>input_sequence_73097
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-TAGACCAA-------------AAAGATCACCGAGCTTCCAATCCAATTCCTCCCCAGTGTAA-----AATACCTGCGCG
AGCACAAAACCGCACAGATATGTCGACGGTGGAGGAGGAGCTGTCCGAGTGCGAGGTGCTGTGGCCGGAGACGCGCCACG
GCGCTCCGGGGAGCGCGTGGGGGTCATCGACGGCGGCTCCCAGGGCCTCCAGGGACCACCGGCAGTGCTCCGCGCCGGTG
GACATTCCCAGGGCCGCGCACCTGCCCGGCGGGCGCGCTGGCCTGGACGACGACGAGG------AGGA---CGGCGCCAT
GGTGCCGCCGCACCTGATGGTGTCGCGAAGGTGGTCGGAGGGGAAGGCGGCGGCGGCGTTCTCGCTGCGGTCCGGGCCCG
GGCGGGCGCACCGGGACCTCAACAACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTCATCGAAGGG-----TGACGAG
GCGGACCCGTCATTTGTGCATATG--AGAGAAAAGTCAGTCACCACGCGTTTTCTCGACGGTGTTGGCCAGTCAATTTTG
TTCGGCTCATCTTCCCCGTCGTCACCAATCAAATTAATTAGTC----TCCCTTGGTTGATGCAAATCAGCCAGTAGTGAG
TTAGGATTTA-----TTTTTTTTCGGAATGAAATAAGTAGTGATTT----------------------------------
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>chr3D_1_TraesCS3D01G283700
ACTCGTAATGGTGTGACTGCAACCGGTCCGATGGCGCAGCAGCAGCAGTACACACGCGTCCTCGAAATGATTAGCAAAGC
GCAGGCCGATGGATTCCGTTTGCTTCCAAGCCAGAGGACCAAAGGCTACACGAGTAGGTCCGTGAGAGCGTCGC------
--AGGGGACGCGTGTGACGCGGTCGAGGATTAATTAATCTGGATCAAGCCTGGCGTAATCTTGACGTGCTTTAAAAATGG
GATCTCGCGCTCGTGTATTCGGCGAGTCTCGTCAGAGCTGCTGCGCGCCGTGCTTTAGATAATGA---TA----------
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--------------------------------------------------------------TAACTTTCAAAGAATTTC
ACCACCTTGTTTGTAAATCTTATATTCTCTATCTGAAGGTGTATGTGGCACCTTGGTCACCTGCCACCAATGATCGGATC
CATGATTAGTAGTACTCCCACCATCTTAAATGTAAGTTTTTCTAGAGATTTTAACAAGTGATTATATACGAAATAAAATG
AGTGAATCTAAATTCTAAATTGGCAAGTTTATCGTCATATCGGCTGATTTATCGGCCGAATTATCTTATCGGTCAGACAC
CGGTAAGCAATGAATCGGCCGATTTATCGAATATCGGAAAATATCTTAAACAGTGATCTACATACATTCGTATGTTGTAG
TTCATTTAAAATGTCTAAAAGGACCCGTATTTAAGAACGGAGGGAGTAGTACATTAAGTACCAAATGGAAGAAAGAAAAT
AGAGGGAGAAACTGATCGCTCGCGCTTGTATATATACGACCAAAATAGATTGCAGCTTCTTCCTTTA---AAATCTGAAA
AAACAGATTGCAGCTTCATGTCGACCAAC-----------------------------TTTATTTCTATTTTTTTTTAGT
GGTACTTTATTTC------TATTTGACCTGGCTCGGTAGGCCCGCGATCCGGTTCCGGCCTCATCCTCCACGCGGCTGCC
GCCGCCGTACGTGGGAAGCTACACCTACACACACGGCATGGTGCCACACCGCCTATATATACGCGCTTCCCCGTCACAGG
ATAGACCAA-------------AAAGATCACCGAGCTTCCAATCCAATTCCTCCCCAGTGTAA-----AATACCTGCGCG
AGCACAAAACCGCACAGATATGTCGACGGTGGAGGAGGAGCTGTCCGAGTGCGAGGTGCTGTGGCCGGAGACGCGCCACG
GCGCTCCGGGGAGCGCGTGGGGGTCATCGACGGCGGCTCCCAGGGCCTCCAGGGACCACCGGCAGTGCTCCGCGCCGGTG
GACATTCCCAGGGCCGCGCACCTGCCCGGCGGGCGCGCTGGCCTGGACGACGACGAGG------AGGA---CGGCGCCAT
GGTGCCGCCGCACCTGATGGTGTCGCGAAGGTGGTCGGAGGGGAAGGCGGCGGCGGCGTTCTCGCTGCGGTCCGGGCCCG
GGCGGGCGCACCGGGACCTCAACAACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTCATCGAAGGG-----TGACGAG
GCGGACCCGTCATTTGTGCATATG--AGAGAAAAGTCAGTCACCACGCGTTTTCTCGACGGTGTTGGCCAGTCAATTTTG
TTCGGCTCATCTTCCCCGTCGTCACCAATCAAATTAATTAGTC----TCCCTTGGTTGATGCAAATCAGCCAGTAGTGAG
TTAGGATTTA-----TTTTTTTTCGGAATGAAATAAGTAGTGATTTCACGTTTGTACTAC--------------------
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--------------------------------------GAGTATGAGATTCTTCAGATTAAACCG--TCCATTTTAACAT
CCTT-GTCCGGAGAAGTTTCTGTTGCCGTCGCATGTCGGCACGGGCTTTTGATCAATCCTGTGGAAATTTTTTTACTGTT
TGAC--AACAGAGCAAGCCTGATAGGTCGAAGTACCGAGCAAAAAACGTGCGATTTAGCAGGTGAACAATTCAAA-----
---------AATGCTAAAGAAAACATC-AACTAGGCTTCACGGAAACAGGCAACAGTTTGTACAGAATGAGCATCTATCA
TCTACTCCCTCCGTTCCTAAATATAAGTCTTATAGAGATTTCACTATGCACCACACTAGGATGTTTACACATTTTGGTCC
GTATGTAGTCCATAGTGAAATCTCTACGAAGACTTATACTATTTCGGAACGGAGGGAGTAGACGGTAGCACGAAAAGG-T
CCATGACATGAAGGAAAAATCTTTATTCAATGGCGCTGAACCGACAACTATTTCCAAGGTTACTGCTCTGATACAAAGTG
AAGCATTTCATGC---TACAATGGATGCAGGAGTCGACAATCTGCGGTGTGATGGTTTTACCGGTAGTACTCTTCGTTAT
TGACGACACTCATCTATCGCCGTAGGACAAAGTAGCTGCATACAGGATGAGATTCTCTTTTGTGAAGGAGGTTGGCAAGC
AAAC-----TGGAAGGAAAACGC---TTGGAATTTTAGGCCCAGAAACATCTATCCTGTGAAAG-CCGAAAGACAAAATG
CGCAAATCACAGTGACCTCATCGCCTTGATCCAATCAACGTCTAATCTAAAATCGCCTGGCCCAGTCTTAGCACCAGGAA
CGCCGCCTTCTGCATTTAACGAGAGAGACATTCCCACGACGCGAGAAGGATTCATTTCCATGTTCGCTTCGATCACATTT
CCTTTCCATGTAGGTAAGTAGCTATCGAGAGGGATCTGGATGGGAAAACAGAGTGGTGTTTTA-TCATGAACAAACACAT
AATTGCCAGTTGCGACAA
>chr3B_1
ACTCGTAATGGTACGACTGCAACCGGTCCGATGGCGCAGC---AGCAGTGCACACGCGTCCCCGAAATGATTAGCAAAGC
GCAGGCCGATGGATTCCGTTTGCTTCCCAGCC-GAGGGCCAGAGATTACACGAGTAGGTCCGTGAGAGAGTCGCAGGGGT
GCAGGGGACGCGTGTGATGCAGTCGAGGATTAATTAATCTGGATCAAGCCTGGCGTAATCTTGACACGCTTTAAAAATGG
GATCTCGCGCTCGTGTATTCGGCTAGTCTCGTCAGAGCTGCTGCGCGCGGTGCTTTAGATAATGATAGTA----------
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--------------------------------------------------------------TAACTTTCAAAGGATTTC
ACCGCCTTATTTGTAAATCTTATATTCCCTATCTGAAGGTGTATGTGGCACCTTCGTCACCTGCCACCAATGACCGGATT
CATGATTAGTAGC-------------------------------------------------------------------
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--------------------------------------------------------------AAACGGAAGAAAGAAAAT
AGAGGGAGAAACTGATCGCTCGCTCTTGTATATACGACCAAAAG-TAGATTGCAGCTTCTTCTTTTTAATAAATCTGAAA
AAACAGATTGCAGCTTCATGTCGACCAACCTTATTTCTATGTTTTTTTTAGAAACAACTTTATTTCTATGTGTGTGAGCC
GGTGGATTGGATCAGCCTTTATTTGACCTGGCCCGGTAGGCCCGCGATCCGGTTCCGGCCTCATCCTCCACGCGGCTGCC
G---CCGTACGTGGGAAGCTACACCTACACGCACGGCATGGTGCCACACCGCCTATATATACGCGCTTCCCCGTCACAGG
ATAGGACGCTAAACCAGAAAAGAAAGATCATCGAGCTTCCAATCCAAGTCCTCAGTCCTCACCAGTGCAATACGTGCGCG
AGCACAAAACCGCACAAATATGTCGACGGTGGAGGAGGAGCTGTCCGAGTGCGAGGTGCTGTGGCCGGAGACGCGCCACG
GCGCTCCGGGGAGCGCGTGGGGGTCGTCGACGGCGGCTCCCAGGGCCTCCAGGGACCACCGGCAGTGTTCAGCGCCGGTG
GACATACCCCGTGGCCGT------------GGGCGTGCTGGCCTGGACGACGACGAGGAGGAGGAGGA---CGGCGCCAT
GGTGCCGCCGCACCTGATGGTGTCGCGCAGGTGGTCGGAGGGGAAGGCGGCGGCGGCGTTCTCGCTGCGGTCGGGGCCCG
GGCGGGCGCACCGGGACCTCAACAACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTCATCGAAGGGTGACGTGACGAG
GCGGACCCGTCATTTGTGCATATGTGAGAGAAAAGTCAGTCACCACGCGCCTTCTCCACGGTGTTGGCCAGTCAATTTTG
TTCGGCTCGTCTTCTCCGTGTTTGCCAATCAAATTAATTATTAGT-ATCCCTTGGTTGATGCAAATCAGCCAGTAGTGAG
TTAGGATATTTTATTTTTCTTTTCGGAATGGAATAAGCT--------ACGTTTGTACTGC--------------------
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-----------------------------------------TATGAGATTCTTCAGATTGAACCGCGTCCATTTTTTCAT
CCTTGGTCCGGAGAGGTTTCTGTTGCTGTCGCATGTCGGCACGGGCTTTTGATCAATCCTGTGGAAAAAATG-TACTGTT
TGACAAAACAGAGCAAGCCTGGTAGGTCGAAGTACCGAGCAAAAAACGTGCGATTTAGCAGGTGAACAATTCAAA-----
---------AATGCTAAAGAAAACATCAAACGAGGCTTCAAGGAAACGGGGAACAGTTTGTATGGAATGAGCACCTATCA
TCTACTAGACGGTA------------------------------------------------------------------
-------------------------------------------------------------ACGGTAGCACGAAAAGG-T
CCATGACGTGAAGGAAAAATCTTTATT-----------------CAACTATTTCCAAGGTTACTGCTCTGATACAAAGTG
AAGCATT---------------------------------TCTGCGGTATGATGGTTTTACCGTTAATACTCTTGGTTAT
TGATGGCACTCATCTATCGCGGTAGGACAAA-TAGCTGCATACAGGATGACATCCTCTTTTGTGAAGGAGCTCGGCAAGC
AAACTACTGTAGAAGGAAACGAGCATGTGGAGTTTCAGGCCCAGAAACATCATC----TGAAAG-CCGAAAGACAAAGTG
CAGAAATCACAGTGCCCTCATCGCCTTGATCCAGTCAACGTCTAATCTAAAATCGCCTGGCCCAGTCTTAGCACCAGGAA
TGCCGCCTTCTGCATTCAACGAGAGAGACATTCCCACGACGCGAGAAGGATTCATTTCCATGTTCGCTTCGATCACATTT
CCTTTCCATGTAGGTAAGTAGCTATCGAGAGGGATCTGGATGGAAAAACAGAGTGGTGTTTTA-TCATGAACAAACACAT
AATTGCCAGTTGCGAC--
>chr3A_24
-----------------------CGGTCCCATGGAGCAGCAGCAGCAGCACACACGCGTCCTCGAAATGATTTGCAAAGC
GCAGGCCAGTGGATTCCGTTTGCTTCCCAGCGAAAGGACCAAAGGCTACACGAGTAGGTCCGTGAGAGCGTCGCAGGGGC
GCGGGGGACGCGTGTGACGCGGTCGAGGATTGATTAATCTGGATCAAGCCTGGCGTAATCTTGCCACACTTTAAAAATGG
GATCTCGCGCTCGTGTATTCGGCGAGCCTCGTCAGAGCTGCTGCTGCGGTCGAGGATCTATAATGCTAAATTTATAAAAT
AAGAAAAATAAAGTCATGGCACATCTAATGTTGTTGATTTCACATTCTAAATGATTGTATTTTTTTCTATAAACTTGATC
AAAGTTTACGAGGTTTGACTTCAGACAAATCTTATATGCGAACTAAAAAGGACCGGAGGGAGTAACTTTCAAAGGATTTT
ACCACCTTGTTTGTA----------------------GGTGTATGTGACG-CTTCGTCACCTGCCACCAATGATCGGATT
CATGATTAGTACTACTAGTACATTAATAAGTACTCCATCCGTTCGAAATTACTCGGTTGA--------------AAAATG
AATGTATTTATGTATTTTAATTATAGA-----------------------------------------------------
----------------------------------------------------------TACATCCATTTTTATGATAAGT
AATTCCA----------------------------AACGGAGGAAGTAGTACCA--------AAATGGAAGAAAGAAAAT
AGTGGGAGCAACTGATCGCTCGCGCTTGTATATACGA------------TTGCAACTTTTTAAAAAA---ATATCTGAAA
AAACAGATTGCAGCTTCATGTCGACCAAC-----------------------------TTTATTTCTATGTGTGTGAGCC
GGTGGATTGGATCAGCCTTTATTTGACCTGGCCCGGTAGGCCCGCGATCCGGCTCCGGCCTCATCCTCCACGCGGCTGCC
G---CCGTACGTGGGAAGCTACACCTACACACACGGCATGGTGCCACACCGCCTATATATACGCGCTTCCCCGTCACAGG
ATAGGACGCTAAAGCAGAAAAGAAAGATCATCGAGCTTCCAATCCAGGTCTTCACTCATCACCGGTGCAATACGTGCGCG
AGTACAAAACCGCACAGACATGTCGACGGTGGAGGAGGAGCTGTCCGAGTGCGAGGTGCTGTGGCCGGAGACGCGCCACG
GCGCTCCGGGGAGCGCGTGGGGGCCATCGACGGCGGCTCCCAGGGCCTCCAGGGCCCGCCGGCAGTGCTCTGCGCCGGTG
GACATTCCCAGGGCCGCGCACCTGTCCGGCGGGCGCGCTGGCCTGGACGACGACGAGGAGGAGGAGGAGGACGGCGCCAT
GGTGCCGCCGCACCTGATGGTGTCGCGCAGGTGGTCGGAGGGGAAGGCGGCGGCGGCCTTCTCGCTGCGGTCCGGGCCCG
GGCGCGCGCACCGGGACCTCAACCACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTCATCGAAGGGTGACG-GACGAG
GCGGACCCGTCATCTGTGCATATGTGCGAGAAAAGTCAGTCACCACGCGTCTTCCCGACGGTGTTGGCCGGTCAATTTTG
TTCGGCTCATCTTCCCCGTGGTTGCCAATCAAATTAATTAATTTGCATCCGTTGGTTGATGCAAATCGGCCAGTAGTGAG
TTAGGAT--------TTTTTTTTTGGAATGGAATAGTAT--------ACATTTTTCTGAATAATCTACGACTGTACTACT
CCCTCCGTCCGAAAATACTTGTTATCAAAATGAACAAAAAACGATGTATTTAGAACTAAAATACATTTAGATACATCCTC
TTTTATTCATTTTAATGAAAAGTATTTCCAGACAAAGGGAGTATGAGATTCTTCAGATTGAACCGCGTCCATTTTTTCAT
CCTTAGTCCGGAGAAGTTTCTGTTGCTGTGGCATGTCGGCACGGGCTTTTCAACA-----------------------TT
TGACCAAACAGGGCAAGCCTGATACGTTGAAGTAGCGAGCAAAAAACGTGCGATTTAGCAGGTGGACAATTCAAAAGGTC
CCATTCAAAAATGCTAAAAAAAACATC-AACTAGGCTTCACAGAAACTGGCAACAGTTTATGCAGAAC------------
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----------------------------------------------------------------GTAGCACCAAAAAATT
CCATGGCCTGAAGAAAAAATCTTTATTCAATGGCCCTGAAAAGATAACTATTTCCAAGGTTACTGCTCTGATACAAAGTG
AAACATTTCATGCATCTACAATGGATGCTGGATTTGTCAATCTGTGGTATGACGGTTTTACCGTT----------GTTAT
TGATGACACTCATCTATCGCCGTAGGACAAAGAAGCTGCATAGAGAATGAGATTCTCTTTTGTTAAGGAGCTCAGCAATC
AAAC-----TGGAAGGAAAATGCTCGTTGGAATTTTAGGCC--------TCTATCTTGTGAAAGCCGGAAGAACAAACTG
CGGGAATCACAGGGACCTCATCGCCTTGATCCAATCAACGTCTAATCTAAAATCGCCTGGCCCAGTCTTAGCACCAGGAA
CGCCGCCTTCTGCATTTAACGAGAGAGACATTCCCACGACGCGAGAAGGATTCATTTCCATGTTCGCTTCGATCACGTTT
CCTTTCCATGTAGGTAAATAGCTATCGAGAGGGATCTGGATGGAAAAACAGAGTGGTGTTTTAATCATGAACAAACATAT
A-----------------
>SNPs
------------SS------------------------------------------------------------------
---------------------------S----------------------------------------------------
-----------------------------------------------------------------SS-------------
------------------------------------------------S-------------------------------
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--------------------------------------------------------------------------S-----
---------------------------S--------------------------S------------------------S
----------------SSS--SS-SS---S-SSSSSS-SSSS-S--S---SSSSSSSSSSSSSSSSSSSSSSSS------
-S--S--S--SS-SS-SS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----SS----S-SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--------SSSSSSSSSS------------------
----------------------------------SSSSSSS--SS-----------------S-----------------
---------------------------------------------------------------------S-S-S-SSSSS
---SSS--SSS---------------------S-----------------------------------------------
-SSS----------------------------------------------------------------------------
----SS-SS---------------------S----------------S-----S-SSS-SSSS----------S------
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----------------------------------------------------------------------S---------
------------------------S-------------------------------------------------------
---------------------------S----------------------------------------------------
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--------------------------------------------------S-----------------------------
-------------------S--SS----------------S-S-------------------------------------
-------S-S--------------------S------SSSSSSSSSS---------------------------------
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-----------------------------------------------------------S---------------SS---
--------------------------S----------------------------------------SSS-SS-------
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-----------------------------------------------S-------------------------S------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
-------S--------------------------S-----SS--------------------------------------
----------------------------S---S-S-S-----------S--------------S--S-------S-----
---S------------------------------------------------------------------S-S-------
--------------------S----------------------------------S---------------------S--
--S-----------------------------------------------------------------------------
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-------------------------------------------S------------------------------------
----------------SS
>forward_730
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----------------------------------------------------------------------GGTCAGACAC
CGGTAAGCAA----------------------------------------------------------------------
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>reverse_2597
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------------------------------------ACAATCTGCGGTGTGATGGT------------------------
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