Multiple sequence alignment - TraesCS3D01G282000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G282000 chr3D 100.000 2345 0 0 1 2345 390072461 390074805 0.000000e+00 4331.0
1 TraesCS3D01G282000 chr3A 93.266 1678 86 14 674 2345 510688143 510689799 0.000000e+00 2447.0
2 TraesCS3D01G282000 chr3A 95.349 43 1 1 1763 1805 714070598 714070557 1.500000e-07 67.6
3 TraesCS3D01G282000 chr3B 90.250 1682 104 29 690 2343 507298635 507300284 0.000000e+00 2143.0
4 TraesCS3D01G282000 chr1D 81.818 110 17 3 88 196 480386265 480386158 3.210000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G282000 chr3D 390072461 390074805 2344 False 4331 4331 100.000 1 2345 1 chr3D.!!$F1 2344
1 TraesCS3D01G282000 chr3A 510688143 510689799 1656 False 2447 2447 93.266 674 2345 1 chr3A.!!$F1 1671
2 TraesCS3D01G282000 chr3B 507298635 507300284 1649 False 2143 2143 90.250 690 2343 1 chr3B.!!$F1 1653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 369 0.036388 AGCGAAAGGGATTGCGAGAA 60.036 50.0 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1385 1395 0.899717 GTGGAGCAGGCAATGGGAAA 60.9 55.0 0.0 0.0 0.0 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.052455 ACATTGCTACAATCGACACCA 57.948 42.857 0.00 0.00 0.00 4.17
21 22 3.002791 ACATTGCTACAATCGACACCAG 58.997 45.455 0.00 0.00 0.00 4.00
22 23 1.438651 TTGCTACAATCGACACCAGC 58.561 50.000 0.00 0.00 0.00 4.85
23 24 0.391130 TGCTACAATCGACACCAGCC 60.391 55.000 8.04 0.00 0.00 4.85
24 25 1.421410 GCTACAATCGACACCAGCCG 61.421 60.000 0.00 0.00 0.00 5.52
25 26 0.172578 CTACAATCGACACCAGCCGA 59.827 55.000 0.00 0.00 39.25 5.54
26 27 0.108992 TACAATCGACACCAGCCGAC 60.109 55.000 0.00 0.00 37.64 4.79
27 28 2.126071 AATCGACACCAGCCGACG 60.126 61.111 0.00 0.00 37.64 5.12
28 29 2.927580 AATCGACACCAGCCGACGT 61.928 57.895 0.00 0.00 37.64 4.34
29 30 2.430382 AATCGACACCAGCCGACGTT 62.430 55.000 0.00 0.00 37.64 3.99
30 31 3.403057 CGACACCAGCCGACGTTG 61.403 66.667 0.00 0.00 0.00 4.10
31 32 2.279918 GACACCAGCCGACGTTGT 60.280 61.111 1.30 0.00 0.00 3.32
32 33 1.007038 GACACCAGCCGACGTTGTA 60.007 57.895 1.30 0.00 0.00 2.41
33 34 0.598158 GACACCAGCCGACGTTGTAA 60.598 55.000 1.30 0.00 0.00 2.41
34 35 0.877213 ACACCAGCCGACGTTGTAAC 60.877 55.000 1.30 0.00 0.00 2.50
35 36 1.301165 ACCAGCCGACGTTGTAACC 60.301 57.895 1.30 0.00 0.00 2.85
36 37 2.377310 CCAGCCGACGTTGTAACCG 61.377 63.158 1.30 0.00 0.00 4.44
37 38 1.372004 CAGCCGACGTTGTAACCGA 60.372 57.895 1.30 0.00 0.00 4.69
38 39 0.734942 CAGCCGACGTTGTAACCGAT 60.735 55.000 1.30 0.00 0.00 4.18
39 40 0.810648 AGCCGACGTTGTAACCGATA 59.189 50.000 1.30 0.00 0.00 2.92
40 41 1.194495 GCCGACGTTGTAACCGATAG 58.806 55.000 1.30 0.00 0.00 2.08
41 42 1.468054 GCCGACGTTGTAACCGATAGT 60.468 52.381 1.30 0.00 0.00 2.12
42 43 2.444351 CCGACGTTGTAACCGATAGTC 58.556 52.381 1.30 0.00 0.00 2.59
43 44 2.096496 CCGACGTTGTAACCGATAGTCT 59.904 50.000 1.30 0.00 0.00 3.24
44 45 3.426695 CCGACGTTGTAACCGATAGTCTT 60.427 47.826 1.30 0.00 0.00 3.01
45 46 4.161333 CGACGTTGTAACCGATAGTCTTT 58.839 43.478 0.00 0.00 0.00 2.52
46 47 4.618489 CGACGTTGTAACCGATAGTCTTTT 59.382 41.667 0.00 0.00 0.00 2.27
47 48 5.117592 CGACGTTGTAACCGATAGTCTTTTT 59.882 40.000 0.00 0.00 0.00 1.94
63 64 0.671251 TTTTTGCTACAACCGGCAGG 59.329 50.000 0.00 0.00 45.13 4.85
64 65 0.179015 TTTTGCTACAACCGGCAGGA 60.179 50.000 10.86 0.00 41.02 3.86
65 66 0.605319 TTTGCTACAACCGGCAGGAG 60.605 55.000 10.86 0.26 41.02 3.69
66 67 2.820037 GCTACAACCGGCAGGAGC 60.820 66.667 14.46 14.46 41.02 4.70
67 68 2.662596 CTACAACCGGCAGGAGCA 59.337 61.111 10.86 0.00 44.61 4.26
68 69 1.448540 CTACAACCGGCAGGAGCAG 60.449 63.158 10.86 0.00 44.61 4.24
69 70 3.605749 TACAACCGGCAGGAGCAGC 62.606 63.158 10.86 0.00 44.61 5.25
70 71 4.711949 CAACCGGCAGGAGCAGCT 62.712 66.667 10.86 0.00 44.61 4.24
71 72 4.711949 AACCGGCAGGAGCAGCTG 62.712 66.667 10.86 10.11 44.61 4.24
85 86 3.127533 GCTGTCGGCGGCAATCTT 61.128 61.111 17.49 0.00 45.96 2.40
86 87 2.787249 CTGTCGGCGGCAATCTTG 59.213 61.111 17.49 0.00 0.00 3.02
87 88 2.031919 TGTCGGCGGCAATCTTGT 59.968 55.556 13.70 0.00 0.00 3.16
88 89 1.577328 CTGTCGGCGGCAATCTTGTT 61.577 55.000 17.49 0.00 0.00 2.83
89 90 1.169661 TGTCGGCGGCAATCTTGTTT 61.170 50.000 13.70 0.00 0.00 2.83
90 91 0.729140 GTCGGCGGCAATCTTGTTTG 60.729 55.000 6.63 0.00 0.00 2.93
98 99 2.407090 GCAATCTTGTTTGCTGGAACC 58.593 47.619 8.61 0.00 46.66 3.62
99 100 2.224018 GCAATCTTGTTTGCTGGAACCA 60.224 45.455 8.61 0.00 46.66 3.67
100 101 3.645884 CAATCTTGTTTGCTGGAACCAG 58.354 45.455 15.64 15.64 46.15 4.00
116 117 2.682893 CAGCGACTGGGATTGCTAC 58.317 57.895 0.00 0.00 37.20 3.58
117 118 0.108186 CAGCGACTGGGATTGCTACA 60.108 55.000 0.00 0.00 37.20 2.74
118 119 0.833287 AGCGACTGGGATTGCTACAT 59.167 50.000 0.00 0.00 37.57 2.29
119 120 1.202580 AGCGACTGGGATTGCTACATC 60.203 52.381 0.00 0.00 37.57 3.06
120 121 1.871080 CGACTGGGATTGCTACATCC 58.129 55.000 2.42 2.42 36.25 3.51
121 122 1.138859 CGACTGGGATTGCTACATCCA 59.861 52.381 11.00 0.59 38.68 3.41
122 123 2.565841 GACTGGGATTGCTACATCCAC 58.434 52.381 11.00 3.42 38.68 4.02
123 124 1.134401 ACTGGGATTGCTACATCCACG 60.134 52.381 11.00 5.08 38.68 4.94
124 125 0.180171 TGGGATTGCTACATCCACGG 59.820 55.000 11.00 0.00 38.68 4.94
125 126 0.180406 GGGATTGCTACATCCACGGT 59.820 55.000 11.00 0.00 38.68 4.83
126 127 1.299541 GGATTGCTACATCCACGGTG 58.700 55.000 0.00 0.00 36.95 4.94
127 128 1.299541 GATTGCTACATCCACGGTGG 58.700 55.000 21.27 21.27 39.43 4.61
128 129 0.618458 ATTGCTACATCCACGGTGGT 59.382 50.000 25.53 10.34 39.03 4.16
129 130 0.321210 TTGCTACATCCACGGTGGTG 60.321 55.000 25.53 22.74 43.99 4.17
139 140 3.300711 ACGGTGGTGAAGTAGTTGC 57.699 52.632 0.00 0.00 0.00 4.17
140 141 0.756903 ACGGTGGTGAAGTAGTTGCT 59.243 50.000 0.00 0.00 0.00 3.91
141 142 1.965643 ACGGTGGTGAAGTAGTTGCTA 59.034 47.619 0.00 0.00 0.00 3.49
142 143 2.366266 ACGGTGGTGAAGTAGTTGCTAA 59.634 45.455 0.00 0.00 0.00 3.09
143 144 2.993899 CGGTGGTGAAGTAGTTGCTAAG 59.006 50.000 0.00 0.00 0.00 2.18
144 145 3.335579 GGTGGTGAAGTAGTTGCTAAGG 58.664 50.000 0.00 0.00 0.00 2.69
145 146 3.244457 GGTGGTGAAGTAGTTGCTAAGGT 60.244 47.826 0.00 0.00 0.00 3.50
146 147 3.746492 GTGGTGAAGTAGTTGCTAAGGTG 59.254 47.826 0.00 0.00 0.00 4.00
147 148 2.742589 GGTGAAGTAGTTGCTAAGGTGC 59.257 50.000 0.00 0.00 0.00 5.01
148 149 3.557264 GGTGAAGTAGTTGCTAAGGTGCT 60.557 47.826 0.00 0.00 0.00 4.40
149 150 3.433615 GTGAAGTAGTTGCTAAGGTGCTG 59.566 47.826 0.00 0.00 0.00 4.41
150 151 2.770164 AGTAGTTGCTAAGGTGCTGG 57.230 50.000 0.00 0.00 0.00 4.85
151 152 2.257207 AGTAGTTGCTAAGGTGCTGGA 58.743 47.619 0.00 0.00 0.00 3.86
152 153 2.637872 AGTAGTTGCTAAGGTGCTGGAA 59.362 45.455 0.00 0.00 0.00 3.53
153 154 1.897560 AGTTGCTAAGGTGCTGGAAC 58.102 50.000 0.00 0.00 33.29 3.62
154 155 0.517316 GTTGCTAAGGTGCTGGAACG 59.483 55.000 0.00 0.00 0.00 3.95
155 156 0.605319 TTGCTAAGGTGCTGGAACGG 60.605 55.000 0.00 0.00 38.10 4.44
156 157 1.745489 GCTAAGGTGCTGGAACGGG 60.745 63.158 0.00 0.00 33.56 5.28
157 158 1.745489 CTAAGGTGCTGGAACGGGC 60.745 63.158 0.00 0.00 33.56 6.13
158 159 3.599285 TAAGGTGCTGGAACGGGCG 62.599 63.158 0.00 0.00 33.56 6.13
161 162 3.723348 GTGCTGGAACGGGCGAAC 61.723 66.667 0.00 0.00 33.56 3.95
162 163 3.936203 TGCTGGAACGGGCGAACT 61.936 61.111 0.00 0.00 33.56 3.01
163 164 2.263540 GCTGGAACGGGCGAACTA 59.736 61.111 0.00 0.00 33.56 2.24
164 165 1.153429 GCTGGAACGGGCGAACTAT 60.153 57.895 0.00 0.00 33.56 2.12
165 166 0.743345 GCTGGAACGGGCGAACTATT 60.743 55.000 0.00 0.00 33.56 1.73
166 167 1.287425 CTGGAACGGGCGAACTATTC 58.713 55.000 0.00 0.00 0.00 1.75
167 168 0.899720 TGGAACGGGCGAACTATTCT 59.100 50.000 0.00 0.00 0.00 2.40
168 169 1.287425 GGAACGGGCGAACTATTCTG 58.713 55.000 0.00 0.00 0.00 3.02
169 170 0.651031 GAACGGGCGAACTATTCTGC 59.349 55.000 0.00 0.00 0.00 4.26
170 171 0.249398 AACGGGCGAACTATTCTGCT 59.751 50.000 0.00 0.00 32.49 4.24
171 172 0.460284 ACGGGCGAACTATTCTGCTG 60.460 55.000 0.00 0.00 32.49 4.41
172 173 1.766143 CGGGCGAACTATTCTGCTGC 61.766 60.000 0.00 0.00 32.49 5.25
173 174 0.744414 GGGCGAACTATTCTGCTGCA 60.744 55.000 0.88 0.88 32.49 4.41
174 175 1.086696 GGCGAACTATTCTGCTGCAA 58.913 50.000 3.02 0.00 32.49 4.08
175 176 1.672881 GGCGAACTATTCTGCTGCAAT 59.327 47.619 3.02 0.00 32.49 3.56
176 177 2.540361 GGCGAACTATTCTGCTGCAATG 60.540 50.000 3.02 0.00 32.49 2.82
177 178 2.540361 GCGAACTATTCTGCTGCAATGG 60.540 50.000 3.02 0.00 0.00 3.16
178 179 2.032550 CGAACTATTCTGCTGCAATGGG 59.967 50.000 3.02 0.00 0.00 4.00
179 180 1.396653 ACTATTCTGCTGCAATGGGC 58.603 50.000 3.02 0.00 45.13 5.36
188 189 4.002797 GCAATGGGCGAGAAGGTT 57.997 55.556 0.00 0.00 0.00 3.50
189 190 2.267045 GCAATGGGCGAGAAGGTTT 58.733 52.632 0.00 0.00 0.00 3.27
190 191 0.109132 GCAATGGGCGAGAAGGTTTG 60.109 55.000 0.00 0.00 0.00 2.93
191 192 0.109132 CAATGGGCGAGAAGGTTTGC 60.109 55.000 0.00 0.00 0.00 3.68
192 193 0.251341 AATGGGCGAGAAGGTTTGCT 60.251 50.000 0.00 0.00 0.00 3.91
193 194 0.962356 ATGGGCGAGAAGGTTTGCTG 60.962 55.000 0.00 0.00 0.00 4.41
194 195 2.335712 GGGCGAGAAGGTTTGCTGG 61.336 63.158 0.00 0.00 0.00 4.85
195 196 1.302511 GGCGAGAAGGTTTGCTGGA 60.303 57.895 0.00 0.00 0.00 3.86
196 197 0.889186 GGCGAGAAGGTTTGCTGGAA 60.889 55.000 0.00 0.00 0.00 3.53
197 198 0.238553 GCGAGAAGGTTTGCTGGAAC 59.761 55.000 0.00 0.00 0.00 3.62
198 199 1.593196 CGAGAAGGTTTGCTGGAACA 58.407 50.000 0.00 0.00 0.00 3.18
214 215 4.245660 TGGAACAGACTATCTCTTTTGCG 58.754 43.478 0.00 0.00 31.34 4.85
215 216 4.021456 TGGAACAGACTATCTCTTTTGCGA 60.021 41.667 0.00 0.00 31.34 5.10
216 217 5.112686 GGAACAGACTATCTCTTTTGCGAT 58.887 41.667 0.00 0.00 0.00 4.58
217 218 6.127451 TGGAACAGACTATCTCTTTTGCGATA 60.127 38.462 0.00 0.00 31.34 2.92
218 219 6.757010 GGAACAGACTATCTCTTTTGCGATAA 59.243 38.462 0.00 0.00 0.00 1.75
219 220 7.254151 GGAACAGACTATCTCTTTTGCGATAAC 60.254 40.741 0.00 0.00 0.00 1.89
220 221 6.043411 ACAGACTATCTCTTTTGCGATAACC 58.957 40.000 0.00 0.00 0.00 2.85
221 222 5.174035 CAGACTATCTCTTTTGCGATAACCG 59.826 44.000 0.00 0.00 42.21 4.44
222 223 4.369182 ACTATCTCTTTTGCGATAACCGG 58.631 43.478 0.00 0.00 39.04 5.28
223 224 2.754946 TCTCTTTTGCGATAACCGGT 57.245 45.000 0.00 0.00 39.04 5.28
224 225 2.343101 TCTCTTTTGCGATAACCGGTG 58.657 47.619 8.52 0.00 39.04 4.94
225 226 1.396996 CTCTTTTGCGATAACCGGTGG 59.603 52.381 8.52 0.00 39.04 4.61
226 227 0.179174 CTTTTGCGATAACCGGTGGC 60.179 55.000 8.52 10.72 39.04 5.01
227 228 0.889638 TTTTGCGATAACCGGTGGCA 60.890 50.000 8.52 13.53 39.04 4.92
228 229 0.889638 TTTGCGATAACCGGTGGCAA 60.890 50.000 23.44 23.44 41.38 4.52
229 230 1.579084 TTGCGATAACCGGTGGCAAC 61.579 55.000 23.44 10.01 38.55 4.17
230 231 2.036006 GCGATAACCGGTGGCAACA 61.036 57.895 8.52 0.00 41.69 3.33
231 232 1.373590 GCGATAACCGGTGGCAACAT 61.374 55.000 8.52 0.00 44.55 2.71
232 233 2.878140 GCGATAACCGGTGGCAACATT 61.878 52.381 8.52 0.00 44.55 2.71
233 234 4.338328 GCGATAACCGGTGGCAACATTT 62.338 50.000 8.52 0.00 44.55 2.32
234 235 5.759760 GCGATAACCGGTGGCAACATTTT 62.760 47.826 8.52 0.00 44.55 1.82
252 253 3.363341 TTTTTGCTTTAGCTGGAACCG 57.637 42.857 0.00 0.00 42.66 4.44
253 254 2.264005 TTTGCTTTAGCTGGAACCGA 57.736 45.000 0.00 0.00 42.66 4.69
254 255 1.519408 TTGCTTTAGCTGGAACCGAC 58.481 50.000 0.00 0.00 42.66 4.79
255 256 0.394938 TGCTTTAGCTGGAACCGACA 59.605 50.000 0.00 0.00 42.66 4.35
256 257 0.796927 GCTTTAGCTGGAACCGACAC 59.203 55.000 0.00 0.00 38.21 3.67
257 258 1.068474 CTTTAGCTGGAACCGACACG 58.932 55.000 0.00 0.00 0.00 4.49
258 259 0.390124 TTTAGCTGGAACCGACACGT 59.610 50.000 0.00 0.00 0.00 4.49
259 260 0.319211 TTAGCTGGAACCGACACGTG 60.319 55.000 15.48 15.48 0.00 4.49
260 261 2.149803 TAGCTGGAACCGACACGTGG 62.150 60.000 21.57 4.43 0.00 4.94
261 262 2.732016 CTGGAACCGACACGTGGA 59.268 61.111 21.57 0.00 0.00 4.02
262 263 1.292223 CTGGAACCGACACGTGGAT 59.708 57.895 21.57 0.00 0.00 3.41
263 264 0.320421 CTGGAACCGACACGTGGATT 60.320 55.000 21.57 8.01 0.00 3.01
264 265 0.107081 TGGAACCGACACGTGGATTT 59.893 50.000 21.57 7.08 0.00 2.17
265 266 0.515564 GGAACCGACACGTGGATTTG 59.484 55.000 21.57 2.51 0.00 2.32
266 267 0.110373 GAACCGACACGTGGATTTGC 60.110 55.000 21.57 1.09 0.00 3.68
267 268 0.534203 AACCGACACGTGGATTTGCT 60.534 50.000 21.57 0.00 0.00 3.91
268 269 1.227999 ACCGACACGTGGATTTGCTG 61.228 55.000 21.57 1.78 0.00 4.41
269 270 0.948623 CCGACACGTGGATTTGCTGA 60.949 55.000 21.57 0.00 0.00 4.26
270 271 0.865111 CGACACGTGGATTTGCTGAA 59.135 50.000 21.57 0.00 0.00 3.02
271 272 1.398451 CGACACGTGGATTTGCTGAAC 60.398 52.381 21.57 0.00 0.00 3.18
272 273 0.951558 ACACGTGGATTTGCTGAACC 59.048 50.000 21.57 0.00 0.00 3.62
273 274 0.950836 CACGTGGATTTGCTGAACCA 59.049 50.000 7.95 0.00 0.00 3.67
274 275 1.069022 CACGTGGATTTGCTGAACCAG 60.069 52.381 7.95 0.00 32.89 4.00
275 276 0.523072 CGTGGATTTGCTGAACCAGG 59.477 55.000 0.00 0.00 32.89 4.45
276 277 0.890683 GTGGATTTGCTGAACCAGGG 59.109 55.000 0.00 0.00 32.89 4.45
277 278 0.776810 TGGATTTGCTGAACCAGGGA 59.223 50.000 0.00 0.00 31.21 4.20
278 279 1.177401 GGATTTGCTGAACCAGGGAC 58.823 55.000 0.00 0.00 31.21 4.46
279 280 1.177401 GATTTGCTGAACCAGGGACC 58.823 55.000 0.00 0.00 31.21 4.46
280 281 0.609131 ATTTGCTGAACCAGGGACCG 60.609 55.000 0.00 0.00 31.21 4.79
281 282 2.690653 TTTGCTGAACCAGGGACCGG 62.691 60.000 0.00 0.00 31.21 5.28
282 283 4.410400 GCTGAACCAGGGACCGGG 62.410 72.222 6.32 5.95 37.31 5.73
283 284 2.606519 CTGAACCAGGGACCGGGA 60.607 66.667 14.62 0.00 35.27 5.14
284 285 1.995626 CTGAACCAGGGACCGGGAT 60.996 63.158 14.62 1.87 35.27 3.85
285 286 1.540367 TGAACCAGGGACCGGGATT 60.540 57.895 14.62 5.00 35.27 3.01
286 287 1.077716 GAACCAGGGACCGGGATTG 60.078 63.158 14.62 0.00 35.27 2.67
287 288 3.282374 AACCAGGGACCGGGATTGC 62.282 63.158 14.62 0.00 35.27 3.56
288 289 3.411517 CCAGGGACCGGGATTGCT 61.412 66.667 6.32 0.00 32.98 3.91
289 290 2.124570 CAGGGACCGGGATTGCTG 60.125 66.667 6.32 0.00 0.00 4.41
290 291 4.115199 AGGGACCGGGATTGCTGC 62.115 66.667 6.32 0.00 0.00 5.25
291 292 4.424711 GGGACCGGGATTGCTGCA 62.425 66.667 6.32 0.00 0.00 4.41
292 293 2.124151 GGACCGGGATTGCTGCAT 60.124 61.111 6.32 0.00 0.00 3.96
293 294 2.189499 GGACCGGGATTGCTGCATC 61.189 63.158 6.32 3.38 0.00 3.91
294 295 2.124151 ACCGGGATTGCTGCATCC 60.124 61.111 6.32 17.44 36.25 3.51
295 296 2.124193 CCGGGATTGCTGCATCCA 60.124 61.111 23.25 4.53 38.68 3.41
296 297 1.753848 CCGGGATTGCTGCATCCAA 60.754 57.895 23.25 4.58 38.68 3.53
297 298 1.731433 CCGGGATTGCTGCATCCAAG 61.731 60.000 23.25 18.06 38.68 3.61
298 299 1.731433 CGGGATTGCTGCATCCAAGG 61.731 60.000 23.25 13.29 38.68 3.61
299 300 0.685458 GGGATTGCTGCATCCAAGGT 60.685 55.000 23.25 0.59 38.68 3.50
300 301 0.458669 GGATTGCTGCATCCAAGGTG 59.541 55.000 19.52 0.00 36.95 4.00
301 302 0.458669 GATTGCTGCATCCAAGGTGG 59.541 55.000 1.84 0.00 39.43 4.61
302 303 0.251922 ATTGCTGCATCCAAGGTGGT 60.252 50.000 1.84 0.00 39.03 4.16
303 304 1.180456 TTGCTGCATCCAAGGTGGTG 61.180 55.000 1.84 0.00 39.03 4.17
304 305 1.303561 GCTGCATCCAAGGTGGTGA 60.304 57.895 0.00 0.00 39.03 4.02
305 306 1.310933 GCTGCATCCAAGGTGGTGAG 61.311 60.000 0.00 0.00 39.03 3.51
306 307 1.303561 TGCATCCAAGGTGGTGAGC 60.304 57.895 0.00 0.00 39.03 4.26
307 308 1.303561 GCATCCAAGGTGGTGAGCA 60.304 57.895 0.00 0.00 39.03 4.26
308 309 1.310933 GCATCCAAGGTGGTGAGCAG 61.311 60.000 0.00 0.00 39.03 4.24
309 310 0.037303 CATCCAAGGTGGTGAGCAGT 59.963 55.000 0.00 0.00 39.03 4.40
310 311 0.326264 ATCCAAGGTGGTGAGCAGTC 59.674 55.000 0.00 0.00 39.03 3.51
311 312 1.669115 CCAAGGTGGTGAGCAGTCG 60.669 63.158 0.00 0.00 31.35 4.18
312 313 2.031163 AAGGTGGTGAGCAGTCGC 59.969 61.111 0.00 0.00 38.99 5.19
317 318 4.767255 GGTGAGCAGTCGCCCAGG 62.767 72.222 0.00 0.00 46.39 4.45
318 319 4.008933 GTGAGCAGTCGCCCAGGT 62.009 66.667 0.00 0.00 39.83 4.00
319 320 4.007644 TGAGCAGTCGCCCAGGTG 62.008 66.667 0.00 0.00 39.83 4.00
331 332 2.669569 CAGGTGCTGGAACCGGTG 60.670 66.667 8.52 0.00 45.53 4.94
332 333 2.847234 AGGTGCTGGAACCGGTGA 60.847 61.111 8.52 0.00 45.53 4.02
333 334 2.668550 GGTGCTGGAACCGGTGAC 60.669 66.667 8.52 4.52 0.00 3.67
334 335 2.426023 GTGCTGGAACCGGTGACT 59.574 61.111 8.52 0.00 0.00 3.41
335 336 1.227853 GTGCTGGAACCGGTGACTT 60.228 57.895 8.52 0.00 0.00 3.01
336 337 0.818040 GTGCTGGAACCGGTGACTTT 60.818 55.000 8.52 0.00 0.00 2.66
337 338 0.106918 TGCTGGAACCGGTGACTTTT 60.107 50.000 8.52 0.00 0.00 2.27
338 339 1.029681 GCTGGAACCGGTGACTTTTT 58.970 50.000 8.52 0.00 0.00 1.94
357 358 5.964887 TTTTTGTTTCAATCAGCGAAAGG 57.035 34.783 0.00 0.00 33.20 3.11
358 359 3.641437 TTGTTTCAATCAGCGAAAGGG 57.359 42.857 0.00 0.00 33.20 3.95
359 360 2.857483 TGTTTCAATCAGCGAAAGGGA 58.143 42.857 0.00 0.00 33.20 4.20
360 361 3.420893 TGTTTCAATCAGCGAAAGGGAT 58.579 40.909 0.00 0.00 33.20 3.85
361 362 3.826157 TGTTTCAATCAGCGAAAGGGATT 59.174 39.130 0.00 0.00 33.20 3.01
362 363 4.168760 GTTTCAATCAGCGAAAGGGATTG 58.831 43.478 7.15 7.15 45.73 2.67
363 364 1.745087 TCAATCAGCGAAAGGGATTGC 59.255 47.619 8.34 0.00 44.63 3.56
364 365 0.734889 AATCAGCGAAAGGGATTGCG 59.265 50.000 0.00 0.00 30.51 4.85
365 366 0.107703 ATCAGCGAAAGGGATTGCGA 60.108 50.000 0.00 0.00 0.00 5.10
366 367 0.740868 TCAGCGAAAGGGATTGCGAG 60.741 55.000 0.00 0.00 0.00 5.03
367 368 0.740868 CAGCGAAAGGGATTGCGAGA 60.741 55.000 0.00 0.00 0.00 4.04
368 369 0.036388 AGCGAAAGGGATTGCGAGAA 60.036 50.000 0.00 0.00 0.00 2.87
369 370 0.097150 GCGAAAGGGATTGCGAGAAC 59.903 55.000 0.00 0.00 0.00 3.01
370 371 0.727398 CGAAAGGGATTGCGAGAACC 59.273 55.000 0.00 0.00 0.00 3.62
371 372 0.727398 GAAAGGGATTGCGAGAACCG 59.273 55.000 0.00 0.00 42.21 4.44
372 373 0.676782 AAAGGGATTGCGAGAACCGG 60.677 55.000 0.00 0.00 39.04 5.28
373 374 3.202706 GGGATTGCGAGAACCGGC 61.203 66.667 0.00 0.00 39.04 6.13
374 375 3.202706 GGATTGCGAGAACCGGCC 61.203 66.667 0.00 0.00 39.04 6.13
375 376 2.435938 GATTGCGAGAACCGGCCA 60.436 61.111 0.00 0.00 39.04 5.36
376 377 2.033448 ATTGCGAGAACCGGCCAA 59.967 55.556 0.00 0.00 39.04 4.52
377 378 1.582610 GATTGCGAGAACCGGCCAAA 61.583 55.000 0.00 0.00 39.04 3.28
378 379 1.175983 ATTGCGAGAACCGGCCAAAA 61.176 50.000 0.00 0.00 39.04 2.44
379 380 1.175983 TTGCGAGAACCGGCCAAAAT 61.176 50.000 0.00 0.00 39.04 1.82
380 381 1.154035 GCGAGAACCGGCCAAAATG 60.154 57.895 0.00 0.00 39.04 2.32
381 382 1.154035 CGAGAACCGGCCAAAATGC 60.154 57.895 0.00 0.00 33.91 3.56
382 383 1.586154 CGAGAACCGGCCAAAATGCT 61.586 55.000 0.00 0.00 33.91 3.79
383 384 0.603065 GAGAACCGGCCAAAATGCTT 59.397 50.000 0.00 0.00 0.00 3.91
384 385 0.318120 AGAACCGGCCAAAATGCTTG 59.682 50.000 0.00 0.00 0.00 4.01
385 386 0.316841 GAACCGGCCAAAATGCTTGA 59.683 50.000 0.00 0.00 0.00 3.02
386 387 0.975887 AACCGGCCAAAATGCTTGAT 59.024 45.000 0.00 0.00 0.00 2.57
387 388 0.247185 ACCGGCCAAAATGCTTGATG 59.753 50.000 0.00 0.00 0.00 3.07
388 389 0.247185 CCGGCCAAAATGCTTGATGT 59.753 50.000 2.24 0.00 0.00 3.06
389 390 1.338011 CCGGCCAAAATGCTTGATGTT 60.338 47.619 2.24 0.00 0.00 2.71
390 391 1.727880 CGGCCAAAATGCTTGATGTTG 59.272 47.619 2.24 0.00 0.00 3.33
392 393 2.078392 GCCAAAATGCTTGATGTTGGG 58.922 47.619 6.59 0.00 46.44 4.12
393 394 2.550639 GCCAAAATGCTTGATGTTGGGT 60.551 45.455 6.59 0.00 46.44 4.51
394 395 3.742385 CCAAAATGCTTGATGTTGGGTT 58.258 40.909 0.00 0.00 43.61 4.11
395 396 3.499157 CCAAAATGCTTGATGTTGGGTTG 59.501 43.478 0.00 0.00 43.61 3.77
396 397 3.405823 AAATGCTTGATGTTGGGTTGG 57.594 42.857 0.00 0.00 0.00 3.77
397 398 1.269012 ATGCTTGATGTTGGGTTGGG 58.731 50.000 0.00 0.00 0.00 4.12
398 399 0.831288 TGCTTGATGTTGGGTTGGGG 60.831 55.000 0.00 0.00 0.00 4.96
399 400 0.541764 GCTTGATGTTGGGTTGGGGA 60.542 55.000 0.00 0.00 0.00 4.81
400 401 2.008242 CTTGATGTTGGGTTGGGGAA 57.992 50.000 0.00 0.00 0.00 3.97
401 402 1.618343 CTTGATGTTGGGTTGGGGAAC 59.382 52.381 0.00 0.00 0.00 3.62
402 403 0.538516 TGATGTTGGGTTGGGGAACG 60.539 55.000 0.00 0.00 0.00 3.95
403 404 0.250989 GATGTTGGGTTGGGGAACGA 60.251 55.000 0.00 0.00 0.00 3.85
404 405 0.538746 ATGTTGGGTTGGGGAACGAC 60.539 55.000 0.00 0.00 0.00 4.34
405 406 2.111460 TTGGGTTGGGGAACGACG 59.889 61.111 0.00 0.00 34.03 5.12
406 407 3.479127 TTGGGTTGGGGAACGACGG 62.479 63.158 0.00 0.00 34.03 4.79
418 419 4.735132 CGACGGCGGGCTGAGAAA 62.735 66.667 13.24 0.00 0.00 2.52
419 420 2.358247 GACGGCGGGCTGAGAAAA 60.358 61.111 13.24 0.00 0.00 2.29
420 421 1.964373 GACGGCGGGCTGAGAAAAA 60.964 57.895 13.24 0.00 0.00 1.94
445 446 3.220658 AACCGGCGTTTGGGTTGG 61.221 61.111 6.01 0.00 44.56 3.77
446 447 4.509580 ACCGGCGTTTGGGTTGGT 62.510 61.111 6.01 0.00 30.73 3.67
447 448 3.220658 CCGGCGTTTGGGTTGGTT 61.221 61.111 6.01 0.00 0.00 3.67
448 449 2.026879 CGGCGTTTGGGTTGGTTG 59.973 61.111 0.00 0.00 0.00 3.77
449 450 2.279851 GGCGTTTGGGTTGGTTGC 60.280 61.111 0.00 0.00 0.00 4.17
450 451 2.279851 GCGTTTGGGTTGGTTGCC 60.280 61.111 0.00 0.00 0.00 4.52
451 452 2.026879 CGTTTGGGTTGGTTGCCG 59.973 61.111 0.00 0.00 0.00 5.69
452 453 2.279851 GTTTGGGTTGGTTGCCGC 60.280 61.111 0.00 0.00 0.00 6.53
453 454 3.905678 TTTGGGTTGGTTGCCGCG 61.906 61.111 0.00 0.00 0.00 6.46
454 455 4.877619 TTGGGTTGGTTGCCGCGA 62.878 61.111 8.23 0.00 0.00 5.87
455 456 4.877619 TGGGTTGGTTGCCGCGAA 62.878 61.111 8.23 0.00 0.00 4.70
456 457 4.337060 GGGTTGGTTGCCGCGAAC 62.337 66.667 8.23 4.59 0.00 3.95
457 458 4.337060 GGTTGGTTGCCGCGAACC 62.337 66.667 19.78 19.78 45.06 3.62
462 463 4.072088 GTTGCCGCGAACCACGAG 62.072 66.667 8.23 0.00 45.77 4.18
487 488 2.638329 GACGAGAACGACGACCATG 58.362 57.895 0.00 0.00 42.66 3.66
488 489 0.109873 GACGAGAACGACGACCATGT 60.110 55.000 0.00 0.00 42.66 3.21
489 490 1.129251 GACGAGAACGACGACCATGTA 59.871 52.381 0.00 0.00 42.66 2.29
490 491 1.135859 ACGAGAACGACGACCATGTAC 60.136 52.381 0.00 0.00 42.66 2.90
491 492 1.792993 CGAGAACGACGACCATGTACC 60.793 57.143 0.00 0.00 42.66 3.34
492 493 1.200716 GAGAACGACGACCATGTACCA 59.799 52.381 0.00 0.00 0.00 3.25
493 494 1.822990 AGAACGACGACCATGTACCAT 59.177 47.619 0.00 0.00 0.00 3.55
494 495 1.924524 GAACGACGACCATGTACCATG 59.075 52.381 0.00 0.00 0.00 3.66
495 496 0.174845 ACGACGACCATGTACCATGG 59.825 55.000 19.19 19.19 44.54 3.66
496 497 0.458260 CGACGACCATGTACCATGGA 59.542 55.000 25.79 0.00 41.64 3.41
497 498 1.536072 CGACGACCATGTACCATGGAG 60.536 57.143 25.79 20.26 41.64 3.86
498 499 0.178068 ACGACCATGTACCATGGAGC 59.822 55.000 25.79 16.64 41.64 4.70
499 500 0.177836 CGACCATGTACCATGGAGCA 59.822 55.000 25.79 16.65 41.64 4.26
500 501 1.807755 CGACCATGTACCATGGAGCAG 60.808 57.143 25.79 8.18 41.64 4.24
501 502 0.107017 ACCATGTACCATGGAGCAGC 60.107 55.000 25.79 3.86 41.64 5.25
502 503 1.162181 CCATGTACCATGGAGCAGCG 61.162 60.000 21.47 11.23 41.64 5.18
503 504 1.146930 ATGTACCATGGAGCAGCGG 59.853 57.895 21.47 0.00 0.00 5.52
504 505 2.203070 GTACCATGGAGCAGCGGG 60.203 66.667 21.47 0.00 0.00 6.13
505 506 2.687200 TACCATGGAGCAGCGGGT 60.687 61.111 21.47 0.00 35.66 5.28
506 507 3.030168 TACCATGGAGCAGCGGGTG 62.030 63.158 21.47 2.14 33.14 4.61
573 574 4.069232 CGGGAGCTGTGCGAGGAA 62.069 66.667 0.00 0.00 0.00 3.36
574 575 2.125350 GGGAGCTGTGCGAGGAAG 60.125 66.667 0.00 0.00 0.00 3.46
575 576 2.650116 GGGAGCTGTGCGAGGAAGA 61.650 63.158 0.00 0.00 0.00 2.87
576 577 1.293498 GGAGCTGTGCGAGGAAGAA 59.707 57.895 0.00 0.00 0.00 2.52
577 578 0.739112 GGAGCTGTGCGAGGAAGAAG 60.739 60.000 0.00 0.00 0.00 2.85
578 579 0.244994 GAGCTGTGCGAGGAAGAAGA 59.755 55.000 0.00 0.00 0.00 2.87
579 580 0.681733 AGCTGTGCGAGGAAGAAGAA 59.318 50.000 0.00 0.00 0.00 2.52
580 581 1.070758 AGCTGTGCGAGGAAGAAGAAA 59.929 47.619 0.00 0.00 0.00 2.52
581 582 1.195674 GCTGTGCGAGGAAGAAGAAAC 59.804 52.381 0.00 0.00 0.00 2.78
582 583 2.760374 CTGTGCGAGGAAGAAGAAACT 58.240 47.619 0.00 0.00 0.00 2.66
583 584 2.734079 CTGTGCGAGGAAGAAGAAACTC 59.266 50.000 0.00 0.00 0.00 3.01
587 588 2.597520 CGAGGAAGAAGAAACTCGGAC 58.402 52.381 0.00 0.00 46.44 4.79
588 589 2.671632 CGAGGAAGAAGAAACTCGGACC 60.672 54.545 0.00 0.00 46.44 4.46
589 590 1.272769 AGGAAGAAGAAACTCGGACCG 59.727 52.381 7.84 7.84 0.00 4.79
590 591 1.271656 GGAAGAAGAAACTCGGACCGA 59.728 52.381 17.28 17.28 0.00 4.69
591 592 2.288640 GGAAGAAGAAACTCGGACCGAA 60.289 50.000 18.93 1.85 34.74 4.30
592 593 2.435533 AGAAGAAACTCGGACCGAAC 57.564 50.000 18.93 9.62 34.74 3.95
593 594 1.000618 AGAAGAAACTCGGACCGAACC 59.999 52.381 18.93 7.16 34.74 3.62
601 602 2.153039 CGGACCGAACCGTTTTACC 58.847 57.895 8.64 0.00 46.70 2.85
602 603 0.599728 CGGACCGAACCGTTTTACCA 60.600 55.000 8.64 0.00 46.70 3.25
603 604 1.150827 GGACCGAACCGTTTTACCAG 58.849 55.000 0.00 0.00 0.00 4.00
604 605 1.270252 GGACCGAACCGTTTTACCAGA 60.270 52.381 0.00 0.00 0.00 3.86
605 606 2.613725 GGACCGAACCGTTTTACCAGAT 60.614 50.000 0.00 0.00 0.00 2.90
606 607 2.669924 GACCGAACCGTTTTACCAGATC 59.330 50.000 0.00 0.00 0.00 2.75
607 608 2.037511 ACCGAACCGTTTTACCAGATCA 59.962 45.455 0.00 0.00 0.00 2.92
608 609 3.068560 CCGAACCGTTTTACCAGATCAA 58.931 45.455 0.00 0.00 0.00 2.57
609 610 3.499157 CCGAACCGTTTTACCAGATCAAA 59.501 43.478 0.00 0.00 0.00 2.69
610 611 4.460505 CGAACCGTTTTACCAGATCAAAC 58.539 43.478 0.00 0.00 0.00 2.93
615 616 4.414999 GTTTTACCAGATCAAACGACCC 57.585 45.455 0.00 0.00 0.00 4.46
616 617 3.773418 TTTACCAGATCAAACGACCCA 57.227 42.857 0.00 0.00 0.00 4.51
617 618 2.754946 TACCAGATCAAACGACCCAC 57.245 50.000 0.00 0.00 0.00 4.61
618 619 0.762418 ACCAGATCAAACGACCCACA 59.238 50.000 0.00 0.00 0.00 4.17
619 620 1.156736 CCAGATCAAACGACCCACAC 58.843 55.000 0.00 0.00 0.00 3.82
620 621 0.790207 CAGATCAAACGACCCACACG 59.210 55.000 0.00 0.00 0.00 4.49
621 622 0.320421 AGATCAAACGACCCACACGG 60.320 55.000 0.00 0.00 37.81 4.94
639 640 4.194720 GCTCGCATCCGACGGACT 62.195 66.667 21.02 5.85 38.82 3.85
640 641 2.278206 CTCGCATCCGACGGACTG 60.278 66.667 21.02 18.49 38.82 3.51
641 642 4.492160 TCGCATCCGACGGACTGC 62.492 66.667 27.39 27.39 38.82 4.40
671 672 4.886925 GCCGGCGCGTTAGCATTG 62.887 66.667 12.58 0.00 45.49 2.82
672 673 4.236416 CCGGCGCGTTAGCATTGG 62.236 66.667 8.43 0.00 45.49 3.16
682 683 3.375922 GCGTTAGCATTGGCCTACTAAAA 59.624 43.478 3.32 0.00 44.35 1.52
751 752 0.984230 CAGCTGAAAGGGGTCCAGTA 59.016 55.000 8.42 0.00 0.00 2.74
830 838 4.884668 AGGTAGACTTTTCGGTCATTCA 57.115 40.909 0.00 0.00 38.57 2.57
937 947 2.104253 CCCCAAAATCCCGTCGTCG 61.104 63.158 0.00 0.00 0.00 5.12
1188 1198 4.570874 GATCCGGGAAGCAGGGCC 62.571 72.222 0.00 0.00 0.00 5.80
1355 1365 0.107459 GTCAGATGAAGGCCCTCCAC 60.107 60.000 0.00 0.00 33.74 4.02
1385 1395 7.151308 TCAAAATCTTGCAATTTGGTACGATT 58.849 30.769 18.96 10.90 35.34 3.34
1391 1401 3.574396 TGCAATTTGGTACGATTTTCCCA 59.426 39.130 0.00 0.00 0.00 4.37
1395 1405 3.859411 TTGGTACGATTTTCCCATTGC 57.141 42.857 0.00 0.00 0.00 3.56
1396 1406 2.096248 TGGTACGATTTTCCCATTGCC 58.904 47.619 0.00 0.00 0.00 4.52
1401 1411 1.202336 CGATTTTCCCATTGCCTGCTC 60.202 52.381 0.00 0.00 0.00 4.26
1406 1416 2.345760 CCCATTGCCTGCTCCACAC 61.346 63.158 0.00 0.00 0.00 3.82
1408 1418 0.968901 CCATTGCCTGCTCCACACAT 60.969 55.000 0.00 0.00 0.00 3.21
1409 1419 1.682702 CCATTGCCTGCTCCACACATA 60.683 52.381 0.00 0.00 0.00 2.29
1410 1420 2.304092 CATTGCCTGCTCCACACATAT 58.696 47.619 0.00 0.00 0.00 1.78
1411 1421 3.479489 CATTGCCTGCTCCACACATATA 58.521 45.455 0.00 0.00 0.00 0.86
1413 1423 3.407424 TGCCTGCTCCACACATATATC 57.593 47.619 0.00 0.00 0.00 1.63
1415 1425 3.244318 TGCCTGCTCCACACATATATCTG 60.244 47.826 0.00 0.00 0.00 2.90
1436 1451 4.183865 TGAATAAAGACATCTCGCCTGTG 58.816 43.478 0.00 0.00 0.00 3.66
1473 1488 2.954792 TGATATCTCCTCTGAGCTGCA 58.045 47.619 1.02 0.00 38.58 4.41
1480 1495 0.725686 CCTCTGAGCTGCACATTTCG 59.274 55.000 1.02 0.00 0.00 3.46
1487 1502 0.448990 GCTGCACATTTCGATCTGCA 59.551 50.000 5.13 5.13 37.30 4.41
1515 1553 5.002464 AGAATATGCACAATTCCACTTGC 57.998 39.130 16.30 0.00 34.50 4.01
1523 1561 4.293415 CACAATTCCACTTGCAGTTTCTC 58.707 43.478 0.00 0.00 0.00 2.87
1602 1640 8.458573 TGTACACTTGTTTTACATCTGGAATT 57.541 30.769 0.00 0.00 0.00 2.17
1636 1674 3.876914 GGTGATTTACAGATCGGCATCAA 59.123 43.478 5.06 0.00 0.00 2.57
1641 1679 2.425143 ACAGATCGGCATCAACCAAT 57.575 45.000 0.00 0.00 0.00 3.16
1643 1681 3.091545 ACAGATCGGCATCAACCAATTT 58.908 40.909 0.00 0.00 0.00 1.82
1646 1684 5.036737 CAGATCGGCATCAACCAATTTTAC 58.963 41.667 0.00 0.00 0.00 2.01
1682 1721 1.992170 ACTGCTAACACGTCGAATCC 58.008 50.000 0.00 0.00 0.00 3.01
1771 1810 4.794169 ACGCTTCATAAAACCACACATTC 58.206 39.130 0.00 0.00 0.00 2.67
1930 1969 3.808728 TCCTTTGTGTCCTCTTCTGTTG 58.191 45.455 0.00 0.00 0.00 3.33
1957 1996 5.738619 TGTCAGCAGGAGTATTAGAACAA 57.261 39.130 0.00 0.00 0.00 2.83
1973 2012 4.327680 AGAACAACAGATAGGCAAAGGAC 58.672 43.478 0.00 0.00 0.00 3.85
1975 2014 2.038557 ACAACAGATAGGCAAAGGACGT 59.961 45.455 0.00 0.00 0.00 4.34
1978 2017 2.093973 ACAGATAGGCAAAGGACGTGAG 60.094 50.000 0.00 0.00 0.00 3.51
1980 2019 0.905357 ATAGGCAAAGGACGTGAGCT 59.095 50.000 0.00 0.00 0.00 4.09
1981 2020 0.685097 TAGGCAAAGGACGTGAGCTT 59.315 50.000 0.00 0.00 0.00 3.74
1993 2032 3.448686 ACGTGAGCTTAAATGATCCGAG 58.551 45.455 0.00 0.00 0.00 4.63
2004 2043 7.469181 GCTTAAATGATCCGAGGAATTGACAAT 60.469 37.037 0.00 0.00 0.00 2.71
2007 2046 3.947196 TGATCCGAGGAATTGACAATTGG 59.053 43.478 18.00 12.41 0.00 3.16
2139 2178 2.010145 TCTGCAAGACATTACGGAGC 57.990 50.000 0.00 0.00 38.67 4.70
2146 2185 1.146358 GACATTACGGAGCGGCTCAC 61.146 60.000 29.33 18.00 31.08 3.51
2158 2197 2.226269 GGCTCACGACAAGACACAC 58.774 57.895 0.00 0.00 0.00 3.82
2161 2200 1.866171 CTCACGACAAGACACACGCG 61.866 60.000 3.53 3.53 0.00 6.01
2204 2243 9.408648 TCAGAAGTTTATGATCCTAATTTTCCC 57.591 33.333 0.00 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.002791 CTGGTGTCGATTGTAGCAATGT 58.997 45.455 0.00 0.00 0.00 2.71
1 2 2.223112 GCTGGTGTCGATTGTAGCAATG 60.223 50.000 9.02 0.00 0.00 2.82
2 3 2.009774 GCTGGTGTCGATTGTAGCAAT 58.990 47.619 9.02 0.00 0.00 3.56
3 4 1.438651 GCTGGTGTCGATTGTAGCAA 58.561 50.000 9.02 0.00 0.00 3.91
4 5 0.391130 GGCTGGTGTCGATTGTAGCA 60.391 55.000 13.93 5.66 33.05 3.49
5 6 1.421410 CGGCTGGTGTCGATTGTAGC 61.421 60.000 0.00 0.00 45.19 3.58
6 7 0.172578 TCGGCTGGTGTCGATTGTAG 59.827 55.000 0.00 0.00 45.98 2.74
7 8 2.268999 TCGGCTGGTGTCGATTGTA 58.731 52.632 0.00 0.00 45.98 2.41
8 9 3.056458 TCGGCTGGTGTCGATTGT 58.944 55.556 0.00 0.00 45.98 2.71
13 14 2.736343 TACAACGTCGGCTGGTGTCG 62.736 60.000 5.85 0.00 43.50 4.35
14 15 0.598158 TTACAACGTCGGCTGGTGTC 60.598 55.000 5.85 0.00 0.00 3.67
15 16 0.877213 GTTACAACGTCGGCTGGTGT 60.877 55.000 7.61 7.61 0.00 4.16
16 17 1.562575 GGTTACAACGTCGGCTGGTG 61.563 60.000 0.00 0.00 0.00 4.17
17 18 1.301165 GGTTACAACGTCGGCTGGT 60.301 57.895 0.00 0.00 0.00 4.00
18 19 2.377310 CGGTTACAACGTCGGCTGG 61.377 63.158 0.00 0.00 0.00 4.85
19 20 0.734942 ATCGGTTACAACGTCGGCTG 60.735 55.000 0.00 0.00 0.00 4.85
20 21 0.810648 TATCGGTTACAACGTCGGCT 59.189 50.000 0.00 0.00 0.00 5.52
21 22 1.194495 CTATCGGTTACAACGTCGGC 58.806 55.000 0.00 0.00 0.00 5.54
22 23 2.096496 AGACTATCGGTTACAACGTCGG 59.904 50.000 0.00 0.00 0.00 4.79
23 24 3.395858 AGACTATCGGTTACAACGTCG 57.604 47.619 0.00 0.00 0.00 5.12
24 25 6.457851 AAAAAGACTATCGGTTACAACGTC 57.542 37.500 0.00 0.00 0.00 4.34
44 45 0.671251 CCTGCCGGTTGTAGCAAAAA 59.329 50.000 1.90 0.00 38.82 1.94
45 46 0.179015 TCCTGCCGGTTGTAGCAAAA 60.179 50.000 1.90 0.00 38.82 2.44
46 47 0.605319 CTCCTGCCGGTTGTAGCAAA 60.605 55.000 1.90 0.00 38.82 3.68
47 48 1.003839 CTCCTGCCGGTTGTAGCAA 60.004 57.895 1.90 0.00 38.82 3.91
48 49 2.662596 CTCCTGCCGGTTGTAGCA 59.337 61.111 1.90 0.00 37.46 3.49
49 50 2.820037 GCTCCTGCCGGTTGTAGC 60.820 66.667 1.90 4.15 0.00 3.58
50 51 1.448540 CTGCTCCTGCCGGTTGTAG 60.449 63.158 1.90 0.00 38.71 2.74
51 52 2.662596 CTGCTCCTGCCGGTTGTA 59.337 61.111 1.90 0.00 38.71 2.41
53 54 4.711949 AGCTGCTCCTGCCGGTTG 62.712 66.667 1.90 0.00 38.71 3.77
54 55 4.711949 CAGCTGCTCCTGCCGGTT 62.712 66.667 0.00 0.00 38.71 4.44
66 67 3.869272 GATTGCCGCCGACAGCTG 61.869 66.667 13.48 13.48 40.39 4.24
67 68 3.612247 AAGATTGCCGCCGACAGCT 62.612 57.895 0.00 0.00 40.39 4.24
68 69 3.127533 AAGATTGCCGCCGACAGC 61.128 61.111 0.00 0.00 38.52 4.40
69 70 1.577328 AACAAGATTGCCGCCGACAG 61.577 55.000 0.00 0.00 0.00 3.51
70 71 1.169661 AAACAAGATTGCCGCCGACA 61.170 50.000 0.00 0.00 0.00 4.35
71 72 0.729140 CAAACAAGATTGCCGCCGAC 60.729 55.000 0.00 0.00 0.00 4.79
72 73 1.578926 CAAACAAGATTGCCGCCGA 59.421 52.632 0.00 0.00 0.00 5.54
73 74 4.151417 CAAACAAGATTGCCGCCG 57.849 55.556 0.00 0.00 0.00 6.46
79 80 3.645884 CTGGTTCCAGCAAACAAGATTG 58.354 45.455 5.89 0.00 32.76 2.67
98 99 0.108186 TGTAGCAATCCCAGTCGCTG 60.108 55.000 0.00 0.52 35.93 5.18
99 100 0.833287 ATGTAGCAATCCCAGTCGCT 59.167 50.000 0.00 0.00 38.51 4.93
100 101 1.221414 GATGTAGCAATCCCAGTCGC 58.779 55.000 0.00 0.00 0.00 5.19
101 102 1.138859 TGGATGTAGCAATCCCAGTCG 59.861 52.381 9.78 0.00 44.88 4.18
102 103 2.565841 GTGGATGTAGCAATCCCAGTC 58.434 52.381 9.78 0.00 44.88 3.51
103 104 1.134401 CGTGGATGTAGCAATCCCAGT 60.134 52.381 9.78 0.00 44.88 4.00
104 105 1.586422 CGTGGATGTAGCAATCCCAG 58.414 55.000 9.78 2.08 44.88 4.45
105 106 0.180171 CCGTGGATGTAGCAATCCCA 59.820 55.000 9.78 0.00 44.88 4.37
106 107 0.180406 ACCGTGGATGTAGCAATCCC 59.820 55.000 9.78 2.57 44.88 3.85
107 108 1.299541 CACCGTGGATGTAGCAATCC 58.700 55.000 6.22 6.22 45.57 3.01
108 109 1.299541 CCACCGTGGATGTAGCAATC 58.700 55.000 12.68 0.00 40.96 2.67
109 110 0.618458 ACCACCGTGGATGTAGCAAT 59.382 50.000 24.80 0.00 40.96 3.56
110 111 0.321210 CACCACCGTGGATGTAGCAA 60.321 55.000 24.80 0.00 40.96 3.91
111 112 1.188871 TCACCACCGTGGATGTAGCA 61.189 55.000 24.80 0.68 40.96 3.49
112 113 0.036765 TTCACCACCGTGGATGTAGC 60.037 55.000 24.80 0.00 40.96 3.58
113 114 1.275291 ACTTCACCACCGTGGATGTAG 59.725 52.381 24.80 20.07 40.96 2.74
114 115 1.344065 ACTTCACCACCGTGGATGTA 58.656 50.000 24.80 10.97 40.96 2.29
115 116 1.275291 CTACTTCACCACCGTGGATGT 59.725 52.381 24.80 16.73 40.96 3.06
116 117 1.275291 ACTACTTCACCACCGTGGATG 59.725 52.381 24.80 17.13 40.96 3.51
117 118 1.640917 ACTACTTCACCACCGTGGAT 58.359 50.000 24.80 5.71 40.96 3.41
118 119 1.069513 CAACTACTTCACCACCGTGGA 59.930 52.381 24.80 0.00 40.96 4.02
119 120 1.508632 CAACTACTTCACCACCGTGG 58.491 55.000 16.47 16.47 45.02 4.94
120 121 0.865769 GCAACTACTTCACCACCGTG 59.134 55.000 0.00 0.00 41.72 4.94
121 122 0.756903 AGCAACTACTTCACCACCGT 59.243 50.000 0.00 0.00 0.00 4.83
122 123 2.736144 TAGCAACTACTTCACCACCG 57.264 50.000 0.00 0.00 0.00 4.94
123 124 3.244457 ACCTTAGCAACTACTTCACCACC 60.244 47.826 0.00 0.00 0.00 4.61
124 125 3.746492 CACCTTAGCAACTACTTCACCAC 59.254 47.826 0.00 0.00 0.00 4.16
125 126 3.805807 GCACCTTAGCAACTACTTCACCA 60.806 47.826 0.00 0.00 0.00 4.17
126 127 2.742589 GCACCTTAGCAACTACTTCACC 59.257 50.000 0.00 0.00 0.00 4.02
127 128 3.433615 CAGCACCTTAGCAACTACTTCAC 59.566 47.826 0.00 0.00 36.85 3.18
128 129 3.557054 CCAGCACCTTAGCAACTACTTCA 60.557 47.826 0.00 0.00 36.85 3.02
129 130 3.003480 CCAGCACCTTAGCAACTACTTC 58.997 50.000 0.00 0.00 36.85 3.01
130 131 2.637872 TCCAGCACCTTAGCAACTACTT 59.362 45.455 0.00 0.00 36.85 2.24
131 132 2.257207 TCCAGCACCTTAGCAACTACT 58.743 47.619 0.00 0.00 36.85 2.57
132 133 2.742589 GTTCCAGCACCTTAGCAACTAC 59.257 50.000 0.00 0.00 36.85 2.73
133 134 2.611971 CGTTCCAGCACCTTAGCAACTA 60.612 50.000 0.00 0.00 36.85 2.24
134 135 1.878102 CGTTCCAGCACCTTAGCAACT 60.878 52.381 0.00 0.00 36.85 3.16
135 136 0.517316 CGTTCCAGCACCTTAGCAAC 59.483 55.000 0.00 0.00 36.85 4.17
136 137 0.605319 CCGTTCCAGCACCTTAGCAA 60.605 55.000 0.00 0.00 36.85 3.91
137 138 1.003839 CCGTTCCAGCACCTTAGCA 60.004 57.895 0.00 0.00 36.85 3.49
138 139 1.745489 CCCGTTCCAGCACCTTAGC 60.745 63.158 0.00 0.00 0.00 3.09
139 140 1.745489 GCCCGTTCCAGCACCTTAG 60.745 63.158 0.00 0.00 0.00 2.18
140 141 2.349755 GCCCGTTCCAGCACCTTA 59.650 61.111 0.00 0.00 0.00 2.69
144 145 2.775032 TAGTTCGCCCGTTCCAGCAC 62.775 60.000 0.00 0.00 0.00 4.40
145 146 1.895020 ATAGTTCGCCCGTTCCAGCA 61.895 55.000 0.00 0.00 0.00 4.41
146 147 0.743345 AATAGTTCGCCCGTTCCAGC 60.743 55.000 0.00 0.00 0.00 4.85
147 148 1.134788 AGAATAGTTCGCCCGTTCCAG 60.135 52.381 0.00 0.00 34.02 3.86
148 149 0.899720 AGAATAGTTCGCCCGTTCCA 59.100 50.000 0.00 0.00 34.02 3.53
149 150 1.287425 CAGAATAGTTCGCCCGTTCC 58.713 55.000 0.00 0.00 34.02 3.62
150 151 0.651031 GCAGAATAGTTCGCCCGTTC 59.349 55.000 0.00 0.00 34.02 3.95
151 152 0.249398 AGCAGAATAGTTCGCCCGTT 59.751 50.000 0.00 0.00 32.34 4.44
152 153 0.460284 CAGCAGAATAGTTCGCCCGT 60.460 55.000 0.00 0.00 32.34 5.28
153 154 1.766143 GCAGCAGAATAGTTCGCCCG 61.766 60.000 0.00 0.00 32.34 6.13
154 155 0.744414 TGCAGCAGAATAGTTCGCCC 60.744 55.000 0.00 0.00 32.34 6.13
155 156 1.086696 TTGCAGCAGAATAGTTCGCC 58.913 50.000 0.00 0.00 32.34 5.54
156 157 2.540361 CCATTGCAGCAGAATAGTTCGC 60.540 50.000 0.00 0.00 34.02 4.70
157 158 2.032550 CCCATTGCAGCAGAATAGTTCG 59.967 50.000 0.00 0.00 34.02 3.95
158 159 2.223665 GCCCATTGCAGCAGAATAGTTC 60.224 50.000 0.00 0.00 40.77 3.01
159 160 1.753073 GCCCATTGCAGCAGAATAGTT 59.247 47.619 0.00 0.00 40.77 2.24
160 161 1.396653 GCCCATTGCAGCAGAATAGT 58.603 50.000 0.00 0.00 40.77 2.12
161 162 0.309922 CGCCCATTGCAGCAGAATAG 59.690 55.000 0.00 0.00 41.33 1.73
162 163 0.107263 TCGCCCATTGCAGCAGAATA 60.107 50.000 0.00 0.00 41.33 1.75
163 164 1.378911 TCGCCCATTGCAGCAGAAT 60.379 52.632 0.00 0.00 41.33 2.40
164 165 2.033911 TCGCCCATTGCAGCAGAA 59.966 55.556 0.00 0.00 41.33 3.02
165 166 2.437180 CTCGCCCATTGCAGCAGA 60.437 61.111 0.00 0.00 41.33 4.26
166 167 1.989966 CTTCTCGCCCATTGCAGCAG 61.990 60.000 0.00 0.00 41.33 4.24
167 168 2.033911 TTCTCGCCCATTGCAGCA 59.966 55.556 0.00 0.00 41.33 4.41
168 169 2.768492 CCTTCTCGCCCATTGCAGC 61.768 63.158 0.00 0.00 41.33 5.25
169 170 0.962356 AACCTTCTCGCCCATTGCAG 60.962 55.000 0.00 0.00 41.33 4.41
170 171 0.539438 AAACCTTCTCGCCCATTGCA 60.539 50.000 0.00 0.00 41.33 4.08
171 172 0.109132 CAAACCTTCTCGCCCATTGC 60.109 55.000 0.00 0.00 0.00 3.56
172 173 0.109132 GCAAACCTTCTCGCCCATTG 60.109 55.000 0.00 0.00 0.00 2.82
173 174 0.251341 AGCAAACCTTCTCGCCCATT 60.251 50.000 0.00 0.00 0.00 3.16
174 175 0.962356 CAGCAAACCTTCTCGCCCAT 60.962 55.000 0.00 0.00 0.00 4.00
175 176 1.600636 CAGCAAACCTTCTCGCCCA 60.601 57.895 0.00 0.00 0.00 5.36
176 177 2.335712 CCAGCAAACCTTCTCGCCC 61.336 63.158 0.00 0.00 0.00 6.13
177 178 0.889186 TTCCAGCAAACCTTCTCGCC 60.889 55.000 0.00 0.00 0.00 5.54
178 179 0.238553 GTTCCAGCAAACCTTCTCGC 59.761 55.000 0.00 0.00 0.00 5.03
179 180 1.532868 CTGTTCCAGCAAACCTTCTCG 59.467 52.381 0.00 0.00 0.00 4.04
180 181 2.550180 GTCTGTTCCAGCAAACCTTCTC 59.450 50.000 0.00 0.00 0.00 2.87
181 182 2.173569 AGTCTGTTCCAGCAAACCTTCT 59.826 45.455 0.00 0.00 0.00 2.85
182 183 2.576615 AGTCTGTTCCAGCAAACCTTC 58.423 47.619 0.00 0.00 0.00 3.46
183 184 2.736670 AGTCTGTTCCAGCAAACCTT 57.263 45.000 0.00 0.00 0.00 3.50
184 185 3.584848 AGATAGTCTGTTCCAGCAAACCT 59.415 43.478 0.00 0.00 0.00 3.50
185 186 3.935828 GAGATAGTCTGTTCCAGCAAACC 59.064 47.826 0.00 0.00 0.00 3.27
186 187 4.826556 AGAGATAGTCTGTTCCAGCAAAC 58.173 43.478 0.00 0.00 32.57 2.93
187 188 5.489792 AAGAGATAGTCTGTTCCAGCAAA 57.510 39.130 0.00 0.00 34.84 3.68
188 189 5.489792 AAAGAGATAGTCTGTTCCAGCAA 57.510 39.130 0.00 0.00 34.84 3.91
189 190 5.240891 CAAAAGAGATAGTCTGTTCCAGCA 58.759 41.667 0.00 0.00 34.84 4.41
190 191 4.094146 GCAAAAGAGATAGTCTGTTCCAGC 59.906 45.833 0.00 0.00 34.84 4.85
191 192 4.328440 CGCAAAAGAGATAGTCTGTTCCAG 59.672 45.833 0.00 0.00 34.84 3.86
192 193 4.021456 TCGCAAAAGAGATAGTCTGTTCCA 60.021 41.667 0.00 0.00 34.84 3.53
193 194 4.495422 TCGCAAAAGAGATAGTCTGTTCC 58.505 43.478 0.00 0.00 34.84 3.62
194 195 7.254151 GGTTATCGCAAAAGAGATAGTCTGTTC 60.254 40.741 0.00 0.00 34.84 3.18
195 196 6.535508 GGTTATCGCAAAAGAGATAGTCTGTT 59.464 38.462 0.00 0.00 34.84 3.16
196 197 6.043411 GGTTATCGCAAAAGAGATAGTCTGT 58.957 40.000 0.00 0.00 34.84 3.41
197 198 5.174035 CGGTTATCGCAAAAGAGATAGTCTG 59.826 44.000 0.00 0.00 34.84 3.51
198 199 5.282510 CGGTTATCGCAAAAGAGATAGTCT 58.717 41.667 0.00 0.00 36.94 3.24
199 200 4.444720 CCGGTTATCGCAAAAGAGATAGTC 59.555 45.833 0.00 0.00 37.59 2.59
200 201 4.142004 ACCGGTTATCGCAAAAGAGATAGT 60.142 41.667 0.00 0.00 37.59 2.12
201 202 4.209288 CACCGGTTATCGCAAAAGAGATAG 59.791 45.833 2.97 0.00 37.59 2.08
202 203 4.116961 CACCGGTTATCGCAAAAGAGATA 58.883 43.478 2.97 0.00 37.59 1.98
203 204 2.936498 CACCGGTTATCGCAAAAGAGAT 59.064 45.455 2.97 0.00 37.59 2.75
204 205 2.343101 CACCGGTTATCGCAAAAGAGA 58.657 47.619 2.97 0.00 37.59 3.10
205 206 1.396996 CCACCGGTTATCGCAAAAGAG 59.603 52.381 2.97 0.00 37.59 2.85
206 207 1.444836 CCACCGGTTATCGCAAAAGA 58.555 50.000 2.97 0.00 37.59 2.52
207 208 0.179174 GCCACCGGTTATCGCAAAAG 60.179 55.000 2.97 0.00 37.59 2.27
208 209 0.889638 TGCCACCGGTTATCGCAAAA 60.890 50.000 2.97 0.00 37.59 2.44
209 210 0.889638 TTGCCACCGGTTATCGCAAA 60.890 50.000 20.10 8.64 36.56 3.68
210 211 1.302591 TTGCCACCGGTTATCGCAA 60.303 52.632 19.03 19.03 37.12 4.85
211 212 2.036006 GTTGCCACCGGTTATCGCA 61.036 57.895 2.97 7.95 37.59 5.10
212 213 1.373590 ATGTTGCCACCGGTTATCGC 61.374 55.000 2.97 4.90 37.59 4.58
213 214 1.091537 AATGTTGCCACCGGTTATCG 58.908 50.000 2.97 0.00 38.88 2.92
214 215 3.586100 AAAATGTTGCCACCGGTTATC 57.414 42.857 2.97 0.00 0.00 1.75
232 233 2.952978 TCGGTTCCAGCTAAAGCAAAAA 59.047 40.909 4.54 0.00 45.16 1.94
233 234 2.292292 GTCGGTTCCAGCTAAAGCAAAA 59.708 45.455 4.54 0.00 45.16 2.44
234 235 1.877443 GTCGGTTCCAGCTAAAGCAAA 59.123 47.619 4.54 0.00 45.16 3.68
235 236 1.202710 TGTCGGTTCCAGCTAAAGCAA 60.203 47.619 4.54 0.00 45.16 3.91
236 237 0.394938 TGTCGGTTCCAGCTAAAGCA 59.605 50.000 4.54 0.00 45.16 3.91
237 238 0.796927 GTGTCGGTTCCAGCTAAAGC 59.203 55.000 0.00 0.00 42.49 3.51
238 239 1.068474 CGTGTCGGTTCCAGCTAAAG 58.932 55.000 0.00 0.00 0.00 1.85
239 240 0.390124 ACGTGTCGGTTCCAGCTAAA 59.610 50.000 0.00 0.00 0.00 1.85
240 241 0.319211 CACGTGTCGGTTCCAGCTAA 60.319 55.000 7.58 0.00 0.00 3.09
241 242 1.287815 CACGTGTCGGTTCCAGCTA 59.712 57.895 7.58 0.00 0.00 3.32
242 243 2.029073 CACGTGTCGGTTCCAGCT 59.971 61.111 7.58 0.00 0.00 4.24
243 244 2.781595 ATCCACGTGTCGGTTCCAGC 62.782 60.000 15.65 0.00 0.00 4.85
244 245 0.320421 AATCCACGTGTCGGTTCCAG 60.320 55.000 15.65 0.00 0.00 3.86
245 246 0.107081 AAATCCACGTGTCGGTTCCA 59.893 50.000 15.65 0.00 0.00 3.53
246 247 0.515564 CAAATCCACGTGTCGGTTCC 59.484 55.000 15.65 0.00 0.00 3.62
247 248 0.110373 GCAAATCCACGTGTCGGTTC 60.110 55.000 15.65 0.00 0.00 3.62
248 249 0.534203 AGCAAATCCACGTGTCGGTT 60.534 50.000 15.65 0.00 0.00 4.44
249 250 1.070786 AGCAAATCCACGTGTCGGT 59.929 52.632 15.65 0.39 0.00 4.69
250 251 0.948623 TCAGCAAATCCACGTGTCGG 60.949 55.000 15.65 0.00 0.00 4.79
251 252 0.865111 TTCAGCAAATCCACGTGTCG 59.135 50.000 15.65 0.00 0.00 4.35
252 253 1.069227 GGTTCAGCAAATCCACGTGTC 60.069 52.381 15.65 0.00 0.00 3.67
253 254 0.951558 GGTTCAGCAAATCCACGTGT 59.048 50.000 15.65 0.00 0.00 4.49
254 255 0.950836 TGGTTCAGCAAATCCACGTG 59.049 50.000 9.08 9.08 0.00 4.49
255 256 1.238439 CTGGTTCAGCAAATCCACGT 58.762 50.000 0.00 0.00 0.00 4.49
256 257 0.523072 CCTGGTTCAGCAAATCCACG 59.477 55.000 0.00 0.00 0.00 4.94
257 258 0.890683 CCCTGGTTCAGCAAATCCAC 59.109 55.000 0.00 0.00 0.00 4.02
258 259 0.776810 TCCCTGGTTCAGCAAATCCA 59.223 50.000 0.00 0.00 0.00 3.41
259 260 1.177401 GTCCCTGGTTCAGCAAATCC 58.823 55.000 0.00 0.00 0.00 3.01
260 261 1.177401 GGTCCCTGGTTCAGCAAATC 58.823 55.000 0.00 0.00 0.00 2.17
261 262 0.609131 CGGTCCCTGGTTCAGCAAAT 60.609 55.000 0.00 0.00 0.00 2.32
262 263 1.228124 CGGTCCCTGGTTCAGCAAA 60.228 57.895 0.00 0.00 0.00 3.68
263 264 2.429930 CGGTCCCTGGTTCAGCAA 59.570 61.111 0.00 0.00 0.00 3.91
264 265 3.636231 CCGGTCCCTGGTTCAGCA 61.636 66.667 0.00 0.00 0.00 4.41
265 266 4.410400 CCCGGTCCCTGGTTCAGC 62.410 72.222 0.00 0.00 0.00 4.26
266 267 1.562672 AATCCCGGTCCCTGGTTCAG 61.563 60.000 0.00 0.00 0.00 3.02
267 268 1.540367 AATCCCGGTCCCTGGTTCA 60.540 57.895 0.00 0.00 0.00 3.18
268 269 1.077716 CAATCCCGGTCCCTGGTTC 60.078 63.158 0.00 0.00 0.00 3.62
269 270 3.087065 CAATCCCGGTCCCTGGTT 58.913 61.111 0.00 0.00 0.00 3.67
270 271 3.728373 GCAATCCCGGTCCCTGGT 61.728 66.667 0.00 0.00 0.00 4.00
271 272 3.411517 AGCAATCCCGGTCCCTGG 61.412 66.667 0.00 0.00 0.00 4.45
272 273 2.124570 CAGCAATCCCGGTCCCTG 60.125 66.667 0.00 0.00 0.00 4.45
273 274 4.115199 GCAGCAATCCCGGTCCCT 62.115 66.667 0.00 0.00 0.00 4.20
274 275 3.721370 ATGCAGCAATCCCGGTCCC 62.721 63.158 0.00 0.00 0.00 4.46
275 276 2.124151 ATGCAGCAATCCCGGTCC 60.124 61.111 0.00 0.00 0.00 4.46
276 277 2.189499 GGATGCAGCAATCCCGGTC 61.189 63.158 3.51 0.00 40.36 4.79
277 278 2.124151 GGATGCAGCAATCCCGGT 60.124 61.111 3.51 0.00 40.36 5.28
278 279 1.731433 CTTGGATGCAGCAATCCCGG 61.731 60.000 16.74 0.00 44.88 5.73
279 280 1.731433 CCTTGGATGCAGCAATCCCG 61.731 60.000 16.74 10.30 44.88 5.14
280 281 0.685458 ACCTTGGATGCAGCAATCCC 60.685 55.000 16.74 11.49 44.88 3.85
281 282 0.458669 CACCTTGGATGCAGCAATCC 59.541 55.000 3.51 8.02 45.57 3.01
282 283 0.458669 CCACCTTGGATGCAGCAATC 59.541 55.000 3.51 0.00 40.96 2.67
283 284 0.251922 ACCACCTTGGATGCAGCAAT 60.252 50.000 3.51 0.00 40.96 3.56
284 285 1.153524 ACCACCTTGGATGCAGCAA 59.846 52.632 3.51 0.00 40.96 3.91
285 286 1.604308 CACCACCTTGGATGCAGCA 60.604 57.895 3.51 0.00 40.96 4.41
286 287 1.303561 TCACCACCTTGGATGCAGC 60.304 57.895 0.00 0.00 40.96 5.25
287 288 1.310933 GCTCACCACCTTGGATGCAG 61.311 60.000 0.00 0.00 40.96 4.41
288 289 1.303561 GCTCACCACCTTGGATGCA 60.304 57.895 0.00 0.00 40.96 3.96
289 290 1.303561 TGCTCACCACCTTGGATGC 60.304 57.895 0.00 1.15 40.96 3.91
290 291 0.037303 ACTGCTCACCACCTTGGATG 59.963 55.000 0.00 0.00 40.96 3.51
291 292 0.326264 GACTGCTCACCACCTTGGAT 59.674 55.000 0.00 0.00 40.96 3.41
292 293 1.754745 GACTGCTCACCACCTTGGA 59.245 57.895 0.00 0.00 40.96 3.53
293 294 1.669115 CGACTGCTCACCACCTTGG 60.669 63.158 0.00 0.00 45.02 3.61
294 295 2.320587 GCGACTGCTCACCACCTTG 61.321 63.158 0.00 0.00 38.39 3.61
295 296 2.031163 GCGACTGCTCACCACCTT 59.969 61.111 0.00 0.00 38.39 3.50
296 297 4.008933 GGCGACTGCTCACCACCT 62.009 66.667 0.00 0.00 42.25 4.00
314 315 2.669569 CACCGGTTCCAGCACCTG 60.670 66.667 2.97 0.00 34.22 4.00
315 316 2.847234 TCACCGGTTCCAGCACCT 60.847 61.111 2.97 0.00 34.22 4.00
316 317 2.668550 GTCACCGGTTCCAGCACC 60.669 66.667 2.97 0.00 0.00 5.01
317 318 0.818040 AAAGTCACCGGTTCCAGCAC 60.818 55.000 2.97 0.00 0.00 4.40
318 319 0.106918 AAAAGTCACCGGTTCCAGCA 60.107 50.000 2.97 0.00 0.00 4.41
319 320 1.029681 AAAAAGTCACCGGTTCCAGC 58.970 50.000 2.97 0.00 0.00 4.85
335 336 4.808364 CCCTTTCGCTGATTGAAACAAAAA 59.192 37.500 0.00 0.00 32.29 1.94
336 337 4.098654 TCCCTTTCGCTGATTGAAACAAAA 59.901 37.500 0.00 0.00 32.29 2.44
337 338 3.634448 TCCCTTTCGCTGATTGAAACAAA 59.366 39.130 0.00 0.00 32.29 2.83
338 339 3.218453 TCCCTTTCGCTGATTGAAACAA 58.782 40.909 0.00 0.00 32.29 2.83
339 340 2.857483 TCCCTTTCGCTGATTGAAACA 58.143 42.857 0.00 0.00 32.29 2.83
340 341 4.168760 CAATCCCTTTCGCTGATTGAAAC 58.831 43.478 5.72 0.00 45.13 2.78
341 342 3.367292 GCAATCCCTTTCGCTGATTGAAA 60.367 43.478 13.88 0.00 45.13 2.69
342 343 2.164219 GCAATCCCTTTCGCTGATTGAA 59.836 45.455 13.88 0.00 45.13 2.69
343 344 1.745087 GCAATCCCTTTCGCTGATTGA 59.255 47.619 13.88 0.00 45.13 2.57
344 345 1.532505 CGCAATCCCTTTCGCTGATTG 60.533 52.381 7.01 7.01 45.11 2.67
345 346 0.734889 CGCAATCCCTTTCGCTGATT 59.265 50.000 0.00 0.00 0.00 2.57
346 347 0.107703 TCGCAATCCCTTTCGCTGAT 60.108 50.000 0.00 0.00 0.00 2.90
347 348 0.740868 CTCGCAATCCCTTTCGCTGA 60.741 55.000 0.00 0.00 0.00 4.26
348 349 0.740868 TCTCGCAATCCCTTTCGCTG 60.741 55.000 0.00 0.00 0.00 5.18
349 350 0.036388 TTCTCGCAATCCCTTTCGCT 60.036 50.000 0.00 0.00 0.00 4.93
350 351 0.097150 GTTCTCGCAATCCCTTTCGC 59.903 55.000 0.00 0.00 0.00 4.70
351 352 0.727398 GGTTCTCGCAATCCCTTTCG 59.273 55.000 0.00 0.00 0.00 3.46
352 353 0.727398 CGGTTCTCGCAATCCCTTTC 59.273 55.000 0.00 0.00 0.00 2.62
353 354 0.676782 CCGGTTCTCGCAATCCCTTT 60.677 55.000 0.00 0.00 37.59 3.11
354 355 1.078426 CCGGTTCTCGCAATCCCTT 60.078 57.895 0.00 0.00 37.59 3.95
355 356 2.584608 CCGGTTCTCGCAATCCCT 59.415 61.111 0.00 0.00 37.59 4.20
356 357 3.202706 GCCGGTTCTCGCAATCCC 61.203 66.667 1.90 0.00 37.59 3.85
357 358 3.202706 GGCCGGTTCTCGCAATCC 61.203 66.667 1.90 0.00 37.59 3.01
358 359 1.582610 TTTGGCCGGTTCTCGCAATC 61.583 55.000 1.90 0.00 37.59 2.67
359 360 1.175983 TTTTGGCCGGTTCTCGCAAT 61.176 50.000 1.90 0.00 37.59 3.56
360 361 1.175983 ATTTTGGCCGGTTCTCGCAA 61.176 50.000 1.90 0.00 37.59 4.85
361 362 1.602323 ATTTTGGCCGGTTCTCGCA 60.602 52.632 1.90 0.00 37.59 5.10
362 363 1.154035 CATTTTGGCCGGTTCTCGC 60.154 57.895 1.90 0.00 37.59 5.03
363 364 1.154035 GCATTTTGGCCGGTTCTCG 60.154 57.895 1.90 0.00 38.88 4.04
364 365 0.603065 AAGCATTTTGGCCGGTTCTC 59.397 50.000 1.90 0.00 0.00 2.87
365 366 0.318120 CAAGCATTTTGGCCGGTTCT 59.682 50.000 1.90 0.00 0.00 3.01
366 367 0.316841 TCAAGCATTTTGGCCGGTTC 59.683 50.000 1.90 0.00 0.00 3.62
367 368 0.975887 ATCAAGCATTTTGGCCGGTT 59.024 45.000 1.90 0.00 0.00 4.44
368 369 0.247185 CATCAAGCATTTTGGCCGGT 59.753 50.000 1.90 0.00 0.00 5.28
369 370 0.247185 ACATCAAGCATTTTGGCCGG 59.753 50.000 0.00 0.00 0.00 6.13
370 371 1.727880 CAACATCAAGCATTTTGGCCG 59.272 47.619 0.00 0.00 0.00 6.13
371 372 2.078392 CCAACATCAAGCATTTTGGCC 58.922 47.619 0.00 0.00 35.88 5.36
372 373 2.078392 CCCAACATCAAGCATTTTGGC 58.922 47.619 0.00 0.00 40.01 4.52
373 374 3.405823 ACCCAACATCAAGCATTTTGG 57.594 42.857 0.00 0.00 40.74 3.28
374 375 3.499157 CCAACCCAACATCAAGCATTTTG 59.501 43.478 0.00 0.00 0.00 2.44
375 376 3.496515 CCCAACCCAACATCAAGCATTTT 60.497 43.478 0.00 0.00 0.00 1.82
376 377 2.038820 CCCAACCCAACATCAAGCATTT 59.961 45.455 0.00 0.00 0.00 2.32
377 378 1.624813 CCCAACCCAACATCAAGCATT 59.375 47.619 0.00 0.00 0.00 3.56
378 379 1.269012 CCCAACCCAACATCAAGCAT 58.731 50.000 0.00 0.00 0.00 3.79
379 380 0.831288 CCCCAACCCAACATCAAGCA 60.831 55.000 0.00 0.00 0.00 3.91
380 381 0.541764 TCCCCAACCCAACATCAAGC 60.542 55.000 0.00 0.00 0.00 4.01
381 382 1.618343 GTTCCCCAACCCAACATCAAG 59.382 52.381 0.00 0.00 0.00 3.02
382 383 1.710816 GTTCCCCAACCCAACATCAA 58.289 50.000 0.00 0.00 0.00 2.57
383 384 0.538516 CGTTCCCCAACCCAACATCA 60.539 55.000 0.00 0.00 0.00 3.07
384 385 0.250989 TCGTTCCCCAACCCAACATC 60.251 55.000 0.00 0.00 0.00 3.06
385 386 0.538746 GTCGTTCCCCAACCCAACAT 60.539 55.000 0.00 0.00 0.00 2.71
386 387 1.152922 GTCGTTCCCCAACCCAACA 60.153 57.895 0.00 0.00 0.00 3.33
387 388 2.255881 CGTCGTTCCCCAACCCAAC 61.256 63.158 0.00 0.00 0.00 3.77
388 389 2.111460 CGTCGTTCCCCAACCCAA 59.889 61.111 0.00 0.00 0.00 4.12
389 390 3.943691 CCGTCGTTCCCCAACCCA 61.944 66.667 0.00 0.00 0.00 4.51
401 402 4.735132 TTTCTCAGCCCGCCGTCG 62.735 66.667 0.00 0.00 0.00 5.12
402 403 1.964373 TTTTTCTCAGCCCGCCGTC 60.964 57.895 0.00 0.00 0.00 4.79
403 404 2.112297 TTTTTCTCAGCCCGCCGT 59.888 55.556 0.00 0.00 0.00 5.68
418 419 2.027460 CGCCGGTTGCAGCTTTTT 59.973 55.556 1.90 0.00 41.33 1.94
419 420 2.291457 AAACGCCGGTTGCAGCTTTT 62.291 50.000 1.90 0.00 41.33 2.27
420 421 2.781158 AAACGCCGGTTGCAGCTTT 61.781 52.632 1.90 0.00 41.33 3.51
421 422 3.216292 AAACGCCGGTTGCAGCTT 61.216 55.556 1.90 0.00 41.33 3.74
422 423 3.964875 CAAACGCCGGTTGCAGCT 61.965 61.111 0.23 0.00 41.33 4.24
423 424 4.999939 CCAAACGCCGGTTGCAGC 63.000 66.667 9.89 0.00 41.33 5.25
424 425 4.341502 CCCAAACGCCGGTTGCAG 62.342 66.667 9.89 0.00 41.33 4.41
426 427 3.906879 AACCCAAACGCCGGTTGC 61.907 61.111 9.89 0.00 40.88 4.17
428 429 3.220658 CCAACCCAAACGCCGGTT 61.221 61.111 1.90 0.00 43.24 4.44
429 430 4.509580 ACCAACCCAAACGCCGGT 62.510 61.111 1.90 0.00 0.00 5.28
430 431 3.220658 AACCAACCCAAACGCCGG 61.221 61.111 0.00 0.00 0.00 6.13
431 432 2.026879 CAACCAACCCAAACGCCG 59.973 61.111 0.00 0.00 0.00 6.46
432 433 2.279851 GCAACCAACCCAAACGCC 60.280 61.111 0.00 0.00 0.00 5.68
433 434 2.279851 GGCAACCAACCCAAACGC 60.280 61.111 0.00 0.00 0.00 4.84
434 435 2.026879 CGGCAACCAACCCAAACG 59.973 61.111 0.00 0.00 0.00 3.60
435 436 2.279851 GCGGCAACCAACCCAAAC 60.280 61.111 0.00 0.00 0.00 2.93
436 437 3.905678 CGCGGCAACCAACCCAAA 61.906 61.111 0.00 0.00 0.00 3.28
437 438 4.877619 TCGCGGCAACCAACCCAA 62.878 61.111 6.13 0.00 0.00 4.12
438 439 4.877619 TTCGCGGCAACCAACCCA 62.878 61.111 6.13 0.00 0.00 4.51
439 440 4.337060 GTTCGCGGCAACCAACCC 62.337 66.667 6.13 0.00 0.00 4.11
440 441 4.337060 GGTTCGCGGCAACCAACC 62.337 66.667 21.20 15.45 44.79 3.77
445 446 4.072088 CTCGTGGTTCGCGGCAAC 62.072 66.667 6.13 3.83 37.97 4.17
465 466 4.434938 TCGTCGTTCTCGTCGCCG 62.435 66.667 0.00 0.00 44.86 6.46
466 467 2.868787 GTCGTCGTTCTCGTCGCC 60.869 66.667 0.00 0.00 44.86 5.54
467 468 2.845861 ATGGTCGTCGTTCTCGTCGC 62.846 60.000 0.00 0.00 44.86 5.19
468 469 1.126421 CATGGTCGTCGTTCTCGTCG 61.126 60.000 0.00 1.62 46.06 5.12
469 470 0.109873 ACATGGTCGTCGTTCTCGTC 60.110 55.000 0.00 0.00 38.33 4.20
470 471 1.135859 GTACATGGTCGTCGTTCTCGT 60.136 52.381 0.00 0.00 38.33 4.18
471 472 1.531912 GTACATGGTCGTCGTTCTCG 58.468 55.000 0.00 0.00 38.55 4.04
472 473 1.200716 TGGTACATGGTCGTCGTTCTC 59.799 52.381 0.00 0.00 0.00 2.87
473 474 1.250328 TGGTACATGGTCGTCGTTCT 58.750 50.000 0.00 0.00 0.00 3.01
474 475 3.798646 TGGTACATGGTCGTCGTTC 57.201 52.632 0.00 0.00 0.00 3.95
487 488 2.203070 CCCGCTGCTCCATGGTAC 60.203 66.667 12.58 5.70 0.00 3.34
488 489 2.687200 ACCCGCTGCTCCATGGTA 60.687 61.111 12.58 0.00 0.00 3.25
489 490 4.415150 CACCCGCTGCTCCATGGT 62.415 66.667 12.58 0.00 0.00 3.55
548 549 4.521062 ACAGCTCCCGCATCTCGC 62.521 66.667 0.00 0.00 39.10 5.03
549 550 2.584418 CACAGCTCCCGCATCTCG 60.584 66.667 0.00 0.00 39.10 4.04
550 551 2.894387 GCACAGCTCCCGCATCTC 60.894 66.667 0.00 0.00 39.10 2.75
551 552 4.827087 CGCACAGCTCCCGCATCT 62.827 66.667 0.00 0.00 39.10 2.90
552 553 4.819761 TCGCACAGCTCCCGCATC 62.820 66.667 0.00 0.00 39.10 3.91
553 554 4.827087 CTCGCACAGCTCCCGCAT 62.827 66.667 0.00 0.00 39.10 4.73
556 557 3.997064 CTTCCTCGCACAGCTCCCG 62.997 68.421 0.00 0.00 0.00 5.14
557 558 2.125350 CTTCCTCGCACAGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
558 559 0.739112 CTTCTTCCTCGCACAGCTCC 60.739 60.000 0.00 0.00 0.00 4.70
559 560 0.244994 TCTTCTTCCTCGCACAGCTC 59.755 55.000 0.00 0.00 0.00 4.09
560 561 0.681733 TTCTTCTTCCTCGCACAGCT 59.318 50.000 0.00 0.00 0.00 4.24
561 562 1.195674 GTTTCTTCTTCCTCGCACAGC 59.804 52.381 0.00 0.00 0.00 4.40
562 563 2.734079 GAGTTTCTTCTTCCTCGCACAG 59.266 50.000 0.00 0.00 0.00 3.66
563 564 2.755650 GAGTTTCTTCTTCCTCGCACA 58.244 47.619 0.00 0.00 0.00 4.57
564 565 1.721926 CGAGTTTCTTCTTCCTCGCAC 59.278 52.381 0.00 0.00 40.12 5.34
565 566 1.336887 CCGAGTTTCTTCTTCCTCGCA 60.337 52.381 0.00 0.00 44.00 5.10
566 567 1.067776 TCCGAGTTTCTTCTTCCTCGC 60.068 52.381 0.00 0.00 44.00 5.03
567 568 2.597520 GTCCGAGTTTCTTCTTCCTCG 58.402 52.381 0.00 0.00 44.72 4.63
568 569 2.671632 CGGTCCGAGTTTCTTCTTCCTC 60.672 54.545 4.91 0.00 0.00 3.71
569 570 1.272769 CGGTCCGAGTTTCTTCTTCCT 59.727 52.381 4.91 0.00 0.00 3.36
570 571 1.271656 TCGGTCCGAGTTTCTTCTTCC 59.728 52.381 10.71 0.00 0.00 3.46
571 572 2.719426 TCGGTCCGAGTTTCTTCTTC 57.281 50.000 10.71 0.00 0.00 2.87
572 573 2.547430 GGTTCGGTCCGAGTTTCTTCTT 60.547 50.000 14.79 0.00 37.14 2.52
573 574 1.000618 GGTTCGGTCCGAGTTTCTTCT 59.999 52.381 14.79 0.00 37.14 2.85
574 575 1.426423 GGTTCGGTCCGAGTTTCTTC 58.574 55.000 14.79 1.02 37.14 2.87
575 576 3.601277 GGTTCGGTCCGAGTTTCTT 57.399 52.632 14.79 0.00 37.14 2.52
584 585 1.150827 CTGGTAAAACGGTTCGGTCC 58.849 55.000 0.00 0.00 0.00 4.46
585 586 2.153366 TCTGGTAAAACGGTTCGGTC 57.847 50.000 0.00 0.00 0.00 4.79
586 587 2.037511 TGATCTGGTAAAACGGTTCGGT 59.962 45.455 0.00 0.00 0.00 4.69
587 588 2.690786 TGATCTGGTAAAACGGTTCGG 58.309 47.619 0.00 0.00 0.00 4.30
588 589 4.460505 GTTTGATCTGGTAAAACGGTTCG 58.539 43.478 0.00 0.00 0.00 3.95
594 595 3.816523 TGGGTCGTTTGATCTGGTAAAAC 59.183 43.478 0.00 0.00 0.00 2.43
595 596 3.816523 GTGGGTCGTTTGATCTGGTAAAA 59.183 43.478 0.00 0.00 0.00 1.52
596 597 3.181453 TGTGGGTCGTTTGATCTGGTAAA 60.181 43.478 0.00 0.00 0.00 2.01
597 598 2.369203 TGTGGGTCGTTTGATCTGGTAA 59.631 45.455 0.00 0.00 0.00 2.85
598 599 1.972075 TGTGGGTCGTTTGATCTGGTA 59.028 47.619 0.00 0.00 0.00 3.25
599 600 0.762418 TGTGGGTCGTTTGATCTGGT 59.238 50.000 0.00 0.00 0.00 4.00
600 601 1.156736 GTGTGGGTCGTTTGATCTGG 58.843 55.000 0.00 0.00 0.00 3.86
601 602 0.790207 CGTGTGGGTCGTTTGATCTG 59.210 55.000 0.00 0.00 0.00 2.90
602 603 0.320421 CCGTGTGGGTCGTTTGATCT 60.320 55.000 0.00 0.00 0.00 2.75
603 604 2.159181 CCGTGTGGGTCGTTTGATC 58.841 57.895 0.00 0.00 0.00 2.92
604 605 4.371975 CCGTGTGGGTCGTTTGAT 57.628 55.556 0.00 0.00 0.00 2.57
622 623 4.194720 AGTCCGTCGGATGCGAGC 62.195 66.667 18.75 2.97 32.73 5.03
623 624 2.278206 CAGTCCGTCGGATGCGAG 60.278 66.667 18.75 4.30 32.73 5.03
624 625 4.492160 GCAGTCCGTCGGATGCGA 62.492 66.667 23.55 4.75 32.73 5.10
654 655 4.886925 CAATGCTAACGCGCCGGC 62.887 66.667 19.07 19.07 39.65 6.13
655 656 4.236416 CCAATGCTAACGCGCCGG 62.236 66.667 5.73 0.00 39.65 6.13
656 657 4.886925 GCCAATGCTAACGCGCCG 62.887 66.667 5.73 0.00 39.65 6.46
657 658 4.552745 GGCCAATGCTAACGCGCC 62.553 66.667 5.73 0.00 39.65 6.53
658 659 2.177580 TAGGCCAATGCTAACGCGC 61.178 57.895 5.73 0.00 39.65 6.86
659 660 0.810031 AGTAGGCCAATGCTAACGCG 60.810 55.000 5.01 3.53 39.65 6.01
660 661 2.234300 TAGTAGGCCAATGCTAACGC 57.766 50.000 5.01 0.00 37.74 4.84
661 662 5.554822 TTTTTAGTAGGCCAATGCTAACG 57.445 39.130 5.01 0.00 37.74 3.18
662 663 8.221965 ACTATTTTTAGTAGGCCAATGCTAAC 57.778 34.615 5.01 0.00 37.74 2.34
663 664 9.555727 CTACTATTTTTAGTAGGCCAATGCTAA 57.444 33.333 5.01 1.46 43.46 3.09
682 683 3.704566 TGGCGAATGACACTCCTACTATT 59.295 43.478 0.00 0.00 0.00 1.73
691 692 2.948979 TGTCTTTTTGGCGAATGACACT 59.051 40.909 15.44 0.00 38.20 3.55
766 774 1.530183 GCTGGGAATGATGGGCTCC 60.530 63.158 0.00 0.00 0.00 4.70
830 838 1.668294 CTCGGTGCTTCTGGTCACT 59.332 57.895 0.00 0.00 33.91 3.41
937 947 1.215382 GGGCGAAGTGGAATTTGGC 59.785 57.895 0.00 0.00 36.57 4.52
1188 1198 1.591059 CTCGATGCGCTCTTGGAGG 60.591 63.158 9.73 0.00 0.00 4.30
1355 1365 5.528320 ACCAAATTGCAAGATTTTGAACTGG 59.472 36.000 20.41 10.21 36.36 4.00
1385 1395 0.899717 GTGGAGCAGGCAATGGGAAA 60.900 55.000 0.00 0.00 0.00 3.13
1391 1401 2.742428 ATATGTGTGGAGCAGGCAAT 57.258 45.000 0.00 0.00 0.00 3.56
1395 1405 4.879197 TCAGATATATGTGTGGAGCAGG 57.121 45.455 9.50 0.00 0.00 4.85
1396 1406 8.837788 TTTATTCAGATATATGTGTGGAGCAG 57.162 34.615 9.50 0.00 0.00 4.24
1406 1416 9.029243 GGCGAGATGTCTTTATTCAGATATATG 57.971 37.037 0.00 0.00 0.00 1.78
1408 1418 8.246871 CAGGCGAGATGTCTTTATTCAGATATA 58.753 37.037 0.00 0.00 0.00 0.86
1409 1419 7.095910 CAGGCGAGATGTCTTTATTCAGATAT 58.904 38.462 0.00 0.00 0.00 1.63
1410 1420 6.040955 ACAGGCGAGATGTCTTTATTCAGATA 59.959 38.462 0.00 0.00 0.00 1.98
1411 1421 5.163364 ACAGGCGAGATGTCTTTATTCAGAT 60.163 40.000 0.00 0.00 0.00 2.90
1413 1423 4.269603 CACAGGCGAGATGTCTTTATTCAG 59.730 45.833 0.00 0.00 0.00 3.02
1415 1425 3.557595 CCACAGGCGAGATGTCTTTATTC 59.442 47.826 0.00 0.00 0.00 1.75
1436 1451 7.172361 GGAGATATCATGTGAAACTTAGAAGCC 59.828 40.741 5.32 0.00 38.04 4.35
1473 1488 7.798596 ATTCTCTATTTGCAGATCGAAATGT 57.201 32.000 0.00 0.00 0.00 2.71
1487 1502 8.757982 AGTGGAATTGTGCATATTCTCTATTT 57.242 30.769 18.33 3.43 33.51 1.40
1515 1553 6.292168 CGGTGTGTGTAAAAGTAGAGAAACTG 60.292 42.308 0.00 0.00 0.00 3.16
1523 1561 3.631144 TCGACGGTGTGTGTAAAAGTAG 58.369 45.455 0.00 0.00 0.00 2.57
1602 1640 7.684317 TCTGTAAATCACCCATAGGATACAA 57.316 36.000 0.00 0.00 41.41 2.41
1646 1684 8.882736 TGTTAGCAGTATCTGTAAATCATGTTG 58.117 33.333 0.00 0.00 33.43 3.33
1682 1721 2.117156 CATTTGCTCTCCCGCCCTG 61.117 63.158 0.00 0.00 0.00 4.45
1771 1810 1.384409 GAACACGGTCGTTACACATCG 59.616 52.381 0.00 0.00 0.00 3.84
1930 1969 2.322355 ATACTCCTGCTGACATGTGC 57.678 50.000 1.15 1.24 0.00 4.57
1957 1996 1.899814 TCACGTCCTTTGCCTATCTGT 59.100 47.619 0.00 0.00 0.00 3.41
1973 2012 2.797156 CCTCGGATCATTTAAGCTCACG 59.203 50.000 0.00 0.00 0.00 4.35
1975 2014 4.753516 TTCCTCGGATCATTTAAGCTCA 57.246 40.909 0.00 0.00 0.00 4.26
1978 2017 5.296780 TGTCAATTCCTCGGATCATTTAAGC 59.703 40.000 0.00 0.00 0.00 3.09
1980 2019 7.880160 ATTGTCAATTCCTCGGATCATTTAA 57.120 32.000 0.00 0.00 0.00 1.52
1981 2020 7.201812 CCAATTGTCAATTCCTCGGATCATTTA 60.202 37.037 7.87 0.00 0.00 1.40
1993 2032 8.496707 AGAATATTTTGCCAATTGTCAATTCC 57.503 30.769 7.87 3.63 0.00 3.01
2004 2043 8.113173 ACGGTAAAACTAGAATATTTTGCCAA 57.887 30.769 17.55 0.00 45.56 4.52
2007 2046 9.836076 AAGAACGGTAAAACTAGAATATTTTGC 57.164 29.630 0.00 0.00 31.82 3.68
2016 2055 8.370182 AGATACCAAAAGAACGGTAAAACTAGA 58.630 33.333 0.00 0.00 41.03 2.43
2136 2175 2.089349 GTCTTGTCGTGAGCCGCTC 61.089 63.158 13.81 13.81 36.19 5.03
2139 2178 1.299850 TGTGTCTTGTCGTGAGCCG 60.300 57.895 0.00 0.00 38.13 5.52
2146 2185 2.235016 AACCGCGTGTGTCTTGTCG 61.235 57.895 4.92 0.00 0.00 4.35
2158 2197 3.064682 TGATTTTCCACATATCAACCGCG 59.935 43.478 0.00 0.00 0.00 6.46
2161 2200 7.396540 ACTTCTGATTTTCCACATATCAACC 57.603 36.000 0.00 0.00 0.00 3.77
2198 2237 7.972301 ACATATGAAAATCCAGTTTGGGAAAA 58.028 30.769 10.38 0.00 41.12 2.29
2233 2272 4.832248 TCTCTGTTCGATACATGGCTTTT 58.168 39.130 0.00 0.00 35.85 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.