>input_sequence_83169
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-------------------------------------------------ATGGAGGGCGACGAGATCTTTGCAAGCCTAG
ACTCGCTCTGGTTCCACTCCAGCGTCCTCCACCGGCGGCCGCGCTTCAAGCAGCACTCGGAAGAGCTGAAGCCGCCCAGG
AATCAAGATCAACATCCCAAATGCGTCGACGACGAGGTGACGCTGGGAGCGAGAAGAGCGGATCCGGGAAGCAGGGCCCT
CCAAGAGCGCATCGAGACATGGCAGGAGGAGCAGTGGCGGCAGCAGACGCTCGTCGTTGCGGCACCGCCACGGTGCTCGC
CCGTCAGCGATGGTGTCGCCATGAAGGCTCATCTCAGGTCGTGGGCTCATGCCGTTGCTTGCTCGGTCAGATGA------
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>chr3D_1_TraesCS3D01G282000
ACATTGCTACAATCGACACCAGCCGACGTTGTAACCGATAGTCTTTTTTGCTACAACCGGCAGGAGCAGCTGTCGGCGGC
AATCTTGTTTGCTGGAACCAGCGACTGGGATTGCTACATCCACGGTGGTGAAGTAGTTGCTAAGGTGCTGGAACGGGCGA
ACTATTCTGCTGCAATGGGCGAGAAGGTTTGCTGGAACAGACTATCTCTTTTGCGATAACCGGTGGCAACATTTTTTGCT
TTAGCTGGAACCGACACGTGGATTTGCTGAACCAGGGACCGGGATTGCTGCATCCAAGGTGGTGAGCAGTCGCCCAGGTG
CTGGAACCGGTGACTTTTTTGTTTCAATCAGCGAAAGGGATTGCGAGAACCGGCCAAAATGCTTGATGTTGGGTTGGGGA
ACGACGGCGGGCTGAGAAAAAAAGCTGCAACCGGCGTTTGGGTTGGTTGCCGCGAACCACGAGCGCGGCGACGAGAACGA
CGACCATGTACCATGGAGCAGCGGGTGGCGCAGTGCTCCGACCGGGGGCGACGGGAGGCGCGGTCGGCGCGAGATGCGGG
AGCTGTGCGAGGAAGAAGAAACTCGGACCGAACCGTTTTACCAGATCAAACGACCCACACGGGCTCGCATCCGACGGACT
GCGCGCGACCGGCGGCCGGCGCGTTAGCATTGGCCTACTAAAAATAGTAGGAGTGTCATTCGCCAAAAAGACAAAAAAGC
AGGTGTGGTCGGCAGCTGAAAGGGGTCCAGTA-------GCCAGTGGCTCGTCGGAGCCCATCATTCCCAGCGGAAAGCA
AGCTGACCTGTGCAAAAGGTAGACTTTTCGGTCATTCAGTGACCAGAAGCACCGAGCCGTTAGACCCGGCCGGACGA--A
GTAAAAGCTCTCCCCCACTCCAAACTTCAGACATGGCCGAACACCAAGCCCCAAAATCCCGTCGTCGCCAAATTCCACTT
CGCCCCGGCCGCCTGTAGCAATAGCAACAAGAAGCTACTCCTAGAAGAAATGGAGGGCGACGAGATCTTTGCAAGCCTAG
ACTCGCTCTGGTTCCACTCCAGCGTCCTCCACCGGCGGCCGCGCTTCAAGCAGCACTCGGAAGAGCTGAAGCCGCCCAGG
AATCAAGATCAACATCCCAAATGCGTCGACGACGAGGTGACGCTGGGAGCGAGAAGAGCGGATCCGGGAAGCAGGGCCCT
CCAAGAGCGCATCGAGACATGGCAGGAGGAGCAGTGGCGGCAGCAGACGCTCGTCGTTGCGGCACCGCCACGGTGCTCGC
CCGTCAGCGATGGTGTCGCCATGAAGGCTCATCTCAGGTCGTGGGCTCATGCCGTTGCTTGCTCGGTCAGATGAAGGCCC
TCCACCAGTTCAAAATCTTGCAATTTGGTACGATTTTCCCATTGCCTGCTCCACACATATATCTG-----AATAAAGACA
TCTCGCCTGTGGCTTCTAAGTTTCACATGATATCTCCTCTGAGCTGCACATTTCGATCTGCAAATAG-------------
----------AGAATATGCACAATTCCACTTGCAGTTTCTCTACTTTTACACACACCGTCGAGGTTGTGGGAGTAGCCAG
GGGCCACTGTCTATTGTACACTTGTTTTACATCTGGAATTTGTATCCTATGGGTGATTTACAGATCGGCATCAACCAATT
TTACAACATGATTTACAGATACTGCTAACACG-TCGAATCCAGGGCGGGAGAGCAAATGCTATGCAGCTCTCCTCAAATA
ATTAGACTATACATGGAGGGTTAACTAACGCTTCATAAAACCACACATTCGATGTGTAACGACCGTGTTCTCTTCTCACT
CCTGGTTGGACGCTGCCTCTGGAAGTTTGAATGTAGGAGGCCTGTCTGCACCTTTCCTCGAGTATTCTCGCCACCTCCTT
GCCGCCGCAGCCGCTCGCTTCACTCTCTCCTTTGTGTCCTCTTCTGTTGCACATGTCAGCAGGAGTATTAGAACAACAGA
TAGGCAAAGGACGTGAGCTTAAATGATCCGAGGAATTGACAATTGGCAAAATATTCTAGTTTTACCGTTCTTTTGGTATC
TTGTTGGTGACCCCCATATATCACTCCATGAACTGCCCTTGTTAGCATCATCTTGGCTCATCCGCATCCTCACCTTATTC
TGCAAGACATTACGGAGCGGCTCACGACAAGACACACGCGGTTGATATGTGGAAAATCAGAAGTTTATGATCCTAATTTT
CCCAAACTGGATTTTCATATGTACATATAAAAAAAGCCATGTATCGAACAGAGAATTATACCAAGACTTGTGCTTGTCTT
TTCTCCCAGCGCGTACTTGCCTGACAGCAGGAAATATAAC-AGAACATGTTAAGACCTACATAA
>chr3A_674
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---------------------------------CCTACTAAATATAGTAGGCGTGTCATTCGCCATAAAGACA-AAAACT
AGGTGTGGTCGGCAGCTGAAAAGGGTCCAGC-------GGCCAGTGGCTCGTCCGAGCCCATCATCCCCAGCGGAAAGCA
AGCTGACCTGTGCAAAAGGTAGACTTTTCGGTCATCAC-TGACCAGAAGCACCGAGCCGTTACACCCGGCCGGACGA--A
GTTAAAGCTCTCCCCCACTCCAAACTTCAGACATGGCCAAACACCAAGCCCCAAAATCCCGTCGTCTCCAAATTCCACTT
CGCCCCGGCCGCCTGTAGCAATAGCAACAAGAAGCTACTCCTAGAAGAAATGGAGGGCGACGAGATCTTTGCAAGCCTAG
ACTCGCTCTGGTTCCACTCCAGCGTCCTTCACCGGCGGCCGCGCTTCAAGCAGCACTCGGAAGAGCTGAAGCCGCCCAGG
AATCAAGATCAGCATCCCAAATGCGTCGACGGCGAGGTGACGCTGGGAGCGAGAAGAGCGGATCCGGGAAGCAGGGCGCT
TCAAGAGCGCATCGAGACATGGCAGGAGGAGCAGTGGCGGCG---GACGCTCGTCGTCGCGGCACCGCCACGGTGCTCGC
CCGTCAGCGATGGTGTGGCCATGAAGGCTCATCTCAGGTCGTGGGCTCATGCCGTTGCTTGCTCCGTCAGATGAAGGCCC
TCCATCAGTTCAAAATCTTGCAATTTGGTACGATGTTCCCGTTGTTTGCTTCACATACTAGTATATCTGAAATAAAGACA
TCTCGCCTGTAGCTTCTAAGTTTCACATGATATCTCCTCTGAGCTGCGCATTTCAATCTGCCAATTG-------------
----------AGAGTCTGCACAATTCCACTTGGAGTTTCTTTACGTTTGCACACACCGACGAGGTTGTGGGAGGAGCCAG
GGGGCACTGCTTATTGTACACTTGTTTTACATCTGGAATCTGCATCCTATGGGTGATTTACAGATCGGCATCAGCCAGCT
CTAGAACATGATTTACAGACATTGCTAACACG-TCGAATCGAGGGCGGGAGAGCAAATGCTATGCAGCTCTCCTCAAATA
ATTAGGCTATACATGGAGGGTTAACTAACGCTTCATAAAACCACACATTTGATGTGTAACGACCGTGTTCTCTTCTCACT
CCTGGTTGGACGCTGCCTCTGGAAGTTTGAATGTTGGAGGCCTGTCTGCACCTTTCCTCGAGTATTCTCGCCACCTCCTT
GCCGCCGCAGCCGCTCGCTTCACTCTCTCCTTTGTGTCCTCATCTGTTTCACATGTCAGCAGGAGTATTAGAACA-CAGA
TAGGCAAAGGATGGGATCCCAAATGATCCGACGAATTG---------AAAACATGCTAGTTTTACCATTCTTTTGGTATC
TTGTTGGTGACCCCCATATATCACTCCATGAACTGCCCTTGTTAGCATCATCTTGGCTCATCCGCATCCGCACCTTATTC
TGCAGGACATTACGCAGAGGTTCAGCACAAGACACATGCAGTTGATATGTGGAAAATCAGAAGTTTATGATCCT------
CCTAAACTGGATTTTCATACGCATATATAAAGAAAGCCATGTATGGAACAGAGAATTATACCAAGACTTGTGCTTGTCTT
TTCTCCCAGCGCGTACTTGCCTGACAGCAGGAAAGATAAATAGAACATGTTAAGACCTACATAA
>chr3B_690
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-------------------------------------------------GGCGTGTCATTCGCCAAAAAGAC-AAAAAGC
AGGTGTGGTCGGCAGCTGAAAGGGGTCCAGTGGCCAGTGGCCAGTGGCTCGTCCGAGCCCATCATTCCCAGCGGAAAGCA
AGCTGACCTGTGCAAAAGGTGGACTTTTCGGTCATTCGGTGACCAGAAGCACCGAGCCGTTACACCCGGCCGGACGAGGA
GTAAAAGCTCTCCCCCATTCCAAACTTCAGACATGGCCGAACACCAAGCCCCAAAATCCC--------CAAATTCCACTT
CGCCCCAGTCGCCTGTAGTAATAGCAACAAGAAGCTAGC---AGAAGAAATGGAGGGCGACGAGATCTTTGCAAGCCTAG
ACTCGCTCTGGTTCCACTCCAGCGTCCTCCACCGGCGGCCGCGCTTCAAGCAGTGCTCCGAAGAGTTGAAGCCGCCCAGG
AAGCAGGATCAACATCCCAAATGCGTCGACGACGAGGTGACGCTGGGGGCGAGAAGAGCGGATCCAGGAAGGAGGGCGCT
CCAAGAGCGCATCGAGACATGGCAGGAGGAGCAGTGGCGGCAGCCGACGCTCGTCATTGCGGCACCGCCACGGTGCTCGC
CCGTCGGCGATGGTGTCGCCATGAAGGCTCATCTCAGGTCGTGGGCTCATGCTGTTGCCTGCTCGGTCAGATAAAGGCTC
TGCATCTGTTCAAAATCTTGCAATTTGGTACGATGTTCCCGTTGTTTGCTTCGCATACTAGTATATCTGAAATAAAGAC-
---------TAGCTTCTAAGTTTCACATGATATCTCCTATGAGCTGCGCATTTCATTGTGCGGGCATTTGATGATAACGA
GCTGCGCAAAAGAAAATGCACATTTCCACTTGAA----------TTTTACACACACCGTCGAGGTTGTGGGAGTAGCCAG
GGGCCACTGTCTATTGTACACATGTTTTACATCTGGAATCTGTATCCTATGGGTGATTTACAGATCGGCATCAGCCAACT
CTAGAACATGATTTACAGATACTGCTAACACGATCGAATCGAGGGCGGGAGAGCAAATGCTATGCAGCTCTCCTCAAATA
ATTAGACTATACATGGAGGGTTAACTAACGCTTCATAAAACCACACATTTTATGTGTAACGACCATGTTCTCTTCTCACT
CCTGGTTGGACGCTACCTCTGGAAGTTTGAATGTAGGAGGCTTGTCTGCACCTTTCCTCGAGTATTCTCGCCATCTCCGT
GCGGCCGCGGCCGCTCGCTTCATTCTCTCCTTTGTGTCCTCTTCTGTTTCACATGTAACCAGGAGTATTAGAACG-CAGA
TAGGCAAATGATGGGATCCCAAATGATCTGACGAACTGACAAATGCCAAAATATGCTAGTTTTACCGTTCTTTTGGTATC
TTGTTGGTGACCCCCATATATCACTCCATGAACTGCCCTTGTTAGAATCATCTTGGCTCATCCGCATCCTGACCTTATTC
TGCAAGACATTACGCAGAGGCTCATGACAAGACACATGCAGTTGATATGTCAAAAACCAGAAGTTTATGATCCTAACTTT
CCTAAACTGGA---------GTACATATAAAGAAAGCCATGTATCGAAGAGAGAATTATACCAAGACTTTTGCTTGTCTT
TTCTCCCAGCGCGTACTTGCCTGACAGCAGGAAAGATAAC-AGAACATGTTAAGACCTACAT--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--------S----------------------------
-------------------------------S---------------------S--------------------------
-------------------------------------S------------------------S-----------------
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--------------------------------------------S-----------------------------------
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----S-----------------------------S-----S---SS----S----S-SSSS-S-S---------------
----------S------------------------------------S------S------S------------------
--------------------------------S-------S---------------------------------------
---------------------------------------S---------------------------------S----S-
S--S------------------------------------S---------------------------------------
-------------------------------------------------S------------------------------
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------------------------------------------------S--------------------------S----
-----------S-S--S-SS-----------S----------S--S--------S-------------------------
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--------------S--S------S-----------S--S------------------------------------S---
--S----------------S-----------S------------------------------------------------
----------------------------------S-----------------------------
>forward_369
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-----------------------------AGCGAAAGGGATTGCGAGAA-------------------------------
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>reverse_1395
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----------------------------------TTTCCCATTGCCTGCTCCAC--------------------------
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