
755 919 5.105595 GGAAGAAGCTGCAATCTATTTTGGT 60.106 40.000 1.02 0.00 0.00 3.67
756 920 5.126707 AGGAAGAAGCTGCAATCTATTTTGG 59.873 40.000 1.02 0.00 0.00 3.28
757 921 6.205101 AGGAAGAAGCTGCAATCTATTTTG 57.795 37.500 1.02 0.00 0.00 2.44
760 924 7.944729 TTAAAGGAAGAAGCTGCAATCTATT 57.055 32.000 1.02 2.64 0.00 1.73
761 925 7.944729 TTTAAAGGAAGAAGCTGCAATCTAT 57.055 32.000 1.02 0.00 0.00 1.98
842 1038 9.449719 CAGGTCAAATAGAAATAAAGTACCACT 57.550 33.333 0.00 0.00 0.00 4.00
843 1039 8.674607 CCAGGTCAAATAGAAATAAAGTACCAC 58.325 37.037 0.00 0.00 0.00 4.16
844 1040 7.338449 GCCAGGTCAAATAGAAATAAAGTACCA 59.662 37.037 0.00 0.00 0.00 3.25
848 1044 6.316390 CGAGCCAGGTCAAATAGAAATAAAGT 59.684 38.462 0.00 0.00 0.00 2.66
849 1045 6.238484 CCGAGCCAGGTCAAATAGAAATAAAG 60.238 42.308 0.00 0.00 0.00 1.85
850 1046 5.588648 CCGAGCCAGGTCAAATAGAAATAAA 59.411 40.000 0.00 0.00 0.00 1.40
853 1049 3.054361 ACCGAGCCAGGTCAAATAGAAAT 60.054 43.478 0.00 0.00 41.46 2.17
854 1050 2.304761 ACCGAGCCAGGTCAAATAGAAA 59.695 45.455 0.00 0.00 41.46 2.52
855 1051 1.906574 ACCGAGCCAGGTCAAATAGAA 59.093 47.619 0.00 0.00 41.46 2.10
922 1124 1.517913 GTAGCTTCCCACGTACGGC 60.518 63.158 21.06 11.91 0.00 5.68
1003 1205 2.568623 AGCTCGGTGATCTTTTTGGT 57.431 45.000 0.00 0.00 0.00 3.67
1004 1206 2.162408 GGAAGCTCGGTGATCTTTTTGG 59.838 50.000 0.00 0.00 0.00 3.28
1006 1208 3.140325 TGGAAGCTCGGTGATCTTTTT 57.860 42.857 0.00 0.00 0.00 1.94
1007 1209 2.859165 TGGAAGCTCGGTGATCTTTT 57.141 45.000 0.00 0.00 0.00 2.27
1016 1231 1.678101 GGAATTGGATTGGAAGCTCGG 59.322 52.381 0.00 0.00 0.00 4.63
1033 1248 4.018779 CAGGTATTTTACACTGGGGAGGAA 60.019 45.833 0.00 0.00 0.00 3.36
1039 1254 1.400494 GCGCAGGTATTTTACACTGGG 59.600 52.381 0.30 0.00 39.98 4.45
1041 1256 1.996898 TCGCGCAGGTATTTTACACTG 59.003 47.619 8.75 0.00 33.16 3.66
1042 1257 2.268298 CTCGCGCAGGTATTTTACACT 58.732 47.619 8.75 0.00 0.00 3.55
1043 1258 1.267383 GCTCGCGCAGGTATTTTACAC 60.267 52.381 8.75 0.00 35.78 2.90
1045 1260 1.003851 TGCTCGCGCAGGTATTTTAC 58.996 50.000 8.75 0.00 42.25 2.01
1046 1261 3.444751 TGCTCGCGCAGGTATTTTA 57.555 47.368 8.75 0.00 42.25 1.52
1047 1262 4.294523 TGCTCGCGCAGGTATTTT 57.705 50.000 8.75 0.00 42.25 1.82
1319 1548 1.918800 CTTCCCCTCCGACCACCTT 60.919 63.158 0.00 0.00 0.00 3.50
1495 1731 1.595929 GGCCAACACCGTCGAGAAA 60.596 57.895 0.00 0.00 0.00 2.52
1544 1780 8.122952 GGAGACTAATTAATTTGATTGGTGACG 58.877 37.037 15.21 0.00 29.78 4.35
1547 1783 8.525290 AGGGAGACTAATTAATTTGATTGGTG 57.475 34.615 15.21 0.00 29.78 4.17
1548 1784 8.971073 CAAGGGAGACTAATTAATTTGATTGGT 58.029 33.333 15.21 3.11 31.91 3.67
1565 1801 1.909700 TTGCATCAACCAAGGGAGAC 58.090 50.000 0.00 0.00 0.00 3.36
1567 1803 2.827322 TGATTTGCATCAACCAAGGGAG 59.173 45.455 0.00 0.00 36.41 4.30
1633 1878 6.667370 TCGTAGTACAAACGTGAAATCACTA 58.333 36.000 17.05 0.00 44.34 2.74
1634 1879 5.522456 TCGTAGTACAAACGTGAAATCACT 58.478 37.500 17.05 0.00 44.34 3.41
1635 1880 5.400485 ACTCGTAGTACAAACGTGAAATCAC 59.600 40.000 21.78 3.43 41.08 3.06
1636 1881 5.522456 ACTCGTAGTACAAACGTGAAATCA 58.478 37.500 21.78 3.92 41.08 2.57
1637 1882 7.482743 TCATACTCGTAGTACAAACGTGAAATC 59.517 37.037 21.78 0.00 41.08 2.17
1638 1883 7.307694 TCATACTCGTAGTACAAACGTGAAAT 58.692 34.615 21.78 14.45 41.08 2.17
1639 1884 6.667370 TCATACTCGTAGTACAAACGTGAAA 58.333 36.000 21.78 13.33 41.08 2.69
1640 1885 6.147656 TCTCATACTCGTAGTACAAACGTGAA 59.852 38.462 21.78 10.16 41.08 3.18
1641 1886 5.639082 TCTCATACTCGTAGTACAAACGTGA 59.361 40.000 21.78 15.58 41.08 4.35
1642 1887 5.861725 TCTCATACTCGTAGTACAAACGTG 58.138 41.667 17.05 16.72 41.08 4.49
1677 2060 5.303333 ACAAGGATGTTAAAATGGACGGTTT 59.697 36.000 0.00 0.00 35.91 3.27
1691 2076 1.978580 ACTTCTCCGGACAAGGATGTT 59.021 47.619 21.64 0.00 40.74 2.71
1692 2077 1.645710 ACTTCTCCGGACAAGGATGT 58.354 50.000 21.64 12.89 44.25 3.06
1885 2288 4.460263 TCATTCTGTACAAACTGTTGCCT 58.540 39.130 0.00 0.00 38.39 4.75
1911 2314 4.506979 GGAACGGAGGGAGTAGATGATAGA 60.507 50.000 0.00 0.00 0.00 1.98
1924 2327 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1942 2345 9.757227 GTGCATAGTGAAATCTCTATAAGACTT 57.243 33.333 0.00 0.00 36.65 3.01
1943 2346 8.364142 GGTGCATAGTGAAATCTCTATAAGACT 58.636 37.037 0.00 0.00 36.65 3.24
1944 2347 8.144478 TGGTGCATAGTGAAATCTCTATAAGAC 58.856 37.037 0.00 3.46 36.65 3.01
1945 2348 8.144478 GTGGTGCATAGTGAAATCTCTATAAGA 58.856 37.037 0.00 0.00 38.72 2.10
1946 2349 7.928167 TGTGGTGCATAGTGAAATCTCTATAAG 59.072 37.037 0.00 0.00 33.04 1.73
1947 2350 7.710907 GTGTGGTGCATAGTGAAATCTCTATAA 59.289 37.037 0.00 0.00 33.04 0.98
1948 2351 7.069950 AGTGTGGTGCATAGTGAAATCTCTATA 59.930 37.037 0.00 0.00 33.04 1.31
1949 2352 6.051717 GTGTGGTGCATAGTGAAATCTCTAT 58.948 40.000 0.00 0.37 34.17 1.98
1950 2353 5.187772 AGTGTGGTGCATAGTGAAATCTCTA 59.812 40.000 0.00 0.00 0.00 2.43
1951 2354 4.019860 AGTGTGGTGCATAGTGAAATCTCT 60.020 41.667 0.00 0.00 0.00 3.10
1952 2355 4.256920 AGTGTGGTGCATAGTGAAATCTC 58.743 43.478 0.00 0.00 0.00 2.75
1953 2356 4.292186 AGTGTGGTGCATAGTGAAATCT 57.708 40.909 0.00 0.00 0.00 2.40
1954 2357 4.572389 CCTAGTGTGGTGCATAGTGAAATC 59.428 45.833 0.00 0.00 0.00 2.17
1955 2358 4.225042 TCCTAGTGTGGTGCATAGTGAAAT 59.775 41.667 0.00 0.00 0.00 2.17
1956 2359 3.580895 TCCTAGTGTGGTGCATAGTGAAA 59.419 43.478 0.00 0.00 0.00 2.69
1957 2360 3.169908 TCCTAGTGTGGTGCATAGTGAA 58.830 45.455 0.00 0.00 0.00 3.18
1958 2361 2.815158 TCCTAGTGTGGTGCATAGTGA 58.185 47.619 0.00 0.00 0.00 3.41
1959 2362 3.118629 ACATCCTAGTGTGGTGCATAGTG 60.119 47.826 0.00 0.00 0.00 2.74
1960 2363 3.107601 ACATCCTAGTGTGGTGCATAGT 58.892 45.455 0.00 0.00 0.00 2.12
1961 2364 3.827008 ACATCCTAGTGTGGTGCATAG 57.173 47.619 0.00 0.00 0.00 2.23
1962 2365 4.568072 AAACATCCTAGTGTGGTGCATA 57.432 40.909 0.00 0.00 31.49 3.14
1963 2366 3.439857 AAACATCCTAGTGTGGTGCAT 57.560 42.857 0.00 0.00 31.49 3.96
1964 2367 2.949177 AAACATCCTAGTGTGGTGCA 57.051 45.000 0.00 0.00 31.49 4.57
1965 2368 3.435671 GTGTAAACATCCTAGTGTGGTGC 59.564 47.826 0.00 0.00 31.49 5.01
1966 2369 4.637276 TGTGTAAACATCCTAGTGTGGTG 58.363 43.478 0.00 0.00 31.49 4.17
1967 2370 4.967084 TGTGTAAACATCCTAGTGTGGT 57.033 40.909 0.00 0.00 31.49 4.16
1968 2371 6.817765 AAATGTGTAAACATCCTAGTGTGG 57.182 37.500 0.00 0.00 31.49 4.17
1969 2372 7.083858 CCAAAATGTGTAAACATCCTAGTGTG 58.916 38.462 0.00 0.00 31.49 3.82
1970 2373 6.775629 ACCAAAATGTGTAAACATCCTAGTGT 59.224 34.615 0.00 0.00 0.00 3.55
1971 2374 7.214467 ACCAAAATGTGTAAACATCCTAGTG 57.786 36.000 0.00 0.00 0.00 2.74
1972 2375 6.433093 GGACCAAAATGTGTAAACATCCTAGT 59.567 38.462 0.00 0.00 0.00 2.57
1973 2376 6.403200 CGGACCAAAATGTGTAAACATCCTAG 60.403 42.308 0.00 0.00 0.00 3.02
1974 2377 5.413213 CGGACCAAAATGTGTAAACATCCTA 59.587 40.000 0.00 0.00 0.00 2.94
1975 2378 4.217550 CGGACCAAAATGTGTAAACATCCT 59.782 41.667 0.00 0.00 0.00 3.24
1976 2379 4.022676 ACGGACCAAAATGTGTAAACATCC 60.023 41.667 0.00 0.00 0.00 3.51
1977 2380 5.116069 ACGGACCAAAATGTGTAAACATC 57.884 39.130 0.00 0.00 0.00 3.06
1978 2381 6.207810 ACATACGGACCAAAATGTGTAAACAT 59.792 34.615 0.00 0.00 31.56 2.71
1979 2382 5.531659 ACATACGGACCAAAATGTGTAAACA 59.468 36.000 3.25 0.00 31.56 2.83
1980 2383 6.004408 ACATACGGACCAAAATGTGTAAAC 57.996 37.500 3.25 0.00 31.56 2.01
1981 2384 6.935771 ACTACATACGGACCAAAATGTGTAAA 59.064 34.615 11.69 0.00 34.54 2.01
1982 2385 6.465948 ACTACATACGGACCAAAATGTGTAA 58.534 36.000 11.69 0.00 34.54 2.41
1983 2386 6.040209 ACTACATACGGACCAAAATGTGTA 57.960 37.500 11.69 3.66 34.54 2.90
1984 2387 4.901868 ACTACATACGGACCAAAATGTGT 58.098 39.130 11.69 6.77 34.54 3.72
1985 2388 4.331717 GGACTACATACGGACCAAAATGTG 59.668 45.833 11.69 6.32 34.54 3.21
1986 2389 4.020039 TGGACTACATACGGACCAAAATGT 60.020 41.667 8.07 8.07 36.56 2.71
1987 2390 4.509616 TGGACTACATACGGACCAAAATG 58.490 43.478 0.00 0.00 0.00 2.32
1988 2391 4.829872 TGGACTACATACGGACCAAAAT 57.170 40.909 0.00 0.00 0.00 1.82
1989 2392 4.829872 ATGGACTACATACGGACCAAAA 57.170 40.909 0.00 0.00 38.26 2.44
1990 2393 4.957954 ACTATGGACTACATACGGACCAAA 59.042 41.667 0.00 0.00 41.03 3.28
1991 2394 4.340097 CACTATGGACTACATACGGACCAA 59.660 45.833 0.00 0.00 41.03 3.67
1992 2395 3.887110 CACTATGGACTACATACGGACCA 59.113 47.826 0.00 0.00 41.03 4.02
1993 2396 4.139786 TCACTATGGACTACATACGGACC 58.860 47.826 0.00 0.00 41.03 4.46
1994 2397 5.762825 TTCACTATGGACTACATACGGAC 57.237 43.478 0.00 0.00 41.03 4.79
1995 2398 6.776116 AGATTTCACTATGGACTACATACGGA 59.224 38.462 0.00 0.00 41.03 4.69
1996 2399 6.982852 AGATTTCACTATGGACTACATACGG 58.017 40.000 0.00 0.00 41.03 4.02
1997 2400 7.877003 AGAGATTTCACTATGGACTACATACG 58.123 38.462 0.00 0.00 41.03 3.06
1999 2402 9.000486 CGTAGAGATTTCACTATGGACTACATA 58.000 37.037 0.00 0.00 41.03 2.29
2000 2403 7.720074 TCGTAGAGATTTCACTATGGACTACAT 59.280 37.037 0.00 0.00 43.68 2.29
2001 2404 7.052248 TCGTAGAGATTTCACTATGGACTACA 58.948 38.462 0.00 0.00 30.34 2.74
2002 2405 7.493743 TCGTAGAGATTTCACTATGGACTAC 57.506 40.000 0.00 0.00 30.34 2.73
2003 2406 7.991460 TCTTCGTAGAGATTTCACTATGGACTA 59.009 37.037 4.96 0.00 38.43 2.59
2004 2407 6.829298 TCTTCGTAGAGATTTCACTATGGACT 59.171 38.462 4.96 0.00 38.43 3.85
2005 2408 6.913673 GTCTTCGTAGAGATTTCACTATGGAC 59.086 42.308 0.00 2.91 38.43 4.02
2006 2409 6.829298 AGTCTTCGTAGAGATTTCACTATGGA 59.171 38.462 0.00 0.00 38.43 3.41
2007 2410 7.033530 AGTCTTCGTAGAGATTTCACTATGG 57.966 40.000 0.00 0.00 38.43 2.74
2011 2414 9.398538 AGTATAAGTCTTCGTAGAGATTTCACT 57.601 33.333 0.00 0.00 38.43 3.41
2018 2421 8.986847 CCGAAATAGTATAAGTCTTCGTAGAGA 58.013 37.037 11.14 0.00 38.43 3.10
2019 2422 8.986847 TCCGAAATAGTATAAGTCTTCGTAGAG 58.013 37.037 11.14 0.14 38.43 2.43
2020 2423 8.893219 TCCGAAATAGTATAAGTCTTCGTAGA 57.107 34.615 11.14 0.00 35.17 2.59
2021 2424 9.379811 GTTCCGAAATAGTATAAGTCTTCGTAG 57.620 37.037 11.14 0.00 35.17 3.51
2022 2425 8.064222 CGTTCCGAAATAGTATAAGTCTTCGTA 58.936 37.037 11.14 0.00 35.17 3.43
2023 2426 6.909357 CGTTCCGAAATAGTATAAGTCTTCGT 59.091 38.462 11.14 0.00 35.17 3.85
2024 2427 6.359087 CCGTTCCGAAATAGTATAAGTCTTCG 59.641 42.308 6.85 6.85 36.36 3.79
2025 2428 7.420800 TCCGTTCCGAAATAGTATAAGTCTTC 58.579 38.462 0.00 0.00 0.00 2.87
2026 2429 7.338800 TCCGTTCCGAAATAGTATAAGTCTT 57.661 36.000 0.00 0.00 0.00 3.01
2027 2430 6.016443 CCTCCGTTCCGAAATAGTATAAGTCT 60.016 42.308 0.00 0.00 0.00 3.24
2028 2431 6.148264 CCTCCGTTCCGAAATAGTATAAGTC 58.852 44.000 0.00 0.00 0.00 3.01
2029 2432 5.010415 CCCTCCGTTCCGAAATAGTATAAGT 59.990 44.000 0.00 0.00 0.00 2.24
2030 2433 5.242393 TCCCTCCGTTCCGAAATAGTATAAG 59.758 44.000 0.00 0.00 0.00 1.73
2031 2434 5.139727 TCCCTCCGTTCCGAAATAGTATAA 58.860 41.667 0.00 0.00 0.00 0.98
2032 2435 4.728772 TCCCTCCGTTCCGAAATAGTATA 58.271 43.478 0.00 0.00 0.00 1.47
2033 2436 3.569491 TCCCTCCGTTCCGAAATAGTAT 58.431 45.455 0.00 0.00 0.00 2.12
2034 2437 2.954318 CTCCCTCCGTTCCGAAATAGTA 59.046 50.000 0.00 0.00 0.00 1.82
2035 2438 1.755380 CTCCCTCCGTTCCGAAATAGT 59.245 52.381 0.00 0.00 0.00 2.12
2036 2439 1.755380 ACTCCCTCCGTTCCGAAATAG 59.245 52.381 0.00 0.00 0.00 1.73
2037 2440 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2038 2441 1.755380 CTACTCCCTCCGTTCCGAAAT 59.245 52.381 0.00 0.00 0.00 2.17
2039 2442 1.180029 CTACTCCCTCCGTTCCGAAA 58.820 55.000 0.00 0.00 0.00 3.46
2040 2443 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
2041 2444 0.393537 GTCTACTCCCTCCGTTCCGA 60.394 60.000 0.00 0.00 0.00 4.55
2042 2445 1.712977 CGTCTACTCCCTCCGTTCCG 61.713 65.000 0.00 0.00 0.00 4.30
2043 2446 1.382692 CCGTCTACTCCCTCCGTTCC 61.383 65.000 0.00 0.00 0.00 3.62
2044 2447 0.679321 ACCGTCTACTCCCTCCGTTC 60.679 60.000 0.00 0.00 0.00 3.95
2045 2448 0.620556 TACCGTCTACTCCCTCCGTT 59.379 55.000 0.00 0.00 0.00 4.44
2046 2449 0.179936 CTACCGTCTACTCCCTCCGT 59.820 60.000 0.00 0.00 0.00 4.69
2047 2450 1.165284 GCTACCGTCTACTCCCTCCG 61.165 65.000 0.00 0.00 0.00 4.63
2048 2451 0.106819 TGCTACCGTCTACTCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
2049 2452 1.023502 GTGCTACCGTCTACTCCCTC 58.976 60.000 0.00 0.00 0.00 4.30
2050 2453 0.747283 CGTGCTACCGTCTACTCCCT 60.747 60.000 0.00 0.00 0.00 4.20
2051 2454 0.745845 TCGTGCTACCGTCTACTCCC 60.746 60.000 0.00 0.00 0.00 4.30
2052 2455 1.089920 TTCGTGCTACCGTCTACTCC 58.910 55.000 0.00 0.00 0.00 3.85
2053 2456 2.907910 TTTCGTGCTACCGTCTACTC 57.092 50.000 0.00 0.00 0.00 2.59
2054 2457 2.094854 CCTTTTCGTGCTACCGTCTACT 60.095 50.000 0.00 0.00 0.00 2.57
2055 2458 2.257034 CCTTTTCGTGCTACCGTCTAC 58.743 52.381 0.00 0.00 0.00 2.59
2056 2459 1.888512 ACCTTTTCGTGCTACCGTCTA 59.111 47.619 0.00 0.00 0.00 2.59
2057 2460 0.677842 ACCTTTTCGTGCTACCGTCT 59.322 50.000 0.00 0.00 0.00 4.18
2058 2461 1.066136 GACCTTTTCGTGCTACCGTC 58.934 55.000 0.00 0.00 0.00 4.79
2084 2488 9.387257 GCCATTGAATAAAGATTTTTCCTTCAT 57.613 29.630 7.19 0.00 32.60 2.57
2111 2515 3.071479 TGGAAATAGTTGTCGGTTCAGC 58.929 45.455 0.00 0.00 0.00 4.26
2117 2521 5.121768 CAGTAACCTTGGAAATAGTTGTCGG 59.878 44.000 0.00 0.00 0.00 4.79
2118 2522 5.390567 GCAGTAACCTTGGAAATAGTTGTCG 60.391 44.000 0.00 0.00 0.00 4.35
2182 2589 1.251527 ACCGCAGATTGTCGACTCCT 61.252 55.000 17.92 8.02 0.00 3.69
2186 2593 0.666274 TCACACCGCAGATTGTCGAC 60.666 55.000 9.11 9.11 0.00 4.20
2188 2595 0.371301 CATCACACCGCAGATTGTCG 59.629 55.000 0.00 0.00 0.00 4.35
2190 2597 0.036732 ACCATCACACCGCAGATTGT 59.963 50.000 0.00 0.00 0.00 2.71
2202 2609 5.077134 AGTACTACCGGTAAAACCATCAC 57.923 43.478 16.65 4.89 38.47 3.06
2237 2644 0.308068 ACGGCGATAGATGAGTGTCG 59.692 55.000 16.62 0.00 39.76 4.35
2304 2711 1.538849 CCTTCCAGTTTGCTTGCCAAC 60.539 52.381 1.91 1.91 31.97 3.77
2306 2713 0.106268 TCCTTCCAGTTTGCTTGCCA 60.106 50.000 0.00 0.00 0.00 4.92
2329 2741 1.134946 CTGGGCCTAAAATTCCAAGCG 59.865 52.381 4.53 0.00 0.00 4.68
2361 2776 3.691049 TTTGTCTTTCGGCTTTCACAG 57.309 42.857 0.00 0.00 0.00 3.66
2382 2798 0.523072 GGTCACTGTGATTTGCGCAT 59.477 50.000 12.75 0.00 36.23 4.73
2387 2803 2.094894 GCGATGAGGTCACTGTGATTTG 59.905 50.000 14.37 2.87 0.00 2.32
2588 3004 7.648142 TCATGATAAAACACCACTCTGTTTTC 58.352 34.615 12.12 2.51 46.68 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.