Multiple sequence alignment - TraesCS3D01G277300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G277300 chr3D 100.000 4815 0 0 1 4815 384578799 384573985 0.000000e+00 8892.0
1 TraesCS3D01G277300 chr3A 94.915 2891 94 21 1245 4095 507129501 507126624 0.000000e+00 4475.0
2 TraesCS3D01G277300 chr3A 91.612 763 42 13 499 1242 507130319 507129560 0.000000e+00 1035.0
3 TraesCS3D01G277300 chr3A 93.237 414 26 2 12 423 507130723 507130310 4.120000e-170 608.0
4 TraesCS3D01G277300 chr3A 82.549 510 40 18 4136 4613 507126623 507126131 2.090000e-108 403.0
5 TraesCS3D01G277300 chr3A 92.079 101 5 3 402 500 729669428 729669329 6.500000e-29 139.0
6 TraesCS3D01G277300 chr3A 91.089 101 7 2 401 501 16175124 16175222 8.410000e-28 135.0
7 TraesCS3D01G277300 chr3A 87.671 73 9 0 4614 4686 713570368 713570296 8.590000e-13 86.1
8 TraesCS3D01G277300 chr3B 93.998 2899 103 23 1245 4094 499813337 499810461 0.000000e+00 4324.0
9 TraesCS3D01G277300 chr3B 90.661 771 34 15 500 1242 499814151 499813391 0.000000e+00 990.0
10 TraesCS3D01G277300 chr3B 84.656 378 20 14 4243 4596 499807390 499807027 4.610000e-90 342.0
11 TraesCS3D01G277300 chr3B 94.845 97 3 1 4128 4224 499810394 499810300 3.000000e-32 150.0
12 TraesCS3D01G277300 chr4A 96.721 183 3 3 4635 4815 614001993 614002174 7.830000e-78 302.0
13 TraesCS3D01G277300 chr1A 92.000 200 4 1 4616 4815 560819096 560818909 2.210000e-68 270.0
14 TraesCS3D01G277300 chr1A 97.059 34 0 1 4617 4650 291230106 291230138 6.730000e-04 56.5
15 TraesCS3D01G277300 chr5D 80.408 245 41 6 90 331 533666563 533666803 3.830000e-41 180.0
16 TraesCS3D01G277300 chr5D 92.708 96 5 1 415 510 222673145 222673238 2.340000e-28 137.0
17 TraesCS3D01G277300 chr1B 95.604 91 4 0 413 503 644581766 644581856 3.880000e-31 147.0
18 TraesCS3D01G277300 chr1B 91.089 101 9 0 408 508 544492574 544492674 2.340000e-28 137.0
19 TraesCS3D01G277300 chr5B 96.552 87 3 0 414 500 480252697 480252611 1.400000e-30 145.0
20 TraesCS3D01G277300 chr4B 95.506 89 4 0 415 503 592079892 592079804 5.020000e-30 143.0
21 TraesCS3D01G277300 chr4B 94.505 91 5 0 410 500 159918612 159918522 1.810000e-29 141.0
22 TraesCS3D01G277300 chr7D 89.524 105 9 2 404 508 86323488 86323386 1.090000e-26 132.0
23 TraesCS3D01G277300 chr2A 89.189 74 8 0 4613 4686 530675654 530675581 5.130000e-15 93.5
24 TraesCS3D01G277300 chr2A 77.083 144 31 2 4614 4756 557275678 557275820 1.110000e-11 82.4
25 TraesCS3D01G277300 chr2A 91.111 45 4 0 4623 4667 148162459 148162503 1.450000e-05 62.1
26 TraesCS3D01G277300 chr2B 78.723 141 27 3 4617 4756 105834737 105834875 1.850000e-14 91.6
27 TraesCS3D01G277300 chr6A 86.486 74 10 0 4614 4687 2150136 2150209 1.110000e-11 82.4
28 TraesCS3D01G277300 chr6A 86.441 59 5 2 4248 4303 574307691 574307749 1.450000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G277300 chr3D 384573985 384578799 4814 True 8892.00 8892 100.00000 1 4815 1 chr3D.!!$R1 4814
1 TraesCS3D01G277300 chr3A 507126131 507130723 4592 True 1630.25 4475 90.57825 12 4613 4 chr3A.!!$R3 4601
2 TraesCS3D01G277300 chr3B 499807027 499814151 7124 True 1451.50 4324 91.04000 500 4596 4 chr3B.!!$R1 4096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 509 0.251077 ACGGAGGGAGTACGTCACTT 60.251 55.0 0.00 0.0 39.97 3.16 F
903 929 0.322975 CCCTCCACTCCACTCAACTG 59.677 60.0 0.00 0.0 0.00 3.16 F
1081 1113 0.742281 CTTGACCACATGCTCCTCCG 60.742 60.0 0.00 0.0 0.00 4.63 F
2445 2546 0.462581 CGGCTCTGCAGAATGGCTTA 60.463 55.0 18.85 0.0 35.86 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1489 1590 0.537188 AAGGCCTTGATGACGTCGAT 59.463 50.0 19.73 5.64 0.00 3.59 R
2139 2240 0.976641 TCTGAGCATTGTCCGGAGTT 59.023 50.0 3.06 0.00 0.00 3.01 R
3032 3142 0.248843 AAGCGGCAGAGGAGAGAAAG 59.751 55.0 1.45 0.00 0.00 2.62 R
4118 4271 0.179084 ATGAGGTTACATCACCGGCG 60.179 55.0 0.66 0.00 42.33 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.702329 AGTTTCACTGGTAGGAGTATTTCAG 58.298 40.000 0.00 0.00 0.00 3.02
27 28 5.580998 TCACTGGTAGGAGTATTTCAGAGT 58.419 41.667 0.00 0.00 0.00 3.24
50 51 3.550678 GTCGGAGTAAGATTTAAGCCACG 59.449 47.826 0.00 0.00 0.00 4.94
68 69 1.227383 GATGAAATCCCACCGCCCT 59.773 57.895 0.00 0.00 37.38 5.19
133 134 1.453197 GGGGAGGGTGGTATTTGCG 60.453 63.158 0.00 0.00 0.00 4.85
137 138 0.746923 GAGGGTGGTATTTGCGGACC 60.747 60.000 0.00 0.00 36.17 4.46
141 142 0.725117 GTGGTATTTGCGGACCTTCG 59.275 55.000 0.00 0.00 36.62 3.79
168 170 3.490526 GCATTTTTAGTTGTGTGGCAGTG 59.509 43.478 0.00 0.00 0.00 3.66
171 173 0.821711 TTAGTTGTGTGGCAGTGGGC 60.822 55.000 0.00 0.00 43.74 5.36
198 200 2.682856 GGCAATTTCTTCAGGCGACATA 59.317 45.455 0.00 0.00 0.00 2.29
207 209 5.245531 TCTTCAGGCGACATAACATTTTCT 58.754 37.500 0.00 0.00 0.00 2.52
252 254 1.453155 AATTGCCGTCGCTTGATCTT 58.547 45.000 0.00 0.00 35.36 2.40
253 255 2.309528 ATTGCCGTCGCTTGATCTTA 57.690 45.000 0.00 0.00 35.36 2.10
257 259 3.006940 TGCCGTCGCTTGATCTTATTTT 58.993 40.909 0.00 0.00 35.36 1.82
268 270 9.393249 CGCTTGATCTTATTTTACAACTCAAAA 57.607 29.630 0.00 0.00 0.00 2.44
303 305 1.895131 GTTCATTTGCCACCTCCATGT 59.105 47.619 0.00 0.00 0.00 3.21
304 306 3.088532 GTTCATTTGCCACCTCCATGTA 58.911 45.455 0.00 0.00 0.00 2.29
346 348 7.690952 ACAATTACCGATAGTTAAAGCCAAA 57.309 32.000 0.00 0.00 0.00 3.28
386 388 2.624838 CACTGGCAGGAAACAAATCAGT 59.375 45.455 20.34 0.00 34.78 3.41
415 417 8.585881 AGCTATTTCCTCACGAATTATTAGCTA 58.414 33.333 0.00 0.00 35.66 3.32
416 418 8.648968 GCTATTTCCTCACGAATTATTAGCTAC 58.351 37.037 0.00 0.00 30.36 3.58
417 419 9.915629 CTATTTCCTCACGAATTATTAGCTACT 57.084 33.333 0.00 0.00 0.00 2.57
418 420 8.819643 ATTTCCTCACGAATTATTAGCTACTC 57.180 34.615 0.00 0.00 0.00 2.59
419 421 7.584122 TTCCTCACGAATTATTAGCTACTCT 57.416 36.000 0.00 0.00 0.00 3.24
420 422 7.204496 TCCTCACGAATTATTAGCTACTCTC 57.796 40.000 0.00 0.00 0.00 3.20
421 423 6.999272 TCCTCACGAATTATTAGCTACTCTCT 59.001 38.462 0.00 0.00 0.00 3.10
422 424 7.173562 TCCTCACGAATTATTAGCTACTCTCTC 59.826 40.741 0.00 0.00 0.00 3.20
423 425 7.204496 TCACGAATTATTAGCTACTCTCTCC 57.796 40.000 0.00 0.00 0.00 3.71
424 426 6.073167 TCACGAATTATTAGCTACTCTCTCCG 60.073 42.308 0.00 0.00 0.00 4.63
425 427 5.764192 ACGAATTATTAGCTACTCTCTCCGT 59.236 40.000 0.00 0.00 0.00 4.69
426 428 6.262720 ACGAATTATTAGCTACTCTCTCCGTT 59.737 38.462 0.00 0.00 0.00 4.44
427 429 6.797995 CGAATTATTAGCTACTCTCTCCGTTC 59.202 42.308 0.00 0.00 0.00 3.95
428 430 6.578163 ATTATTAGCTACTCTCTCCGTTCC 57.422 41.667 0.00 0.00 0.00 3.62
429 431 3.361281 TTAGCTACTCTCTCCGTTCCA 57.639 47.619 0.00 0.00 0.00 3.53
430 432 2.217510 AGCTACTCTCTCCGTTCCAA 57.782 50.000 0.00 0.00 0.00 3.53
431 433 2.526432 AGCTACTCTCTCCGTTCCAAA 58.474 47.619 0.00 0.00 0.00 3.28
432 434 2.897969 AGCTACTCTCTCCGTTCCAAAA 59.102 45.455 0.00 0.00 0.00 2.44
433 435 3.515901 AGCTACTCTCTCCGTTCCAAAAT 59.484 43.478 0.00 0.00 0.00 1.82
434 436 4.710375 AGCTACTCTCTCCGTTCCAAAATA 59.290 41.667 0.00 0.00 0.00 1.40
435 437 5.044558 GCTACTCTCTCCGTTCCAAAATAG 58.955 45.833 0.00 0.00 0.00 1.73
436 438 5.163540 GCTACTCTCTCCGTTCCAAAATAGA 60.164 44.000 0.00 0.00 0.00 1.98
437 439 5.941555 ACTCTCTCCGTTCCAAAATAGAT 57.058 39.130 0.00 0.00 0.00 1.98
438 440 5.665459 ACTCTCTCCGTTCCAAAATAGATG 58.335 41.667 0.00 0.00 0.00 2.90
439 441 5.422331 ACTCTCTCCGTTCCAAAATAGATGA 59.578 40.000 0.00 0.00 0.00 2.92
440 442 5.661458 TCTCTCCGTTCCAAAATAGATGAC 58.339 41.667 0.00 0.00 0.00 3.06
441 443 5.422331 TCTCTCCGTTCCAAAATAGATGACT 59.578 40.000 0.00 0.00 0.00 3.41
442 444 5.661458 TCTCCGTTCCAAAATAGATGACTC 58.339 41.667 0.00 0.00 0.00 3.36
443 445 5.186992 TCTCCGTTCCAAAATAGATGACTCA 59.813 40.000 0.00 0.00 0.00 3.41
444 446 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
445 447 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
446 448 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
447 449 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
448 450 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
449 451 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
492 494 9.667107 AAATTGAGTCATCTATTTTAGAACGGA 57.333 29.630 0.00 0.00 37.52 4.69
493 495 8.879342 ATTGAGTCATCTATTTTAGAACGGAG 57.121 34.615 0.00 0.00 38.50 4.63
494 496 6.806751 TGAGTCATCTATTTTAGAACGGAGG 58.193 40.000 0.00 0.00 38.50 4.30
495 497 6.163135 AGTCATCTATTTTAGAACGGAGGG 57.837 41.667 0.00 0.00 38.50 4.30
496 498 5.897824 AGTCATCTATTTTAGAACGGAGGGA 59.102 40.000 0.00 0.00 38.50 4.20
497 499 6.041069 AGTCATCTATTTTAGAACGGAGGGAG 59.959 42.308 0.00 0.00 38.50 4.30
498 500 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
507 509 0.251077 ACGGAGGGAGTACGTCACTT 60.251 55.000 0.00 0.00 39.97 3.16
513 515 1.612463 GGGAGTACGTCACTTGACACT 59.388 52.381 9.94 6.18 44.99 3.55
613 616 2.194271 CGAACATTCCTCGCTTACTCC 58.806 52.381 0.00 0.00 0.00 3.85
614 617 2.159226 CGAACATTCCTCGCTTACTCCT 60.159 50.000 0.00 0.00 0.00 3.69
615 618 3.676324 CGAACATTCCTCGCTTACTCCTT 60.676 47.826 0.00 0.00 0.00 3.36
616 619 3.983044 ACATTCCTCGCTTACTCCTTT 57.017 42.857 0.00 0.00 0.00 3.11
619 622 4.695928 ACATTCCTCGCTTACTCCTTTTTC 59.304 41.667 0.00 0.00 0.00 2.29
650 653 1.308069 GGAAATTCCTCGCTGCTGCA 61.308 55.000 16.29 0.88 34.30 4.41
674 683 4.880426 TCCATCGGCTCCCCTCCC 62.880 72.222 0.00 0.00 0.00 4.30
890 911 0.633921 CTCTCTCTTCCTCCCCTCCA 59.366 60.000 0.00 0.00 0.00 3.86
899 925 1.079256 CTCCCCTCCACTCCACTCA 59.921 63.158 0.00 0.00 0.00 3.41
903 929 0.322975 CCCTCCACTCCACTCAACTG 59.677 60.000 0.00 0.00 0.00 3.16
904 930 1.051812 CCTCCACTCCACTCAACTGT 58.948 55.000 0.00 0.00 0.00 3.55
1061 1092 2.031163 GCTGCTCGTGGGTGAGTT 59.969 61.111 0.00 0.00 38.28 3.01
1079 1111 2.079925 GTTCTTGACCACATGCTCCTC 58.920 52.381 0.00 0.00 0.00 3.71
1081 1113 0.742281 CTTGACCACATGCTCCTCCG 60.742 60.000 0.00 0.00 0.00 4.63
1097 1129 1.542915 CTCCGGTTCGTCTTCTGGTAA 59.457 52.381 0.00 0.00 0.00 2.85
1139 1176 4.692155 GCCCTTTTGGAATGTGAAATCTTG 59.308 41.667 0.00 0.00 44.07 3.02
1150 1187 7.255801 GGAATGTGAAATCTTGGTTAAGTGGAA 60.256 37.037 0.00 0.00 35.38 3.53
1152 1189 5.009610 TGTGAAATCTTGGTTAAGTGGAAGC 59.990 40.000 0.00 0.00 35.38 3.86
1218 1260 1.104630 TGCGTATGGTACCGTGATGA 58.895 50.000 17.34 0.00 0.00 2.92
1242 1284 5.231702 TGTCCGACGAATATGTTCTTTTGA 58.768 37.500 0.00 0.00 32.00 2.69
1243 1285 5.119588 TGTCCGACGAATATGTTCTTTTGAC 59.880 40.000 0.00 3.45 32.00 3.18
1291 1392 7.411274 TGGAATTAAAATACTAAATGGACGCG 58.589 34.615 3.53 3.53 0.00 6.01
1489 1590 1.011968 GCGCATCTACGACACCAACA 61.012 55.000 0.30 0.00 34.06 3.33
1633 1734 2.364579 CCTACTACCCGGCCACCA 60.365 66.667 2.24 0.00 0.00 4.17
1659 1760 3.693382 CTACATCACCGTCGGCGCA 62.693 63.158 12.28 0.00 36.67 6.09
1752 1853 1.896660 GAAGGTCGGCCTGCACAAA 60.897 57.895 10.71 0.00 46.33 2.83
2445 2546 0.462581 CGGCTCTGCAGAATGGCTTA 60.463 55.000 18.85 0.00 35.86 3.09
2460 2561 1.153597 GCTTAAATTGGGCATGCGGC 61.154 55.000 12.44 0.00 43.74 6.53
2490 2591 3.860641 TGTCGATTGCTCTGCTATTCAA 58.139 40.909 0.00 0.00 0.00 2.69
2619 2720 3.195698 GCTGGAATGCGGACGACC 61.196 66.667 0.00 0.00 0.00 4.79
2684 2785 2.919666 ATGTAACGAATGCTTGCACC 57.080 45.000 0.00 0.00 0.00 5.01
2685 2786 1.890876 TGTAACGAATGCTTGCACCT 58.109 45.000 0.00 0.00 0.00 4.00
2690 2794 4.616181 AACGAATGCTTGCACCTTATAC 57.384 40.909 0.00 0.00 0.00 1.47
2731 2835 7.493367 ACTAGCTTTGGATGTAGTCTGAATAC 58.507 38.462 8.24 8.24 0.00 1.89
2757 2861 6.889722 TGAAAACTAGCCAATTGTAAGCCTAT 59.110 34.615 4.43 0.00 0.00 2.57
2843 2951 4.574421 TGCAACCGTAAGTCCATTGATATG 59.426 41.667 0.00 0.00 0.00 1.78
2871 2979 5.939764 AGCTGTATTTCTGGACATGTAGA 57.060 39.130 0.00 0.00 0.00 2.59
2874 2982 6.098838 AGCTGTATTTCTGGACATGTAGATGA 59.901 38.462 6.90 0.00 33.36 2.92
2923 3031 4.687948 CAGTTATCAGGTGTTGACTGAGTG 59.312 45.833 7.01 0.00 46.98 3.51
2964 3072 8.299990 ACTACAGAGAAGATAGTGCATTACTT 57.700 34.615 0.00 0.00 40.89 2.24
3063 3173 3.873910 TCTGCCGCTTCTAGCTAAAATT 58.126 40.909 0.00 0.00 39.60 1.82
3064 3174 5.018539 TCTGCCGCTTCTAGCTAAAATTA 57.981 39.130 0.00 0.00 39.60 1.40
3205 3324 2.796593 TCTGCATGAATCGACTTATGCG 59.203 45.455 17.12 12.36 46.61 4.73
3376 3520 4.568359 CACGCAATGCTAGATGACTAAACT 59.432 41.667 2.94 0.00 0.00 2.66
3751 3900 0.601311 GCTCCAGCTCGTCACTGTTT 60.601 55.000 0.00 0.00 38.21 2.83
3759 3908 1.197721 CTCGTCACTGTTTGCCCAATC 59.802 52.381 0.00 0.00 0.00 2.67
3840 3990 2.548904 CGGAGCACGCTCTAGTTAGTAT 59.451 50.000 17.99 0.00 42.38 2.12
3949 4102 9.935241 ACCTATTATGCAGTATGTTATTCTCTG 57.065 33.333 0.00 0.00 39.31 3.35
4095 4248 7.737972 TGGAATCTCTTCGTTGTTATTTGAA 57.262 32.000 0.00 0.00 31.75 2.69
4096 4249 7.806690 TGGAATCTCTTCGTTGTTATTTGAAG 58.193 34.615 0.00 0.00 39.28 3.02
4098 4251 7.094762 GGAATCTCTTCGTTGTTATTTGAAGGT 60.095 37.037 1.47 0.00 38.63 3.50
4099 4252 6.780706 TCTCTTCGTTGTTATTTGAAGGTC 57.219 37.500 1.47 0.00 38.63 3.85
4100 4253 5.404366 TCTCTTCGTTGTTATTTGAAGGTCG 59.596 40.000 1.47 0.00 38.63 4.79
4101 4254 5.051816 TCTTCGTTGTTATTTGAAGGTCGT 58.948 37.500 1.47 0.00 38.63 4.34
4102 4255 6.215121 TCTTCGTTGTTATTTGAAGGTCGTA 58.785 36.000 1.47 0.00 38.63 3.43
4104 4257 6.636666 TCGTTGTTATTTGAAGGTCGTATC 57.363 37.500 0.00 0.00 0.00 2.24
4105 4258 6.157904 TCGTTGTTATTTGAAGGTCGTATCA 58.842 36.000 0.00 0.00 0.00 2.15
4106 4259 6.309494 TCGTTGTTATTTGAAGGTCGTATCAG 59.691 38.462 0.00 0.00 0.00 2.90
4107 4260 6.090358 CGTTGTTATTTGAAGGTCGTATCAGT 59.910 38.462 0.00 0.00 0.00 3.41
4108 4261 7.274033 CGTTGTTATTTGAAGGTCGTATCAGTA 59.726 37.037 0.00 0.00 0.00 2.74
4109 4262 9.095065 GTTGTTATTTGAAGGTCGTATCAGTAT 57.905 33.333 0.00 0.00 0.00 2.12
4110 4263 9.661563 TTGTTATTTGAAGGTCGTATCAGTATT 57.338 29.630 0.00 0.00 0.00 1.89
4111 4264 9.309516 TGTTATTTGAAGGTCGTATCAGTATTC 57.690 33.333 0.00 0.00 0.00 1.75
4114 4267 7.770801 TTTGAAGGTCGTATCAGTATTCATG 57.229 36.000 0.00 0.00 0.00 3.07
4115 4268 5.289595 TGAAGGTCGTATCAGTATTCATGC 58.710 41.667 0.00 0.00 0.00 4.06
4117 4270 4.876125 AGGTCGTATCAGTATTCATGCTG 58.124 43.478 0.00 0.00 41.16 4.41
4118 4271 3.430218 GGTCGTATCAGTATTCATGCTGC 59.570 47.826 0.26 0.00 39.87 5.25
4119 4272 3.120286 GTCGTATCAGTATTCATGCTGCG 59.880 47.826 0.26 0.00 39.87 5.18
4120 4273 2.159920 CGTATCAGTATTCATGCTGCGC 60.160 50.000 0.00 0.00 39.87 6.09
4121 4274 1.233019 ATCAGTATTCATGCTGCGCC 58.767 50.000 4.18 0.00 39.87 6.53
4122 4275 1.153597 TCAGTATTCATGCTGCGCCG 61.154 55.000 4.18 0.00 39.87 6.46
4123 4276 1.889105 AGTATTCATGCTGCGCCGG 60.889 57.895 4.18 0.00 0.00 6.13
4124 4277 2.180204 GTATTCATGCTGCGCCGGT 61.180 57.895 4.18 0.00 0.00 5.28
4125 4278 2.179547 TATTCATGCTGCGCCGGTG 61.180 57.895 11.67 11.67 0.00 4.94
4126 4279 2.585791 TATTCATGCTGCGCCGGTGA 62.586 55.000 21.76 0.99 0.00 4.02
4161 4345 4.562757 CGTTTCATTCACCAGAGGTCCTAA 60.563 45.833 0.00 0.00 31.02 2.69
4214 4398 5.885912 TGAATTATGTGGGCTTCTACTTTCC 59.114 40.000 0.00 0.00 0.00 3.13
4218 4402 2.224523 TGTGGGCTTCTACTTTCCAGTG 60.225 50.000 0.00 0.00 34.06 3.66
4238 4445 3.495001 GTGACTCCACTTCAACTGTTAGC 59.505 47.826 0.00 0.00 40.10 3.09
4241 4448 4.381411 ACTCCACTTCAACTGTTAGCTTC 58.619 43.478 0.00 0.00 0.00 3.86
4413 7499 8.656806 TGAAGGGTTAACTTCTAATCTTCTCAA 58.343 33.333 5.42 0.00 45.49 3.02
4439 7544 6.346096 TGTTATGTTAGTTCTCCACTATGCC 58.654 40.000 0.00 0.00 37.84 4.40
4459 7564 5.857268 TGCCGATGATATTCTCATTTCTCA 58.143 37.500 0.00 0.00 44.83 3.27
4462 7567 8.096414 TGCCGATGATATTCTCATTTCTCATTA 58.904 33.333 0.00 0.00 44.83 1.90
4503 7610 6.763135 TCATTTCTCATGTATCAGGCTACAAC 59.237 38.462 0.00 0.00 35.37 3.32
4510 7617 4.917385 TGTATCAGGCTACAACCACAATT 58.083 39.130 0.00 0.00 0.00 2.32
4511 7618 4.941263 TGTATCAGGCTACAACCACAATTC 59.059 41.667 0.00 0.00 0.00 2.17
4512 7619 3.788227 TCAGGCTACAACCACAATTCT 57.212 42.857 0.00 0.00 0.00 2.40
4513 7620 3.674997 TCAGGCTACAACCACAATTCTC 58.325 45.455 0.00 0.00 0.00 2.87
4514 7621 3.072330 TCAGGCTACAACCACAATTCTCA 59.928 43.478 0.00 0.00 0.00 3.27
4515 7622 4.012374 CAGGCTACAACCACAATTCTCAT 58.988 43.478 0.00 0.00 0.00 2.90
4516 7623 4.460382 CAGGCTACAACCACAATTCTCATT 59.540 41.667 0.00 0.00 0.00 2.57
4517 7624 5.047802 CAGGCTACAACCACAATTCTCATTT 60.048 40.000 0.00 0.00 0.00 2.32
4518 7625 5.183904 AGGCTACAACCACAATTCTCATTTC 59.816 40.000 0.00 0.00 0.00 2.17
4519 7626 5.183904 GGCTACAACCACAATTCTCATTTCT 59.816 40.000 0.00 0.00 0.00 2.52
4520 7627 6.317857 GCTACAACCACAATTCTCATTTCTC 58.682 40.000 0.00 0.00 0.00 2.87
4521 7628 6.072508 GCTACAACCACAATTCTCATTTCTCA 60.073 38.462 0.00 0.00 0.00 3.27
4522 7629 6.906157 ACAACCACAATTCTCATTTCTCAT 57.094 33.333 0.00 0.00 0.00 2.90
4523 7630 6.684686 ACAACCACAATTCTCATTTCTCATG 58.315 36.000 0.00 0.00 0.00 3.07
4524 7631 6.266103 ACAACCACAATTCTCATTTCTCATGT 59.734 34.615 0.00 0.00 0.00 3.21
4525 7632 7.448161 ACAACCACAATTCTCATTTCTCATGTA 59.552 33.333 0.00 0.00 0.00 2.29
4526 7633 8.464404 CAACCACAATTCTCATTTCTCATGTAT 58.536 33.333 0.00 0.00 0.00 2.29
4527 7634 8.218338 ACCACAATTCTCATTTCTCATGTATC 57.782 34.615 0.00 0.00 0.00 2.24
4528 7635 7.284034 ACCACAATTCTCATTTCTCATGTATCC 59.716 37.037 0.00 0.00 0.00 2.59
4542 7649 4.020928 TCATGTATCCGTTGTGGTTGTAGT 60.021 41.667 0.00 0.00 39.52 2.73
4566 7673 5.424252 TCCTGTGTAGAAGTTAAGTATGGGG 59.576 44.000 0.00 0.00 0.00 4.96
4575 7682 4.887367 AGTTAAGTATGGGGTGTAGCCTA 58.113 43.478 0.00 0.00 37.43 3.93
4610 7721 6.207810 TGCAATAAGTAGTAACTTGGGTTTGG 59.792 38.462 1.11 0.00 45.63 3.28
4613 7724 7.991084 ATAAGTAGTAACTTGGGTTTGGAAC 57.009 36.000 1.11 0.00 45.63 3.62
4614 7725 4.383173 AGTAGTAACTTGGGTTTGGAACG 58.617 43.478 0.00 0.00 36.92 3.95
4615 7726 3.564053 AGTAACTTGGGTTTGGAACGA 57.436 42.857 0.00 0.00 36.92 3.85
4616 7727 3.888583 AGTAACTTGGGTTTGGAACGAA 58.111 40.909 0.00 0.00 36.92 3.85
4617 7728 4.271661 AGTAACTTGGGTTTGGAACGAAA 58.728 39.130 0.00 0.00 36.92 3.46
4618 7729 4.705991 AGTAACTTGGGTTTGGAACGAAAA 59.294 37.500 0.00 0.00 36.92 2.29
4619 7730 4.538746 AACTTGGGTTTGGAACGAAAAA 57.461 36.364 0.00 0.00 30.55 1.94
4620 7731 4.118093 ACTTGGGTTTGGAACGAAAAAG 57.882 40.909 0.00 0.00 0.00 2.27
4621 7732 2.588027 TGGGTTTGGAACGAAAAAGC 57.412 45.000 0.00 0.00 33.96 3.51
4622 7733 1.202313 TGGGTTTGGAACGAAAAAGCG 60.202 47.619 0.00 0.00 35.21 4.68
4630 7741 3.825812 ACGAAAAAGCGTTGCAGAG 57.174 47.368 0.00 0.00 42.71 3.35
4631 7742 0.307760 ACGAAAAAGCGTTGCAGAGG 59.692 50.000 0.00 0.00 42.71 3.69
4632 7743 0.998727 CGAAAAAGCGTTGCAGAGGC 60.999 55.000 5.72 5.72 39.41 4.70
4633 7744 0.664466 GAAAAAGCGTTGCAGAGGCC 60.664 55.000 0.00 0.00 39.95 5.19
4634 7745 2.406452 AAAAAGCGTTGCAGAGGCCG 62.406 55.000 0.00 0.00 39.95 6.13
4638 7749 4.379243 CGTTGCAGAGGCCGGTCT 62.379 66.667 9.26 9.26 40.13 3.85
4639 7750 2.743928 GTTGCAGAGGCCGGTCTG 60.744 66.667 16.74 16.22 45.91 3.51
4643 7754 4.463879 CAGAGGCCGGTCTGCAGG 62.464 72.222 16.74 0.00 37.74 4.85
4645 7756 3.075005 GAGGCCGGTCTGCAGGTA 61.075 66.667 16.74 0.00 32.29 3.08
4646 7757 3.077556 AGGCCGGTCTGCAGGTAG 61.078 66.667 8.41 5.08 32.29 3.18
4647 7758 4.840005 GGCCGGTCTGCAGGTAGC 62.840 72.222 15.13 11.75 45.96 3.58
4648 7759 3.775654 GCCGGTCTGCAGGTAGCT 61.776 66.667 15.13 0.00 45.94 3.32
4649 7760 2.496817 CCGGTCTGCAGGTAGCTC 59.503 66.667 15.13 0.00 45.94 4.09
4650 7761 2.496817 CGGTCTGCAGGTAGCTCC 59.503 66.667 15.13 6.42 45.94 4.70
4652 7763 0.752009 CGGTCTGCAGGTAGCTCCTA 60.752 60.000 15.13 0.00 46.24 2.94
4653 7764 1.486211 GGTCTGCAGGTAGCTCCTAA 58.514 55.000 15.13 0.00 46.24 2.69
4654 7765 2.043227 GGTCTGCAGGTAGCTCCTAAT 58.957 52.381 15.13 0.00 46.24 1.73
4655 7766 2.036604 GGTCTGCAGGTAGCTCCTAATC 59.963 54.545 15.13 0.00 46.24 1.75
4656 7767 2.036604 GTCTGCAGGTAGCTCCTAATCC 59.963 54.545 15.13 0.00 46.24 3.01
4657 7768 2.042464 CTGCAGGTAGCTCCTAATCCA 58.958 52.381 5.57 0.00 46.24 3.41
4658 7769 1.762957 TGCAGGTAGCTCCTAATCCAC 59.237 52.381 0.00 0.00 46.24 4.02
4659 7770 1.070914 GCAGGTAGCTCCTAATCCACC 59.929 57.143 0.00 0.00 46.24 4.61
4660 7771 1.694696 CAGGTAGCTCCTAATCCACCC 59.305 57.143 0.00 0.00 46.24 4.61
4661 7772 1.057471 GGTAGCTCCTAATCCACCCC 58.943 60.000 0.00 0.00 0.00 4.95
4662 7773 0.680061 GTAGCTCCTAATCCACCCCG 59.320 60.000 0.00 0.00 0.00 5.73
4663 7774 1.119574 TAGCTCCTAATCCACCCCGC 61.120 60.000 0.00 0.00 0.00 6.13
4664 7775 2.829592 CTCCTAATCCACCCCGCC 59.170 66.667 0.00 0.00 0.00 6.13
4665 7776 3.158648 TCCTAATCCACCCCGCCG 61.159 66.667 0.00 0.00 0.00 6.46
4666 7777 3.158648 CCTAATCCACCCCGCCGA 61.159 66.667 0.00 0.00 0.00 5.54
4667 7778 2.737881 CCTAATCCACCCCGCCGAA 61.738 63.158 0.00 0.00 0.00 4.30
4668 7779 1.523032 CTAATCCACCCCGCCGAAC 60.523 63.158 0.00 0.00 0.00 3.95
4669 7780 2.246761 CTAATCCACCCCGCCGAACA 62.247 60.000 0.00 0.00 0.00 3.18
4670 7781 1.839148 TAATCCACCCCGCCGAACAA 61.839 55.000 0.00 0.00 0.00 2.83
4671 7782 3.622060 ATCCACCCCGCCGAACAAG 62.622 63.158 0.00 0.00 0.00 3.16
4674 7785 4.344865 ACCCCGCCGAACAAGCAT 62.345 61.111 0.00 0.00 0.00 3.79
4675 7786 3.814268 CCCCGCCGAACAAGCATG 61.814 66.667 0.00 0.00 0.00 4.06
4676 7787 3.814268 CCCGCCGAACAAGCATGG 61.814 66.667 0.00 0.00 0.00 3.66
4677 7788 3.814268 CCGCCGAACAAGCATGGG 61.814 66.667 0.00 0.00 0.00 4.00
4678 7789 3.814268 CGCCGAACAAGCATGGGG 61.814 66.667 0.00 0.00 0.00 4.96
4679 7790 2.361104 GCCGAACAAGCATGGGGA 60.361 61.111 0.00 0.00 0.00 4.81
4680 7791 1.754234 GCCGAACAAGCATGGGGAT 60.754 57.895 0.00 0.00 0.00 3.85
4681 7792 2.008268 GCCGAACAAGCATGGGGATG 62.008 60.000 0.00 0.00 0.00 3.51
4694 7805 3.814268 GGATGCGTGCGCCAACAT 61.814 61.111 14.16 5.24 41.09 2.71
4695 7806 2.577644 GATGCGTGCGCCAACATG 60.578 61.111 14.16 0.00 41.09 3.21
4696 7807 3.326889 GATGCGTGCGCCAACATGT 62.327 57.895 14.16 0.00 41.09 3.21
4697 7808 1.976478 GATGCGTGCGCCAACATGTA 61.976 55.000 14.16 0.00 41.09 2.29
4698 7809 1.375853 ATGCGTGCGCCAACATGTAT 61.376 50.000 14.16 0.00 41.09 2.29
4699 7810 1.136565 GCGTGCGCCAACATGTATT 59.863 52.632 4.18 0.00 34.56 1.89
4700 7811 1.133363 GCGTGCGCCAACATGTATTG 61.133 55.000 4.18 0.00 34.56 1.90
4701 7812 1.133363 CGTGCGCCAACATGTATTGC 61.133 55.000 4.18 1.08 0.00 3.56
4702 7813 0.109365 GTGCGCCAACATGTATTGCA 60.109 50.000 4.18 4.77 0.00 4.08
4703 7814 0.600057 TGCGCCAACATGTATTGCAA 59.400 45.000 4.18 0.00 0.00 4.08
4704 7815 1.204231 TGCGCCAACATGTATTGCAAT 59.796 42.857 17.56 17.56 0.00 3.56
4705 7816 2.270047 GCGCCAACATGTATTGCAATT 58.730 42.857 18.75 0.00 0.00 2.32
4706 7817 2.672381 GCGCCAACATGTATTGCAATTT 59.328 40.909 18.75 2.01 0.00 1.82
4707 7818 3.483901 GCGCCAACATGTATTGCAATTTG 60.484 43.478 18.75 14.69 0.00 2.32
4708 7819 3.483901 CGCCAACATGTATTGCAATTTGC 60.484 43.478 18.75 14.49 45.29 3.68
4724 7835 4.085876 GCAGCCTTGCCTGAAAGA 57.914 55.556 0.00 0.00 44.74 2.52
4725 7836 2.576298 GCAGCCTTGCCTGAAAGAT 58.424 52.632 0.00 0.00 44.74 2.40
4726 7837 1.755179 GCAGCCTTGCCTGAAAGATA 58.245 50.000 0.00 0.00 44.74 1.98
4727 7838 1.674962 GCAGCCTTGCCTGAAAGATAG 59.325 52.381 0.00 0.00 44.74 2.08
4728 7839 2.943199 GCAGCCTTGCCTGAAAGATAGT 60.943 50.000 0.00 0.00 44.74 2.12
4729 7840 3.682718 GCAGCCTTGCCTGAAAGATAGTA 60.683 47.826 0.00 0.00 44.74 1.82
4730 7841 4.712476 CAGCCTTGCCTGAAAGATAGTAT 58.288 43.478 0.00 0.00 34.07 2.12
4731 7842 5.743130 GCAGCCTTGCCTGAAAGATAGTATA 60.743 44.000 0.00 0.00 44.74 1.47
4732 7843 6.471146 CAGCCTTGCCTGAAAGATAGTATAT 58.529 40.000 0.00 0.00 34.07 0.86
4733 7844 6.593382 CAGCCTTGCCTGAAAGATAGTATATC 59.407 42.308 0.00 0.00 34.07 1.63
4734 7845 6.270927 AGCCTTGCCTGAAAGATAGTATATCA 59.729 38.462 0.04 0.00 34.07 2.15
4735 7846 6.370166 GCCTTGCCTGAAAGATAGTATATCAC 59.630 42.308 0.04 0.00 34.07 3.06
4736 7847 6.876257 CCTTGCCTGAAAGATAGTATATCACC 59.124 42.308 0.04 0.00 34.07 4.02
4737 7848 6.025749 TGCCTGAAAGATAGTATATCACCG 57.974 41.667 0.04 0.00 34.07 4.94
4738 7849 5.538813 TGCCTGAAAGATAGTATATCACCGT 59.461 40.000 0.04 0.00 34.07 4.83
4739 7850 6.717997 TGCCTGAAAGATAGTATATCACCGTA 59.282 38.462 0.04 0.00 34.07 4.02
4740 7851 7.396339 TGCCTGAAAGATAGTATATCACCGTAT 59.604 37.037 0.04 0.00 34.07 3.06
4741 7852 8.251721 GCCTGAAAGATAGTATATCACCGTATT 58.748 37.037 0.04 0.00 34.07 1.89
4752 7863 8.738106 AGTATATCACCGTATTTTAGAGTAGGC 58.262 37.037 0.00 0.00 0.00 3.93
4753 7864 4.660789 TCACCGTATTTTAGAGTAGGCC 57.339 45.455 0.00 0.00 0.00 5.19
4754 7865 3.385755 TCACCGTATTTTAGAGTAGGCCC 59.614 47.826 0.00 0.00 0.00 5.80
4755 7866 2.702478 ACCGTATTTTAGAGTAGGCCCC 59.298 50.000 0.00 0.00 0.00 5.80
4756 7867 2.701951 CCGTATTTTAGAGTAGGCCCCA 59.298 50.000 0.00 0.00 0.00 4.96
4757 7868 3.326880 CCGTATTTTAGAGTAGGCCCCAT 59.673 47.826 0.00 0.00 0.00 4.00
4758 7869 4.315803 CGTATTTTAGAGTAGGCCCCATG 58.684 47.826 0.00 0.00 0.00 3.66
4759 7870 2.729028 TTTTAGAGTAGGCCCCATGC 57.271 50.000 0.00 0.00 40.16 4.06
4760 7871 1.893315 TTTAGAGTAGGCCCCATGCT 58.107 50.000 0.00 0.00 40.92 3.79
4761 7872 1.131638 TTAGAGTAGGCCCCATGCTG 58.868 55.000 0.00 0.00 40.92 4.41
4762 7873 0.031111 TAGAGTAGGCCCCATGCTGT 60.031 55.000 0.00 0.00 40.92 4.40
4763 7874 0.031111 AGAGTAGGCCCCATGCTGTA 60.031 55.000 0.00 0.00 40.92 2.74
4764 7875 0.106894 GAGTAGGCCCCATGCTGTAC 59.893 60.000 0.00 0.00 40.92 2.90
4765 7876 0.620410 AGTAGGCCCCATGCTGTACA 60.620 55.000 0.00 0.00 40.92 2.90
4766 7877 0.474184 GTAGGCCCCATGCTGTACAT 59.526 55.000 0.00 0.00 40.66 2.29
4767 7878 1.133792 GTAGGCCCCATGCTGTACATT 60.134 52.381 0.00 0.00 36.64 2.71
4768 7879 0.336048 AGGCCCCATGCTGTACATTT 59.664 50.000 0.00 0.00 36.64 2.32
4769 7880 1.568597 AGGCCCCATGCTGTACATTTA 59.431 47.619 0.00 0.00 36.64 1.40
4770 7881 2.024464 AGGCCCCATGCTGTACATTTAA 60.024 45.455 0.00 0.00 36.64 1.52
4771 7882 2.362077 GGCCCCATGCTGTACATTTAAG 59.638 50.000 0.00 0.00 36.64 1.85
4772 7883 3.287222 GCCCCATGCTGTACATTTAAGA 58.713 45.455 0.00 0.00 36.64 2.10
4773 7884 3.699038 GCCCCATGCTGTACATTTAAGAA 59.301 43.478 0.00 0.00 36.64 2.52
4774 7885 4.159506 GCCCCATGCTGTACATTTAAGAAA 59.840 41.667 0.00 0.00 36.64 2.52
4775 7886 5.650543 CCCCATGCTGTACATTTAAGAAAC 58.349 41.667 0.00 0.00 36.64 2.78
4776 7887 5.184864 CCCCATGCTGTACATTTAAGAAACA 59.815 40.000 0.00 0.00 36.64 2.83
4777 7888 6.324819 CCCATGCTGTACATTTAAGAAACAG 58.675 40.000 0.00 0.00 36.64 3.16
4778 7889 6.324819 CCATGCTGTACATTTAAGAAACAGG 58.675 40.000 0.00 0.00 36.64 4.00
4779 7890 6.071952 CCATGCTGTACATTTAAGAAACAGGT 60.072 38.462 0.00 0.00 36.64 4.00
4780 7891 6.312399 TGCTGTACATTTAAGAAACAGGTG 57.688 37.500 0.00 0.00 38.36 4.00
4781 7892 5.240623 TGCTGTACATTTAAGAAACAGGTGG 59.759 40.000 0.00 0.00 38.36 4.61
4782 7893 5.335661 GCTGTACATTTAAGAAACAGGTGGG 60.336 44.000 0.00 0.00 38.36 4.61
4783 7894 4.521256 TGTACATTTAAGAAACAGGTGGGC 59.479 41.667 0.00 0.00 0.00 5.36
4784 7895 3.844640 ACATTTAAGAAACAGGTGGGCT 58.155 40.909 0.00 0.00 0.00 5.19
4785 7896 3.573967 ACATTTAAGAAACAGGTGGGCTG 59.426 43.478 0.00 0.00 0.00 4.85
4786 7897 2.286365 TTAAGAAACAGGTGGGCTGG 57.714 50.000 0.00 0.00 0.00 4.85
4787 7898 0.251165 TAAGAAACAGGTGGGCTGGC 60.251 55.000 0.00 0.00 0.00 4.85
4788 7899 3.365265 GAAACAGGTGGGCTGGCG 61.365 66.667 0.00 0.00 0.00 5.69
4789 7900 3.842925 GAAACAGGTGGGCTGGCGA 62.843 63.158 0.00 0.00 0.00 5.54
4790 7901 4.643387 AACAGGTGGGCTGGCGAC 62.643 66.667 7.84 7.84 0.00 5.19
4802 7913 4.855105 GGCGACAGGCACATGATA 57.145 55.556 0.00 0.00 46.16 2.15
4803 7914 2.311294 GGCGACAGGCACATGATAC 58.689 57.895 0.00 0.00 46.16 2.24
4804 7915 0.179073 GGCGACAGGCACATGATACT 60.179 55.000 0.00 0.00 46.16 2.12
4805 7916 0.933097 GCGACAGGCACATGATACTG 59.067 55.000 0.00 6.73 42.87 2.74
4806 7917 0.933097 CGACAGGCACATGATACTGC 59.067 55.000 0.00 0.00 34.40 4.40
4807 7918 1.472201 CGACAGGCACATGATACTGCT 60.472 52.381 0.00 0.00 34.40 4.24
4808 7919 1.938577 GACAGGCACATGATACTGCTG 59.061 52.381 0.00 2.23 34.40 4.41
4809 7920 0.661552 CAGGCACATGATACTGCTGC 59.338 55.000 0.00 0.00 33.63 5.25
4810 7921 0.812811 AGGCACATGATACTGCTGCG 60.813 55.000 0.00 0.00 33.63 5.18
4811 7922 1.010350 GCACATGATACTGCTGCGC 60.010 57.895 0.00 0.00 0.00 6.09
4812 7923 1.645455 CACATGATACTGCTGCGCC 59.355 57.895 4.18 0.00 0.00 6.53
4813 7924 0.812811 CACATGATACTGCTGCGCCT 60.813 55.000 4.18 0.00 0.00 5.52
4814 7925 0.107508 ACATGATACTGCTGCGCCTT 60.108 50.000 4.18 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.698380 TCTGAAATACTCCTACCAGTGAAAC 58.302 40.000 0.00 0.00 0.00 2.78
2 3 6.497259 ACTCTGAAATACTCCTACCAGTGAAA 59.503 38.462 0.00 0.00 0.00 2.69
3 4 6.017192 ACTCTGAAATACTCCTACCAGTGAA 58.983 40.000 0.00 0.00 0.00 3.18
4 5 5.419155 CACTCTGAAATACTCCTACCAGTGA 59.581 44.000 0.00 0.00 31.13 3.41
5 6 5.186021 ACACTCTGAAATACTCCTACCAGTG 59.814 44.000 0.00 0.00 34.88 3.66
6 7 5.334421 ACACTCTGAAATACTCCTACCAGT 58.666 41.667 0.00 0.00 0.00 4.00
7 8 5.449314 CGACACTCTGAAATACTCCTACCAG 60.449 48.000 0.00 0.00 0.00 4.00
8 9 4.398358 CGACACTCTGAAATACTCCTACCA 59.602 45.833 0.00 0.00 0.00 3.25
9 10 4.202030 CCGACACTCTGAAATACTCCTACC 60.202 50.000 0.00 0.00 0.00 3.18
10 11 4.639310 TCCGACACTCTGAAATACTCCTAC 59.361 45.833 0.00 0.00 0.00 3.18
24 25 4.804665 GGCTTAAATCTTACTCCGACACTC 59.195 45.833 0.00 0.00 0.00 3.51
27 28 4.501071 GTGGCTTAAATCTTACTCCGACA 58.499 43.478 0.00 0.00 0.00 4.35
50 51 0.819666 GAGGGCGGTGGGATTTCATC 60.820 60.000 0.00 0.00 0.00 2.92
115 116 1.453197 CGCAAATACCACCCTCCCC 60.453 63.158 0.00 0.00 0.00 4.81
133 134 0.532115 AAAATGCCATGCGAAGGTCC 59.468 50.000 0.00 0.00 0.00 4.46
137 138 4.090354 CACAACTAAAAATGCCATGCGAAG 59.910 41.667 0.00 0.00 0.00 3.79
141 142 3.432933 CCACACAACTAAAAATGCCATGC 59.567 43.478 0.00 0.00 0.00 4.06
168 170 1.250840 AAGAAATTGCCACCTCGCCC 61.251 55.000 0.00 0.00 0.00 6.13
171 173 1.470098 CCTGAAGAAATTGCCACCTCG 59.530 52.381 0.00 0.00 0.00 4.63
181 183 6.515272 AAATGTTATGTCGCCTGAAGAAAT 57.485 33.333 0.00 0.00 0.00 2.17
207 209 2.289444 ACGAAAATTGCCTTCTCGGAGA 60.289 45.455 2.97 2.97 33.89 3.71
236 238 2.309528 AATAAGATCAAGCGACGGCA 57.690 45.000 0.00 0.00 43.41 5.69
257 259 8.306038 CCATCTTTGATGGAATTTTGAGTTGTA 58.694 33.333 18.79 0.00 41.64 2.41
268 270 6.110707 GCAAATGAACCATCTTTGATGGAAT 58.889 36.000 27.27 17.43 41.64 3.01
270 272 4.081531 GGCAAATGAACCATCTTTGATGGA 60.082 41.667 27.27 10.37 41.64 3.41
275 277 3.007182 AGGTGGCAAATGAACCATCTTTG 59.993 43.478 0.00 0.00 45.33 2.77
346 348 5.935789 CCAGTGATTGCATTTTCCAAAGATT 59.064 36.000 0.00 0.00 0.00 2.40
415 417 5.422331 TCATCTATTTTGGAACGGAGAGAGT 59.578 40.000 0.00 0.00 0.00 3.24
416 418 5.751028 GTCATCTATTTTGGAACGGAGAGAG 59.249 44.000 0.00 0.00 0.00 3.20
417 419 5.422331 AGTCATCTATTTTGGAACGGAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
418 420 5.665459 AGTCATCTATTTTGGAACGGAGAG 58.335 41.667 0.00 0.00 0.00 3.20
419 421 5.186992 TGAGTCATCTATTTTGGAACGGAGA 59.813 40.000 0.00 0.00 0.00 3.71
420 422 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
421 423 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
422 424 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
423 425 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
466 468 9.667107 TCCGTTCTAAAATAGATGACTCAATTT 57.333 29.630 0.00 0.00 34.22 1.82
467 469 9.319143 CTCCGTTCTAAAATAGATGACTCAATT 57.681 33.333 0.00 0.00 34.22 2.32
468 470 7.928706 CCTCCGTTCTAAAATAGATGACTCAAT 59.071 37.037 0.00 0.00 34.22 2.57
469 471 7.265673 CCTCCGTTCTAAAATAGATGACTCAA 58.734 38.462 0.00 0.00 34.22 3.02
470 472 6.183360 CCCTCCGTTCTAAAATAGATGACTCA 60.183 42.308 0.00 0.00 34.22 3.41
471 473 6.040616 TCCCTCCGTTCTAAAATAGATGACTC 59.959 42.308 0.00 0.00 34.22 3.36
472 474 5.897824 TCCCTCCGTTCTAAAATAGATGACT 59.102 40.000 0.00 0.00 34.22 3.41
473 475 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
474 476 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
475 477 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
476 478 6.016443 CGTACTCCCTCCGTTCTAAAATAGAT 60.016 42.308 0.00 0.00 34.22 1.98
477 479 5.297776 CGTACTCCCTCCGTTCTAAAATAGA 59.702 44.000 0.00 0.00 0.00 1.98
478 480 5.067023 ACGTACTCCCTCCGTTCTAAAATAG 59.933 44.000 0.00 0.00 0.00 1.73
479 481 4.949856 ACGTACTCCCTCCGTTCTAAAATA 59.050 41.667 0.00 0.00 0.00 1.40
480 482 3.766051 ACGTACTCCCTCCGTTCTAAAAT 59.234 43.478 0.00 0.00 0.00 1.82
481 483 3.157087 ACGTACTCCCTCCGTTCTAAAA 58.843 45.455 0.00 0.00 0.00 1.52
482 484 2.749621 GACGTACTCCCTCCGTTCTAAA 59.250 50.000 0.00 0.00 34.51 1.85
483 485 2.290260 TGACGTACTCCCTCCGTTCTAA 60.290 50.000 0.00 0.00 34.51 2.10
484 486 1.278985 TGACGTACTCCCTCCGTTCTA 59.721 52.381 0.00 0.00 34.51 2.10
485 487 0.037303 TGACGTACTCCCTCCGTTCT 59.963 55.000 0.00 0.00 34.51 3.01
486 488 0.169894 GTGACGTACTCCCTCCGTTC 59.830 60.000 0.00 0.00 34.51 3.95
487 489 0.251077 AGTGACGTACTCCCTCCGTT 60.251 55.000 0.00 0.00 33.17 4.44
488 490 0.251077 AAGTGACGTACTCCCTCCGT 60.251 55.000 0.00 0.00 39.18 4.69
489 491 0.170561 CAAGTGACGTACTCCCTCCG 59.829 60.000 0.00 0.00 39.18 4.63
490 492 1.201880 GTCAAGTGACGTACTCCCTCC 59.798 57.143 0.00 0.00 39.18 4.30
491 493 2.633199 GTCAAGTGACGTACTCCCTC 57.367 55.000 0.00 0.00 39.18 4.30
507 509 2.268762 TGCAACATTGGCTAGTGTCA 57.731 45.000 0.00 0.00 0.00 3.58
513 515 2.284754 TGACCTTGCAACATTGGCTA 57.715 45.000 0.00 0.00 0.00 3.93
565 567 2.577593 GACCACACGGCTAGGGTC 59.422 66.667 0.00 0.00 42.60 4.46
608 611 6.068670 CCTCAGGGAAAAAGAAAAAGGAGTA 58.931 40.000 0.00 0.00 33.58 2.59
609 612 4.895889 CCTCAGGGAAAAAGAAAAAGGAGT 59.104 41.667 0.00 0.00 33.58 3.85
610 613 5.140454 TCCTCAGGGAAAAAGAAAAAGGAG 58.860 41.667 0.00 0.00 38.93 3.69
650 653 3.532155 GAGCCGATGGACCGAGCT 61.532 66.667 0.00 0.00 38.24 4.09
841 855 4.349503 ATGCCTGACGCTGGCCAA 62.350 61.111 7.01 7.45 45.86 4.52
890 911 2.111384 AGTGTGACAGTTGAGTGGAGT 58.889 47.619 0.00 0.00 0.00 3.85
899 925 1.227853 GCCGGGAAGTGTGACAGTT 60.228 57.895 5.16 5.16 0.00 3.16
1061 1092 0.615331 GGAGGAGCATGTGGTCAAGA 59.385 55.000 13.49 0.00 43.82 3.02
1079 1111 2.667473 ATTACCAGAAGACGAACCGG 57.333 50.000 0.00 0.00 0.00 5.28
1081 1113 5.717119 TCAAGTATTACCAGAAGACGAACC 58.283 41.667 0.00 0.00 0.00 3.62
1139 1176 1.439679 CACTCGGCTTCCACTTAACC 58.560 55.000 0.00 0.00 0.00 2.85
1218 1260 5.872617 TCAAAAGAACATATTCGTCGGACAT 59.127 36.000 9.10 0.00 40.04 3.06
1291 1392 7.336931 TCTCTCTTTATTTTAGCCACCATTGAC 59.663 37.037 0.00 0.00 0.00 3.18
1489 1590 0.537188 AAGGCCTTGATGACGTCGAT 59.463 50.000 19.73 5.64 0.00 3.59
1633 1734 2.034685 CGACGGTGATGTAGGTGATGAT 59.965 50.000 0.00 0.00 0.00 2.45
1659 1760 1.456705 GGGGCTCTCGGTGATCTCT 60.457 63.158 0.00 0.00 0.00 3.10
1752 1853 2.679059 CGTGCTGGAGATGGTGATCTTT 60.679 50.000 0.00 0.00 39.19 2.52
2139 2240 0.976641 TCTGAGCATTGTCCGGAGTT 59.023 50.000 3.06 0.00 0.00 3.01
2490 2591 1.074951 GTAGCAGGGTTGGCTTGGT 59.925 57.895 0.00 0.00 42.62 3.67
2671 2772 5.928839 AGATAGTATAAGGTGCAAGCATTCG 59.071 40.000 0.00 0.00 36.26 3.34
2690 2794 7.384660 CCAAAGCTAGTAATGAAGCAGAGATAG 59.615 40.741 0.00 0.00 0.00 2.08
2709 2813 6.155221 TCAGTATTCAGACTACATCCAAAGCT 59.845 38.462 1.10 0.00 0.00 3.74
2731 2835 5.183904 AGGCTTACAATTGGCTAGTTTTCAG 59.816 40.000 10.83 0.00 37.32 3.02
2757 2861 4.631377 GTCAGCACATATTGTCTGCAAGTA 59.369 41.667 0.00 0.00 38.10 2.24
2843 2951 4.697514 TGTCCAGAAATACAGCTAGCATC 58.302 43.478 18.83 5.14 0.00 3.91
3032 3142 0.248843 AAGCGGCAGAGGAGAGAAAG 59.751 55.000 1.45 0.00 0.00 2.62
3063 3173 8.710239 TGCTCATACCATTTGTCTAACCTAATA 58.290 33.333 0.00 0.00 0.00 0.98
3064 3174 7.573710 TGCTCATACCATTTGTCTAACCTAAT 58.426 34.615 0.00 0.00 0.00 1.73
3082 3193 9.216117 CATATCTCAAAACTGATGATGCTCATA 57.784 33.333 0.00 0.00 37.20 2.15
3310 3432 9.095065 CACCCATCGGTAAGCTATATATTAAAC 57.905 37.037 0.00 0.00 42.04 2.01
3376 3520 3.649073 CAACACACGAGGATCACAACTA 58.351 45.455 0.00 0.00 33.17 2.24
3537 3683 2.553602 CAAGTGTCATAACCTGCAAGCA 59.446 45.455 0.00 0.00 0.00 3.91
3591 3740 3.012518 ACATTTGCAAAGAGAGATCGGG 58.987 45.455 18.19 0.00 0.00 5.14
3740 3889 1.234821 GATTGGGCAAACAGTGACGA 58.765 50.000 0.00 0.00 35.23 4.20
3840 3990 1.472878 CTCTCACCTTCGATCCGAACA 59.527 52.381 0.00 0.00 41.05 3.18
3896 4046 1.143889 TGCCACCTTTCACCACACATA 59.856 47.619 0.00 0.00 0.00 2.29
3949 4102 1.927210 CGCAGCGATGTACATCCAC 59.073 57.895 26.33 19.47 34.40 4.02
4095 4248 4.797604 GCAGCATGAATACTGATACGACCT 60.798 45.833 0.00 0.00 39.69 3.85
4096 4249 3.430218 GCAGCATGAATACTGATACGACC 59.570 47.826 0.00 0.00 39.69 4.79
4098 4251 3.308530 CGCAGCATGAATACTGATACGA 58.691 45.455 0.00 0.00 39.69 3.43
4099 4252 3.695005 CGCAGCATGAATACTGATACG 57.305 47.619 0.00 0.00 39.69 3.06
4115 4268 2.461110 GGTTACATCACCGGCGCAG 61.461 63.158 10.83 4.65 0.00 5.18
4117 4270 2.125269 AGGTTACATCACCGGCGC 60.125 61.111 0.00 0.00 42.33 6.53
4118 4271 0.179084 ATGAGGTTACATCACCGGCG 60.179 55.000 0.66 0.00 42.33 6.46
4119 4272 1.583054 GATGAGGTTACATCACCGGC 58.417 55.000 0.66 0.00 44.00 6.13
4120 4273 1.136305 ACGATGAGGTTACATCACCGG 59.864 52.381 18.02 0.00 44.57 5.28
4121 4274 2.579207 ACGATGAGGTTACATCACCG 57.421 50.000 12.42 12.42 44.57 4.94
4122 4275 4.250464 TGAAACGATGAGGTTACATCACC 58.750 43.478 0.66 0.00 44.57 4.02
4123 4276 6.092122 TGAATGAAACGATGAGGTTACATCAC 59.908 38.462 0.66 0.00 44.57 3.06
4124 4277 6.092122 GTGAATGAAACGATGAGGTTACATCA 59.908 38.462 1.27 1.27 44.57 3.07
4125 4278 6.456988 GGTGAATGAAACGATGAGGTTACATC 60.457 42.308 0.00 0.00 41.98 3.06
4126 4279 5.354234 GGTGAATGAAACGATGAGGTTACAT 59.646 40.000 0.00 0.00 0.00 2.29
4184 4368 9.326489 AGTAGAAGCCCACATAATTCAGATATA 57.674 33.333 0.00 0.00 0.00 0.86
4185 4369 8.212259 AGTAGAAGCCCACATAATTCAGATAT 57.788 34.615 0.00 0.00 0.00 1.63
4218 4402 3.996480 AGCTAACAGTTGAAGTGGAGTC 58.004 45.455 4.87 0.00 0.00 3.36
4238 4445 6.401153 GGTGTATCGAAGCAAAACTAGTGAAG 60.401 42.308 0.00 0.00 0.00 3.02
4241 4448 4.092968 GGGTGTATCGAAGCAAAACTAGTG 59.907 45.833 0.00 0.00 0.00 2.74
4322 7399 8.913487 ATCTATTCAATACATGTGATCTGCAA 57.087 30.769 9.11 0.00 0.00 4.08
4413 7499 7.499232 GGCATAGTGGAGAACTAACATAACAAT 59.501 37.037 0.00 0.00 44.57 2.71
4503 7610 7.519488 CGGATACATGAGAAATGAGAATTGTGG 60.519 40.741 0.00 0.00 0.00 4.17
4510 7617 5.812127 CACAACGGATACATGAGAAATGAGA 59.188 40.000 0.00 0.00 0.00 3.27
4511 7618 5.007039 CCACAACGGATACATGAGAAATGAG 59.993 44.000 0.00 0.00 36.56 2.90
4512 7619 4.875536 CCACAACGGATACATGAGAAATGA 59.124 41.667 0.00 0.00 36.56 2.57
4513 7620 4.635765 ACCACAACGGATACATGAGAAATG 59.364 41.667 0.00 0.00 38.63 2.32
4514 7621 4.843728 ACCACAACGGATACATGAGAAAT 58.156 39.130 0.00 0.00 38.63 2.17
4515 7622 4.280436 ACCACAACGGATACATGAGAAA 57.720 40.909 0.00 0.00 38.63 2.52
4516 7623 3.973206 ACCACAACGGATACATGAGAA 57.027 42.857 0.00 0.00 38.63 2.87
4517 7624 3.007506 ACAACCACAACGGATACATGAGA 59.992 43.478 0.00 0.00 38.63 3.27
4518 7625 3.334691 ACAACCACAACGGATACATGAG 58.665 45.455 0.00 0.00 38.63 2.90
4519 7626 3.410631 ACAACCACAACGGATACATGA 57.589 42.857 0.00 0.00 38.63 3.07
4520 7627 4.250464 ACTACAACCACAACGGATACATG 58.750 43.478 0.00 0.00 38.63 3.21
4521 7628 4.501071 GACTACAACCACAACGGATACAT 58.499 43.478 0.00 0.00 38.63 2.29
4522 7629 3.306225 GGACTACAACCACAACGGATACA 60.306 47.826 0.00 0.00 38.63 2.29
4523 7630 3.056322 AGGACTACAACCACAACGGATAC 60.056 47.826 0.00 0.00 38.63 2.24
4524 7631 3.056393 CAGGACTACAACCACAACGGATA 60.056 47.826 0.00 0.00 38.63 2.59
4525 7632 1.975680 AGGACTACAACCACAACGGAT 59.024 47.619 0.00 0.00 38.63 4.18
4526 7633 1.069513 CAGGACTACAACCACAACGGA 59.930 52.381 0.00 0.00 38.63 4.69
4527 7634 1.202604 ACAGGACTACAACCACAACGG 60.203 52.381 0.00 0.00 42.50 4.44
4528 7635 1.864711 CACAGGACTACAACCACAACG 59.135 52.381 0.00 0.00 0.00 4.10
4542 7649 5.424252 CCCCATACTTAACTTCTACACAGGA 59.576 44.000 0.00 0.00 0.00 3.86
4566 7673 6.677781 TTGCATCTTTTACATAGGCTACAC 57.322 37.500 0.00 0.00 0.00 2.90
4613 7724 0.998727 GCCTCTGCAACGCTTTTTCG 60.999 55.000 0.00 0.00 37.47 3.46
4614 7725 0.664466 GGCCTCTGCAACGCTTTTTC 60.664 55.000 0.00 0.00 40.13 2.29
4615 7726 1.363807 GGCCTCTGCAACGCTTTTT 59.636 52.632 0.00 0.00 40.13 1.94
4616 7727 2.908073 CGGCCTCTGCAACGCTTTT 61.908 57.895 0.00 0.00 40.13 2.27
4617 7728 3.357079 CGGCCTCTGCAACGCTTT 61.357 61.111 0.00 0.00 40.13 3.51
4621 7732 4.379243 AGACCGGCCTCTGCAACG 62.379 66.667 0.00 0.00 40.13 4.10
4622 7733 2.743928 CAGACCGGCCTCTGCAAC 60.744 66.667 8.93 0.00 40.13 4.17
4626 7737 4.463879 CCTGCAGACCGGCCTCTG 62.464 72.222 17.39 15.97 40.73 3.35
4627 7738 3.602075 TACCTGCAGACCGGCCTCT 62.602 63.158 17.39 0.00 0.00 3.69
4628 7739 3.075005 TACCTGCAGACCGGCCTC 61.075 66.667 17.39 0.00 0.00 4.70
4629 7740 3.077556 CTACCTGCAGACCGGCCT 61.078 66.667 17.39 0.00 0.00 5.19
4630 7741 4.840005 GCTACCTGCAGACCGGCC 62.840 72.222 17.39 0.00 42.31 6.13
4631 7742 3.724914 GAGCTACCTGCAGACCGGC 62.725 68.421 17.39 13.43 45.94 6.13
4632 7743 2.496817 GAGCTACCTGCAGACCGG 59.503 66.667 17.39 0.00 45.94 5.28
4633 7744 2.496817 GGAGCTACCTGCAGACCG 59.503 66.667 17.39 0.15 45.94 4.79
4642 7753 1.057471 GGGGTGGATTAGGAGCTACC 58.943 60.000 0.00 0.00 41.60 3.18
4643 7754 0.680061 CGGGGTGGATTAGGAGCTAC 59.320 60.000 0.00 0.00 0.00 3.58
4644 7755 1.119574 GCGGGGTGGATTAGGAGCTA 61.120 60.000 0.00 0.00 0.00 3.32
4645 7756 2.444256 GCGGGGTGGATTAGGAGCT 61.444 63.158 0.00 0.00 0.00 4.09
4646 7757 2.111251 GCGGGGTGGATTAGGAGC 59.889 66.667 0.00 0.00 0.00 4.70
4647 7758 2.829592 GGCGGGGTGGATTAGGAG 59.170 66.667 0.00 0.00 0.00 3.69
4648 7759 3.158648 CGGCGGGGTGGATTAGGA 61.159 66.667 0.00 0.00 0.00 2.94
4649 7760 2.737881 TTCGGCGGGGTGGATTAGG 61.738 63.158 7.21 0.00 0.00 2.69
4650 7761 1.523032 GTTCGGCGGGGTGGATTAG 60.523 63.158 7.21 0.00 0.00 1.73
4651 7762 1.839148 TTGTTCGGCGGGGTGGATTA 61.839 55.000 7.21 0.00 0.00 1.75
4652 7763 3.198953 TTGTTCGGCGGGGTGGATT 62.199 57.895 7.21 0.00 0.00 3.01
4653 7764 3.622060 CTTGTTCGGCGGGGTGGAT 62.622 63.158 7.21 0.00 0.00 3.41
4654 7765 4.323477 CTTGTTCGGCGGGGTGGA 62.323 66.667 7.21 0.00 0.00 4.02
4657 7768 4.344865 ATGCTTGTTCGGCGGGGT 62.345 61.111 7.21 0.00 0.00 4.95
4658 7769 3.814268 CATGCTTGTTCGGCGGGG 61.814 66.667 7.21 0.00 0.00 5.73
4659 7770 3.814268 CCATGCTTGTTCGGCGGG 61.814 66.667 7.21 0.00 0.00 6.13
4660 7771 3.814268 CCCATGCTTGTTCGGCGG 61.814 66.667 7.21 0.00 0.00 6.13
4661 7772 3.814268 CCCCATGCTTGTTCGGCG 61.814 66.667 0.00 0.00 0.00 6.46
4662 7773 1.754234 ATCCCCATGCTTGTTCGGC 60.754 57.895 0.00 0.00 0.00 5.54
4663 7774 2.109431 CATCCCCATGCTTGTTCGG 58.891 57.895 0.00 0.00 0.00 4.30
4677 7788 3.814268 ATGTTGGCGCACGCATCC 61.814 61.111 17.69 3.87 44.11 3.51
4678 7789 1.976478 TACATGTTGGCGCACGCATC 61.976 55.000 17.69 6.85 44.11 3.91
4679 7790 1.375853 ATACATGTTGGCGCACGCAT 61.376 50.000 17.69 6.88 44.11 4.73
4680 7791 1.581727 AATACATGTTGGCGCACGCA 61.582 50.000 17.69 4.38 44.11 5.24
4681 7792 1.133363 CAATACATGTTGGCGCACGC 61.133 55.000 10.83 6.46 41.06 5.34
4682 7793 1.133363 GCAATACATGTTGGCGCACG 61.133 55.000 10.83 0.00 0.00 5.34
4683 7794 0.109365 TGCAATACATGTTGGCGCAC 60.109 50.000 10.83 0.00 0.00 5.34
4684 7795 0.600057 TTGCAATACATGTTGGCGCA 59.400 45.000 10.83 5.73 0.00 6.09
4685 7796 1.925229 ATTGCAATACATGTTGGCGC 58.075 45.000 11.02 0.00 0.00 6.53
4686 7797 3.483901 GCAAATTGCAATACATGTTGGCG 60.484 43.478 13.39 0.00 44.26 5.69
4687 7798 4.006026 GCAAATTGCAATACATGTTGGC 57.994 40.909 13.39 6.39 44.26 4.52
4708 7819 2.996631 ACTATCTTTCAGGCAAGGCTG 58.003 47.619 16.62 16.62 0.00 4.85
4709 7820 6.270927 TGATATACTATCTTTCAGGCAAGGCT 59.729 38.462 0.00 0.00 0.00 4.58
4710 7821 6.370166 GTGATATACTATCTTTCAGGCAAGGC 59.630 42.308 0.00 0.00 0.00 4.35
4711 7822 6.876257 GGTGATATACTATCTTTCAGGCAAGG 59.124 42.308 0.00 0.00 0.00 3.61
4712 7823 6.587990 CGGTGATATACTATCTTTCAGGCAAG 59.412 42.308 0.00 0.00 0.00 4.01
4713 7824 6.041637 ACGGTGATATACTATCTTTCAGGCAA 59.958 38.462 0.00 0.00 0.00 4.52
4714 7825 5.538813 ACGGTGATATACTATCTTTCAGGCA 59.461 40.000 0.00 0.00 0.00 4.75
4715 7826 6.026947 ACGGTGATATACTATCTTTCAGGC 57.973 41.667 0.00 0.00 0.00 4.85
4726 7837 8.738106 GCCTACTCTAAAATACGGTGATATACT 58.262 37.037 0.00 0.00 0.00 2.12
4727 7838 7.972832 GGCCTACTCTAAAATACGGTGATATAC 59.027 40.741 0.00 0.00 0.00 1.47
4728 7839 7.123247 GGGCCTACTCTAAAATACGGTGATATA 59.877 40.741 0.84 0.00 0.00 0.86
4729 7840 6.070938 GGGCCTACTCTAAAATACGGTGATAT 60.071 42.308 0.84 0.00 0.00 1.63
4730 7841 5.244626 GGGCCTACTCTAAAATACGGTGATA 59.755 44.000 0.84 0.00 0.00 2.15
4731 7842 4.040095 GGGCCTACTCTAAAATACGGTGAT 59.960 45.833 0.84 0.00 0.00 3.06
4732 7843 3.385755 GGGCCTACTCTAAAATACGGTGA 59.614 47.826 0.84 0.00 0.00 4.02
4733 7844 3.493873 GGGGCCTACTCTAAAATACGGTG 60.494 52.174 0.84 0.00 0.00 4.94
4734 7845 2.702478 GGGGCCTACTCTAAAATACGGT 59.298 50.000 0.84 0.00 0.00 4.83
4735 7846 2.701951 TGGGGCCTACTCTAAAATACGG 59.298 50.000 0.84 0.00 0.00 4.02
4736 7847 4.315803 CATGGGGCCTACTCTAAAATACG 58.684 47.826 0.84 0.00 0.00 3.06
4737 7848 4.072839 GCATGGGGCCTACTCTAAAATAC 58.927 47.826 0.84 0.00 36.11 1.89
4738 7849 3.980698 AGCATGGGGCCTACTCTAAAATA 59.019 43.478 0.84 0.00 46.50 1.40
4739 7850 2.785857 AGCATGGGGCCTACTCTAAAAT 59.214 45.455 0.84 0.00 46.50 1.82
4740 7851 2.092429 CAGCATGGGGCCTACTCTAAAA 60.092 50.000 0.84 0.00 46.50 1.52
4741 7852 1.490490 CAGCATGGGGCCTACTCTAAA 59.510 52.381 0.84 0.00 46.50 1.85
4742 7853 1.131638 CAGCATGGGGCCTACTCTAA 58.868 55.000 0.84 0.00 46.50 2.10
4743 7854 0.031111 ACAGCATGGGGCCTACTCTA 60.031 55.000 0.84 0.00 46.50 2.43
4744 7855 0.031111 TACAGCATGGGGCCTACTCT 60.031 55.000 0.84 0.00 46.50 3.24
4745 7856 0.106894 GTACAGCATGGGGCCTACTC 59.893 60.000 0.84 0.00 46.50 2.59
4746 7857 0.620410 TGTACAGCATGGGGCCTACT 60.620 55.000 0.84 0.00 46.50 2.57
4747 7858 0.474184 ATGTACAGCATGGGGCCTAC 59.526 55.000 0.84 0.00 46.50 3.18
4748 7859 1.221635 AATGTACAGCATGGGGCCTA 58.778 50.000 0.84 0.00 46.50 3.93
4749 7860 0.336048 AAATGTACAGCATGGGGCCT 59.664 50.000 0.84 0.00 46.50 5.19
4750 7861 2.065899 TAAATGTACAGCATGGGGCC 57.934 50.000 0.33 0.00 46.50 5.80
4751 7862 3.287222 TCTTAAATGTACAGCATGGGGC 58.713 45.455 0.33 0.00 43.62 5.80
4752 7863 5.184864 TGTTTCTTAAATGTACAGCATGGGG 59.815 40.000 0.33 0.00 43.62 4.96
4753 7864 6.266168 TGTTTCTTAAATGTACAGCATGGG 57.734 37.500 0.33 0.00 43.62 4.00
4754 7865 6.071952 ACCTGTTTCTTAAATGTACAGCATGG 60.072 38.462 0.33 0.00 43.62 3.66
4755 7866 6.803320 CACCTGTTTCTTAAATGTACAGCATG 59.197 38.462 0.33 0.00 46.00 4.06
4756 7867 6.071952 CCACCTGTTTCTTAAATGTACAGCAT 60.072 38.462 0.33 0.00 40.03 3.79
4757 7868 5.240623 CCACCTGTTTCTTAAATGTACAGCA 59.759 40.000 0.33 0.00 35.93 4.41
4758 7869 5.335661 CCCACCTGTTTCTTAAATGTACAGC 60.336 44.000 0.33 0.00 35.93 4.40
4759 7870 5.335661 GCCCACCTGTTTCTTAAATGTACAG 60.336 44.000 0.33 0.00 36.77 2.74
4760 7871 4.521256 GCCCACCTGTTTCTTAAATGTACA 59.479 41.667 0.00 0.00 0.00 2.90
4761 7872 4.765339 AGCCCACCTGTTTCTTAAATGTAC 59.235 41.667 0.00 0.00 0.00 2.90
4762 7873 4.764823 CAGCCCACCTGTTTCTTAAATGTA 59.235 41.667 0.00 0.00 36.79 2.29
4763 7874 3.573967 CAGCCCACCTGTTTCTTAAATGT 59.426 43.478 0.00 0.00 36.79 2.71
4764 7875 3.056607 CCAGCCCACCTGTTTCTTAAATG 60.057 47.826 0.00 0.00 40.06 2.32
4765 7876 3.165071 CCAGCCCACCTGTTTCTTAAAT 58.835 45.455 0.00 0.00 40.06 1.40
4766 7877 2.593026 CCAGCCCACCTGTTTCTTAAA 58.407 47.619 0.00 0.00 40.06 1.52
4767 7878 1.821666 GCCAGCCCACCTGTTTCTTAA 60.822 52.381 0.00 0.00 40.06 1.85
4768 7879 0.251165 GCCAGCCCACCTGTTTCTTA 60.251 55.000 0.00 0.00 40.06 2.10
4769 7880 1.531602 GCCAGCCCACCTGTTTCTT 60.532 57.895 0.00 0.00 40.06 2.52
4770 7881 2.116125 GCCAGCCCACCTGTTTCT 59.884 61.111 0.00 0.00 40.06 2.52
4771 7882 3.365265 CGCCAGCCCACCTGTTTC 61.365 66.667 0.00 0.00 40.06 2.78
4772 7883 3.884774 TCGCCAGCCCACCTGTTT 61.885 61.111 0.00 0.00 40.06 2.83
4773 7884 4.643387 GTCGCCAGCCCACCTGTT 62.643 66.667 0.00 0.00 40.06 3.16
4782 7893 3.807538 CATGTGCCTGTCGCCAGC 61.808 66.667 0.00 0.00 37.38 4.85
4783 7894 0.179076 TATCATGTGCCTGTCGCCAG 60.179 55.000 0.00 0.00 38.50 4.85
4784 7895 0.461870 GTATCATGTGCCTGTCGCCA 60.462 55.000 0.00 0.00 36.24 5.69
4785 7896 0.179073 AGTATCATGTGCCTGTCGCC 60.179 55.000 0.00 0.00 36.24 5.54
4786 7897 0.933097 CAGTATCATGTGCCTGTCGC 59.067 55.000 0.00 0.00 38.31 5.19
4787 7898 0.933097 GCAGTATCATGTGCCTGTCG 59.067 55.000 0.00 0.00 33.29 4.35
4788 7899 1.938577 CAGCAGTATCATGTGCCTGTC 59.061 52.381 2.63 0.56 40.81 3.51
4789 7900 2.015588 GCAGCAGTATCATGTGCCTGT 61.016 52.381 2.63 0.00 40.81 4.00
4790 7901 0.661552 GCAGCAGTATCATGTGCCTG 59.338 55.000 2.63 3.72 40.81 4.85
4791 7902 0.812811 CGCAGCAGTATCATGTGCCT 60.813 55.000 2.63 0.00 40.81 4.75
4792 7903 1.645455 CGCAGCAGTATCATGTGCC 59.355 57.895 2.63 0.00 40.81 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.