>input_sequence_47390
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------AT
GGCG---GCCGCCGTCGGGGACGACCTCTTCCTCGACCGCCTCAGCGATCTCCCGGACATCATCCTGGTGACCATCCTCT
CCCGCCTCGACATGGACGAAGCGGCGAGGTGTTCAATCCTCAGCTCTCGCTGGCGCCGCCTCTTCCCATCCACCCTCCTC
GATTTCAAGGCCGGCGGTATTCGCCGCGACAGGGCCGTCGAGGCCGTCACCTCCATCCTCGCCGCCCACCCCACCGAGCC
CGTGCGCTCATTCAGCACGTACAGGCTCTCCTTCCGCCGCCAGGACGAGGACGCCGTTGACGGCTGGCTCCGGGATCTGG
CCAACCGCGGCATCGAAAAACTCGTCCTCTACTTCAACGAGAAGCGCCAGCAGAAGGTCCCGGAATCCCTCTTCGCCTGC
GCGTCCCTGAAGCGCCTCAAGGTGATTAACGGCACCTTCCCTGACGCCACCGAGGCCGCCGCATCCCTCGCCGTCCTCGC
CAAGATCGACCTGTCCGACGTCAAGATCTCCGAGGACTCGCTGAACTCCCTGCTCTCGAACTGCAGGGCGCTGGAGCGCC
TGAAGATCACTTCCATCAGCAAGTGCGACCGCCTCCATGTCCGGTCTAGGAGCCTCAAGGTCCTGAACACCAGTGGCGAC
TTCAAGGAGCTCTTCATTGACGACGCTCCCAACCTGGAGCAGGTGCTCGGCTGCTACCTGAACAGCAGGTCGGTCAAAAT
CATGATCGCGCACGCTCCAAAGCTGGAGTTCTTTGGCTACACCGGCATGAACAACGAGATTGAGTTTGGAAACACCAAGT
TCACCAAGTTCAGGGTAAGCTTATATAATTACTAATGAAGCAACCAAAAATTGACCTTCCAATCGCTTCCTGTAAATACT
TAATTG---ACCATTCTAATTGATGCAAATCCAGGAAAAGAATATTCATGCTGAGACCATTATGCCAAGCCTCAAGACAC
TAGCGGTCGACCTGATGCACACGCCGGACGGACACATCAACGAACATTACATCAACTGGTTTATGCAGCTGATCAAGGTG
TTCCCTTGCTTGGAGACGATCTACATCAAGGTAAATTGTTCTGACTGGTCACTGAATTGTTTA-TATCAGATATCTACTC
CATGTTGTCCCTTGCAATGATAGACCACGCATGTTTG--CCCAAATTCGCATTGGTGGATCCTGTTCCTGATTGAAATTT
TTGTAACAGTCGGACTCTTGGTCCGAGGCTCGTGACAGCTCCCCGGGGTCGTGGGACGTCCTAGCATCCGTTCCTTGCAT
GGACAACCACCTCGAGAAGGTGGTGTTCGAAGTTTACCGAGGACAGGAATGGCAGAGGGACATGGCCAAGTTCCTTCACG
GGAGGAGCAGGTTCCTCAAGACCATGGAGTTCCACTGCATGGACGATACTTCAAGAGAGGATTATGGCAGGGCTCCTACT
GAAGAATGGGTGAGGAAGCAGCAGGAGCTCTTGTGCCTCGACAGCCGGGCCTCGAGAGATGCTCGTTTCCTCTTTTTCAA
GAGTCAGCTGGTGGTCAACCATCATGAGTTCAGCCATAACGAGTCGTACCAGAGGGGTTATTATCGTGACATGTATAACC
TTTAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--
>chr3D_1_TraesCS3D01G282300
TTGTTATTTCATGTCACTTGATTTCAATCATGTGATATATGATCATTGTAATAGAGAAACATAATCAAGTAGCCCACGAA
CTAGTTAGGATGACTAAATTTTCTCCTTCTTTTGTCTAGATGGATTCCGTATTCCGCACCGGATGCGGTGCTATCCCATC
TTGTAAATGATGCAACAATTCTTGTGAGTGAATAAAGGAGAAGTTTGTCAAAAAAATTGTATTTTTAGAGAATGTCATCA
TGGCTTGCTTTATTGATTTGGTAAAATAGTTACATCGTTTACCAAGGCATCAACCAGGAAACCTGGGGGTTCATCTAC-C
GAATTACAAACCTAATTATGATCAAAAGAAAATTTAGCAATCTTATGAGCTACCTCGTTTGCTTCTCTAT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TACAATGCAAAAAATGAACAAATCCTATCATACCAGACAAAGTGGAG--CATTCTACATAAATTGCCGATGCT
CCGTTCCAAATTATGTCTTGTCCTGAGCAAGCATTAATCACCTACATCGAATCAGATTCTATTTGGATGAAATGAAACCC
CATATCATTAGCTAACATCAACCCATTTCTCATAGCTAGAGACTCAGCCATATGTGCATCAACTACATGGGGCATTGGAG
AGTAGGAGGCCGCCAAGAAGACCCCGTATTTGTCTCCGATGCCTGCACCCTTGGATCCTCTCAACTCATCAGCCAAAAAC
GATGCATCCATATCAAAAAAAAGTGTGTTGATATAGCTCGTGGTTTCGTTTTCTG------------TTTTTTTAGCAAA
TCGTTTTCTGTTGATGGAATCTCGAAAAACCGGCCTTTTTTACGAGATTATTAAAACGGGCCGA--TTTTTTGTTTTGAG
GAGATTGAAACCGGGCCATCCTTGGACCTGGAGTCCTACACGGATCAGCCTTTACCTAGGATCTGA----AGTCGGTCCA
CCGCCGCCCCGGCGCAGCAATACCTAGGATCGCACAAACCCCTAAAAAAAAACCTAGGATCGCACAAATTCACCGGAGAT
GGCG---GCCGCCGTCGGGGACGACCTCTTCCTCGACCGCCTCAGCGATCTCCCGGACATCATCCTGGTGACCATCCTCT
CCCGCCTCGACATGGACGAAGCGGCGAGGTGTTCAATCCTCAGCTCTCGCTGGCGCCGCCTCTTCCCATCCACCCTCCTC
GATTTCAAGGCCGGCGGTATTCGCCGCGACAGGGCCGTCGAGGCCGTCACCTCCATCCTCGCCGCCCACCCCACCGAGCC
CGTGCGCTCATTCAGCACGTACAGGCTCTCCTTCCGCCGCCAGGACGAGGACGCCGTTGACGGCTGGCTCCGGGATCTGG
CCAACCGCGGCATCGAAAAACTCGTCCTCTACTTCAACGAGAAGCGCCAGCAGAAGGTCCCGGAATCCCTCTTCGCCTGC
GCGTCCCTGAAGCGCCTCAAGGTGATTAACGGCACCTTCCCTGACGCCACCGAGGCCGCCGCATCCCTCGCCGTCCTCGC
CAAGATCGACCTGTCCGACGTCAAGATCTCCGAGGACTCGCTGAACTCCCTGCTCTCGAACTGCAGGGCGCTGGAGCGCC
TGAAGATCACTTCCATCAGCAAGTGCGACCGCCTCCATGTCCGGTCTAGGAGCCTCAAGGTCCTGAACACCAGTGGCGAC
TTCAAGGAGCTCTTCATTGACGACGCTCCCAACCTGGAGCAGGTGCTCGGCTGCTACCTGAACAGCAGGTCGGTCAAAAT
CATGATCGCGCACGCTCCAAAGCTGGAGTTCTTTGGCTACACCGGCATGAACAACGAGATTGAGTTTGGAAACACCAAGT
TCACCAAGTTCAGGGTAAGCTTATATAATTACTAATGAAGCAACCAAAAATTGACCTTCCAATCGCTTCCTGTAAATACT
TAATTG---ACCATTCTAATTGATGCAAATCCAGGAAAAGAATATTCATGCTGAGACCATTATGCCAAGCCTCAAGACAC
TAGCGGTCGACCTGATGCACACGCCGGACGGACACATCAACGAACATTACATCAACTGGTTTATGCAGCTGATCAAGGTG
TTCCCTTGCTTGGAGACGATCTACATCAAGGTAAATTGTTCTGACTGGTCACTGAATTGTTTA-TATCAGATATCTACTC
CATGTTGTCCCTTGCAATGATAGACCACGCATGTTTG--CCCAAATTCGCATTGGTGGATCCTGTTCCTGATTGAAATTT
TTGTAACAGTCGGACTCTTGGTCCGAGGCTCGTGACAGCTCCCCGGGGTCGTGGGACGTCCTAGCATCCGTTCCTTGCAT
GGACAACCACCTCGAGAAGGTGGTGTTCGAAGTTTACCGAGGACAGGAATGGCAGAGGGACATGGCCAAGTTCCTTCACG
GGAGGAGCAGGTTCCTCAAGACCATGGAGTTCCACTGCATGGACGATACTTCAAGAGAGGATTATGGCAGGGCTCCTACT
GAAGAATGGGTGAGGAAGCAGCAGGAGCTCTTGTGCCTCGACAGCCGGGCCTCGAGAGATGCTCGTTTCCTCTTTTTCAA
GAGTCAGCTGGTGGTCAACCATCATGAGTTCAGCCATAACGAGTCGTACCAGAGGGGTTATTATCGTGACATGTATAACC
TTTAATAA-GGAGTCTGTTATCTGCATAGAGTTGGCACACTTGAGTTACATTCTTCATTGTGGTTTTCTTATAGCGACTT
TATTGTGAAAATTGAGAATTCAAGATAGACGGTGTTTCTTGTTGTCAAA----TGTGGCTGAAGCATAGGGAGTTGGCCT
TCTTATTAAAATTTAGGATTGCCTATAGCGCAGTTGCCTGGTATATTTTCTAAGGGTGCGGTCAATTTGGCTCGTCGCTT
TCTTCAACCTCAACCCACCATAGCTCCGC-GTCTGCCATGGCCGCCTCTCACTAGCTCTAGGCTCGAGTGAGCATGAATC
ATGAGGAAATTGCTGGAAAATTGACTGTGATTCAAGCAAAT--------CTGGGCTACAGAAAATCTGCATAAAATTGTA
TA-CAGGGCCCTCAGATATCATCAGCTTGGACATGGAGTAGAACTTTCTGAATCATTTGTCACACCCGGTTGTCAAACCC
GGTGGTGCTTTATTCATTATTTTCCAAGTACTGATTTGCTATGAACTTGCAACTTGCAAGCGT-----------------
-----GTACAAACTTAACAGTTGGTGCAACAAATCGCCCCGGATTTCACAGTGACATGTTTCAGGTCGTAGCAAGGTTTT
GGTTACCAGTCGAAATTTCAAGATTTCCCATGGTTACCGTGTATTTCCGTGCCCCTCGGTAAATCCACATACCGAGCAAA
AAATACCATTATTTTTGAAAATTTTGAATTTTAACGCTCGATTTGTAGTAAAGTGCCTAGGATCTAATTAATGCAAGGAG
AGTTGATTCTGACGTGTTCATAGCAACCTAGTTCCTGTTTTGACAGGTCTTTGGTTTGAATGTTCGTTCATTCATTTATT
TGAATTCAAAATTCAACTATAAAATTCGTTCGAAATATTCTCGGTATTTCTCGGTATTTCCCGGTAACCGTGGTAACCAC
ATTTATCAGTCACCCTCGGTAAAATTGCCTCATTCGGTAACCAAAAGCTTGGGTCGTAGTGATAGCAGTTGGGTAAACAT
TT
>chr3A_1
TTGTTATTTCATGTCACCTGATTTCAATCGTGCGATATATGATCATTGTAATAGAGAAACGTAATCAAGTAGCCCCCGAA
CTAGCTAGGATGACTAAATTTTCTCCTTCTTCTGTCTAGATGGATTCCGGATTCCGCACCGGATGCGGTGCTAACCCATC
TTGTAAACGATGCAACAATTCTTGTAAGTGAATAAAGGAGAAGTTTGTCAAAAAATGTGTTTGTTTACGGAATGCCATCA
T-GCTTGCTTTATTGATTTGGTAAAATAATTATATCATTTGCGAAGGCATCAACCAGCAAACCTC-GGGTTCATCTAC-C
CAATTACAAACCTCATTATGATCAAAATAAAATTTAGCAATCATACGAGCTACCTTATTTGCTTCTTTAT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TACAATGCAAGAAATGAATAGATTCTATCATACCAGACAAAGTGAAG--CATTCTGCATAAATTGCCGATGCT
CCGTTCCCAATTATGTTTTATCCTGAGCAAGCATTAGTCACCTTCATCGAATCGGATTCTATTTGGATGAAATGGGA-CC
CATATCATTAGCTAACATCAACCCATTTCTCAT-GCTAGAGCCTCAGCCAAATGTGCATCAACTACATGGGGCATTGGAG
AGTAGGAGGCCGCCAAAAAGACCCCATATTCATCTCTGATGACCGCACGCGTGGATCCTCTCAACTCATCAGCCAAAAAC
GATGCATCCATGTCAAAAAAAAGTGTGTTGATATAGCTCGTGGTTTCGTTTTCTGTTGATATATTTTTTTTTCGAGCAAA
TCGTTTTCTGTTGATGGAATCTCAAAAAACCGGCCTTTTTTACGAGATC---AAAACCGGCCGATTTTTTTTGTTTTGAG
GAGATTGAAACCGGGCCATACTTGGACCTGGAGTCCTACACGGATCAGCCTTTAAAACC-CAAACTCCCTAGTCGATCCA
CCGCCGCACCGGCGCAGCAATACCTAGGATCACACTTGTCTA-AAAAAAAAAACTTGGATCGCACAAATTCACCGGAGAT
GGCG---GCCGCCGTCGGGGACGACCTCCTCCTCGACCGCCTCAGCGATCTCCCGGACATCATCCTGGTGACCATCCTCT
CCCGCCTCGACATGGACGAAGCGGCGAGGTGTTCAATCCTCAGCTCTCGCTGGCGCCGCCTCTTCCCATCCACCCTCCTC
GATTTCAAGGCCGGCAGTATTCGCCGCGACAGGGCCGTCGAGGCCGTCACCTCCATCCTCGCCGCCCACCCCACCGAGCC
CGTGCGCTCATTCAGCACGTACAGGCTCTCCTTCCGCCGCCAGGACGAGGACGCCGTCGACGGCTGGCTCCGGGATCTGG
CCAACCGCGGCATCGAAAAACTCGTCCTCTACTTCAACGAGAAGCGGCAGCAGAAGGTCCCGGAATCCCTCTTCGCCTGC
GCATCCCTGAAGCGCCTCAAGGTGATTAACGGCACCTTCCCTGACGCCACCGAGGCCGCCGCATCCCTCGCCGTCCTCGC
CAAGATCGACCTGTCCGACGTCAAGATCTCCGAGGACTCGCTGAACTCCCTGCTCTCGAACTGCAGGGCGCTGGAGCGCC
TGAAGATCACTTCCATCAGCAAGTGCGACCGCCTCCATATTCGGTCTCGGAGCCTCAAGGTCCTGAACACCAGTGGCGAC
TTCAAGGAGCTCTTCATTGACGACGCTCCCGACCTGGAGCAGGTGCTCGGCTACTACCTGAACAGCAGATCGGTCATAAT
CAAGATCGCGCACGCTCCAAAGCTGGAGTTCTTAGGCTACATCGGCATGAACAACGATATTGAGTTTGGAAACACCAAGT
TCACCAAGTTCAGGGTAAGCTTATA--ATTACTAATGAAGCAACCAGAGATTGACCTTGCAATCGCTTCCTGTAAATACT
TAATTG---ACCATTCTAATTGATGCAAATCCAGGAAAAGGACATTCATGCTGAGACCATTATGCCAAGCCTCAAGACTC
TAGCCGTCGACCTGATGCACACGCCGGACGGGCACATCAACGAACATTACATCAACTGGGTTATGCAGCTGCTCAAGGTG
TTCCCTTGCTTGGAGACGATCTACATCAAGGTAAATTGTTCTGACTGGTCACTGAATTGTTTA-TATCAGATATCTACTC
CGTGTTGTCCCTTGCAATGATGGACCGTGCATGTTTG--CCCAAATTTGCATTGGTGGATCCTATTCCTGATTGAAATTT
TTGTGACAGTCGGACTCTTGGTCCGAGGCTCGTGACGGCTCCCCGGGGTCGTGGGACGTCCTGTCATCCGTTCCTTGCAT
GGACAACCACCTCGAGAAGGTGGTGTTCGAAGTTTACCGAGGGCAGGAGTGGCAGAGGGACATGGCCAAGTTCCTTCATG
GCAGGAGCAGGTTCCTCAAGACCGTGGAGTTCCACTGCATGGACGATACTTCAAGAGAGGATTATGGCAGGGCTCCTACT
GAAGAATGGGTGAGGAAGCAGCAGGAGCTCTTGTGCCTCGACAGCCGGGCCGCGAGAGATGCTCGTTTCCTCTTCTTCAA
GAGTCAGCTGGTGGTCAACCATCATGAGTTCAGCCATAACGAATCGTACCAGAGGGGTTATTATCGTGACATGTATAACC
TTTAATAAAGGAGTCTGTTATCTGCATAGAGTTGGCACACTTAAGTTACATTTTTTATTGTGGTTTTCTTATAGCGACTT
TATTGTGAAAATTGAGAATTCAAGATAGACTGTGTTTCTAGTTGTCAAATTATTGTGGCTGAAGCATAGGGAGTTGCCTA
AC---TTAAAATTTAGGATTGCCTATAGCGCAGTTGCCTGGTATATTTTCTAAGGGTGCGGTCAATTTGGCTCGTCGCTT
TCTTCAAGCTCAACCAACCATAGCTCTGCCGTCTGCCATCGCCGCCTCTCGCTAGCTCTAGGCTCGACTGAGCATGAATC
A-GAGGAAATTGCTGAAAATTTGACTGTGGTTCAAACAAATCAGATCACCTGGGCTACCGAAAATCTGCATAAAATTGTA
TAACAGGGCCCTCAGATATCATAAGCTTAGACATGAAGTAGAACTTTCTGAATCATTTGTCACAT-------------CC
GGTGGTGCTTTATTCATTATTTCCCATGTACTATTTGCTG-TG-------AACTTGCAAGCGTTTTCTTTTTCAGGG---
-TACAGTACAAACTTAACAGTTGGTGCAACAAATCGCCCAGGACTTCATAGTGACATGTTTCA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GGTCGTAGTGATAGCAGTTGGGTAAACAT
TT
>chr6D_222
TTTTTA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AGGGAATGCCATCA
TGATTTACTTTATTGATTTGGTAAAATAGTTACATTGTTTGCCAAGGGATCAGCCAGGAACCTGG-TGGTTCATCGACCC
CAATTACAAAACTCGTTATGATCAAAAGAAAATTTGGCAACCTTATGAGCTACACTTGCAACCCTATTATTCCGTTCCTT
TATTTATACAAGGTGTATCTGGTTTTTTTTTTGGATAGAATTCCACAATATAAGGTGCATTTGGTCTAATTCCCCGTAAT
TCCGTTCTTGGCCCTGTAGAAAATGGAAAGTATATCTCCTCTGATTACATGTATCTCTCCTTGTAGAGAAAGAAAAGGAA
ATTATATCTCTTCCGATTGTGTGTATCTCTTCTTTACCAAGCCTAAATGATTACTTACCGATAATCAAGGAATTAGACAA
GGGTAATTTCAACCTAAATAGTCTATAATTACGTGCCTCGATCACCGTGCCAAAAATAATACACCTTATATAAAAGAATT
GATGGAGTACAATGTAAGAAATGAACAGATCCTGTCACACCCGACAAAAAGCAAACCATTCGGCATAAATCGTCGATGCT
CTGTTCCAAATTTTGTCTTGCCCTGAGCAAGTATTAATCACCTCCATTGAATCAGATTCTATTTGCATGGAATGGAACCC
CATATCATTAGCTAACATCAACACATTTCTCATAACTAGAGACGTAGCCATATGTGCATCAACTACATGGGGGATTGGAG
AGCAGGAGGCCACCAAGAAGACACCATATTCCTCTCGAATGACCACACCCGTGGGTCCTCTCAACTCATCAGCCAAAAAC
GATGCATCCACAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
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--
>chr3B_822
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AAACGGGCCCA--TTTTTTGTTTTGAG
GAGATTGAAACCGGGCCATACTTGGACCTGGAGTCCTACACGGATCAGCCTTTAAAGCCTCAAACTCCCTAGTCGATCCA
CCGCCGCTCCGGCGCAGCAAT------------------------------ACCTAGGATCGCACAAAATCACCGGAGAT
GGCCGCCGCCGCCGTCGGGGACGATCTCCTCCTCGACCGCCTCAGCGATCTCCCGGACATCATCCTGGTGACCATCCTCT
CCCGCCTTGACATGGACGAAGCGGCGAGGTGTTCAATCCTCAGCTCTCGCTGGCGCCGCCTCTTCCCATCCACCCTCCTC
GATTTCAAGGCCGGCAGTATTCGCTGCGACAGGGCCGTCGAGGCCGTCACCTCCATCCTCGCCGCCCACCCCACCGAGCC
CGTGCGCTCATTCAGCACGTACAGGCTCTCCTTCCGCCGCCAGGACGACGGCGCCGTCGACGGCTGGCTCCGGGATCTGG
CCAACCGCGGCATCGAAAAACTCGTCCTCTACTTCAACGAGAAGCGCCAGCAGAAGGTCCCGGATTCCCTCTTCGCCTGC
GCATCCCTGAAGCGCCTCAAGGTGATTAACGGCACCTTCCTTGACGCCACCGAGGCCGCCGCATCCCTCGCCGTCCTCGC
CAAGATCGACCTGTCCGACGTCAAGATCTCCCAGGACTCGCTGAACTCCCTGCTCTCGAACTGCAGGGCGCTGGAGCGCC
TGAAGATCACTTCCATCAGCAAGTGCGGCCGCCTCCATGTCCGGTCTCGGAGCCTCAAGGTCCTG---------------
--------------------------------------------------------------------------------
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--
>chr3B_1627
--------------------------------------------------------------------------------
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-------------------------------------------------------------------CACCAGTGGCGAC
TTCAAGGAGCTCTTCATTGACGACGCTCCCAACCTGGAGCAGGTGCTCGGCTGCTACCTGAACAGCAGGTCGGTCAAAAT
CGTGATCGCGCACGCTCCAAAGCTGGAGTTCTTAGGCTACATCGGCATGAACAACGAGATTGAGTTTGGAAACACCAAGT
TCACCAAGTTCAGGGTAAGCTTA----ATTGCTAATGAAGCAACCAGAAATTGACCTTGCAATCGCTTCCTGTAAGTACT
TAATTAATAACCATTCTAATTGATGCAAATCCAGGAAAAGAATATTCATGCTGAGACCATTATGCCAAGCCTCAAGACTC
TAGCCGTCGACCTGATGCACACGCCGGACGGGTACATCAACGAACATTACATCAACTGGGTTATGCAGCTGCTCAAGGTT
TTCCCTTGCTTGGAGACGATCTACATCAAGGTAAATTGTTCTGGCTGGTCACTGAATTGTGTATTATCAGATATCTACTC
CATGTTGTCCCTTGCAATGGTAGGCCACGCATGTTTTTACCCAAATTCGCATTGGTGGATCCTATTCCTGATTGAAATTT
TTGTAACAGTCGGACTCTTGGTCCGAGGCTCGTGACGGCTCCCCGGGGTCGTGGGACGTCCTGGCATCGGTTCCTTGCAT
GGACAACCACCTCGAGAAGGTGGTGTTCGAAGTTTACCGAGGGCAGGAGTGGCAGAGGGACATGGCCAAGTTCCTTCACG
GGAGGAGCAGGTTCCTCAAGACCATGGAGTTCCACTGCATGGACGATACTTCAAGAGAGGATTATGGCAGGGCTCCTACT
GAAGAATGGGTGAGGAAGCAGCAGGAGCTCTTGTGCCTCGACAGCCGGGCCGCGAGAGATGCTCGTTTCCTCTTCTTCAA
GAGTCCGTTGGTGGTCAACCATCATGAGTTCAGCCATAACGAGTCGTACCAGAGGGGTTATCATCGTGACATGTATAACC
TTTAAT-AAGGAGTCTGTTATCTGCATAGAGTTGGCACACTTAAGCTACATTCTTTATTGTGGTTTTCTTATAGCGACAT
TATTGTGAAAATTGAGAATTCAAGATAGGCTGTGTTTCTAGTTGTCAAATTATTGTGGCTGAAGCATAGGGAGTTGTCTA
AC---TTAAAATTTAGGATTGCCTATAGCGCAGTTGCCTGGTATATTTTCTAAGGGTGCGGTCAATTTGGCTCGTCGCGT
TCTTCAACCTCAACCCACCATAGCTCCGCCGACTGCCATCGCCGCCTCTCACTCGCTCTAGGCTCGAGTGAGCAGGAATC
A-GAGGAAATTGCTGAAAAATTGACTGTGATTCAAACAAATCAGATCATCTGGGCTACAGAAAATCTGCATAAAATTGTA
TA-CAGGGCCCTTAGATATCATCAGCTTAGAC---AAGTAGAACTTTCTGAATCATTTGTCACAC-------------CC
GGTGGTGCTTTATTCATTATTTCCCAAGTACTATTTTGTTATG-------AACTTGCAAGCGTTCTTTTTTTCAGGGTAC
ATACAGTACAAACTTAACAGTCGGTGCAACAAATCGCCCAGAACTTCATAGTGACATGTTTCA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GGTCGTAG---------------------
--
>SNPs
-----------------S-----------S--S---------------------------S--------------S----
----S--------------------------S-----------------S-----------------------S------
-------S-----------------S-----------------------------SS---S-S-----S-----S-----
----------------------------------------S------------------------S--------------
S------------S-----------------------------------------SS---------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S---------S-----------------------S----------S-----------------
-------------------------------------------S------------------------------S-----
--------------------------------------------------------------------------------
-------------------------S----SS----S----S-S------S-----------------------------
------------------------------------------------------------------------SS------
-----------------------S------------------------SSSS----------------------------
-------------------S----------------------------------SSSSSSSSSSSS---------S----
-------S-----------------------S---SSSS-SSS-------------------------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
---------------------------------S-------S--------------------------------------
-------------------------SS-------------------S-----------S---------------------
------------------------------------------------------------------------------S-
----S--------------------------S---------------------------S-----------S--------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
------------------------------------S-------------------------S-----------------
------------------------------------------S-----S-------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------S-----
--------------------------------------------------------------------------------
------------------------------------------S------------S------------------------
------------------------------S--------S------------------------------------S-SS
S-SSS---------------------------------------------------------------------------
---------------------------------------S----------------------------------------
-S-------------S-------------------S--------------------------------------------
----------------------------S------S-----------------------------SSSSSSSSSSSSS--
----------------------S---------SS----S----SSSSSSS------------------------------
---------------------------------------S---S----S--------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
--
>forward_1321
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------ACCTAGGATCGCACAAACCC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>reverse_2683
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ACAGGAATGGCAGAGGGACA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>forward_1322
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CCTAGGATCGCACAAACCCC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>reverse_2875
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTCAA
GAGTCAGCTGGTGGT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>forward_1323
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CTAGGATCGCACAAACCCCT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>reverse_3080
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------TGTTGTCAAATGTGGCTGAAGC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
