>input_sequence_41734
--------------------------------------------------------------------------------
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------------------------------------------------------------ATGCTCCGTATCTCACCAAA
GCTGTCCCACACCGCCGCACGCCTCGGAACACCCCGCACACCCGCCGCCGCCGCCGCCGCCGCGGAAAGATGAAAGCCAT
CGGAAGCGGCGGCGAGTGGTGGTGGAACCTCCCGTCTCTCCGCCGCAAGAACGAGTCGCGCCGCCGCGGCCGCCGCAACC
AAGACGCTCGCGGCCGCCGCCGCGGGCCCCCGCGGGAGCCGCTC---TCGTCGTCGTCGTCGGACTCCGTCGGCCAAAGC
CGTGGCTGGCCCCTCGAATTCCCGTTCCAGCAGGCGGTGACTGCCGCCTGCCTCACCCTCACCGGCGACACAATGGCGCA
GGTCCACCGCCGCATCGTCGACCGCCGGAAACGCGGCCCCGAACCCGACAGCAAGGTCCTTTTTCCTGCATCTCATTTCC
-CTTTGGAAACCGTAATCAAAATGGAGGCCC--TAATAGGATAAAACTGGGTTATGATTCAGTTGTGTAAACATTCCGGC
AACTGAAACACCTTCAACTTCAGTCAT---TGTAGATCAAACTGTGAAATCCAAATCAGTAGTGTGCGTATACTAAATCA
TAGCCGTGCATCACCATGCCACAAGTTAGCTAATCTCACAATGCA---------------CTGTGATGA-------CCTG
ACACTTTACGATTGTACTAAGTTCTCGCACGCGCCGGTGTCCTTCTTTCAGGCTCTTGTGCCGGATCTATTGCTCAACCA
CGATTGGCTTCGTGGGCTTCGTATAGCATCTTACGGATTTCTTCTCTATGGTCCTGGCTCATATGCATGGTATCAGTTTC
TCGACAAAAGCATGCCCAAGCAAACACTCGCGACTCTGTCCGCTAAGGTATGGTATGCACCCTCCCATGTAACCGGATGA
TTCGGGGATTTCGATCATGATACATTCTATATTTTA-TGTCTGTTGTCGTTCCAGGTCCTACTGAACCAGATTGTTCTTG
GTCCATGTGTTATCTCTGTAATTTTTGCCTGGAATAACTTGTGGTTAGGAAAATTGTCAGAATTGCCATCTAAGTATCAG
AATGACGCCCTTCCCACTCTTCTCGATGGTACTGTTTCTGCCTAAGCGTATTCTTAACATTGTGCTTGAACGAAAACAAC
TCATGTTACGTTATGTCTCACT--ATTCTGGTATTGCAGGGTTCAAATTTTGGATTCCAGTATCGATTGTTAACTTTGGG
TACAGTCCCTTAACTTCTGGATCTACTTTTAAAAATTTAGCTCAGCATTTTTCTAATCCCAGCCTAGGGTAGTA-TAAAG
TTTCTAGTTTAGTCAGTATTTCACTTCATCTAAACAGCCGTTTATTATGCTTTATG---TTGTGCATACCAGGTTGATTC
CTTTGCCTGCTCGTGTTGCCTTCATGTCCTCTTGTTCCATCTTCTGGAACTTCTA-TTTGTCGACCACAATGAACAAATG
AACTTCTAGTTCTCAACTTCAGGTTAGTTCTTGCTGCAACTCAAAATCTCCGATGATTACTGTAAGTGCGGGGT-GCATT
TTAACAAAAGATCGGCTCGTCTTATTGTTCAGATCCATTCAACTGCAGCAGAGGAGGATCTGAAGGGGCTTCTTTCCTAT
TATACGTAGTATGGCGGTGGTGCCTTGGGCAATTCTGGTGGTGGTCTCTTGAGTCGACAGACATGATTGCAGATGATCCA
TAAGTATGTGGATACGGTCGATGGAGAAATTACAGTTTTTTCTAAACATCTATGAGCATGTTGCTCTAGTTTGACGGTGA
AAGTGTTGTAATCTGTATCATTTGTTCAGTAACCTTGA------------ACAAAGACATTAGTGCAGGCCTCTGAATAC
AGTTTTGTAAGTGCCATTCTCCAGGAATCTGAATTCCGTTTTCGAAAATGAAGAT-------------------------
--CGAGAAAGAATAAAATGAAGA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>chr3D_1_TraesCS3D01G281800
TGGATGGAGGAAGTACCAGCTATGGACAAAGATCCTCCACGGCTGCCCTTGCCCTTGCATGCGCCTTTGTCGT-------
--GGAAGTAGCGCTCGAAGACGCAAAATGGATCAAGCCAAATCTGCTCACCACCGGAGTTGTTCGACCCGTTACTATCCT
CCTCCTCTTTGGGGAGCAGTCCGACCATGGCACGAACCCCTTCATTTTGCTTCCGGGCGAGGGCACGTGT----------
------------ATGATGCGGGCACGAACGACTTCCTCCTCCAGGGCAGTGTGCGCCACCGCATCCACTCCCTTCGCCTC
CGCCATGTCGGTAGCGAGGCGCGCCTCGACCTCCCGCGCCCTCTACTTCTTACCACGGTCACACACGTCCTTGTAGCACT
AATACTCCTTCGCACCGGAGATGGTCGGTAGACGGACCTCGAGCTTCCAGCTCCGGCGGATCCGACCGCCCATTGCACCG
AGGCAATAAATTCCCGTGAGACCGAATCCGAACTCGATCGGGCGCATACGCCCGAGTCGACGGATCAGGACTGATCGGAG
TCGGATCCGCTGCCTGCCAAGCCGGAGATCGTCGGAAGAGAGCTTGAGGCGGAGTGGAGTGAGTAAAGTGGCTAGGGTTT
GGGCCGGGATACAAATGTGAAGGAATATATGTGGGGTCGAGATAGGCTAGCGTAGGCCGGGTCCGGCGTGACGGACGCGC
CCAGGTCTTTCTATATTCATCCTAAATTTAGGCTGGATATGAGAGGTGCGAGTCAATCCAGGCATATGAGGCCGGTACGT
GAAGTTGTCTAGATTGGGTTTTTTTGACGGTCAATCACCGGACGAGCCCGGCTGTAAAAAAAAT-AGTTGGTCGAGCTTC
CACAGGTCTAGTCGAG----------------------------------------------------------------
---CAGCTTCAGACAGCTCATCTTCCTTTGCCCCAA-AAACATCTCTCTGTGTTTACGCTGCTCCGGTCCCATTTGCAGC
GACACCAGGCCAGAGGACTCGGAGCCACAAAACCTATTGGTGGGAGTGAATACCCTCCTCATGCTCCGTATCTCACCAAA
GCTGTCCCACACCGCCGCACGCCTCGGAACACCCCGCACACCCGCCGCCGCCGCCGCCGCCGCGGAAAGATGAAAGCCAT
CGGAAGCGGCGGCGAGTGGTGGTGGAACCTCCCGTCTCTCCGCCGCAAGAACGAGTCGCGCCGCCGCGGCCGCCGCAACC
AAGACGCTCGCGGCCGCCGCCGCGGGCCCCCGCGGGAGCCGCTC---TCGTCGTCGTCGTCGGACTCCGTCGGCCAAAGC
CGTGGCTGGCCCCTCGAATTCCCGTTCCAGCAGGCGGTGACTGCCGCCTGCCTCACCCTCACCGGCGACACAATGGCGCA
GGTCCACCGCCGCATCGTCGACCGCCGGAAACGCGGCCCCGAACCCGACAGCAAGGTCCTTTTTCCTGCATCTCATTTCC
-CTTTGGAAACCGTAATCAAAATGGAGGCCC--TAATAGGATAAAACTGGGTTATGATTCAGTTGTGTAAACATTCCGGC
AACTGAAACACCTTCAACTTCAGTCAT---TGTAGATCAAACTGTGAAATCCAAATCAGTAGTGTGCGTATACTAAATCA
TAGCCGTGCATCACCATGCCACAAGTTAGCTAATCTCACAATGCA---------------CTGTGATGA-------CCTG
ACACTTTACGATTGTACTAAGTTCTCGCACGCGCCGGTGTCCTTCTTTCAGGCTCTTGTGCCGGATCTATTGCTCAACCA
CGATTGGCTTCGTGGGCTTCGTATAGCATCTTACGGATTTCTTCTCTATGGTCCTGGCTCATATGCATGGTATCAGTTTC
TCGACAAAAGCATGCCCAAGCAAACACTCGCGACTCTGTCCGCTAAGGTATGGTATGCACCCTCCCATGTAACCGGATGA
TTCGGGGATTTCGATCATGATACATTCTATATTTTA-TGTCTGTTGTCGTTCCAGGTCCTACTGAACCAGATTGTTCTTG
GTCCATGTGTTATCTCTGTAATTTTTGCCTGGAATAACTTGTGGTTAGGAAAATTGTCAGAATTGCCATCTAAGTATCAG
AATGACGCCCTTCCCACTCTTCTCGATGGTACTGTTTCTGCCTAAGCGTATTCTTAACATTGTGCTTGAACGAAAACAAC
TCATGTTACGTTATGTCTCACT--ATTCTGGTATTGCAGGGTTCAAATTTTGGATTCCAGTATCGATTGTTAACTTTGGG
TACAGTCCCTTAACTTCTGGATCTACTTTTAAAAATTTAGCTCAGCATTTTTCTAATCCCAGCCTAGGGTAGTA-TAAAG
TTTCTAGTTTAGTCAGTATTTCACTTCATCTAAACAGCCGTTTATTATGCTTTATG---TTGTGCATACCAGGTTGATTC
CTTTGCCTGCTCGTGTTGCCTTCATGTCCTCTTGTTCCATCTTCTGGAACTTCTA-TTTGTCGACCACAATGAACAAATG
AACTTCTAGTTCTCAACTTCAGGTTAGTTCTTGCTGCAACTCAAAATCTCCGATGATTACTGTAAGTGCGGGGT-GCATT
TTAACAAAAGATCGGCTCGTCTTATTGTTCAGATCCATTCAACTGCAGCAGAGGAGGATCTGAAGGGGCTTCTTTCCTAT
TATACGTAGTATGGCGGTGGTGCCTTGGGCAATTCTGGTGGTGGTCTCTTGAGTCGACAGACATGATTGCAGATGATCCA
TAAGTATGTGGATACGGTCGATGGAGAAATTACAGTTTTTTCTAAACATCTATGAGCATGTTGCTCTAGTTTGACGGTGA
AAGTGTTGTAATCTGTATCATTTGTTCAGTAACCTTGA------------ACAAAGACATTAGTGCAGGCCTCTGAATAC
AGTTTTGTAAGTGCCATTCTCCAGGAATCTGAATTCCGTTTTCGAAAATGAAGAT-------------------------
--CGAGAAAGAATAAAATGAAGATCGAAGCAGGTTCCAGCATCTTTAATAGCATTG--TTTTCCCTTCTCGTGGTCAATA
TTATATTTTCCTGACATGGTTCACTAATCACAAACTG----TTAAGCAAAGACACTTCTTTCACAGTATAAT--------
--------------------------------------------------------------------------------
----------------------------------A---CTGAGCTATGCCGACTAGAAAACCATTTATTAGTGAAGCCTC
TGGTACAGACTCTGTTGGCTTTCAAAAAGAATTACAAAGCATATTTGACAGAAAAGAATTCGCTACGCCATTTCTATTTT
TCTTTTACATGACAAACAATTTACAGATTAGAGAAAGCCTAAAAATTGACACAGCTACAGTCTACAAGGTACAAAGTGAA
TGAATTATGGATGCTAA-ATTAAACGCTTGTAAAACTACCACTTCTAGTGTTCTTTTATCTT------------------
--------------------------GGGGATTTTGTGGAAATGCATCTTCCACACAGGATAAGCCGCGATATAGCTCGT
GACCTTCCACTTCCAGTCCTGACCCTAAACGACGAGAGCTGTGGAAAAATGATTGGATTAGCATTGACAGAAACATATAT
ATGATAAACATAAGAACAAAAACTGTAATTTAAGCAGGGTTCAAAAACTCTGACGCTAATTTTTCATGCACATTACCAGT
GCGCAAACACCATAGCTGTGCTGTGTTCAAATACCTTATCACTACACAGTTGCTAATTCACTTAAAAATCTACAGCCGTT
CCAAACATATTCAAAATTCCTCAAGAATGTATCATTAAAAATCAACCTAACAAGGTTGTTCCTCTTTTTGGCACTGCGTT
GATGTTACCATTTCCTTTTTCAAATTTGTTTGGTTTCCTCATAGAAATTGTTATATTCATCTTGAGAAAAAGGCCTCTAT
TCTACTCCCTCCGTCCCAAATTAGTTGTCTTAGATCTGTCAAGATACAAATGT-----------------------ATCT
AACACGTGTTAGATACATCCATATCTAGACAAATCTAAGACAACTAATTCGGGGCGGAAGTAATAAAAGGTACTCCCTCC
GTCCCATAACATCTTATATTGT
>chr3A_7
------GAGGAAGTACCAGCTATGGACAAAGATCCTCCACAACTGCCCTTGCCCTTGCATGCGCCTTTGTCGTCTTTGTC
GTGGAAGTAGCGCTCGAAGACGCAAAATGGATCAAGCCAAATCTGCTCACCACCGGAGCTGTTCGGCTCGTCATTGTCCT
CCTCCTCTTTGAGGAGCAGTCCGGCCATGGCACGAACCCCTTCATTTTGCTTCCGGGCGAGGGCACGTGTGTTCCTCCTC
TGCTGCTACTGTATGATGCGGGCACGTACAACTTCCTCCTCCACGGCAATGTGCGCCGCCGCATCCACTGCCTTCGCCTC
CGCCATGTCGGCAGCGAGGCGCGCCTCGACCTCCTGCGCCCTCTACTTCTTACCACGATCACACACATCCTTGTAGCACT
AATAGTCCTTCACACCGGAGATGGTCGGCAGACGGACCTCGAGCTTCCAGCTCCGGCGGATCCAAGCGCCAATTGCACCG
AGGCAATAAATTCCCGTGAGACCGAATCCGAACCCGGTTGGGCGCATACGCCCGAGTCGACGGATCAGGACTGATCAGAA
TCGGATCCGCTGCCTGCCATGCCGGAGATCGTCGGAATAGAGCTTGAGGCGGAGTGGGGTGAGTAAAGTGGCTAGGGTTT
GGTCCAAGATACGGATGTGAAGGAATATATGTGGGGTCGAGATAGGCTAGCGTAGGCCGGGTCCGACGTGACGGACGCGC
CCAGGTCTTCCTATATTCATCCTTAATTTAGGCTGGATATGAAAGGCGCGAGTCAATCCAGGCGTATGAGGCCGGTATGT
GAAGTTGTCTAGATTGGGTTTT-TTGACGGTCAATCACCGGACGAGCCCGGCTGTAAAAAAAAAAAGTTGGTCGAGCTTC
CACATGTCTAGTCGAGCAGAACAGGTGATGCTCGACACCAGCAGGTATTGCGCTCCCAGTGCGTTGAGCTTGGACAGATA
AAACAGTTTGAGACAGCTCATCTTCCTTTGCCCTCAGAAACATCTCTCTTTGTTTACGCTGCCCCGGTCCCATTTGCAGC
GACACCAGGCCAGAGGACTCGGAGCCACAAAACCTTATTGGTGGGGTGAATACCCTCCTCATGCTCCGTATCTCACCAAA
GCTGTCCCACACTGCCGCACGCCTCAGAACACCCCGCACACCTGCCGCCGCCGCCGCCGCCGCGGAAAGATGAAAGCCAT
CGGAAGCGGCGGCGAGTGGTGGTGGAACCTCCCGTCTCTCCGCCGCAAGAACGATTCGCGCCGCCGCGGCCGCCGCAACC
AGGACGCTCGCGGCCGCCGCCGCGGCCCCCCGCGGGAGCCGCTC---TCGTCGTCGTCGTCGGACTCCGTCGGCCAAAGC
CGGGGCTGGCCCCTCGACTTCCCGTTCCAGCAGGCCGTGACCGCCGCCTGCCTCACCCTCACCGGCGACACAATGGCGCA
GGTCCACCGCCGCATCGTCGACCGCCGGAAACGCGGCCCCGAACCCGACAGCAAGGTCCTTTTTCCTGCATCTGATCCCC
-CTTTTGAAAGCGTATGAAAATGGAAGTTCTAATAATAGGATAAAACTGGGTTATGATTAAGTTGGGCAAACATTCCTGC
AGCCGAAACACCTTCAACTTCAGTCTTCAGTGTAGATCAAACTGCAAAATCCAATTCAGTAGTGTGC-TATAGTAAGAAA
AAACCGTGCATCACCATGCCAC-AGTTAGCTAATCTCACAATGCAGTGCCATCTTGGATACTTTGACGAGTGTAAACCTA
ACACTTTACGATTGCACTGAATTCTCACACGCGCGGGTGTCCTCCTTTCAGGCTCTTGTACCGGATCTATTGCTCAACCA
TGATTGGCTTCGTGGGCTCCGTATAGCATCTTACGGGTTTCTTCTCTATGGTCCTGGCTCATATGCATGGTATCAGTTTC
TTGACAAAAGCATGCCCAAGCAAACACTCGCGACTCTGTCCGCTAAGGTATGGTATGCACCCTCCCATGTAACCGGATGA
TTCGGGGATTTCGATCTTAATACATTCTATATTTTTGTGTCTGTTGTCGTTCCAGGTCCTACTGAACCAGATTGTTCTTG
GTCCATGTGTTATCTCTGTAATTTTTGCCTGGAATAACTTGTGGTTAGGAAAATTGTCAGAATTGCCATCTAAGTATCAG
AATGACGCCCTTCCCACTCTTCTCGATGGTACTGTTTCTGCCTGAGCGTGTTCTTAACGTTGTGCTTGAACGAAAACAAC
TCATGTTATGTTATGTCTCACTTTATTCTGGTATTGCAGGGTTCAAATTTTGGATTCCAGTATCGATTGTTAACTTTGGG
TACAGTCTCTTAACTTCTAGCTCTACTTTC-AATATTTAGCTAAGCATTTTTCTAATCCCACTCTAGTGTAGTATTAAAT
TTTCTAGTTTAGTCAGTAGTTCACTTTATCTAAACAGCCGTTTATTATGCTAATTTTCATTGTGCATACCAGGATGATTC
CTTTGCCTGCTCGTGTTGCCTTCATGTCCTCTTGTTCCATCTTCTGGAACTTCTA-TTTGTCGACCACAATGAACAAATG
AACTTCTAGTTCTCAACTTCAGGTTAGTTCTTGCTGCCACTCAAAATCTCTGATGATTACCGTAAGCGC-GGGGAGCATT
TTAACAAAAGATCGGCTCGTCTTATTGTTCAGATCCATTCAACTGCAGCAGAGGAGGATCTGAAGGGGCTTCTTTCCTAT
TATACATAGTATGGCGGTGGTGCCTCGGGCAATTCTGGTGGTGGTCTCTTGAGTTGACAGACATTATTGCAGATGATCCA
TAAGTATGTGGATACGGTCGATGGAGAAATTACAGTTCTTTCTAAACATCTATGAGCATGTTGCTCTAGTTTGACAGTGA
AAGTGTTGTAACCTGTATCATTTGTTCAGTGACCTTGAA-CTTTTATATGACAAAGACATTAGTGCAGGCCTCTGAATAC
AGTTTTGTAAGTGCCATTCTCCAGGAATCTGAATTCCGTTTTTGAAAATTAAACTTCAATGTGTGAGTTTCTATGGACAG
TCCAAGAAAGAATAAAATGAAGATCGAAGCAGGTTCCAGCATCTTTAATAGCATTGCTTTTTCCCTTTTCGTGGTCAATA
TTATCTTTTCCTGAAATAGTTCACTAATCACAAACTGTTCCTTAAGCAAAGATACTTGTTTCACAGTATAATACTCCCTC
TGTCCCAAAATTCTTGTCTTAGATTTGTCTAAATACGGATGTATCAAGTCATGTTTTAGTACTACATACATTCGTATCTA
GACAAATCTAAGACAAGAATTTTGGGACGGCAGGAGTACTGAGCTATGCTGAGTAGAAAACCATTTATTAGTGAAGCCTC
AGGTCCAGACTCTGTTGGCTTTCAAAAAGAATTACAAAGCATATTTGACAGAAAAGAATTTGCTACGCCATTTCTATCTT
CCTTTTACATGACAAACAATTTACAGATTAGAGAAAGCCTAAAAATTGACACAGCTACAGTCTACAAGGTACAGGGTGAA
TAAATTATGGATGCTAA-ATTGAACGCTTGTAAAACTACCACTTCTAGTGTTCTTTTATCTT------------------
--------------------------GGGGATTTTGTGGAAATGCATCTTCCACACAGGATAAGCCGCGATATAGCTCGT
GACCTTCCACTTCCAGTCCTGACCCTAAACGACGAGAGCTGTGGAAAAATGATTGGATTAGCATTGACAGAAACATATAT
ATGATAAACATAAGAACAAAAACTGTAATTTAAGCAGGGTTCAAAAACTCCGGAGCTAATTTTTCATGCACATTACCAGT
GCGCAAACACCATAGCTGTGCTGTGTTCAAATACCATATCACTACACAGTTGCTAATTCACTTAAAAATCTACAGCCGTT
CCAAAC-TATTCAAAATTTGTCAAGAATGTATCAGGAAAAATCAACCTAACAAGGTAGTTCCTCTTTTTGGCACTGCGTT
AATGTTACCGTTTCCTTTTTCAAATACTTTTGGTTTCCTCATAGAAATTGTCATATTCATCTTAAGAAAAAGGCCTCTAT
TCTACTCCCTCCATCCCAAATTAGTTGTCTTAGATCTGTCAAGACACAAATGTATCTAACACAAAGATAAAGGTGTATCT
AACACGTGTTAGATACATCCATATCTAGACAAATCTAAGACAACTAATTCGGGACGGAAGTAATAAAAGGTACTCCCTCC
GTCCCATAACATCTTATATTGT
>chr3B_865
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---CAGTTTCGGACAGCTCATCTTCCTTTGCCCCCA-AAACATCTCTCTCTGTTTACGCTGCCCCGGTCCCATTTGCAGC
GACACCAGGCCAGAGGACTCGGAGCCACAAAACC-TATTGGTGGGGTGAATACCCTCCTCATGCTCCGTATCTCACCAAA
GCTGTCCCACACTGCCGCACGCCTCAGAACACCCCACACAC---------CCGCCGCCGCCGCGGAAAGATGAAAGCCAT
CGGAAGCGGCGGCGAGTGGTGGTGGAACCTCCCGTCCCTCCGCCGCAAGAACGACTCGCGCCGCCGCGGCCGCCGCAACC
AAGACGCTCGCGGCCGCCGCCGCGGGCCCCCGCGGGAGCCGCTCTCGTCGTCGTCGTCGTCGGACTCCGTCGGCCAAAGC
CGTGGCTGGCCCCTCGACTTCCCGTTCCAGCAGGCCGTGACCGCCGCCTGCCTCACCCTCACCGGCGACACAATGGCGCA
GGTCCACCGCCGCATCGTCGACCGCCGGAAACGCGGCCCCGAACCCGACAGCAAGGTCATTTTTCCTGCATCTCATCTCC
ACTTTTGAAACCGTTATAAAAATGGAGTCCC--TAATAGGATAAAACTGGATTATGATTCAGTTGTGTAAGCATTCCTGC
AGCCGAAACACCTTCAACTTCAGTCTTCAGTGTAGATCAAACTGTGAAGTCCAAATCAGTAGTGTGCGTATACTAAATCA
TAGCCGTGCATCACCATGCCACAAGTTAGCTAATCTCACAATGCA---------------CTGTGATGAGTGTAAACCTG
ACACTTTACGATTGTACTAAGTTCTCGCACGCGCCGGTGT-CTTCTTTCAGGCTCTTGTGCCGGATCTGTTGCTCAACCA
CGATTGGCTTCGTGGGCTTCGTATAGCATCTTACGGATTTCTTCTCTATGGTCCTGGCTCATATGCATGGTATCAGTTTC
TCGACAAAAGCATGCCCAAGCAAACACTCGCGACTCTGTCCGCTAAGGTATGGTATGCACCCTCCCATGTAACCGGATGA
TTCGGGGATTTCGATCTTAATACATTCTGTATTTTA-TGTCTGTTGTCGTTCCAGGTCCTACTGAACCAGATTGTTCTTG
GTCCATGTGTCATCTCTGTAATTTTTGCCTGGAATAACTTGTGGTTAGGAAAATTGTCAGAATTGCCATCGAAGTATCAG
AATGACGCCCTTCCCACTCTTCTCGATGGTAATGTTTCTGCCTGAGTGTATTCTCAACATTGTGCTTGAACGAAAACAAC
TCATTTTATGTTATGTCTCACTTTATTCTGCTACTGCAGGGTTTAAATTTTGGATTCCAGTATCGATTGTTAACTTTGGG
TACAGTCTCTTAACTTCTACCTCTACTTTTAAATATTTAGCTCAGCATTTTTCTAATCCTAGTCTAAGGTAGTATTAAGT
TGTCTAGTTTAGACAATACTTCATG-----TAAACAATCATTTCTTATGCTAATTTTCAATATGCATTCCAGGGTGATTC
CTTTGCCAGCTCGTGTTGCCTTCATGTCCTCTTGTTCCATCTTTTGGAACTTCTA-TTTGTCGACCACAATGAACAAATG
AACTTCTAGTTCTCATCTTCAGGTTAGTTCTTGCTGCAACTCAAAATCTCCGATGATTACTCTATGCGT-GGGT-ACATT
TTAACAAAAGATCGGC-CGTCTTATTGTTCAGATCCATTCAACTGCAACAGAGGAGGATCTGAAGGGGCTTCTTTCCTAT
TATACGTAGTACGGCGATGGTGCCTTTGGCAGTTCTGGTGGTGGTCTCTTGAGTTGACAGACATTATTGCAGATGATCCA
TAAGTATGTGGATACTGTCGATGGAGAAATTACAGTTTTGTGTAAACATCTATGAGCATGTTGCTCTAGTTTGACAGTGG
AAGTGTTGTAATTTGTATCGTTTGTTCAGTGACCTT-AA-CTTTTATATGACAAAGACATTAGTGCAGGCCTCTGAATAC
AGTTTTGTAAGTGCAATTCTCCAGGAATCTGAATTCCATTTTTGAAAATTGAACTTCAATGTGCGAATTTCTAGGAACAG
TCCAAGGAAGAATAAAATGAAGATCGAAGCAGGTTCCAGAAG---TACTAGCATTG--TTTCCCCTTTTTGTGGTTAATA
TTATCTTTCCCTGACATGGTTCAC-AATCACAAACTGTTCCTTAAGCAAAGACACTTGTTTCACAGTATAAT--------
--------------------------------------------------------------------------------
----------------------------------AGTACTGAGCTATGCCGACTAGAAAACCATTTATTAGTGAAGCCTC
TGGTACAGACTCCGTTGGCTTTTAAAAAGAATTACACAGCATATTTGACAGAAAAGAATTTGCTACGCCATTTCTATCTT
CCTTTTACATGACAAACAATTTACAGATTAGAGAAAGCCTAAAAATTGACACAGCTACAGTCTACAAGGTACAGAGTGAA
TAAATTATGGATGTTAAAATTAAACGCTTGTAAAACTACCACTTCTAGTGTTCTTTTATCTTGGGGATTTTGTGGAAAAC
TACCACTTCTAGTGTTCTTTTATCTTGGGGATTTTGTGGAAATGCATCTTCCACACAGGATAAGCCGAGATATAGCTCGT
GACCTTCCACTTCCAGTCCTGAACCTAAACGACGAGAGCTGTGGAAAA-TGATTGGATTAGCATTGACAGAAACATATAT
ATGATAAACATAAGAACAAAAACTGTAATTTAAGCAGGGTTCAAAAACTCTGACGCTAATATTTCATGCACACTACCAGT
GCGCAAACACCATAGCTGTGCTGTGTTCAAGTACCGTATCACTATACAGTTGCTAATTCACTTAAAA-TCTACAGTCATT
CCAAACATATTCAAAATTTCTCAACGATGTATCAGGAAAAATCAACCTAACAAGGTAGTTCCTCTTTTTGGCACTGCGTT
GATGTTACCATTTCCTTTTTCAAATTTGTTTGGCTTCCTCATAGAAATTATTATATTCATCTTGAGAAAAAGGCCTCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>chr6A_2337
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------TGATTC
CTTTGCCTGCTCGTGTTGCCTTCATGTCCTCTTGTTCCATCTTCTGGAACTTCTATTTTGTCGACCACAATGAACAAATG
AACTTCTAGTTCTCAACTTCAGGCCAGTTCTTGCTGCAACTCAAAATCTCCGATGATTACTCTAAGCGC-GGGT-GCATT
CTAACAAAAGACCGGCTCGTCTTATTGTTCAGATCCATTCAACTGCAGCAGAGGAGGATCTGGAGGGGCTTCTTTCCTAT
TATACGTAGTATGGCGGTGGTGCCTTGGGCAATTCTGGTGGTGATCTCTTGAGTCGACAGACATTATCGCAGATGATCCA
TAAGTATGTGGATACGGTCGATGGAGAAATTACAGTTTTGTCTAAACATCTATGAGCATGTTGCTCTAATTTGACAATGA
AAGTGTTGTAATCTGTATCATTTATTCAGTGACCTT-AAACTTTTATATGACAAAGACGTTAGTGCAGGCATCTGAATAC
AATTTTGTAAGTGCCATTCTCCAGGAATCTGAATTCCATTTTTTAAAATTAAACTTTAATGTGCGAGTTTCTATGGACAG
TCCGAGAAAGAATAAAATGAAGATCAAAGCAGGTTCCAGCATCTTTAATAGCATT---TTTTCCCTTTTCGTGGTCAATA
TTATCTTTTCCTAACATGGTTCACTAATCACAAACTGTTCCTTAAGCAAAGACACTTGTTTCACAGT---AT--------
--------------------------------------------------------------------------------
----------------------------------AATACTGAGCTATGCCCACTAGAAAACCATTTATTAATGA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>SNPs
SSSSSS----------------------------------SS--------------------------------------
----------------------------------------------------------S------S-S---S-S-S----
-----------S-----------S--------------------------------------------------------
--------------------------S--S-------------S----S--------S-----------S----------
-----------S----------------------S----------------------S--------S-------------
----S------S----------------S----------------------------------S-S----S---------
---------------------------------S--S-S-------------------------------------S--S
-------------------S-----------------S-------------------S----------------------
--S--SS-----SS---------------------------------------------------S--------------
---------S-------------S------------------S---S----------------S-------------S--
----------------------S----------------------------------------S----------------
----S---------------------------------------------------------------------------
------S---------------------------S--------------S------------S-----------------
-----------------------------------SS-S-SS--S-----------------------------------
------------S------------S----------------S-------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
-----------------S-----------------S-----S--------------------------------------
----------------------------------------------------------------------------S---
-----S-----------S---------S-------------------------------------------------S--
-S-S---------------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S-S-------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------S-----------------------------------------------------------------------
-------S----------S-S------------S----------------------------S----------------S
------------------S-------S------------------------SSS-S-----------------S------
--------------------------------------------------------------------------------
------------------------------------------------------------------S--S----------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
---------------------------------------------------------------------------S----
------------------------------S-------------------------------------------------
------------------------------------------S------S--SS--------------------------
-------------------------------------------------------------------S------------
----S----------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S----------------S--
S------------------------------------------------------------------------S------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
------------------S---------------SS--------------------S-----------------------
--------------------------------------------------------------------------------
------------S-------------------------------S-----------------------------------
-----------------------------------------------------S--------------------------
----------------------
>forward_387
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TCTTACCACGGTCACACACG-------------
--------------------------------------------------------------------------------
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----------------------
>reverse_2474
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTGATTC
CTTTGCCTGCTCG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>forward_885
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AGTTGGTCGAGCTTC
CACAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>reverse_2630
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------GGGGTGCATTT
TAACAAAAGATCG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>forward_967
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CACAGGTCTAGTC
GAGCAGC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_2911
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AACCTTGAACAAAGACATTAGTGCA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>forward_995
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GCTCATCTTCCTTTGCCCCA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_3014
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATCGAGAAAGAATAAAATGAAGATCGA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>forward_1076
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GACTCGGAGCCACAAAACCTA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_3125
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ATTTTCCTGACATGGTTCACTAATCA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
