Multiple sequence alignment - TraesCS3D01G282300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G282300 chr3D 100.000 3598 0 0 1 3598 390409979 390413576 0.000000e+00 6645.0
1 TraesCS3D01G282300 chr3D 99.211 380 3 0 3188 3567 560785 560406 0.000000e+00 686.0
2 TraesCS3D01G282300 chr3D 99.211 380 3 0 3188 3567 576999 576620 0.000000e+00 686.0
3 TraesCS3D01G282300 chr3D 98.158 380 7 0 3188 3567 119412682 119412303 0.000000e+00 664.0
4 TraesCS3D01G282300 chr3A 92.974 3231 154 28 1 3187 510827466 510830667 0.000000e+00 4641.0
5 TraesCS3D01G282300 chr3A 100.000 31 0 0 3568 3598 510830660 510830690 1.400000e-04 58.4
6 TraesCS3D01G282300 chr3B 92.481 1596 60 18 1627 3187 507496828 507498398 0.000000e+00 2228.0
7 TraesCS3D01G282300 chr3B 97.108 657 16 2 971 1624 507491325 507491981 0.000000e+00 1105.0
8 TraesCS3D01G282300 chr3B 90.210 143 10 2 822 960 507491202 507491344 2.210000e-42 183.0
9 TraesCS3D01G282300 chr7D 98.958 384 4 0 3188 3571 124296103 124296486 0.000000e+00 688.0
10 TraesCS3D01G282300 chr7D 98.425 381 6 0 3188 3568 568272693 568273073 0.000000e+00 671.0
11 TraesCS3D01G282300 chr7D 98.168 382 7 0 3187 3568 90588351 90588732 0.000000e+00 667.0
12 TraesCS3D01G282300 chr5D 98.163 381 7 0 3187 3567 42869237 42869617 0.000000e+00 665.0
13 TraesCS3D01G282300 chr5D 97.638 381 9 0 3188 3568 32932062 32931682 0.000000e+00 654.0
14 TraesCS3D01G282300 chr1D 98.158 380 7 0 3188 3567 18201107 18201486 0.000000e+00 664.0
15 TraesCS3D01G282300 chr6D 86.503 326 42 1 390 713 401735614 401735289 1.230000e-94 357.0
16 TraesCS3D01G282300 chr6D 86.928 153 17 3 222 372 401736120 401735969 6.180000e-38 169.0
17 TraesCS3D01G282300 chr6A 89.804 255 25 1 460 713 548109252 548108998 3.460000e-85 326.0
18 TraesCS3D01G282300 chr5A 80.000 225 27 9 1 216 514214353 514214138 2.240000e-32 150.0
19 TraesCS3D01G282300 chr2B 84.848 66 8 2 222 286 84009344 84009280 8.340000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G282300 chr3D 390409979 390413576 3597 False 6645.0 6645 100.0000 1 3598 1 chr3D.!!$F1 3597
1 TraesCS3D01G282300 chr3A 510827466 510830690 3224 False 2349.7 4641 96.4870 1 3598 2 chr3A.!!$F1 3597
2 TraesCS3D01G282300 chr3B 507496828 507498398 1570 False 2228.0 2228 92.4810 1627 3187 1 chr3B.!!$F1 1560
3 TraesCS3D01G282300 chr3B 507491202 507491981 779 False 644.0 1105 93.6590 822 1624 2 chr3B.!!$F2 802
4 TraesCS3D01G282300 chr6D 401735289 401736120 831 True 263.0 357 86.7155 222 713 2 chr6D.!!$R1 491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 1321 0.252197 ACCTAGGATCGCACAAACCC 59.748 55.0 17.98 0.0 0.0 4.11 F
963 1322 0.463833 CCTAGGATCGCACAAACCCC 60.464 60.0 1.05 0.0 0.0 4.95 F
964 1323 0.541863 CTAGGATCGCACAAACCCCT 59.458 55.0 0.00 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2315 2683 0.842030 TGTCCCTCTGCCATTCCTGT 60.842 55.000 0.00 0.0 0.00 4.00 R
2507 2875 1.490490 ACCACCAGCTGACTCTTGAAA 59.510 47.619 17.39 0.0 0.00 2.69 R
2711 3080 2.223782 GCTTCAGCCACATTTGACAACA 60.224 45.455 0.00 0.0 34.31 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 6.313519 AGAGAAACATAATCAAGTAGCCCA 57.686 37.500 0.00 0.00 0.00 5.36
84 85 2.522185 TCAAGTAGCCCACGAACTAGT 58.478 47.619 0.00 0.00 0.00 2.57
129 130 5.677319 TCTTTTGTCTAGATGGATTCCGT 57.323 39.130 0.00 0.00 0.00 4.69
167 168 4.389374 CGGTGCTATCCCATCTTGTAAAT 58.611 43.478 0.00 0.00 0.00 1.40
185 186 7.640616 TGTAAATGATGCAACAATTCTTGTG 57.359 32.000 0.00 0.00 44.59 3.33
319 321 0.981277 ACCTGGGGGTTCATCTACCG 60.981 60.000 0.00 0.00 44.73 4.02
332 334 7.043565 GGTTCATCTACCGAATTACAAACCTA 58.956 38.462 0.00 0.00 31.84 3.08
374 376 8.614469 AATTTAGCAATCTTATGAGCTACCTC 57.386 34.615 0.00 0.00 39.11 3.85
375 377 4.250116 AGCAATCTTATGAGCTACCTCG 57.750 45.455 0.00 0.00 41.13 4.63
385 387 2.263945 GAGCTACCTCGTTTGCTTCTC 58.736 52.381 0.00 0.00 35.76 2.87
399 738 6.801377 CGTTTGCTTCTCTATTACAATGCAAA 59.199 34.615 0.00 0.00 43.68 3.68
433 772 5.614324 TCCTATCATACCAGACAAAGTGG 57.386 43.478 0.00 0.00 41.30 4.00
442 783 3.327757 ACCAGACAAAGTGGAGCATTCTA 59.672 43.478 0.00 0.00 38.57 2.10
503 844 4.164030 TCCTGAGCAAGCATTAATCACCTA 59.836 41.667 0.00 0.00 0.00 3.08
650 991 1.677820 CGCCAAGAAGACCCCGTATTT 60.678 52.381 0.00 0.00 0.00 1.40
651 992 1.743394 GCCAAGAAGACCCCGTATTTG 59.257 52.381 0.00 0.00 0.00 2.32
656 997 2.500504 AGAAGACCCCGTATTTGTCTCC 59.499 50.000 0.00 0.00 38.36 3.71
661 1002 1.217882 CCCGTATTTGTCTCCGATGC 58.782 55.000 0.00 0.00 0.00 3.91
663 1004 1.202533 CCGTATTTGTCTCCGATGCCT 60.203 52.381 0.00 0.00 0.00 4.75
670 1011 3.790437 CTCCGATGCCTGCACCCT 61.790 66.667 0.00 0.00 0.00 4.34
791 1144 4.388773 TCGTTTTCTGTTGATGGAATCTCG 59.611 41.667 0.00 0.00 45.81 4.04
865 1220 1.025041 GAGATTGAAACCGGGCCATC 58.975 55.000 6.32 1.76 0.00 3.51
900 1255 2.429610 TCCTACACGGATCAGCCTTTAC 59.570 50.000 0.00 0.00 36.69 2.01
901 1256 2.483188 CCTACACGGATCAGCCTTTACC 60.483 54.545 0.00 0.00 33.16 2.85
902 1257 1.276622 ACACGGATCAGCCTTTACCT 58.723 50.000 0.00 0.00 0.00 3.08
903 1258 2.463752 ACACGGATCAGCCTTTACCTA 58.536 47.619 0.00 0.00 0.00 3.08
904 1259 2.431057 ACACGGATCAGCCTTTACCTAG 59.569 50.000 0.00 0.00 0.00 3.02
905 1260 2.040178 ACGGATCAGCCTTTACCTAGG 58.960 52.381 7.41 7.41 38.40 3.02
906 1261 2.317040 CGGATCAGCCTTTACCTAGGA 58.683 52.381 17.98 0.00 37.50 2.94
907 1262 2.900546 CGGATCAGCCTTTACCTAGGAT 59.099 50.000 17.98 2.10 37.50 3.24
908 1263 3.056465 CGGATCAGCCTTTACCTAGGATC 60.056 52.174 17.98 4.22 37.50 3.36
909 1264 4.164204 GGATCAGCCTTTACCTAGGATCT 58.836 47.826 17.98 0.00 37.50 2.75
910 1265 4.020662 GGATCAGCCTTTACCTAGGATCTG 60.021 50.000 17.98 12.03 37.50 2.90
911 1266 4.265856 TCAGCCTTTACCTAGGATCTGA 57.734 45.455 17.98 13.97 37.50 3.27
917 1276 4.038162 CCTTTACCTAGGATCTGAAGTCGG 59.962 50.000 17.98 0.00 37.50 4.79
953 1312 1.702886 CGCAGCAATACCTAGGATCG 58.297 55.000 17.98 1.67 0.00 3.69
957 1316 2.039418 AGCAATACCTAGGATCGCACA 58.961 47.619 17.98 0.00 0.00 4.57
958 1317 2.434336 AGCAATACCTAGGATCGCACAA 59.566 45.455 17.98 0.00 0.00 3.33
959 1318 3.118408 AGCAATACCTAGGATCGCACAAA 60.118 43.478 17.98 0.00 0.00 2.83
960 1319 3.002348 GCAATACCTAGGATCGCACAAAC 59.998 47.826 17.98 0.00 0.00 2.93
962 1321 0.252197 ACCTAGGATCGCACAAACCC 59.748 55.000 17.98 0.00 0.00 4.11
963 1322 0.463833 CCTAGGATCGCACAAACCCC 60.464 60.000 1.05 0.00 0.00 4.95
964 1323 0.541863 CTAGGATCGCACAAACCCCT 59.458 55.000 0.00 0.00 0.00 4.79
1174 1536 2.813179 CTCGATTTCAAGGCCGGCG 61.813 63.158 22.54 6.96 0.00 6.46
1296 1658 4.052229 CAGGACGAGGACGCCGTT 62.052 66.667 0.00 0.00 43.96 4.44
1606 1968 2.125326 CGCCTCCATGTCCGGTCTA 61.125 63.158 0.00 0.00 0.00 2.59
1760 2122 1.807142 GCTGGAGTTCTTTGGCTACAC 59.193 52.381 0.00 0.00 0.00 2.90
1824 2186 6.157994 TCACCAAGTTCAGGGTAAGCTTATAT 59.842 38.462 9.88 0.00 35.09 0.86
1825 2187 7.346175 TCACCAAGTTCAGGGTAAGCTTATATA 59.654 37.037 9.88 0.00 35.09 0.86
1857 2219 5.115480 TGAAGCAACCAAAAATTGACCTTC 58.885 37.500 0.00 0.00 0.00 3.46
1954 2319 2.877097 TTATGCCAAGCCTCAAGACA 57.123 45.000 0.00 0.00 0.00 3.41
1960 2325 1.354040 CAAGCCTCAAGACACTAGCG 58.646 55.000 0.00 0.00 0.00 4.26
2015 2380 5.060506 TCAACGAACATTACATCAACTGGT 58.939 37.500 0.00 0.00 0.00 4.00
2027 2392 3.138884 TCAACTGGTTTATGCAGCTGA 57.861 42.857 20.43 2.70 0.00 4.26
2176 2544 1.683943 ATTCGCATTGGTGGATCCTG 58.316 50.000 14.23 3.21 37.07 3.86
2229 2597 3.371063 GGTCCGAGGCTCGTGACA 61.371 66.667 36.22 19.85 39.83 3.58
2255 2623 2.361610 GGGTCGTGGGACGTCCTA 60.362 66.667 32.52 25.88 46.37 2.94
2315 2683 2.288395 GGTGTTCGAAGTTTACCGAGGA 60.288 50.000 0.00 0.00 36.11 3.71
2321 2689 2.029649 CGAAGTTTACCGAGGACAGGAA 60.030 50.000 0.00 0.00 0.00 3.36
2507 2875 3.855858 GAGAGATGCTCGTTTCCTCTTT 58.144 45.455 0.00 0.00 34.67 2.52
2634 3003 2.153645 TGCATAGAGTTGGCACACTTG 58.846 47.619 0.00 0.00 39.29 3.16
2647 3016 4.515191 TGGCACACTTGAGTTACATTCTTC 59.485 41.667 0.00 0.00 0.00 2.87
2702 3071 9.483062 GTGAAAATTGAGAATTCAAGATAGACG 57.517 33.333 8.44 0.00 45.89 4.18
2711 3080 7.162082 AGAATTCAAGATAGACGGTGTTTCTT 58.838 34.615 8.44 5.39 0.00 2.52
2744 3117 1.673168 GCTGAAGCATAGGGAGTTGG 58.327 55.000 0.00 0.00 41.59 3.77
2746 3119 0.255890 TGAAGCATAGGGAGTTGGCC 59.744 55.000 0.00 0.00 0.00 5.36
2747 3120 0.548510 GAAGCATAGGGAGTTGGCCT 59.451 55.000 3.32 0.00 0.00 5.19
2748 3121 1.002857 AAGCATAGGGAGTTGGCCTT 58.997 50.000 3.32 0.00 0.00 4.35
2750 3123 0.548510 GCATAGGGAGTTGGCCTTCT 59.451 55.000 3.32 1.42 0.00 2.85
2751 3124 1.064389 GCATAGGGAGTTGGCCTTCTT 60.064 52.381 3.32 0.00 0.00 2.52
2752 3125 2.172717 GCATAGGGAGTTGGCCTTCTTA 59.827 50.000 3.32 0.00 0.00 2.10
2866 3240 2.705934 ATAGCTCCGCGTCTGCCATG 62.706 60.000 4.92 0.00 38.08 3.66
2922 3296 4.994907 TGAATCATGAGGAAATTGCTGG 57.005 40.909 0.09 0.00 0.00 4.85
2942 3316 5.632347 GCTGGAAAATTGACTGTGATTCAAG 59.368 40.000 0.00 0.00 36.44 3.02
3006 3389 3.336468 GCCCTCAGATATCATCAGCTTG 58.664 50.000 5.32 0.00 0.00 4.01
3013 3396 4.695928 CAGATATCATCAGCTTGGACATGG 59.304 45.833 5.32 0.00 0.00 3.66
3043 3426 6.076981 ACTTTCTGAATCATTTGTCACACC 57.923 37.500 0.00 0.00 0.00 4.16
3044 3427 5.010012 ACTTTCTGAATCATTTGTCACACCC 59.990 40.000 0.00 0.00 0.00 4.61
3045 3428 3.073678 TCTGAATCATTTGTCACACCCG 58.926 45.455 0.00 0.00 0.00 5.28
3046 3429 2.158559 TGAATCATTTGTCACACCCGG 58.841 47.619 0.00 0.00 0.00 5.73
3047 3430 2.159382 GAATCATTTGTCACACCCGGT 58.841 47.619 0.00 0.00 0.00 5.28
3048 3431 2.286365 ATCATTTGTCACACCCGGTT 57.714 45.000 0.00 0.00 0.00 4.44
3049 3432 1.313772 TCATTTGTCACACCCGGTTG 58.686 50.000 0.00 0.00 0.00 3.77
3050 3433 1.028905 CATTTGTCACACCCGGTTGT 58.971 50.000 0.00 0.00 0.00 3.32
3051 3434 1.001815 CATTTGTCACACCCGGTTGTC 60.002 52.381 0.00 0.00 0.00 3.18
3052 3435 0.035343 TTTGTCACACCCGGTTGTCA 60.035 50.000 0.00 0.00 0.00 3.58
3053 3436 0.035343 TTGTCACACCCGGTTGTCAA 60.035 50.000 0.00 1.44 0.00 3.18
3054 3437 0.035343 TGTCACACCCGGTTGTCAAA 60.035 50.000 0.00 0.00 0.00 2.69
3055 3438 0.379316 GTCACACCCGGTTGTCAAAC 59.621 55.000 0.00 0.00 35.40 2.93
3080 3463 6.337356 CCGGTGGTGCTTTATTCATTATTTT 58.663 36.000 0.00 0.00 0.00 1.82
3096 3479 9.638239 TTCATTATTTTCCAAGTACTGATTTGC 57.362 29.630 0.00 0.00 0.00 3.68
3101 3484 7.994425 TTTTCCAAGTACTGATTTGCTATGA 57.006 32.000 0.00 0.00 0.00 2.15
3102 3485 7.994425 TTTCCAAGTACTGATTTGCTATGAA 57.006 32.000 0.00 0.00 0.00 2.57
3103 3486 6.985188 TCCAAGTACTGATTTGCTATGAAC 57.015 37.500 0.00 0.00 0.00 3.18
3104 3487 6.711277 TCCAAGTACTGATTTGCTATGAACT 58.289 36.000 0.00 0.00 0.00 3.01
3105 3488 7.168219 TCCAAGTACTGATTTGCTATGAACTT 58.832 34.615 0.00 0.00 0.00 2.66
3106 3489 7.119699 TCCAAGTACTGATTTGCTATGAACTTG 59.880 37.037 0.00 0.00 40.42 3.16
3107 3490 6.428385 AGTACTGATTTGCTATGAACTTGC 57.572 37.500 0.00 0.00 0.00 4.01
3155 3560 2.093537 TTGGTGCAACAAATCGCCCC 62.094 55.000 16.46 0.00 39.98 5.80
3159 3564 2.414785 GCAACAAATCGCCCCGGAT 61.415 57.895 0.73 0.00 0.00 4.18
3164 3569 0.100503 CAAATCGCCCCGGATTTCAC 59.899 55.000 0.73 0.00 42.99 3.18
3179 3584 5.455392 GGATTTCACAGTGACATGTTTCAG 58.545 41.667 6.94 0.00 0.00 3.02
3180 3585 4.898829 TTTCACAGTGACATGTTTCAGG 57.101 40.909 1.52 0.00 0.00 3.86
3181 3586 3.558931 TCACAGTGACATGTTTCAGGT 57.441 42.857 0.00 0.00 0.00 4.00
3182 3587 3.466836 TCACAGTGACATGTTTCAGGTC 58.533 45.455 0.00 7.45 44.10 3.85
3183 3588 2.221749 CACAGTGACATGTTTCAGGTCG 59.778 50.000 0.00 0.01 46.33 4.79
3184 3589 2.158957 ACAGTGACATGTTTCAGGTCGT 60.159 45.455 0.00 0.53 46.33 4.34
3185 3590 3.069016 ACAGTGACATGTTTCAGGTCGTA 59.931 43.478 0.00 0.00 46.33 3.43
3186 3591 3.675225 CAGTGACATGTTTCAGGTCGTAG 59.325 47.826 0.00 0.00 46.33 3.51
3187 3592 2.412089 GTGACATGTTTCAGGTCGTAGC 59.588 50.000 0.00 0.00 46.33 3.58
3188 3593 2.036604 TGACATGTTTCAGGTCGTAGCA 59.963 45.455 0.00 0.00 46.33 3.49
3189 3594 3.064207 GACATGTTTCAGGTCGTAGCAA 58.936 45.455 0.00 0.00 35.55 3.91
3190 3595 3.067106 ACATGTTTCAGGTCGTAGCAAG 58.933 45.455 0.00 0.00 0.00 4.01
3191 3596 2.163818 TGTTTCAGGTCGTAGCAAGG 57.836 50.000 0.00 0.00 0.00 3.61
3192 3597 1.414919 TGTTTCAGGTCGTAGCAAGGT 59.585 47.619 0.00 0.00 0.00 3.50
3193 3598 2.158871 TGTTTCAGGTCGTAGCAAGGTT 60.159 45.455 0.00 0.00 0.00 3.50
3194 3599 2.876550 GTTTCAGGTCGTAGCAAGGTTT 59.123 45.455 0.00 0.00 0.00 3.27
3195 3600 2.922740 TCAGGTCGTAGCAAGGTTTT 57.077 45.000 0.00 0.00 0.00 2.43
3196 3601 2.489971 TCAGGTCGTAGCAAGGTTTTG 58.510 47.619 0.00 0.00 37.36 2.44
3197 3602 1.535462 CAGGTCGTAGCAAGGTTTTGG 59.465 52.381 0.00 0.00 34.79 3.28
3198 3603 1.142262 AGGTCGTAGCAAGGTTTTGGT 59.858 47.619 0.00 0.00 46.13 3.67
3199 3604 1.951602 GGTCGTAGCAAGGTTTTGGTT 59.048 47.619 0.00 0.00 42.03 3.67
3200 3605 3.140623 GGTCGTAGCAAGGTTTTGGTTA 58.859 45.455 0.00 0.00 42.03 2.85
3201 3606 3.058708 GGTCGTAGCAAGGTTTTGGTTAC 60.059 47.826 0.00 0.00 42.03 2.50
3202 3607 3.058708 GTCGTAGCAAGGTTTTGGTTACC 60.059 47.826 0.00 0.00 42.03 2.85
3203 3608 2.879646 CGTAGCAAGGTTTTGGTTACCA 59.120 45.455 0.00 0.00 42.03 3.25
3204 3609 3.058501 CGTAGCAAGGTTTTGGTTACCAG 60.059 47.826 3.65 0.00 42.03 4.00
3205 3610 3.026707 AGCAAGGTTTTGGTTACCAGT 57.973 42.857 3.65 0.00 42.03 4.00
3206 3611 2.956333 AGCAAGGTTTTGGTTACCAGTC 59.044 45.455 3.65 0.00 42.03 3.51
3207 3612 2.287368 GCAAGGTTTTGGTTACCAGTCG 60.287 50.000 3.65 0.00 38.16 4.18
3208 3613 3.207778 CAAGGTTTTGGTTACCAGTCGA 58.792 45.455 3.65 0.00 38.16 4.20
3209 3614 3.564053 AGGTTTTGGTTACCAGTCGAA 57.436 42.857 3.65 0.00 38.16 3.71
3210 3615 3.888583 AGGTTTTGGTTACCAGTCGAAA 58.111 40.909 3.65 0.00 38.16 3.46
3211 3616 4.466827 AGGTTTTGGTTACCAGTCGAAAT 58.533 39.130 3.65 0.00 38.16 2.17
3212 3617 4.891168 AGGTTTTGGTTACCAGTCGAAATT 59.109 37.500 3.65 0.00 38.16 1.82
3213 3618 5.361571 AGGTTTTGGTTACCAGTCGAAATTT 59.638 36.000 3.65 0.00 38.16 1.82
3214 3619 5.688621 GGTTTTGGTTACCAGTCGAAATTTC 59.311 40.000 3.65 8.20 33.81 2.17
3215 3620 6.267070 GTTTTGGTTACCAGTCGAAATTTCA 58.733 36.000 17.99 2.95 33.81 2.69
3216 3621 6.452494 TTTGGTTACCAGTCGAAATTTCAA 57.548 33.333 17.99 0.00 33.81 2.69
3217 3622 5.682943 TGGTTACCAGTCGAAATTTCAAG 57.317 39.130 17.99 3.07 0.00 3.02
3218 3623 5.369833 TGGTTACCAGTCGAAATTTCAAGA 58.630 37.500 17.99 5.43 0.00 3.02
3219 3624 6.001460 TGGTTACCAGTCGAAATTTCAAGAT 58.999 36.000 17.99 1.22 0.00 2.40
3220 3625 6.488683 TGGTTACCAGTCGAAATTTCAAGATT 59.511 34.615 17.99 2.59 0.00 2.40
3221 3626 7.013846 TGGTTACCAGTCGAAATTTCAAGATTT 59.986 33.333 17.99 0.99 32.16 2.17
3222 3627 7.537649 GGTTACCAGTCGAAATTTCAAGATTTC 59.462 37.037 17.99 0.00 40.80 2.17
3223 3628 6.013842 ACCAGTCGAAATTTCAAGATTTCC 57.986 37.500 17.99 0.00 41.02 3.13
3224 3629 5.048013 ACCAGTCGAAATTTCAAGATTTCCC 60.048 40.000 17.99 0.00 41.02 3.97
3225 3630 5.048083 CCAGTCGAAATTTCAAGATTTCCCA 60.048 40.000 17.99 0.00 41.02 4.37
3226 3631 6.350445 CCAGTCGAAATTTCAAGATTTCCCAT 60.350 38.462 17.99 0.00 41.02 4.00
3227 3632 6.529125 CAGTCGAAATTTCAAGATTTCCCATG 59.471 38.462 17.99 0.00 41.02 3.66
3228 3633 5.807011 GTCGAAATTTCAAGATTTCCCATGG 59.193 40.000 17.99 4.14 41.02 3.66
3229 3634 5.480073 TCGAAATTTCAAGATTTCCCATGGT 59.520 36.000 17.99 0.00 41.02 3.55
3230 3635 6.014669 TCGAAATTTCAAGATTTCCCATGGTT 60.015 34.615 17.99 0.00 41.02 3.67
3231 3636 7.177568 TCGAAATTTCAAGATTTCCCATGGTTA 59.822 33.333 17.99 0.00 41.02 2.85
3232 3637 7.275560 CGAAATTTCAAGATTTCCCATGGTTAC 59.724 37.037 17.99 0.00 41.02 2.50
3233 3638 5.993748 TTTCAAGATTTCCCATGGTTACC 57.006 39.130 11.73 0.00 0.00 2.85
3234 3639 3.616219 TCAAGATTTCCCATGGTTACCG 58.384 45.455 11.73 0.00 0.00 4.02
3235 3640 3.009695 TCAAGATTTCCCATGGTTACCGT 59.990 43.478 11.73 0.00 0.00 4.83
3236 3641 2.999331 AGATTTCCCATGGTTACCGTG 58.001 47.619 16.22 16.22 40.02 4.94
3237 3642 2.307686 AGATTTCCCATGGTTACCGTGT 59.692 45.455 20.69 3.25 38.76 4.49
3238 3643 3.520317 AGATTTCCCATGGTTACCGTGTA 59.480 43.478 20.69 7.25 38.76 2.90
3239 3644 4.165372 AGATTTCCCATGGTTACCGTGTAT 59.835 41.667 20.69 9.44 38.76 2.29
3240 3645 4.304048 TTTCCCATGGTTACCGTGTATT 57.696 40.909 20.69 0.00 38.76 1.89
3241 3646 4.304048 TTCCCATGGTTACCGTGTATTT 57.696 40.909 20.69 0.00 38.76 1.40
3242 3647 3.876341 TCCCATGGTTACCGTGTATTTC 58.124 45.455 20.69 0.00 38.76 2.17
3243 3648 2.946990 CCCATGGTTACCGTGTATTTCC 59.053 50.000 20.69 0.00 38.76 3.13
3244 3649 2.610374 CCATGGTTACCGTGTATTTCCG 59.390 50.000 20.69 1.61 38.76 4.30
3245 3650 3.264104 CATGGTTACCGTGTATTTCCGT 58.736 45.455 15.05 0.00 35.92 4.69
3246 3651 2.686235 TGGTTACCGTGTATTTCCGTG 58.314 47.619 0.00 0.00 0.00 4.94
3247 3652 1.394572 GGTTACCGTGTATTTCCGTGC 59.605 52.381 0.00 0.00 0.00 5.34
3248 3653 1.394572 GTTACCGTGTATTTCCGTGCC 59.605 52.381 0.00 0.00 0.00 5.01
3249 3654 0.108233 TACCGTGTATTTCCGTGCCC 60.108 55.000 0.00 0.00 0.00 5.36
3250 3655 2.110352 CCGTGTATTTCCGTGCCCC 61.110 63.158 0.00 0.00 0.00 5.80
3251 3656 1.078708 CGTGTATTTCCGTGCCCCT 60.079 57.895 0.00 0.00 0.00 4.79
3252 3657 1.087771 CGTGTATTTCCGTGCCCCTC 61.088 60.000 0.00 0.00 0.00 4.30
3253 3658 1.087771 GTGTATTTCCGTGCCCCTCG 61.088 60.000 0.00 0.00 0.00 4.63
3255 3660 1.991167 TATTTCCGTGCCCCTCGGT 60.991 57.895 4.36 0.00 46.86 4.69
3256 3661 0.687098 TATTTCCGTGCCCCTCGGTA 60.687 55.000 4.36 0.00 46.86 4.02
3257 3662 1.555477 ATTTCCGTGCCCCTCGGTAA 61.555 55.000 4.36 1.98 46.86 2.85
3258 3663 1.766625 TTTCCGTGCCCCTCGGTAAA 61.767 55.000 4.36 2.21 46.86 2.01
3259 3664 1.555477 TTCCGTGCCCCTCGGTAAAT 61.555 55.000 4.36 0.00 46.86 1.40
3260 3665 1.523032 CCGTGCCCCTCGGTAAATC 60.523 63.158 0.00 0.00 42.62 2.17
3261 3666 1.523032 CGTGCCCCTCGGTAAATCC 60.523 63.158 0.00 0.00 0.00 3.01
3262 3667 1.605453 GTGCCCCTCGGTAAATCCA 59.395 57.895 0.00 0.00 35.57 3.41
3263 3668 0.746923 GTGCCCCTCGGTAAATCCAC 60.747 60.000 0.00 0.00 35.57 4.02
3264 3669 1.202099 TGCCCCTCGGTAAATCCACA 61.202 55.000 0.00 0.00 35.57 4.17
3265 3670 0.182775 GCCCCTCGGTAAATCCACAT 59.817 55.000 0.00 0.00 35.57 3.21
3266 3671 1.418637 GCCCCTCGGTAAATCCACATA 59.581 52.381 0.00 0.00 35.57 2.29
3267 3672 2.809299 GCCCCTCGGTAAATCCACATAC 60.809 54.545 0.00 0.00 35.57 2.39
3268 3673 2.224450 CCCCTCGGTAAATCCACATACC 60.224 54.545 0.00 0.00 38.55 2.73
3273 3678 3.188159 GGTAAATCCACATACCGAGCA 57.812 47.619 0.00 0.00 32.84 4.26
3274 3679 3.537580 GGTAAATCCACATACCGAGCAA 58.462 45.455 0.00 0.00 32.84 3.91
3275 3680 3.942748 GGTAAATCCACATACCGAGCAAA 59.057 43.478 0.00 0.00 32.84 3.68
3276 3681 4.396790 GGTAAATCCACATACCGAGCAAAA 59.603 41.667 0.00 0.00 32.84 2.44
3277 3682 5.106078 GGTAAATCCACATACCGAGCAAAAA 60.106 40.000 0.00 0.00 32.84 1.94
3315 3720 8.964367 TTGAAAATTTTGAATTTTAACGCTCG 57.036 26.923 8.47 0.00 32.03 5.03
3316 3721 8.341477 TGAAAATTTTGAATTTTAACGCTCGA 57.659 26.923 8.47 0.00 32.03 4.04
3317 3722 8.973378 TGAAAATTTTGAATTTTAACGCTCGAT 58.027 25.926 8.47 0.00 32.03 3.59
3318 3723 9.791838 GAAAATTTTGAATTTTAACGCTCGATT 57.208 25.926 8.47 0.00 32.03 3.34
3320 3725 9.579610 AAATTTTGAATTTTAACGCTCGATTTG 57.420 25.926 0.00 0.00 0.00 2.32
3321 3726 7.687005 TTTTGAATTTTAACGCTCGATTTGT 57.313 28.000 0.00 0.00 0.00 2.83
3322 3727 8.783999 TTTTGAATTTTAACGCTCGATTTGTA 57.216 26.923 0.00 0.00 0.00 2.41
3323 3728 8.429739 TTTGAATTTTAACGCTCGATTTGTAG 57.570 30.769 0.00 0.00 0.00 2.74
3324 3729 7.124347 TGAATTTTAACGCTCGATTTGTAGT 57.876 32.000 0.00 0.00 0.00 2.73
3325 3730 8.242085 TGAATTTTAACGCTCGATTTGTAGTA 57.758 30.769 0.00 0.00 0.00 1.82
3326 3731 8.710551 TGAATTTTAACGCTCGATTTGTAGTAA 58.289 29.630 0.00 0.00 0.00 2.24
3327 3732 9.532697 GAATTTTAACGCTCGATTTGTAGTAAA 57.467 29.630 0.00 0.00 0.00 2.01
3328 3733 9.537848 AATTTTAACGCTCGATTTGTAGTAAAG 57.462 29.630 0.00 0.00 0.00 1.85
3329 3734 7.642071 TTTAACGCTCGATTTGTAGTAAAGT 57.358 32.000 0.00 0.00 0.00 2.66
3330 3735 5.511088 AACGCTCGATTTGTAGTAAAGTG 57.489 39.130 0.00 0.00 0.00 3.16
3331 3736 3.367025 ACGCTCGATTTGTAGTAAAGTGC 59.633 43.478 0.00 0.00 0.00 4.40
3332 3737 3.241995 CGCTCGATTTGTAGTAAAGTGCC 60.242 47.826 0.00 0.00 0.00 5.01
3333 3738 3.933332 GCTCGATTTGTAGTAAAGTGCCT 59.067 43.478 0.00 0.00 0.00 4.75
3334 3739 5.107133 GCTCGATTTGTAGTAAAGTGCCTA 58.893 41.667 0.00 0.00 0.00 3.93
3335 3740 5.232414 GCTCGATTTGTAGTAAAGTGCCTAG 59.768 44.000 0.00 0.00 0.00 3.02
3336 3741 5.657474 TCGATTTGTAGTAAAGTGCCTAGG 58.343 41.667 3.67 3.67 0.00 3.02
3337 3742 5.419788 TCGATTTGTAGTAAAGTGCCTAGGA 59.580 40.000 14.75 0.00 0.00 2.94
3338 3743 6.097839 TCGATTTGTAGTAAAGTGCCTAGGAT 59.902 38.462 14.75 0.00 0.00 3.24
3339 3744 6.421202 CGATTTGTAGTAAAGTGCCTAGGATC 59.579 42.308 14.75 4.08 0.00 3.36
3340 3745 6.869206 TTTGTAGTAAAGTGCCTAGGATCT 57.131 37.500 14.75 6.65 0.00 2.75
3341 3746 7.966339 TTTGTAGTAAAGTGCCTAGGATCTA 57.034 36.000 14.75 0.91 0.00 1.98
3342 3747 7.966339 TTGTAGTAAAGTGCCTAGGATCTAA 57.034 36.000 14.75 0.00 0.00 2.10
3343 3748 8.548880 TTGTAGTAAAGTGCCTAGGATCTAAT 57.451 34.615 14.75 5.24 0.00 1.73
3344 3749 8.548880 TGTAGTAAAGTGCCTAGGATCTAATT 57.451 34.615 14.75 4.62 0.00 1.40
3345 3750 9.650714 TGTAGTAAAGTGCCTAGGATCTAATTA 57.349 33.333 14.75 3.70 0.00 1.40
3349 3754 7.751768 AAAGTGCCTAGGATCTAATTAATGC 57.248 36.000 14.75 0.00 0.00 3.56
3350 3755 6.439636 AGTGCCTAGGATCTAATTAATGCA 57.560 37.500 14.75 0.00 0.00 3.96
3351 3756 6.841601 AGTGCCTAGGATCTAATTAATGCAA 58.158 36.000 14.75 0.00 0.00 4.08
3352 3757 6.939163 AGTGCCTAGGATCTAATTAATGCAAG 59.061 38.462 14.75 0.00 0.00 4.01
3353 3758 6.150140 GTGCCTAGGATCTAATTAATGCAAGG 59.850 42.308 14.75 0.00 0.00 3.61
3354 3759 6.044287 TGCCTAGGATCTAATTAATGCAAGGA 59.956 38.462 14.75 0.00 0.00 3.36
3355 3760 6.597280 GCCTAGGATCTAATTAATGCAAGGAG 59.403 42.308 14.75 0.00 0.00 3.69
3356 3761 7.527868 GCCTAGGATCTAATTAATGCAAGGAGA 60.528 40.741 14.75 0.00 0.00 3.71
3357 3762 8.040132 CCTAGGATCTAATTAATGCAAGGAGAG 58.960 40.741 1.05 0.00 0.00 3.20
3358 3763 7.385894 AGGATCTAATTAATGCAAGGAGAGT 57.614 36.000 0.00 0.00 0.00 3.24
3359 3764 7.810260 AGGATCTAATTAATGCAAGGAGAGTT 58.190 34.615 0.00 0.00 0.00 3.01
3360 3765 7.718753 AGGATCTAATTAATGCAAGGAGAGTTG 59.281 37.037 0.00 0.00 0.00 3.16
3361 3766 7.716998 GGATCTAATTAATGCAAGGAGAGTTGA 59.283 37.037 0.00 0.00 0.00 3.18
3362 3767 9.282569 GATCTAATTAATGCAAGGAGAGTTGAT 57.717 33.333 0.00 0.00 0.00 2.57
3363 3768 9.638176 ATCTAATTAATGCAAGGAGAGTTGATT 57.362 29.630 0.00 0.00 0.00 2.57
3364 3769 9.113838 TCTAATTAATGCAAGGAGAGTTGATTC 57.886 33.333 0.00 0.00 0.00 2.52
3365 3770 7.951347 AATTAATGCAAGGAGAGTTGATTCT 57.049 32.000 0.00 0.00 0.00 2.40
3366 3771 6.748333 TTAATGCAAGGAGAGTTGATTCTG 57.252 37.500 0.00 0.00 0.00 3.02
3367 3772 4.564782 ATGCAAGGAGAGTTGATTCTGA 57.435 40.909 0.00 0.00 0.00 3.27
3368 3773 3.668447 TGCAAGGAGAGTTGATTCTGAC 58.332 45.455 0.00 0.00 0.00 3.51
3369 3774 2.670414 GCAAGGAGAGTTGATTCTGACG 59.330 50.000 0.00 0.00 0.00 4.35
3370 3775 3.862642 GCAAGGAGAGTTGATTCTGACGT 60.863 47.826 0.00 0.00 0.00 4.34
3371 3776 3.584406 AGGAGAGTTGATTCTGACGTG 57.416 47.619 0.00 0.00 0.00 4.49
3372 3777 2.894126 AGGAGAGTTGATTCTGACGTGT 59.106 45.455 0.00 0.00 0.00 4.49
3373 3778 3.322254 AGGAGAGTTGATTCTGACGTGTT 59.678 43.478 0.00 0.00 0.00 3.32
3374 3779 3.675698 GGAGAGTTGATTCTGACGTGTTC 59.324 47.826 0.00 0.00 0.00 3.18
3375 3780 4.299155 GAGAGTTGATTCTGACGTGTTCA 58.701 43.478 0.00 0.00 0.00 3.18
3376 3781 4.887748 AGAGTTGATTCTGACGTGTTCAT 58.112 39.130 0.00 0.00 32.17 2.57
3377 3782 6.025749 AGAGTTGATTCTGACGTGTTCATA 57.974 37.500 0.00 0.00 32.17 2.15
3378 3783 6.096036 AGAGTTGATTCTGACGTGTTCATAG 58.904 40.000 0.00 0.00 32.17 2.23
3379 3784 4.627467 AGTTGATTCTGACGTGTTCATAGC 59.373 41.667 0.00 0.00 32.17 2.97
3380 3785 4.186856 TGATTCTGACGTGTTCATAGCA 57.813 40.909 0.00 0.00 32.17 3.49
3381 3786 4.565022 TGATTCTGACGTGTTCATAGCAA 58.435 39.130 0.00 0.00 32.17 3.91
3382 3787 4.388773 TGATTCTGACGTGTTCATAGCAAC 59.611 41.667 0.00 0.00 32.17 4.17
3383 3788 2.683968 TCTGACGTGTTCATAGCAACC 58.316 47.619 0.00 0.00 32.17 3.77
3384 3789 2.299013 TCTGACGTGTTCATAGCAACCT 59.701 45.455 0.00 0.00 32.17 3.50
3385 3790 3.508402 TCTGACGTGTTCATAGCAACCTA 59.492 43.478 0.00 0.00 32.17 3.08
3386 3791 3.845178 TGACGTGTTCATAGCAACCTAG 58.155 45.455 0.00 0.00 0.00 3.02
3387 3792 3.257375 TGACGTGTTCATAGCAACCTAGT 59.743 43.478 0.00 0.00 0.00 2.57
3388 3793 4.243270 GACGTGTTCATAGCAACCTAGTT 58.757 43.478 0.00 0.00 0.00 2.24
3389 3794 4.243270 ACGTGTTCATAGCAACCTAGTTC 58.757 43.478 0.00 0.00 0.00 3.01
3390 3795 3.617263 CGTGTTCATAGCAACCTAGTTCC 59.383 47.826 0.00 0.00 0.00 3.62
3391 3796 4.620803 CGTGTTCATAGCAACCTAGTTCCT 60.621 45.833 0.00 0.00 0.00 3.36
3392 3797 4.631813 GTGTTCATAGCAACCTAGTTCCTG 59.368 45.833 0.00 0.00 0.00 3.86
3393 3798 4.286032 TGTTCATAGCAACCTAGTTCCTGT 59.714 41.667 0.00 0.00 0.00 4.00
3394 3799 5.221843 TGTTCATAGCAACCTAGTTCCTGTT 60.222 40.000 0.00 0.00 0.00 3.16
3395 3800 5.499004 TCATAGCAACCTAGTTCCTGTTT 57.501 39.130 0.00 0.00 0.00 2.83
3396 3801 5.876357 TCATAGCAACCTAGTTCCTGTTTT 58.124 37.500 0.00 0.00 0.00 2.43
3397 3802 5.705441 TCATAGCAACCTAGTTCCTGTTTTG 59.295 40.000 0.00 0.00 0.00 2.44
3398 3803 4.164843 AGCAACCTAGTTCCTGTTTTGA 57.835 40.909 0.00 0.00 0.00 2.69
3399 3804 3.883489 AGCAACCTAGTTCCTGTTTTGAC 59.117 43.478 0.00 0.00 0.00 3.18
3400 3805 3.630312 GCAACCTAGTTCCTGTTTTGACA 59.370 43.478 0.00 0.00 0.00 3.58
3401 3806 4.261197 GCAACCTAGTTCCTGTTTTGACAG 60.261 45.833 0.00 0.00 37.48 3.51
3411 3816 4.718940 CTGTTTTGACAGGTCTTTGGTT 57.281 40.909 0.65 0.00 34.28 3.67
3412 3817 5.072040 CTGTTTTGACAGGTCTTTGGTTT 57.928 39.130 0.65 0.00 34.28 3.27
3413 3818 4.815269 TGTTTTGACAGGTCTTTGGTTTG 58.185 39.130 0.65 0.00 0.00 2.93
3414 3819 4.524714 TGTTTTGACAGGTCTTTGGTTTGA 59.475 37.500 0.65 0.00 0.00 2.69
3415 3820 5.011125 TGTTTTGACAGGTCTTTGGTTTGAA 59.989 36.000 0.65 0.00 0.00 2.69
3416 3821 5.930837 TTTGACAGGTCTTTGGTTTGAAT 57.069 34.783 0.65 0.00 0.00 2.57
3417 3822 4.916983 TGACAGGTCTTTGGTTTGAATG 57.083 40.909 0.65 0.00 0.00 2.67
3418 3823 4.277476 TGACAGGTCTTTGGTTTGAATGT 58.723 39.130 0.65 0.00 0.00 2.71
3419 3824 4.709397 TGACAGGTCTTTGGTTTGAATGTT 59.291 37.500 0.65 0.00 0.00 2.71
3420 3825 5.163561 TGACAGGTCTTTGGTTTGAATGTTC 60.164 40.000 0.65 0.00 0.00 3.18
3421 3826 4.202010 ACAGGTCTTTGGTTTGAATGTTCG 60.202 41.667 0.00 0.00 0.00 3.95
3422 3827 3.951680 AGGTCTTTGGTTTGAATGTTCGT 59.048 39.130 0.00 0.00 0.00 3.85
3423 3828 4.401202 AGGTCTTTGGTTTGAATGTTCGTT 59.599 37.500 0.00 0.00 0.00 3.85
3424 3829 4.738252 GGTCTTTGGTTTGAATGTTCGTTC 59.262 41.667 0.00 0.00 0.00 3.95
3425 3830 5.336744 GTCTTTGGTTTGAATGTTCGTTCA 58.663 37.500 3.68 3.68 36.38 3.18
3426 3831 5.977129 GTCTTTGGTTTGAATGTTCGTTCAT 59.023 36.000 8.05 0.00 37.88 2.57
3427 3832 6.475402 GTCTTTGGTTTGAATGTTCGTTCATT 59.525 34.615 8.05 7.33 37.88 2.57
3480 3885 6.657836 AAATTCGTTCGAAATATTCTCGGT 57.342 33.333 11.50 0.00 36.93 4.69
3481 3886 7.760131 AAATTCGTTCGAAATATTCTCGGTA 57.240 32.000 11.50 6.19 36.93 4.02
3482 3887 7.941795 AATTCGTTCGAAATATTCTCGGTAT 57.058 32.000 11.50 0.00 36.93 2.73
3483 3888 7.941795 ATTCGTTCGAAATATTCTCGGTATT 57.058 32.000 11.50 0.00 36.93 1.89
3484 3889 7.760131 TTCGTTCGAAATATTCTCGGTATTT 57.240 32.000 0.00 0.00 36.93 1.40
3485 3890 7.385668 TCGTTCGAAATATTCTCGGTATTTC 57.614 36.000 0.00 8.01 41.66 2.17
3486 3891 7.198390 TCGTTCGAAATATTCTCGGTATTTCT 58.802 34.615 0.00 0.00 42.35 2.52
3487 3892 7.377928 TCGTTCGAAATATTCTCGGTATTTCTC 59.622 37.037 0.00 6.33 42.35 2.87
3488 3893 7.491683 GTTCGAAATATTCTCGGTATTTCTCG 58.508 38.462 0.00 6.03 42.35 4.04
3489 3894 6.147581 TCGAAATATTCTCGGTATTTCTCGG 58.852 40.000 15.30 3.07 42.35 4.63
3490 3895 5.919141 CGAAATATTCTCGGTATTTCTCGGT 59.081 40.000 13.53 0.00 42.35 4.69
3491 3896 7.041167 TCGAAATATTCTCGGTATTTCTCGGTA 60.041 37.037 15.30 0.00 42.35 4.02
3492 3897 7.754027 CGAAATATTCTCGGTATTTCTCGGTAT 59.246 37.037 13.53 0.00 42.35 2.73
3493 3898 9.420551 GAAATATTCTCGGTATTTCTCGGTATT 57.579 33.333 9.99 0.00 41.76 1.89
3494 3899 9.774413 AAATATTCTCGGTATTTCTCGGTATTT 57.226 29.630 0.00 0.00 28.29 1.40
3495 3900 8.983307 ATATTCTCGGTATTTCTCGGTATTTC 57.017 34.615 0.00 0.00 0.00 2.17
3496 3901 5.192327 TCTCGGTATTTCTCGGTATTTCC 57.808 43.478 0.00 0.00 0.00 3.13
3497 3902 4.038402 TCTCGGTATTTCTCGGTATTTCCC 59.962 45.833 0.00 0.00 0.00 3.97
3506 3911 0.175531 CGGTATTTCCCGGTAACCGT 59.824 55.000 17.24 0.00 46.80 4.83
3507 3912 1.655484 GGTATTTCCCGGTAACCGTG 58.345 55.000 0.00 0.00 46.80 4.94
3508 3913 1.655484 GTATTTCCCGGTAACCGTGG 58.345 55.000 0.00 0.00 46.80 4.94
3509 3914 1.066215 GTATTTCCCGGTAACCGTGGT 60.066 52.381 0.00 0.00 46.80 4.16
3510 3915 1.274712 ATTTCCCGGTAACCGTGGTA 58.725 50.000 0.00 0.00 46.80 3.25
3511 3916 1.051812 TTTCCCGGTAACCGTGGTAA 58.948 50.000 0.00 0.00 46.80 2.85
3512 3917 0.320050 TTCCCGGTAACCGTGGTAAC 59.680 55.000 0.00 0.00 46.80 2.50
3513 3918 1.079197 CCCGGTAACCGTGGTAACC 60.079 63.158 0.00 0.00 46.80 2.85
3514 3919 1.670590 CCGGTAACCGTGGTAACCA 59.329 57.895 0.00 0.00 46.80 3.67
3529 3934 5.250200 TGGTAACCACATTTATCAGTCACC 58.750 41.667 0.00 0.00 0.00 4.02
3530 3935 4.638865 GGTAACCACATTTATCAGTCACCC 59.361 45.833 0.00 0.00 0.00 4.61
3531 3936 4.657814 AACCACATTTATCAGTCACCCT 57.342 40.909 0.00 0.00 0.00 4.34
3532 3937 4.222124 ACCACATTTATCAGTCACCCTC 57.778 45.455 0.00 0.00 0.00 4.30
3533 3938 3.198068 CCACATTTATCAGTCACCCTCG 58.802 50.000 0.00 0.00 0.00 4.63
3534 3939 3.198068 CACATTTATCAGTCACCCTCGG 58.802 50.000 0.00 0.00 0.00 4.63
3535 3940 2.838202 ACATTTATCAGTCACCCTCGGT 59.162 45.455 0.00 0.00 35.62 4.69
3536 3941 4.028131 ACATTTATCAGTCACCCTCGGTA 58.972 43.478 0.00 0.00 32.11 4.02
3537 3942 4.468510 ACATTTATCAGTCACCCTCGGTAA 59.531 41.667 0.00 0.00 32.11 2.85
3538 3943 5.046159 ACATTTATCAGTCACCCTCGGTAAA 60.046 40.000 0.00 0.00 32.11 2.01
3539 3944 5.486735 TTTATCAGTCACCCTCGGTAAAA 57.513 39.130 0.00 0.00 32.11 1.52
3540 3945 5.687166 TTATCAGTCACCCTCGGTAAAAT 57.313 39.130 0.00 0.00 32.11 1.82
3541 3946 4.569719 ATCAGTCACCCTCGGTAAAATT 57.430 40.909 0.00 0.00 32.11 1.82
3542 3947 3.670625 TCAGTCACCCTCGGTAAAATTG 58.329 45.455 0.00 0.00 32.11 2.32
3543 3948 2.161609 CAGTCACCCTCGGTAAAATTGC 59.838 50.000 0.00 0.00 32.11 3.56
3544 3949 1.471287 GTCACCCTCGGTAAAATTGCC 59.529 52.381 0.00 0.00 32.11 4.52
3545 3950 1.353022 TCACCCTCGGTAAAATTGCCT 59.647 47.619 0.00 0.00 32.11 4.75
3546 3951 1.743394 CACCCTCGGTAAAATTGCCTC 59.257 52.381 0.00 0.00 32.11 4.70
3547 3952 1.353022 ACCCTCGGTAAAATTGCCTCA 59.647 47.619 0.00 0.00 32.11 3.86
3548 3953 2.025321 ACCCTCGGTAAAATTGCCTCAT 60.025 45.455 0.00 0.00 32.11 2.90
3549 3954 3.023832 CCCTCGGTAAAATTGCCTCATT 58.976 45.455 0.00 0.00 0.00 2.57
3550 3955 3.066760 CCCTCGGTAAAATTGCCTCATTC 59.933 47.826 0.00 0.00 0.00 2.67
3551 3956 3.242739 CCTCGGTAAAATTGCCTCATTCG 60.243 47.826 0.00 0.00 0.00 3.34
3552 3957 2.680841 TCGGTAAAATTGCCTCATTCGG 59.319 45.455 0.00 0.00 0.00 4.30
3553 3958 2.422127 CGGTAAAATTGCCTCATTCGGT 59.578 45.455 0.00 0.00 0.00 4.69
3554 3959 3.623960 CGGTAAAATTGCCTCATTCGGTA 59.376 43.478 0.00 0.00 0.00 4.02
3555 3960 4.095185 CGGTAAAATTGCCTCATTCGGTAA 59.905 41.667 0.00 0.00 33.14 2.85
3556 3961 5.337554 GGTAAAATTGCCTCATTCGGTAAC 58.662 41.667 0.00 0.00 31.36 2.50
3557 3962 4.450082 AAAATTGCCTCATTCGGTAACC 57.550 40.909 0.00 0.00 31.36 2.85
3558 3963 2.799126 ATTGCCTCATTCGGTAACCA 57.201 45.000 0.00 0.00 31.36 3.67
3559 3964 2.570415 TTGCCTCATTCGGTAACCAA 57.430 45.000 0.00 0.00 0.00 3.67
3560 3965 2.570415 TGCCTCATTCGGTAACCAAA 57.430 45.000 0.00 0.00 0.00 3.28
3561 3966 2.865079 TGCCTCATTCGGTAACCAAAA 58.135 42.857 0.00 0.00 0.00 2.44
3562 3967 2.817258 TGCCTCATTCGGTAACCAAAAG 59.183 45.455 0.00 0.00 0.00 2.27
3563 3968 2.415491 GCCTCATTCGGTAACCAAAAGC 60.415 50.000 0.00 0.00 0.00 3.51
3564 3969 3.081804 CCTCATTCGGTAACCAAAAGCT 58.918 45.455 0.00 0.00 0.00 3.74
3565 3970 3.506067 CCTCATTCGGTAACCAAAAGCTT 59.494 43.478 0.00 0.00 0.00 3.74
3566 3971 4.475944 CTCATTCGGTAACCAAAAGCTTG 58.524 43.478 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 4.755266 AGTTCGTGGGCTACTTGATTAT 57.245 40.909 0.00 0.00 0.00 1.28
75 76 9.939802 AAAATTTAGTCATCCTAACTAGTTCGT 57.060 29.630 12.39 0.00 35.36 3.85
111 112 5.278808 CGGAATACGGAATCCATCTAGACAA 60.279 44.000 1.85 0.00 39.42 3.18
153 154 5.015515 TGTTGCATCATTTACAAGATGGGA 58.984 37.500 0.00 0.00 41.43 4.37
185 186 7.730364 TGACAAACTTCTCCTTTATTCACTC 57.270 36.000 0.00 0.00 0.00 3.51
220 221 7.893124 AGCCATGATGACATTCTCTAAAAAT 57.107 32.000 0.00 0.00 34.15 1.82
222 223 6.405065 GCAAGCCATGATGACATTCTCTAAAA 60.405 38.462 0.00 0.00 34.15 1.52
228 229 3.014304 AGCAAGCCATGATGACATTCT 57.986 42.857 0.00 0.00 34.15 2.40
234 235 6.474140 AATCAATAAAGCAAGCCATGATGA 57.526 33.333 0.00 0.00 0.00 2.92
280 281 0.482446 TTCCTGGTTGATGCCTTGGT 59.518 50.000 0.00 0.00 0.00 3.67
305 306 4.411256 TGTAATTCGGTAGATGAACCCC 57.589 45.455 0.00 0.00 36.03 4.95
374 376 5.868257 TGCATTGTAATAGAGAAGCAAACG 58.132 37.500 0.00 0.00 0.00 3.60
375 377 8.519492 TTTTGCATTGTAATAGAGAAGCAAAC 57.481 30.769 8.53 0.00 46.39 2.93
399 738 9.699410 TCTGGTATGATAGGATTTGTTCATTTT 57.301 29.630 0.00 0.00 31.59 1.82
409 748 6.386927 TCCACTTTGTCTGGTATGATAGGATT 59.613 38.462 0.00 0.00 0.00 3.01
433 772 5.673337 TCGGCAATTTATGTAGAATGCTC 57.327 39.130 0.00 0.00 0.00 4.26
442 783 1.603802 CGGAGCATCGGCAATTTATGT 59.396 47.619 0.00 0.00 44.61 2.29
503 844 8.152898 TCATCCAAATAGAATCTGATTCGATGT 58.847 33.333 25.59 19.27 43.92 3.06
534 875 7.526041 TGATGTTAGCTAATGATATGGGGTTT 58.474 34.615 9.88 0.00 0.00 3.27
645 986 1.599542 GCAGGCATCGGAGACAAATAC 59.400 52.381 0.00 0.00 42.51 1.89
650 991 2.265739 GTGCAGGCATCGGAGACA 59.734 61.111 0.00 0.00 42.51 3.41
651 992 2.512515 GGTGCAGGCATCGGAGAC 60.513 66.667 0.00 0.00 42.51 3.36
656 997 2.898920 ATCCAAGGGTGCAGGCATCG 62.899 60.000 0.00 0.00 0.00 3.84
661 1002 1.225704 GAGGATCCAAGGGTGCAGG 59.774 63.158 15.82 0.00 0.00 4.85
663 1004 0.547471 TGAGAGGATCCAAGGGTGCA 60.547 55.000 15.82 0.00 33.66 4.57
670 1011 3.118482 GCTGATGAGTTGAGAGGATCCAA 60.118 47.826 15.82 0.00 33.66 3.53
760 1113 6.016693 TCCATCAACAGAAAACGATTTGCTAA 60.017 34.615 0.00 0.00 0.00 3.09
761 1114 5.471797 TCCATCAACAGAAAACGATTTGCTA 59.528 36.000 0.00 0.00 0.00 3.49
900 1255 1.957877 GGACCGACTTCAGATCCTAGG 59.042 57.143 0.82 0.82 0.00 3.02
901 1256 2.359531 GTGGACCGACTTCAGATCCTAG 59.640 54.545 0.00 0.00 0.00 3.02
902 1257 2.376109 GTGGACCGACTTCAGATCCTA 58.624 52.381 0.00 0.00 0.00 2.94
903 1258 1.187087 GTGGACCGACTTCAGATCCT 58.813 55.000 0.00 0.00 0.00 3.24
904 1259 0.175989 GGTGGACCGACTTCAGATCC 59.824 60.000 0.00 0.00 0.00 3.36
905 1260 3.742983 GGTGGACCGACTTCAGATC 57.257 57.895 0.00 0.00 0.00 2.75
929 1288 3.454587 TAGGTATTGCTGCGCCGGG 62.455 63.158 4.18 0.00 0.00 5.73
1027 1389 3.760035 GCTGAGGCGGTCGAGGAA 61.760 66.667 0.00 0.00 0.00 3.36
1174 1536 2.960129 CCTGTCGCGGCGAATACC 60.960 66.667 28.14 15.07 37.72 2.73
1401 1763 1.743252 CTTGAGGCGCTTCAGGGAC 60.743 63.158 21.83 0.00 36.06 4.46
1606 1968 0.178891 TTCAGGACCTTGAGGCTCCT 60.179 55.000 12.86 12.57 42.49 3.69
1752 2114 1.376683 GTTCATGCCGGTGTAGCCA 60.377 57.895 1.90 0.00 36.97 4.75
1760 2122 1.086696 AATCTCGTTGTTCATGCCGG 58.913 50.000 0.00 0.00 0.00 6.13
1845 2207 4.321974 GGAAGCGATTGGAAGGTCAATTTT 60.322 41.667 0.00 0.00 37.47 1.82
1857 2219 7.548196 TTAAGTATTTACAGGAAGCGATTGG 57.452 36.000 0.00 0.00 0.00 3.16
1954 2319 2.005960 GCATCAGGTCGACCGCTAGT 62.006 60.000 28.26 8.32 42.08 2.57
1960 2325 2.094659 CGTGTGCATCAGGTCGACC 61.095 63.158 27.67 27.67 0.00 4.79
1987 2352 6.204688 AGTTGATGTAATGTTCGTTGATGTGT 59.795 34.615 0.00 0.00 0.00 3.72
2015 2380 3.689347 ACACCTTGATCAGCTGCATAAA 58.311 40.909 9.47 2.53 0.00 1.40
2176 2544 9.313118 ACTGTTACAAAAATTTCAATCAGGAAC 57.687 29.630 0.00 0.00 0.00 3.62
2255 2623 1.033746 CCATGCAAGGAACGGATGCT 61.034 55.000 0.35 0.00 40.66 3.79
2315 2683 0.842030 TGTCCCTCTGCCATTCCTGT 60.842 55.000 0.00 0.00 0.00 4.00
2321 2689 2.599597 GCCATGTCCCTCTGCCAT 59.400 61.111 0.00 0.00 0.00 4.40
2507 2875 1.490490 ACCACCAGCTGACTCTTGAAA 59.510 47.619 17.39 0.00 0.00 2.69
2634 3003 8.352942 AGAAAACCACAATGAAGAATGTAACTC 58.647 33.333 0.00 0.00 0.00 3.01
2647 3016 6.422776 AGTCGCTATAAGAAAACCACAATG 57.577 37.500 0.00 0.00 0.00 2.82
2702 3071 4.566360 CCACATTTGACAACAAGAAACACC 59.434 41.667 0.00 0.00 37.32 4.16
2711 3080 2.223782 GCTTCAGCCACATTTGACAACA 60.224 45.455 0.00 0.00 34.31 3.33
2744 3117 9.261180 GGCAATCCTAAATTTTAATAAGAAGGC 57.739 33.333 0.00 0.00 0.00 4.35
2866 3240 3.145422 GAGCTAGTGAGAGGCGGCC 62.145 68.421 12.11 12.11 0.00 6.13
2908 3282 5.305128 AGTCAATTTTCCAGCAATTTCCTCA 59.695 36.000 0.00 0.00 0.00 3.86
2922 3296 7.467557 TTTGCTTGAATCACAGTCAATTTTC 57.532 32.000 0.00 0.00 34.59 2.29
3006 3389 5.407407 TCAGAAAGTTCTACTCCATGTCC 57.593 43.478 0.00 0.00 35.34 4.02
3013 3396 8.993121 TGACAAATGATTCAGAAAGTTCTACTC 58.007 33.333 0.00 0.00 35.34 2.59
3055 3438 1.762708 ATGAATAAAGCACCACCGGG 58.237 50.000 6.32 0.00 41.29 5.73
3080 3463 6.711277 AGTTCATAGCAAATCAGTACTTGGA 58.289 36.000 0.00 0.00 0.00 3.53
3106 3489 0.028770 TGTACACGCTTGCAAGTTGC 59.971 50.000 26.55 21.17 45.29 4.17
3107 3490 2.466870 TTGTACACGCTTGCAAGTTG 57.533 45.000 26.55 23.82 0.00 3.16
3155 3560 4.024133 TGAAACATGTCACTGTGAAATCCG 60.024 41.667 12.81 4.51 0.00 4.18
3159 3564 4.269183 ACCTGAAACATGTCACTGTGAAA 58.731 39.130 12.81 7.74 0.00 2.69
3164 3569 2.483876 ACGACCTGAAACATGTCACTG 58.516 47.619 0.00 0.64 30.40 3.66
3179 3584 1.601166 ACCAAAACCTTGCTACGACC 58.399 50.000 0.00 0.00 0.00 4.79
3180 3585 3.058708 GGTAACCAAAACCTTGCTACGAC 60.059 47.826 0.00 0.00 33.97 4.34
3181 3586 3.140623 GGTAACCAAAACCTTGCTACGA 58.859 45.455 0.00 0.00 33.97 3.43
3182 3587 2.879646 TGGTAACCAAAACCTTGCTACG 59.120 45.455 0.00 0.00 37.91 3.51
3183 3588 3.887110 ACTGGTAACCAAAACCTTGCTAC 59.113 43.478 0.00 0.00 37.91 3.58
3184 3589 4.139038 GACTGGTAACCAAAACCTTGCTA 58.861 43.478 0.00 0.00 37.91 3.49
3185 3590 2.956333 GACTGGTAACCAAAACCTTGCT 59.044 45.455 0.00 0.00 37.91 3.91
3186 3591 2.287368 CGACTGGTAACCAAAACCTTGC 60.287 50.000 0.00 0.00 37.91 4.01
3187 3592 3.207778 TCGACTGGTAACCAAAACCTTG 58.792 45.455 0.00 0.00 37.91 3.61
3188 3593 3.564053 TCGACTGGTAACCAAAACCTT 57.436 42.857 0.00 0.00 37.91 3.50
3189 3594 3.564053 TTCGACTGGTAACCAAAACCT 57.436 42.857 0.00 0.00 37.91 3.50
3190 3595 4.841443 ATTTCGACTGGTAACCAAAACC 57.159 40.909 0.00 0.00 37.53 3.27
3191 3596 6.267070 TGAAATTTCGACTGGTAACCAAAAC 58.733 36.000 13.34 0.00 30.80 2.43
3192 3597 6.452494 TGAAATTTCGACTGGTAACCAAAA 57.548 33.333 13.34 0.00 30.80 2.44
3193 3598 6.319152 TCTTGAAATTTCGACTGGTAACCAAA 59.681 34.615 13.34 0.00 30.80 3.28
3194 3599 5.823570 TCTTGAAATTTCGACTGGTAACCAA 59.176 36.000 13.34 0.00 30.80 3.67
3195 3600 5.369833 TCTTGAAATTTCGACTGGTAACCA 58.630 37.500 13.34 0.00 0.00 3.67
3196 3601 5.934935 TCTTGAAATTTCGACTGGTAACC 57.065 39.130 13.34 0.00 0.00 2.85
3197 3602 7.537649 GGAAATCTTGAAATTTCGACTGGTAAC 59.462 37.037 13.34 1.06 43.52 2.50
3198 3603 7.308951 GGGAAATCTTGAAATTTCGACTGGTAA 60.309 37.037 13.34 0.00 43.52 2.85
3199 3604 6.150474 GGGAAATCTTGAAATTTCGACTGGTA 59.850 38.462 13.34 0.00 43.52 3.25
3200 3605 5.048013 GGGAAATCTTGAAATTTCGACTGGT 60.048 40.000 13.34 0.00 43.52 4.00
3201 3606 5.048083 TGGGAAATCTTGAAATTTCGACTGG 60.048 40.000 13.34 0.77 43.52 4.00
3202 3607 6.012658 TGGGAAATCTTGAAATTTCGACTG 57.987 37.500 13.34 1.46 43.52 3.51
3203 3608 6.350445 CCATGGGAAATCTTGAAATTTCGACT 60.350 38.462 13.34 0.00 43.52 4.18
3204 3609 5.807011 CCATGGGAAATCTTGAAATTTCGAC 59.193 40.000 13.34 0.00 43.52 4.20
3205 3610 5.480073 ACCATGGGAAATCTTGAAATTTCGA 59.520 36.000 18.09 10.62 43.52 3.71
3206 3611 5.723295 ACCATGGGAAATCTTGAAATTTCG 58.277 37.500 18.09 0.46 43.52 3.46
3207 3612 7.549134 GGTAACCATGGGAAATCTTGAAATTTC 59.451 37.037 18.09 11.41 42.41 2.17
3208 3613 7.394016 GGTAACCATGGGAAATCTTGAAATTT 58.606 34.615 18.09 0.00 0.00 1.82
3209 3614 6.350949 CGGTAACCATGGGAAATCTTGAAATT 60.351 38.462 18.09 0.00 0.00 1.82
3210 3615 5.127031 CGGTAACCATGGGAAATCTTGAAAT 59.873 40.000 18.09 0.00 0.00 2.17
3211 3616 4.461081 CGGTAACCATGGGAAATCTTGAAA 59.539 41.667 18.09 0.00 0.00 2.69
3212 3617 4.013728 CGGTAACCATGGGAAATCTTGAA 58.986 43.478 18.09 0.00 0.00 2.69
3213 3618 3.009695 ACGGTAACCATGGGAAATCTTGA 59.990 43.478 18.09 0.00 0.00 3.02
3214 3619 3.128589 CACGGTAACCATGGGAAATCTTG 59.871 47.826 18.09 1.23 0.00 3.02
3215 3620 3.245122 ACACGGTAACCATGGGAAATCTT 60.245 43.478 18.09 2.18 0.00 2.40
3216 3621 2.307686 ACACGGTAACCATGGGAAATCT 59.692 45.455 18.09 0.00 0.00 2.40
3217 3622 2.718563 ACACGGTAACCATGGGAAATC 58.281 47.619 18.09 0.00 0.00 2.17
3218 3623 2.891191 ACACGGTAACCATGGGAAAT 57.109 45.000 18.09 1.59 0.00 2.17
3219 3624 4.304048 AATACACGGTAACCATGGGAAA 57.696 40.909 18.09 0.00 0.00 3.13
3220 3625 4.263435 GAAATACACGGTAACCATGGGAA 58.737 43.478 18.09 0.00 0.00 3.97
3221 3626 3.370739 GGAAATACACGGTAACCATGGGA 60.371 47.826 18.09 0.00 0.00 4.37
3222 3627 2.946990 GGAAATACACGGTAACCATGGG 59.053 50.000 18.09 0.00 0.00 4.00
3223 3628 2.610374 CGGAAATACACGGTAACCATGG 59.390 50.000 11.19 11.19 0.00 3.66
3224 3629 3.062909 CACGGAAATACACGGTAACCATG 59.937 47.826 0.00 0.00 0.00 3.66
3225 3630 3.264104 CACGGAAATACACGGTAACCAT 58.736 45.455 0.00 0.00 0.00 3.55
3226 3631 2.686235 CACGGAAATACACGGTAACCA 58.314 47.619 0.00 0.00 0.00 3.67
3227 3632 1.394572 GCACGGAAATACACGGTAACC 59.605 52.381 0.00 0.00 0.00 2.85
3228 3633 1.394572 GGCACGGAAATACACGGTAAC 59.605 52.381 0.00 0.00 0.00 2.50
3229 3634 1.675415 GGGCACGGAAATACACGGTAA 60.675 52.381 0.00 0.00 0.00 2.85
3230 3635 0.108233 GGGCACGGAAATACACGGTA 60.108 55.000 0.00 0.00 0.00 4.02
3231 3636 1.376295 GGGCACGGAAATACACGGT 60.376 57.895 0.00 0.00 0.00 4.83
3232 3637 2.110352 GGGGCACGGAAATACACGG 61.110 63.158 0.00 0.00 0.00 4.94
3233 3638 1.078708 AGGGGCACGGAAATACACG 60.079 57.895 0.00 0.00 0.00 4.49
3234 3639 1.087771 CGAGGGGCACGGAAATACAC 61.088 60.000 0.00 0.00 0.00 2.90
3235 3640 1.219664 CGAGGGGCACGGAAATACA 59.780 57.895 0.00 0.00 0.00 2.29
3236 3641 4.120085 CGAGGGGCACGGAAATAC 57.880 61.111 0.00 0.00 0.00 1.89
3243 3648 1.523032 GGATTTACCGAGGGGCACG 60.523 63.158 0.00 0.00 36.48 5.34
3244 3649 0.746923 GTGGATTTACCGAGGGGCAC 60.747 60.000 0.00 0.00 42.61 5.01
3245 3650 1.202099 TGTGGATTTACCGAGGGGCA 61.202 55.000 0.00 0.00 42.61 5.36
3246 3651 0.182775 ATGTGGATTTACCGAGGGGC 59.817 55.000 0.00 0.00 42.61 5.80
3247 3652 2.224450 GGTATGTGGATTTACCGAGGGG 60.224 54.545 0.00 0.00 42.61 4.79
3248 3653 3.121738 GGTATGTGGATTTACCGAGGG 57.878 52.381 0.00 0.00 42.61 4.30
3253 3658 3.188159 TGCTCGGTATGTGGATTTACC 57.812 47.619 0.00 0.00 35.52 2.85
3254 3659 5.554822 TTTTGCTCGGTATGTGGATTTAC 57.445 39.130 0.00 0.00 0.00 2.01
3289 3694 9.414834 CGAGCGTTAAAATTCAAAATTTTCAAA 57.585 25.926 12.31 0.00 33.73 2.69
3290 3695 8.808529 TCGAGCGTTAAAATTCAAAATTTTCAA 58.191 25.926 12.31 0.00 33.73 2.69
3291 3696 8.341477 TCGAGCGTTAAAATTCAAAATTTTCA 57.659 26.923 12.31 1.71 33.73 2.69
3292 3697 9.791838 AATCGAGCGTTAAAATTCAAAATTTTC 57.208 25.926 12.31 1.63 33.73 2.29
3294 3699 9.579610 CAAATCGAGCGTTAAAATTCAAAATTT 57.420 25.926 0.00 0.00 0.00 1.82
3295 3700 8.760569 ACAAATCGAGCGTTAAAATTCAAAATT 58.239 25.926 0.00 0.00 0.00 1.82
3296 3701 8.293114 ACAAATCGAGCGTTAAAATTCAAAAT 57.707 26.923 0.00 0.00 0.00 1.82
3297 3702 7.687005 ACAAATCGAGCGTTAAAATTCAAAA 57.313 28.000 0.00 0.00 0.00 2.44
3298 3703 8.071368 ACTACAAATCGAGCGTTAAAATTCAAA 58.929 29.630 0.00 0.00 0.00 2.69
3299 3704 7.577979 ACTACAAATCGAGCGTTAAAATTCAA 58.422 30.769 0.00 0.00 0.00 2.69
3300 3705 7.124347 ACTACAAATCGAGCGTTAAAATTCA 57.876 32.000 0.00 0.00 0.00 2.57
3301 3706 9.532697 TTTACTACAAATCGAGCGTTAAAATTC 57.467 29.630 0.00 0.00 0.00 2.17
3302 3707 9.537848 CTTTACTACAAATCGAGCGTTAAAATT 57.462 29.630 0.00 0.00 0.00 1.82
3303 3708 8.715088 ACTTTACTACAAATCGAGCGTTAAAAT 58.285 29.630 0.00 0.00 0.00 1.82
3304 3709 8.005466 CACTTTACTACAAATCGAGCGTTAAAA 58.995 33.333 0.00 0.00 0.00 1.52
3305 3710 7.503991 CACTTTACTACAAATCGAGCGTTAAA 58.496 34.615 0.00 0.00 0.00 1.52
3306 3711 6.400303 GCACTTTACTACAAATCGAGCGTTAA 60.400 38.462 0.00 0.00 0.00 2.01
3307 3712 5.061311 GCACTTTACTACAAATCGAGCGTTA 59.939 40.000 0.00 0.00 0.00 3.18
3308 3713 4.143179 GCACTTTACTACAAATCGAGCGTT 60.143 41.667 0.00 0.00 0.00 4.84
3309 3714 3.367025 GCACTTTACTACAAATCGAGCGT 59.633 43.478 0.00 0.00 0.00 5.07
3310 3715 3.241995 GGCACTTTACTACAAATCGAGCG 60.242 47.826 0.00 0.00 0.00 5.03
3311 3716 3.933332 AGGCACTTTACTACAAATCGAGC 59.067 43.478 0.00 0.00 27.25 5.03
3312 3717 5.749109 CCTAGGCACTTTACTACAAATCGAG 59.251 44.000 0.00 0.00 41.75 4.04
3313 3718 5.419788 TCCTAGGCACTTTACTACAAATCGA 59.580 40.000 2.96 0.00 41.75 3.59
3314 3719 5.657474 TCCTAGGCACTTTACTACAAATCG 58.343 41.667 2.96 0.00 41.75 3.34
3315 3720 7.501844 AGATCCTAGGCACTTTACTACAAATC 58.498 38.462 2.96 0.00 41.75 2.17
3316 3721 7.439108 AGATCCTAGGCACTTTACTACAAAT 57.561 36.000 2.96 0.00 41.75 2.32
3317 3722 6.869206 AGATCCTAGGCACTTTACTACAAA 57.131 37.500 2.96 0.00 41.75 2.83
3318 3723 7.966339 TTAGATCCTAGGCACTTTACTACAA 57.034 36.000 2.96 0.00 41.75 2.41
3319 3724 8.548880 AATTAGATCCTAGGCACTTTACTACA 57.451 34.615 2.96 0.00 41.75 2.74
3323 3728 8.722394 GCATTAATTAGATCCTAGGCACTTTAC 58.278 37.037 2.96 0.00 41.75 2.01
3324 3729 8.436778 TGCATTAATTAGATCCTAGGCACTTTA 58.563 33.333 2.96 0.29 41.75 1.85
3325 3730 7.290061 TGCATTAATTAGATCCTAGGCACTTT 58.710 34.615 2.96 1.19 41.75 2.66
3326 3731 6.841601 TGCATTAATTAGATCCTAGGCACTT 58.158 36.000 2.96 0.00 41.75 3.16
3327 3732 6.439636 TGCATTAATTAGATCCTAGGCACT 57.560 37.500 2.96 8.28 46.37 4.40
3328 3733 6.150140 CCTTGCATTAATTAGATCCTAGGCAC 59.850 42.308 2.96 0.00 0.00 5.01
3329 3734 6.044287 TCCTTGCATTAATTAGATCCTAGGCA 59.956 38.462 2.96 0.00 0.00 4.75
3330 3735 6.476378 TCCTTGCATTAATTAGATCCTAGGC 58.524 40.000 2.96 0.00 0.00 3.93
3331 3736 7.911651 TCTCCTTGCATTAATTAGATCCTAGG 58.088 38.462 0.82 0.82 0.00 3.02
3332 3737 8.592809 ACTCTCCTTGCATTAATTAGATCCTAG 58.407 37.037 0.00 0.00 0.00 3.02
3333 3738 8.497910 ACTCTCCTTGCATTAATTAGATCCTA 57.502 34.615 0.00 0.00 0.00 2.94
3334 3739 7.385894 ACTCTCCTTGCATTAATTAGATCCT 57.614 36.000 0.00 0.00 0.00 3.24
3335 3740 7.716998 TCAACTCTCCTTGCATTAATTAGATCC 59.283 37.037 0.00 0.00 0.00 3.36
3336 3741 8.668510 TCAACTCTCCTTGCATTAATTAGATC 57.331 34.615 0.00 0.00 0.00 2.75
3337 3742 9.638176 AATCAACTCTCCTTGCATTAATTAGAT 57.362 29.630 0.00 0.00 0.00 1.98
3338 3743 9.113838 GAATCAACTCTCCTTGCATTAATTAGA 57.886 33.333 0.00 0.00 0.00 2.10
3339 3744 9.118300 AGAATCAACTCTCCTTGCATTAATTAG 57.882 33.333 0.00 0.00 0.00 1.73
3340 3745 8.896744 CAGAATCAACTCTCCTTGCATTAATTA 58.103 33.333 0.00 0.00 0.00 1.40
3341 3746 7.613022 TCAGAATCAACTCTCCTTGCATTAATT 59.387 33.333 0.00 0.00 0.00 1.40
3342 3747 7.066766 GTCAGAATCAACTCTCCTTGCATTAAT 59.933 37.037 0.00 0.00 0.00 1.40
3343 3748 6.372659 GTCAGAATCAACTCTCCTTGCATTAA 59.627 38.462 0.00 0.00 0.00 1.40
3344 3749 5.877012 GTCAGAATCAACTCTCCTTGCATTA 59.123 40.000 0.00 0.00 0.00 1.90
3345 3750 4.699257 GTCAGAATCAACTCTCCTTGCATT 59.301 41.667 0.00 0.00 0.00 3.56
3346 3751 4.260170 GTCAGAATCAACTCTCCTTGCAT 58.740 43.478 0.00 0.00 0.00 3.96
3347 3752 3.668447 GTCAGAATCAACTCTCCTTGCA 58.332 45.455 0.00 0.00 0.00 4.08
3348 3753 2.670414 CGTCAGAATCAACTCTCCTTGC 59.330 50.000 0.00 0.00 0.00 4.01
3349 3754 3.677121 CACGTCAGAATCAACTCTCCTTG 59.323 47.826 0.00 0.00 0.00 3.61
3350 3755 3.322254 ACACGTCAGAATCAACTCTCCTT 59.678 43.478 0.00 0.00 0.00 3.36
3351 3756 2.894126 ACACGTCAGAATCAACTCTCCT 59.106 45.455 0.00 0.00 0.00 3.69
3352 3757 3.305398 ACACGTCAGAATCAACTCTCC 57.695 47.619 0.00 0.00 0.00 3.71
3353 3758 4.299155 TGAACACGTCAGAATCAACTCTC 58.701 43.478 0.00 0.00 0.00 3.20
3354 3759 4.322080 TGAACACGTCAGAATCAACTCT 57.678 40.909 0.00 0.00 0.00 3.24
3355 3760 5.220303 GCTATGAACACGTCAGAATCAACTC 60.220 44.000 0.00 0.00 40.43 3.01
3356 3761 4.627467 GCTATGAACACGTCAGAATCAACT 59.373 41.667 0.00 0.00 40.43 3.16
3357 3762 4.388773 TGCTATGAACACGTCAGAATCAAC 59.611 41.667 0.00 0.00 40.43 3.18
3358 3763 4.565022 TGCTATGAACACGTCAGAATCAA 58.435 39.130 0.00 0.00 40.43 2.57
3359 3764 4.186856 TGCTATGAACACGTCAGAATCA 57.813 40.909 0.00 0.00 40.43 2.57
3360 3765 4.201724 GGTTGCTATGAACACGTCAGAATC 60.202 45.833 0.00 0.00 40.43 2.52
3361 3766 3.684788 GGTTGCTATGAACACGTCAGAAT 59.315 43.478 0.00 0.00 40.43 2.40
3362 3767 3.064207 GGTTGCTATGAACACGTCAGAA 58.936 45.455 0.00 0.00 40.43 3.02
3363 3768 2.299013 AGGTTGCTATGAACACGTCAGA 59.701 45.455 0.00 0.00 40.43 3.27
3364 3769 2.688507 AGGTTGCTATGAACACGTCAG 58.311 47.619 0.00 0.00 40.43 3.51
3365 3770 2.831685 AGGTTGCTATGAACACGTCA 57.168 45.000 0.00 0.00 41.67 4.35
3366 3771 3.846360 ACTAGGTTGCTATGAACACGTC 58.154 45.455 0.00 0.00 0.00 4.34
3367 3772 3.955650 ACTAGGTTGCTATGAACACGT 57.044 42.857 0.00 0.00 0.00 4.49
3368 3773 3.617263 GGAACTAGGTTGCTATGAACACG 59.383 47.826 0.00 0.00 31.28 4.49
3369 3774 4.631813 CAGGAACTAGGTTGCTATGAACAC 59.368 45.833 4.28 0.00 42.02 3.32
3370 3775 4.286032 ACAGGAACTAGGTTGCTATGAACA 59.714 41.667 4.28 0.00 42.02 3.18
3371 3776 4.833390 ACAGGAACTAGGTTGCTATGAAC 58.167 43.478 4.28 0.00 42.02 3.18
3372 3777 5.499004 AACAGGAACTAGGTTGCTATGAA 57.501 39.130 4.28 0.00 42.02 2.57
3373 3778 5.499004 AAACAGGAACTAGGTTGCTATGA 57.501 39.130 4.28 0.00 42.02 2.15
3374 3779 5.705441 TCAAAACAGGAACTAGGTTGCTATG 59.295 40.000 4.28 3.18 42.02 2.23
3375 3780 5.705905 GTCAAAACAGGAACTAGGTTGCTAT 59.294 40.000 4.28 0.00 42.02 2.97
3376 3781 5.061179 GTCAAAACAGGAACTAGGTTGCTA 58.939 41.667 4.28 0.00 42.02 3.49
3377 3782 3.883489 GTCAAAACAGGAACTAGGTTGCT 59.117 43.478 0.00 0.00 44.62 3.91
3378 3783 3.630312 TGTCAAAACAGGAACTAGGTTGC 59.370 43.478 0.00 0.00 36.02 4.17
3391 3796 4.524714 TCAAACCAAAGACCTGTCAAAACA 59.475 37.500 0.00 0.00 0.00 2.83
3392 3797 5.066968 TCAAACCAAAGACCTGTCAAAAC 57.933 39.130 0.00 0.00 0.00 2.43
3393 3798 5.730296 TTCAAACCAAAGACCTGTCAAAA 57.270 34.783 0.00 0.00 0.00 2.44
3394 3799 5.186797 ACATTCAAACCAAAGACCTGTCAAA 59.813 36.000 0.00 0.00 0.00 2.69
3395 3800 4.709397 ACATTCAAACCAAAGACCTGTCAA 59.291 37.500 0.00 0.00 0.00 3.18
3396 3801 4.277476 ACATTCAAACCAAAGACCTGTCA 58.723 39.130 0.00 0.00 0.00 3.58
3397 3802 4.918810 ACATTCAAACCAAAGACCTGTC 57.081 40.909 0.00 0.00 0.00 3.51
3398 3803 4.202010 CGAACATTCAAACCAAAGACCTGT 60.202 41.667 0.00 0.00 0.00 4.00
3399 3804 4.202010 ACGAACATTCAAACCAAAGACCTG 60.202 41.667 0.00 0.00 0.00 4.00
3400 3805 3.951680 ACGAACATTCAAACCAAAGACCT 59.048 39.130 0.00 0.00 0.00 3.85
3401 3806 4.301637 ACGAACATTCAAACCAAAGACC 57.698 40.909 0.00 0.00 0.00 3.85
3402 3807 5.336744 TGAACGAACATTCAAACCAAAGAC 58.663 37.500 0.00 0.00 35.65 3.01
3403 3808 5.568685 TGAACGAACATTCAAACCAAAGA 57.431 34.783 0.00 0.00 35.65 2.52
3404 3809 6.826893 AATGAACGAACATTCAAACCAAAG 57.173 33.333 0.00 0.00 41.78 2.77
3454 3859 8.823818 ACCGAGAATATTTCGAACGAATTTTAT 58.176 29.630 16.51 4.20 40.36 1.40
3455 3860 8.188531 ACCGAGAATATTTCGAACGAATTTTA 57.811 30.769 16.51 4.41 40.36 1.52
3456 3861 7.068692 ACCGAGAATATTTCGAACGAATTTT 57.931 32.000 16.51 5.19 40.36 1.82
3457 3862 6.657836 ACCGAGAATATTTCGAACGAATTT 57.342 33.333 16.51 5.50 40.36 1.82
3458 3863 7.941795 ATACCGAGAATATTTCGAACGAATT 57.058 32.000 16.51 9.48 40.36 2.17
3459 3864 7.941795 AATACCGAGAATATTTCGAACGAAT 57.058 32.000 16.51 0.00 40.36 3.34
3460 3865 7.703621 AGAAATACCGAGAATATTTCGAACGAA 59.296 33.333 16.51 5.53 46.64 3.85
3461 3866 7.198390 AGAAATACCGAGAATATTTCGAACGA 58.802 34.615 16.51 0.00 46.64 3.85
3462 3867 7.390918 AGAAATACCGAGAATATTTCGAACG 57.609 36.000 16.51 0.00 46.64 3.95
3463 3868 7.358187 CCGAGAAATACCGAGAATATTTCGAAC 60.358 40.741 16.51 0.00 46.64 3.95
3464 3869 6.639686 CCGAGAAATACCGAGAATATTTCGAA 59.360 38.462 16.51 0.00 46.64 3.71
3465 3870 6.147581 CCGAGAAATACCGAGAATATTTCGA 58.852 40.000 16.51 0.00 46.64 3.71
3466 3871 5.919141 ACCGAGAAATACCGAGAATATTTCG 59.081 40.000 10.33 10.96 46.64 3.46
3467 3872 8.983307 ATACCGAGAAATACCGAGAATATTTC 57.017 34.615 8.71 8.71 44.27 2.17
3468 3873 9.774413 AAATACCGAGAAATACCGAGAATATTT 57.226 29.630 0.00 0.00 35.43 1.40
3469 3874 9.420551 GAAATACCGAGAAATACCGAGAATATT 57.579 33.333 0.00 0.00 0.00 1.28
3470 3875 8.033626 GGAAATACCGAGAAATACCGAGAATAT 58.966 37.037 0.00 0.00 0.00 1.28
3471 3876 7.373493 GGAAATACCGAGAAATACCGAGAATA 58.627 38.462 0.00 0.00 0.00 1.75
3472 3877 6.221659 GGAAATACCGAGAAATACCGAGAAT 58.778 40.000 0.00 0.00 0.00 2.40
3473 3878 5.452356 GGGAAATACCGAGAAATACCGAGAA 60.452 44.000 0.00 0.00 40.11 2.87
3474 3879 4.038402 GGGAAATACCGAGAAATACCGAGA 59.962 45.833 0.00 0.00 40.11 4.04
3475 3880 4.304939 GGGAAATACCGAGAAATACCGAG 58.695 47.826 0.00 0.00 40.11 4.63
3476 3881 4.326504 GGGAAATACCGAGAAATACCGA 57.673 45.455 0.00 0.00 40.11 4.69
3506 3911 5.250200 GGTGACTGATAAATGTGGTTACCA 58.750 41.667 0.00 0.00 36.82 3.25
3507 3912 4.638865 GGGTGACTGATAAATGTGGTTACC 59.361 45.833 0.00 0.00 36.33 2.85
3508 3913 5.497474 AGGGTGACTGATAAATGTGGTTAC 58.503 41.667 0.00 0.00 0.00 2.50
3509 3914 5.625886 CGAGGGTGACTGATAAATGTGGTTA 60.626 44.000 0.00 0.00 0.00 2.85
3510 3915 4.589908 GAGGGTGACTGATAAATGTGGTT 58.410 43.478 0.00 0.00 0.00 3.67
3511 3916 3.369471 CGAGGGTGACTGATAAATGTGGT 60.369 47.826 0.00 0.00 0.00 4.16
3512 3917 3.198068 CGAGGGTGACTGATAAATGTGG 58.802 50.000 0.00 0.00 0.00 4.17
3513 3918 3.198068 CCGAGGGTGACTGATAAATGTG 58.802 50.000 0.00 0.00 0.00 3.21
3514 3919 2.838202 ACCGAGGGTGACTGATAAATGT 59.162 45.455 0.00 0.00 32.98 2.71
3515 3920 3.543680 ACCGAGGGTGACTGATAAATG 57.456 47.619 0.00 0.00 32.98 2.32
3516 3921 5.687166 TTTACCGAGGGTGACTGATAAAT 57.313 39.130 0.00 0.00 36.19 1.40
3517 3922 5.486735 TTTTACCGAGGGTGACTGATAAA 57.513 39.130 0.00 0.00 36.19 1.40
3518 3923 5.687166 ATTTTACCGAGGGTGACTGATAA 57.313 39.130 0.00 0.00 36.19 1.75
3519 3924 5.424757 CAATTTTACCGAGGGTGACTGATA 58.575 41.667 0.00 0.00 36.19 2.15
3520 3925 4.261801 CAATTTTACCGAGGGTGACTGAT 58.738 43.478 0.00 0.00 36.19 2.90
3521 3926 3.670625 CAATTTTACCGAGGGTGACTGA 58.329 45.455 0.00 0.00 36.19 3.41
3522 3927 2.161609 GCAATTTTACCGAGGGTGACTG 59.838 50.000 0.00 0.00 36.19 3.51
3523 3928 2.433436 GCAATTTTACCGAGGGTGACT 58.567 47.619 0.00 0.00 36.19 3.41
3524 3929 1.471287 GGCAATTTTACCGAGGGTGAC 59.529 52.381 0.00 0.00 36.19 3.67
3525 3930 1.353022 AGGCAATTTTACCGAGGGTGA 59.647 47.619 0.00 0.00 36.19 4.02
3526 3931 1.743394 GAGGCAATTTTACCGAGGGTG 59.257 52.381 0.00 0.00 36.19 4.61
3527 3932 1.353022 TGAGGCAATTTTACCGAGGGT 59.647 47.619 0.00 0.00 40.16 4.34
3528 3933 2.122783 TGAGGCAATTTTACCGAGGG 57.877 50.000 0.00 0.00 0.00 4.30
3529 3934 3.242739 CGAATGAGGCAATTTTACCGAGG 60.243 47.826 0.00 0.00 0.00 4.63
3530 3935 3.242739 CCGAATGAGGCAATTTTACCGAG 60.243 47.826 0.00 0.00 0.00 4.63
3531 3936 2.680841 CCGAATGAGGCAATTTTACCGA 59.319 45.455 0.00 0.00 0.00 4.69
3532 3937 2.422127 ACCGAATGAGGCAATTTTACCG 59.578 45.455 0.00 0.00 33.69 4.02
3533 3938 5.337554 GTTACCGAATGAGGCAATTTTACC 58.662 41.667 0.00 0.00 33.69 2.85
3534 3939 5.106078 TGGTTACCGAATGAGGCAATTTTAC 60.106 40.000 0.00 0.00 33.69 2.01
3535 3940 5.010933 TGGTTACCGAATGAGGCAATTTTA 58.989 37.500 0.00 0.00 33.69 1.52
3536 3941 3.829601 TGGTTACCGAATGAGGCAATTTT 59.170 39.130 0.00 0.00 33.69 1.82
3537 3942 3.426615 TGGTTACCGAATGAGGCAATTT 58.573 40.909 0.00 0.00 33.69 1.82
3538 3943 3.080300 TGGTTACCGAATGAGGCAATT 57.920 42.857 0.00 0.00 33.69 2.32
3539 3944 2.799126 TGGTTACCGAATGAGGCAAT 57.201 45.000 0.00 0.00 33.69 3.56
3540 3945 2.570415 TTGGTTACCGAATGAGGCAA 57.430 45.000 0.00 0.00 33.69 4.52
3541 3946 2.570415 TTTGGTTACCGAATGAGGCA 57.430 45.000 0.00 0.00 33.69 4.75
3542 3947 2.415491 GCTTTTGGTTACCGAATGAGGC 60.415 50.000 18.12 10.82 33.69 4.70
3543 3948 3.081804 AGCTTTTGGTTACCGAATGAGG 58.918 45.455 18.12 5.87 37.30 3.86
3544 3949 4.475944 CAAGCTTTTGGTTACCGAATGAG 58.524 43.478 18.12 9.42 38.17 2.90
3545 3950 3.254657 CCAAGCTTTTGGTTACCGAATGA 59.745 43.478 18.12 0.00 38.17 2.57
3546 3951 3.574614 CCAAGCTTTTGGTTACCGAATG 58.425 45.455 4.72 8.73 38.17 2.67
3547 3952 2.560981 CCCAAGCTTTTGGTTACCGAAT 59.439 45.455 4.72 0.00 40.46 3.34
3548 3953 1.957877 CCCAAGCTTTTGGTTACCGAA 59.042 47.619 0.00 0.00 40.46 4.30
3549 3954 1.133730 ACCCAAGCTTTTGGTTACCGA 60.134 47.619 10.95 0.00 40.46 4.69
3550 3955 1.268625 GACCCAAGCTTTTGGTTACCG 59.731 52.381 16.55 0.00 40.46 4.02
3551 3956 1.268625 CGACCCAAGCTTTTGGTTACC 59.731 52.381 16.55 0.00 40.46 2.85
3552 3957 1.951602 ACGACCCAAGCTTTTGGTTAC 59.048 47.619 16.55 6.30 40.46 2.50
3553 3958 2.351706 ACGACCCAAGCTTTTGGTTA 57.648 45.000 16.55 0.00 40.46 2.85
3554 3959 2.227194 CTACGACCCAAGCTTTTGGTT 58.773 47.619 16.55 6.61 40.46 3.67
3555 3960 1.142262 ACTACGACCCAAGCTTTTGGT 59.858 47.619 15.64 15.64 40.46 3.67
3556 3961 1.535462 CACTACGACCCAAGCTTTTGG 59.465 52.381 9.74 9.74 41.72 3.28
3557 3962 2.489971 TCACTACGACCCAAGCTTTTG 58.510 47.619 0.00 0.00 0.00 2.44
3558 3963 2.922740 TCACTACGACCCAAGCTTTT 57.077 45.000 0.00 0.00 0.00 2.27
3559 3964 3.679083 GCTATCACTACGACCCAAGCTTT 60.679 47.826 0.00 0.00 0.00 3.51
3560 3965 2.159085 GCTATCACTACGACCCAAGCTT 60.159 50.000 0.00 0.00 0.00 3.74
3561 3966 1.409427 GCTATCACTACGACCCAAGCT 59.591 52.381 0.00 0.00 0.00 3.74
3562 3967 1.136305 TGCTATCACTACGACCCAAGC 59.864 52.381 0.00 0.00 0.00 4.01
3563 3968 2.427453 ACTGCTATCACTACGACCCAAG 59.573 50.000 0.00 0.00 0.00 3.61
3564 3969 2.453521 ACTGCTATCACTACGACCCAA 58.546 47.619 0.00 0.00 0.00 4.12
3565 3970 2.139323 ACTGCTATCACTACGACCCA 57.861 50.000 0.00 0.00 0.00 4.51
3566 3971 2.481449 CCAACTGCTATCACTACGACCC 60.481 54.545 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.