Multiple sequence alignment - TraesCS3D01G281800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G281800 chr3D 100.000 3884 0 0 1 3884 389914665 389910782 0.000000e+00 7173.0
1 TraesCS3D01G281800 chr3D 74.948 479 88 19 284 738 416208075 416208545 1.420000e-44 191.0
2 TraesCS3D01G281800 chr3B 92.166 2489 106 32 865 3287 507277497 507275032 0.000000e+00 3434.0
3 TraesCS3D01G281800 chr3B 96.074 484 17 2 3241 3724 507275034 507274553 0.000000e+00 787.0
4 TraesCS3D01G281800 chr3A 93.053 2044 89 24 865 2860 510599117 510597079 0.000000e+00 2939.0
5 TraesCS3D01G281800 chr3A 94.007 901 30 2 3007 3884 510596774 510595875 0.000000e+00 1343.0
6 TraesCS3D01G281800 chr3A 90.929 893 48 4 7 867 510600073 510599182 0.000000e+00 1170.0
7 TraesCS3D01G281800 chr3A 92.053 151 6 2 2866 3010 510597046 510596896 1.410000e-49 207.0
8 TraesCS3D01G281800 chr6A 93.097 536 24 6 2337 2860 74502011 74501477 0.000000e+00 773.0
9 TraesCS3D01G281800 chr6A 93.514 185 7 2 2864 3044 74501446 74501263 1.780000e-68 270.0
10 TraesCS3D01G281800 chr2A 75.909 440 93 7 220 647 491571670 491571232 3.040000e-51 213.0
11 TraesCS3D01G281800 chr2A 87.395 119 9 4 3723 3835 657517870 657517752 8.760000e-27 132.0
12 TraesCS3D01G281800 chr4D 73.438 576 104 30 13 557 465746275 465745718 1.860000e-38 171.0
13 TraesCS3D01G281800 chr7A 86.400 125 14 3 3728 3850 532464179 532464056 2.430000e-27 134.0
14 TraesCS3D01G281800 chr6B 85.827 127 15 2 3723 3848 8029114 8028990 8.760000e-27 132.0
15 TraesCS3D01G281800 chr5D 86.667 120 15 1 3728 3847 443649257 443649375 8.760000e-27 132.0
16 TraesCS3D01G281800 chr2D 77.419 217 41 4 237 450 365024822 365024611 5.270000e-24 122.0
17 TraesCS3D01G281800 chr2B 85.039 127 12 4 3728 3847 572791181 572791055 5.270000e-24 122.0
18 TraesCS3D01G281800 chr2B 73.000 200 43 7 29 218 362247115 362247313 4.190000e-05 60.2
19 TraesCS3D01G281800 chr1B 85.841 113 16 0 3728 3840 525502142 525502030 1.900000e-23 121.0
20 TraesCS3D01G281800 chr1B 81.739 115 19 2 630 744 615113659 615113547 1.150000e-15 95.3
21 TraesCS3D01G281800 chr1A 84.000 125 17 3 3728 3850 537892446 537892323 2.450000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G281800 chr3D 389910782 389914665 3883 True 7173.00 7173 100.0000 1 3884 1 chr3D.!!$R1 3883
1 TraesCS3D01G281800 chr3B 507274553 507277497 2944 True 2110.50 3434 94.1200 865 3724 2 chr3B.!!$R1 2859
2 TraesCS3D01G281800 chr3A 510595875 510600073 4198 True 1414.75 2939 92.5105 7 3884 4 chr3A.!!$R1 3877
3 TraesCS3D01G281800 chr6A 74501263 74502011 748 True 521.50 773 93.3055 2337 3044 2 chr6A.!!$R1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 387 0.031043 TCTTACCACGGTCACACACG 59.969 55.000 0.00 0.0 0.00 4.49 F
852 885 0.034059 AGTTGGTCGAGCTTCCACAG 59.966 55.000 16.64 0.0 33.12 3.66 F
867 967 0.179150 CACAGGTCTAGTCGAGCAGC 60.179 60.000 0.00 0.0 42.56 5.25 F
895 995 0.323725 GCTCATCTTCCTTTGCCCCA 60.324 55.000 0.00 0.0 0.00 4.96 F
975 1076 1.001633 GACTCGGAGCCACAAAACCTA 59.998 52.381 4.58 0.0 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2335 2474 1.167851 CGAGCAGGCAAAGGAATCAA 58.832 50.000 0.0 0.0 0.00 2.57 R
2490 2630 4.625311 CGATCTTTTGTTAAAATGCACCCC 59.375 41.667 0.0 0.0 0.00 4.95 R
2770 2911 5.359576 TGCACTAATGTCTTTGTTCAAGGTT 59.640 36.000 0.0 0.0 32.64 3.50 R
2861 3014 9.534565 TCGATCTTCATTTTATTCTTTCTCGAT 57.465 29.630 0.0 0.0 0.00 3.59 R
2943 3125 6.947733 TGATTAGTGAACCATGTCAGGAAAAT 59.052 34.615 0.0 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.698855 ATGGACAAAGATCCTCCACG 57.301 50.000 2.06 0.00 39.75 4.94
41 42 0.613260 TGGACAAAGATCCTCCACGG 59.387 55.000 0.00 0.00 39.75 4.94
129 139 1.194781 AATCTGCTCACCACCGGAGT 61.195 55.000 9.46 1.17 34.83 3.85
136 146 1.068417 CACCACCGGAGTTGTTCGA 59.932 57.895 9.46 0.00 0.00 3.71
138 148 1.666872 CCACCGGAGTTGTTCGACC 60.667 63.158 9.46 0.00 0.00 4.79
142 152 1.300388 CGGAGTTGTTCGACCCGTT 60.300 57.895 0.00 0.00 35.83 4.44
144 154 1.422388 GGAGTTGTTCGACCCGTTAC 58.578 55.000 0.00 0.00 0.00 2.50
146 156 2.228822 GGAGTTGTTCGACCCGTTACTA 59.771 50.000 0.00 0.00 0.00 1.82
162 172 4.038162 CGTTACTATCCTCCTCCTCTTTGG 59.962 50.000 0.00 0.00 37.10 3.28
174 184 1.535444 TCTTTGGGGAGCAGTCCGA 60.535 57.895 0.00 0.00 45.05 4.55
235 267 1.520564 GTGTATGATGCGGGCACGA 60.521 57.895 15.48 0.00 44.60 4.35
238 270 1.880796 TATGATGCGGGCACGAACG 60.881 57.895 15.48 0.00 44.60 3.95
252 284 0.171455 CGAACGACTTCCTCCTCCAG 59.829 60.000 0.00 0.00 0.00 3.86
257 289 1.614824 ACTTCCTCCTCCAGGGCAG 60.615 63.158 0.00 0.00 43.67 4.85
346 378 1.136500 GCCCTCTACTTCTTACCACGG 59.864 57.143 0.00 0.00 0.00 4.94
355 387 0.031043 TCTTACCACGGTCACACACG 59.969 55.000 0.00 0.00 0.00 4.49
373 405 4.561606 CACACGTCCTTGTAGCACTAATAC 59.438 45.833 0.00 0.00 0.00 1.89
380 412 5.067413 TCCTTGTAGCACTAATACTCCTTCG 59.933 44.000 0.00 0.00 0.00 3.79
482 514 0.170561 CGTGAGACCGAATCCGAACT 59.829 55.000 0.00 0.00 38.22 3.01
485 517 0.731417 GAGACCGAATCCGAACTCGA 59.269 55.000 0.00 0.00 43.02 4.04
487 519 1.334243 AGACCGAATCCGAACTCGATC 59.666 52.381 0.00 0.00 43.02 3.69
548 580 4.802051 GGATCCGCTGCCTGCCAA 62.802 66.667 0.00 0.00 38.78 4.52
611 643 2.041216 AGTAAAGTGGCTAGGGTTTGGG 59.959 50.000 0.00 0.00 0.00 4.12
614 646 4.041762 TGGCTAGGGTTTGGGCCG 62.042 66.667 0.00 0.00 46.72 6.13
615 647 4.815108 GGCTAGGGTTTGGGCCGG 62.815 72.222 0.00 0.00 35.08 6.13
621 653 2.678470 GGTTTGGGCCGGGATACA 59.322 61.111 2.18 0.00 39.74 2.29
622 654 1.000646 GGTTTGGGCCGGGATACAA 60.001 57.895 2.18 0.00 39.74 2.41
698 730 4.699522 GGACGCGCCCAGGTCTTT 62.700 66.667 6.57 0.00 33.70 2.52
712 744 6.213600 GCCCAGGTCTTTCTATATTCATCCTA 59.786 42.308 0.00 0.00 0.00 2.94
735 767 6.521527 AAATTTAGGCTGGATATGAGAGGT 57.478 37.500 0.00 0.00 0.00 3.85
752 784 1.375908 GTGCGAGTCAATCCAGGCA 60.376 57.895 0.00 0.00 0.00 4.75
766 798 4.695560 GGCATATGAGGCCGGTAC 57.304 61.111 6.97 0.00 42.39 3.34
791 823 6.238648 CGTGAAGTTGTCTAGATTGGGTTTTT 60.239 38.462 0.00 0.00 0.00 1.94
852 885 0.034059 AGTTGGTCGAGCTTCCACAG 59.966 55.000 16.64 0.00 33.12 3.66
867 967 0.179150 CACAGGTCTAGTCGAGCAGC 60.179 60.000 0.00 0.00 42.56 5.25
895 995 0.323725 GCTCATCTTCCTTTGCCCCA 60.324 55.000 0.00 0.00 0.00 4.96
909 1010 2.517959 TGCCCCAAAAACATCTCTCTG 58.482 47.619 0.00 0.00 0.00 3.35
922 1023 1.613925 TCTCTCTGTGTTTACGCTGCT 59.386 47.619 0.00 0.00 0.00 4.24
975 1076 1.001633 GACTCGGAGCCACAAAACCTA 59.998 52.381 4.58 0.00 0.00 3.08
976 1077 1.628846 ACTCGGAGCCACAAAACCTAT 59.371 47.619 4.58 0.00 0.00 2.57
978 1079 2.420022 CTCGGAGCCACAAAACCTATTG 59.580 50.000 0.00 0.00 36.37 1.90
1032 1133 1.152756 ACCAAAGCTGTCCCACACC 60.153 57.895 0.00 0.00 0.00 4.16
1154 1255 3.181967 CTCCGCCGCAAGAACGAG 61.182 66.667 0.00 0.00 38.71 4.18
1292 1396 3.976701 ATTCCCGTTCCAGCAGGCG 62.977 63.158 0.00 0.00 33.74 5.52
1298 1402 3.241530 TTCCAGCAGGCGGTGACT 61.242 61.111 9.48 0.00 43.56 3.41
1413 1517 3.766051 GGTCCTTTTTCCTGCATCTCATT 59.234 43.478 0.00 0.00 0.00 2.57
1421 1526 3.359033 TCCTGCATCTCATTTCCCTTTG 58.641 45.455 0.00 0.00 0.00 2.77
1443 1548 4.461081 TGGAAACCGTAATCAAAATGGAGG 59.539 41.667 0.00 0.00 0.00 4.30
1491 1598 5.996219 TGATTCAGTTGTGTAAACATTCCG 58.004 37.500 0.00 0.00 0.00 4.30
1495 1602 2.952978 AGTTGTGTAAACATTCCGGCAA 59.047 40.909 0.00 0.00 0.00 4.52
1497 1604 2.577700 TGTGTAAACATTCCGGCAACT 58.422 42.857 0.00 0.00 0.00 3.16
1519 1626 4.584874 TGAAACACCTTCAACTTCAGTCA 58.415 39.130 0.00 0.00 41.21 3.41
1885 2017 3.557054 GGATGATTCGGGGATTTCGATCA 60.557 47.826 0.00 0.00 36.49 2.92
1887 2019 3.402110 TGATTCGGGGATTTCGATCATG 58.598 45.455 0.00 0.00 36.49 3.07
2071 2204 3.093814 TCGATGGTACTGTTTCTGCCTA 58.906 45.455 0.00 0.00 0.00 3.93
2193 2328 5.106830 CGATTGTTAACTTTGGGTACAGTCC 60.107 44.000 7.22 0.00 0.00 3.85
2204 2339 4.203654 GGGTACAGTCCCTTAACTTCTG 57.796 50.000 0.00 0.00 43.85 3.02
2206 2341 3.836562 GGTACAGTCCCTTAACTTCTGGA 59.163 47.826 0.00 0.00 0.00 3.86
2248 2383 4.735873 GCTCAGCATTTTTCTAATCCCAGC 60.736 45.833 0.00 0.00 0.00 4.85
2316 2452 6.995511 TCTAAACAGCCGTTTATTATGCTT 57.004 33.333 5.75 0.00 44.52 3.91
2317 2453 7.385778 TCTAAACAGCCGTTTATTATGCTTT 57.614 32.000 5.75 0.00 44.52 3.51
2318 2454 8.495361 TCTAAACAGCCGTTTATTATGCTTTA 57.505 30.769 5.75 0.00 44.52 1.85
2320 2456 7.985634 AAACAGCCGTTTATTATGCTTTATG 57.014 32.000 0.00 0.00 43.59 1.90
2335 2474 3.443681 GCTTTATGTTGTGCATACCAGGT 59.556 43.478 0.00 0.00 39.57 4.00
2735 2876 3.109230 GCATGTTGCTCTAGTTTGACG 57.891 47.619 0.00 0.00 40.96 4.35
2857 3010 7.657364 GAATCTGAATTCCGTTTTCGAAAATG 58.343 34.615 28.24 28.24 43.79 2.32
2926 3108 9.305925 CATCTTTAATAGCATTGTTTTCCCTTC 57.694 33.333 0.00 0.00 0.00 3.46
2943 3125 7.606135 TTCCCTTCTCGTGGTCAATATTATA 57.394 36.000 0.00 0.00 0.00 0.98
2992 3178 6.251376 CACAAACTGTTAAGCAAAGACACTTC 59.749 38.462 0.00 0.00 0.00 3.01
3127 3438 5.057149 AGAATTCGCTACGCCATTTCTATT 58.943 37.500 0.00 0.00 0.00 1.73
3130 3441 5.554822 TTCGCTACGCCATTTCTATTTTT 57.445 34.783 0.00 0.00 0.00 1.94
3203 3514 4.831155 ACAGCTACAGTCTACAAGGTACAA 59.169 41.667 0.00 0.00 0.00 2.41
3211 3522 6.706270 ACAGTCTACAAGGTACAAAGTGAATG 59.294 38.462 0.00 0.00 0.00 2.67
3520 3876 2.554032 GCTGTGCTGTGTTCAAATACCT 59.446 45.455 0.00 0.00 0.00 3.08
3583 3939 6.589907 AGCCGTTCCAAACATATTCAAAATTC 59.410 34.615 0.00 0.00 0.00 2.17
3737 4093 2.164338 GCCTCTATTCTACTCCCTCCG 58.836 57.143 0.00 0.00 0.00 4.63
3835 4214 6.598064 ACAAATCTAAGACAACTAATTCGGGG 59.402 38.462 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.204146 GCTGGTACTTCCTCCATCCA 58.796 55.000 0.00 0.00 37.07 3.41
1 2 1.501582 AGCTGGTACTTCCTCCATCC 58.498 55.000 0.00 0.00 37.07 3.51
2 3 3.007398 CCATAGCTGGTACTTCCTCCATC 59.993 52.174 0.00 0.00 37.79 3.51
3 4 2.975489 CCATAGCTGGTACTTCCTCCAT 59.025 50.000 0.00 0.00 37.79 3.41
4 5 2.023404 TCCATAGCTGGTACTTCCTCCA 60.023 50.000 0.00 0.00 43.61 3.86
5 6 2.365941 GTCCATAGCTGGTACTTCCTCC 59.634 54.545 0.00 0.00 43.61 4.30
129 139 3.091545 AGGATAGTAACGGGTCGAACAA 58.908 45.455 1.31 0.00 0.00 2.83
136 146 1.858246 AGGAGGAGGATAGTAACGGGT 59.142 52.381 0.00 0.00 0.00 5.28
138 148 3.512219 AGAGGAGGAGGATAGTAACGG 57.488 52.381 0.00 0.00 0.00 4.44
142 152 3.116707 CCCCAAAGAGGAGGAGGATAGTA 60.117 52.174 0.00 0.00 41.22 1.82
144 154 2.090494 TCCCCAAAGAGGAGGAGGATAG 60.090 54.545 0.00 0.00 41.22 2.08
146 156 0.725133 TCCCCAAAGAGGAGGAGGAT 59.275 55.000 0.00 0.00 41.22 3.24
162 172 2.187946 CATGGTCGGACTGCTCCC 59.812 66.667 8.23 0.00 31.93 4.30
174 184 2.764637 GAAGGGGTTCGTGCCATGGT 62.765 60.000 14.67 0.00 0.00 3.55
235 267 0.905337 CCCTGGAGGAGGAAGTCGTT 60.905 60.000 0.00 0.00 46.33 3.85
238 270 1.613630 TGCCCTGGAGGAGGAAGTC 60.614 63.158 0.00 0.00 46.33 3.01
266 298 2.990479 GAAGGGAGTGGATGCGGT 59.010 61.111 0.00 0.00 0.00 5.68
323 355 0.248949 GGTAAGAAGTAGAGGGCGCG 60.249 60.000 0.00 0.00 0.00 6.86
346 378 1.137513 GCTACAAGGACGTGTGTGAC 58.862 55.000 0.00 0.00 32.75 3.67
355 387 5.855740 AGGAGTATTAGTGCTACAAGGAC 57.144 43.478 0.00 0.00 36.76 3.85
397 429 0.747283 GGAAGCTCGAGGTCCGTCTA 60.747 60.000 18.90 0.00 39.75 2.59
525 557 4.593864 GGCAGCGGATCCGACTCC 62.594 72.222 37.64 26.74 42.83 3.85
548 580 2.439701 TTCCGACGATCTCCGGCT 60.440 61.111 15.22 0.00 46.22 5.52
566 598 1.153667 CACTCCGCCTCAAGCTCTC 60.154 63.158 0.00 0.00 40.39 3.20
586 618 2.903926 ACCCTAGCCACTTTACTCACT 58.096 47.619 0.00 0.00 0.00 3.41
611 643 1.676006 CCTTCACATTTGTATCCCGGC 59.324 52.381 0.00 0.00 0.00 6.13
614 646 9.520515 ACATATATTCCTTCACATTTGTATCCC 57.479 33.333 0.00 0.00 0.00 3.85
621 653 6.682537 ACCCCACATATATTCCTTCACATTT 58.317 36.000 0.00 0.00 0.00 2.32
622 654 6.279813 ACCCCACATATATTCCTTCACATT 57.720 37.500 0.00 0.00 0.00 2.71
712 744 6.302269 CACCTCTCATATCCAGCCTAAATTT 58.698 40.000 0.00 0.00 0.00 1.82
731 763 0.460987 CCTGGATTGACTCGCACCTC 60.461 60.000 0.00 0.00 0.00 3.85
735 767 0.829990 TATGCCTGGATTGACTCGCA 59.170 50.000 0.00 0.00 0.00 5.10
752 784 1.340248 CTTCACGTACCGGCCTCATAT 59.660 52.381 0.00 0.00 0.00 1.78
766 798 3.926616 ACCCAATCTAGACAACTTCACG 58.073 45.455 0.00 0.00 0.00 4.35
832 864 1.272490 CTGTGGAAGCTCGACCAACTA 59.728 52.381 8.47 0.24 37.94 2.24
852 885 0.811915 TGAAGCTGCTCGACTAGACC 59.188 55.000 1.00 0.00 0.00 3.85
867 967 3.891422 AGGAAGATGAGCTGTCTGAAG 57.109 47.619 0.00 0.00 0.00 3.02
895 995 5.527582 AGCGTAAACACAGAGAGATGTTTTT 59.472 36.000 7.58 0.55 44.61 1.94
909 1010 1.623973 GACCGGAGCAGCGTAAACAC 61.624 60.000 9.46 0.00 0.00 3.32
922 1023 2.361104 GCTGCAAATGGGACCGGA 60.361 61.111 9.46 0.00 0.00 5.14
975 1076 2.509964 GAGGGTATTCACTCCCACCAAT 59.490 50.000 3.04 0.00 45.64 3.16
976 1077 1.913419 GAGGGTATTCACTCCCACCAA 59.087 52.381 3.04 0.00 45.64 3.67
984 1085 2.703007 GAGCATGAGGAGGGTATTCACT 59.297 50.000 0.00 0.00 0.00 3.41
1274 1378 2.044946 GCCTGCTGGAACGGGAAT 60.045 61.111 14.77 0.00 38.48 3.01
1421 1526 4.676986 GCCTCCATTTTGATTACGGTTTCC 60.677 45.833 0.00 0.00 0.00 3.13
1433 1538 4.453480 TCCTATTAGGGCCTCCATTTTG 57.547 45.455 10.74 0.00 35.59 2.44
1443 1548 5.320488 ACCCAGTTTTATCCTATTAGGGC 57.680 43.478 9.88 0.00 37.28 5.19
1491 1598 2.427095 AGTTGAAGGTGTTTCAGTTGCC 59.573 45.455 0.00 0.00 46.01 4.52
1497 1604 4.584874 TGACTGAAGTTGAAGGTGTTTCA 58.415 39.130 0.00 0.00 43.92 2.69
1519 1626 8.408043 TTGGATTTCACAGTTTGATCTACAAT 57.592 30.769 0.00 0.00 38.36 2.71
2071 2204 5.880054 AGCACAATGTTAAGAATACGCTT 57.120 34.783 0.00 0.00 0.00 4.68
2116 2249 7.096023 GCAATACCAGAATAGTGAGACATAACG 60.096 40.741 0.00 0.00 0.00 3.18
2219 2354 8.200120 GGGATTAGAAAAATGCTGAGCTAAATT 58.800 33.333 5.83 0.00 0.00 1.82
2283 2419 4.385825 ACGGCTGTTTAGATGAAGTGAAA 58.614 39.130 0.00 0.00 0.00 2.69
2316 2452 4.657013 TCAACCTGGTATGCACAACATAA 58.343 39.130 0.00 0.00 42.88 1.90
2317 2453 4.293662 TCAACCTGGTATGCACAACATA 57.706 40.909 0.00 0.00 40.38 2.29
2318 2454 3.153369 TCAACCTGGTATGCACAACAT 57.847 42.857 0.00 0.00 43.18 2.71
2320 2456 3.119495 GGAATCAACCTGGTATGCACAAC 60.119 47.826 0.00 0.00 0.00 3.32
2335 2474 1.167851 CGAGCAGGCAAAGGAATCAA 58.832 50.000 0.00 0.00 0.00 2.57
2490 2630 4.625311 CGATCTTTTGTTAAAATGCACCCC 59.375 41.667 0.00 0.00 0.00 4.95
2644 2785 7.148289 CCACATACTTATGGATCATCTGCAATC 60.148 40.741 0.00 0.00 38.34 2.67
2735 2876 7.667043 TGATACAGATTACAACACTTTCACC 57.333 36.000 0.00 0.00 0.00 4.02
2770 2911 5.359576 TGCACTAATGTCTTTGTTCAAGGTT 59.640 36.000 0.00 0.00 32.64 3.50
2850 3003 9.973246 TTTATTCTTTCTCGATCTTCATTTTCG 57.027 29.630 0.00 0.00 0.00 3.46
2860 3013 9.790433 CGATCTTCATTTTATTCTTTCTCGATC 57.210 33.333 0.00 0.00 0.00 3.69
2861 3014 9.534565 TCGATCTTCATTTTATTCTTTCTCGAT 57.465 29.630 0.00 0.00 0.00 3.59
2926 3108 9.489084 TCAGGAAAATATAATATTGACCACGAG 57.511 33.333 0.00 0.00 0.00 4.18
2943 3125 6.947733 TGATTAGTGAACCATGTCAGGAAAAT 59.052 34.615 0.00 0.00 0.00 1.82
3211 3522 9.463443 AAGCGTTTAATTTAGCATCCATAATTC 57.537 29.630 0.00 0.00 0.00 2.17
3520 3876 8.094548 AGTGAATTAGCAACTGTGTAGTGATAA 58.905 33.333 0.00 0.00 37.19 1.75
3621 3977 1.408702 GCAGTGCCAAAAAGAGGAACA 59.591 47.619 2.85 0.00 37.13 3.18
3737 4093 7.824779 ACAGATCTAAGACAACTAATTTGGGAC 59.175 37.037 0.00 0.00 39.84 4.46
3835 4214 4.813161 GGGAGTACCTTTTATTACTTCCGC 59.187 45.833 0.00 0.00 34.81 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.