>input_sequence_27519
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----------------------------------------------------------------------ATGGCGCGGC
GGCATGCGGCGGCGGTTTCCGCGTTCCTCTTCTTGCTGCTCGTGGGTGAGTTCTTGA-CCACATGCTCCTCCGGTTCGTC
TTCTGGTAA-----TACTTGATAGTAGTGGTTGCCCTTTTGGAATGTGAAATCTTGGTTAAGTGGAAGCCGAGTGCTAGA
TGCCTTGCTTCCCGCTGGGTGCTAGCTA-----CCTGCAATGCGTATGGTACCGTGATGATGTCCGACGAATATGTTCTT
TTGAC--------------------------------------------------------CAGATTGTTTGTTTTTCTG
GCATGGAATTAA---AATACTAAATGGACGCGTCAATGGTGGCTAAAATAAAGAGAGATTGCGCGCCCCTGAATCCTGAT
GTGGGGCTTTTGCACTTGCAGGGCACTGCCACGGCGGCAAGACCGGCATCTGCTACGGCCGCAACGCCGACGACCTGCCG
GGGCCCGACAAGGTGGCGCAGCTCATCCGGCAGCAGTCCATCAAGTACGTGCGCATCTACGACACCAACATCGACGTCAT
CAAGGCCTTCGCCAACACCAGCGTCGAGCTCATGGTCGGCGTCCCCAACGCCGACCTCCTCGCCTTCTCGCAGTACCAGT
CCAACGTCGACACCTGGCTCAAGAACAGCATCCTCCCCTACTACCCGGCCACCATCATCACCTACATCACCGTCGGCGCA
GAGATCACCGAGAGCCCCATCAACGTCTCCGCCCTCGTCGTGCCGGCCATGCGCAATGTGCACGCCGCCCTCAAGAAGGT
CGGCCTGCACAAAAAGATCACCATCTCCAGCACGCACTCGCTCGGGGTGCTCTCCCGGTCCTTCCCGCCGTCCGCGGGGG
CGTTCAACAGCAGCTACGCGCACTTCCTCAAGCCCATGCTGGAGTTCCTCGTGGAGAACCAGGCGCCCTTCATGGTCGAT
CTGTACCCCTATTACGCCTACCAGAACTCGCCCAGCAATGTCTCGCTGAACTACGCCCTCTTCTCGCCGCAGTCCGAGGG
CGTGATTGATCCCAACACTGGATTGGTCTACACAAACATGTTTGATGCGCAGGTCGATTCCATCTTCTTCGCGCTCATGG
CTTTGAACTTCAAGACACTCAAGATCATGATCACCGAGACAGGATGGCCGCACAAGGGAGCTGCCAAGGAGACCGGGGCA
ACTCCGGACAATGCTCAGACTTACAACACCAATCTGATTCGTCATGTTGTCAATGACAGCGGCACGCCTGCCAAGCCCGG
GGAAGAAATAGATGTCTACATCTTCTCCTTGTTCAATGAGAACAGGAAGCCGGGCATCGAGTCGGAGAGGAACTGGGGAC
TCTTCTCTCCAGACCAAAGCTCCATCTACAGCATAGATTGGACTGGCCGAGGAAATGTGGACATCATGACTGGAGGAAAC
CGTTCAAATGGTACTTGGTGTGTTGCTTCAACCAATGTCTCGGAGACGGCTCTGCAGAATGGCTTAAATTGGGCATGCGG
CCCAGGCAATGTCGATTGCTCTGCTATTCAACCAAGCCAACCCTGCTACCAGCCCGACACATTGGTTTCACATGCTTCAT
ATGCATTCAACAGCTATTATCAGCAAAATGGAGCTACTGATGTGGCTTGTGGATTTGGTGGTGCTGGAATGCGGACGACC
AAAGATCCAAGTAAGTATCCTGTGCTTAAAACAACTACATTGATAATGTAACGAATGCTTGCACCT---TATACTATCTC
TGCTTCATTACTAGCTTTGGATGTAGTCTGAATACTGAAAACTAGCCAATTGTAAGCCTATACTTGCAGACAATATGTGC
TGACTACAGTGTTTATGATAG----TATCCAGGTCCTTGACTGAAATTGCAACCGTAAGTCCATTGATATGATGCTAGCT
GTATTTCTGGACATGTAGATGAGTATTTCTTTTGATGAATATATATACAGTTATCAGGTGTTGACTGAGTGTCTTTTTGT
CTAGAGACTACAGAGAAGATAGTGCATTACTTAATTTACTGTAATAACATAGCC-TTTTGACTTTTGAATGCCTAATCAT
GAATTTAATA-TTTTATTACGCTTTCTCTCCTCTGCCGCTTCTAGCTAAAATTA-TTAGGTTAGACAAATGGTATGAGCA
TCATCAGTTTTGAGATATGATCGATTCATTTTGTATACCAATTATGCTATAACATTTCATAGGATTCACAGGCATAATCT
TCT--------TATTTGCTAGTTCTGCATGAATCGACTTATGCGCTGATAAGA--AAAAAAAA-CATGCATAGACATTTT
TATAATATAAATGGTACCTTGCATGGTTCATATGCGAACAATTTATATGAAAATTTGATCATGTAGTTACAGTTTAATAT
ATAGCTTACCGATGGGTGCTGTCTCATGCTGCTTCACGCAATGCTAGATGA----------------------CTAAACT
AGTTGTGATCCTCGTGTGTTGCCTCTGCATCACTACCCTGGTGTTCTCCTATGAGCTGTGAAGTGTGACCAGTTTTTGCT
TGTACTTGTTGGTTTAATGTTACTGTCGATGTTGCTTTT-AGTGTCAGCTGGATAATCTTCTCAATGATTTTGTATTGCT
-TTGCTTGCAGGTTATGACACTTGTGTTTACATGGCAGCCGGGTAC---GAAAAAACTCCCCGATCTCTCTTTGCAAATG
TGATGAACATGCCCACCTACTGGTCTGATCAACAGTTTGCACTAACTATTGTTTTTCTTCTTCTTTCTTACAGCAGCAAG
ATTAGCACCAAAAATTCAACCGCCACTCCAGCTCCAAGCGGCTCCAGCTCGTCACTGTTTGCCCAATCCCGCACCCTTCT
GCTCCCTGTGCTTCCCATTGTGATTGCCGTGGGCTTTCTGTGA-------------------------------------
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>chr3D_1_TraesCS3D01G277300
AGTTTCACTGGTAGGAGTATTTCAGAGTGTCGGAGTAAGATTTAAGCCACGATGAAATCCCACCGCCCTCGTGAGACCTT
TAATTAAGGACCCCCTTACCCGGCAAACGTTCGCCGGGGAGGGTGGTATTTGCGGACCTTCGCATGGCA-TTTTTAGTTG
TGTGGCAGTGGGCGAGGTGGCAATTTCTTCAGGCGACATAACATTTTCTCTCCGAGAAGGCAATTTTCGTTTAAAATTGC
CGTCGCTTGATCTTATTTTACAACTCAAAATTCCATCAAAGATGGTTCATTTGCCACCTCCATGTAGCGAACGTTCGCCA
GCTACAATTACCGATAGTTAAAGCCAAAATCTTTGGAAAATGCAATCACTGGCAGGAAACAAATCAGTTTAGCTATTTCC
TCACGAATTATTAGCTACTCTCTCCGTTCCAAAATAGATGACTCAACTTTATATTAAAGTTAGTACAAAATTGAGTCATC
TATTTTAGAACGGAGGGAGTACGTCACTTGACACTAGCCAATGTTGCAAGGTCATTTTTTACCAAGACCCCGTGAGCTCA
CGCGTCGACCC-TAGCCGTGTGGTCCCGGTCCAAGCGAACATTCCTCGCTTACTCCTTTTTCTTTTTCCCTGAGGAAATT
CCTCGCTGCTGCAGCTCGGTCCATCGGCT------CCCCTCCCCCCTTCCCCCC-TTCCGTTTCTACTCCGGACCCGTGC
GACCTCTGTTTAAACGCCCTCAACCCTATTTTATAACGCACCCCCTCGCGTCCGCGTCCGCTTCCGCCCGCCCGCGACAG
TCACGCGCGCACTCCATTCCACG----TCTGCTCCGCTGCGCCGCCTGCGCCCCTTGGCCAGCGTCAGGCATCAGCCCGT
CCTCCTCTCTC-------TTCCTCCCCTCCACTC-----CACTCAACTGT-----CACACTTCCCGGCCGCGTAGCCAGC
ACAGGAGCGCGGACGGCAAGAGCAAGGTCTTGTCAGCGCGGAGGAGGCCCAGCTCGGGGCTGGGACGCCAATGGCGCGGC
GGCATGCGGCGGCGGTTTCCGCGTTCCTCTTCTTGCTGCTCGTGGGTGAGTTCTTGA-CCACATGCTCCTCCGGTTCGTC
TTCTGGTAA-----TACTTGATAGTAGTGGTTGCCCTTTTGGAATGTGAAATCTTGGTTAAGTGGAAGCCGAGTGCTAGA
TGCCTTGCTTCCCGCTGGGTGCTAGCTA-----CCTGCAATGCGTATGGTACCGTGATGATGTCCGACGAATATGTTCTT
TTGAC--------------------------------------------------------CAGATTGTTTGTTTTTCTG
GCATGGAATTAA---AATACTAAATGGACGCGTCAATGGTGGCTAAAATAAAGAGAGATTGCGCGCCCCTGAATCCTGAT
GTGGGGCTTTTGCACTTGCAGGGCACTGCCACGGCGGCAAGACCGGCATCTGCTACGGCCGCAACGCCGACGACCTGCCG
GGGCCCGACAAGGTGGCGCAGCTCATCCGGCAGCAGTCCATCAAGTACGTGCGCATCTACGACACCAACATCGACGTCAT
CAAGGCCTTCGCCAACACCAGCGTCGAGCTCATGGTCGGCGTCCCCAACGCCGACCTCCTCGCCTTCTCGCAGTACCAGT
CCAACGTCGACACCTGGCTCAAGAACAGCATCCTCCCCTACTACCCGGCCACCATCATCACCTACATCACCGTCGGCGCA
GAGATCACCGAGAGCCCCATCAACGTCTCCGCCCTCGTCGTGCCGGCCATGCGCAATGTGCACGCCGCCCTCAAGAAGGT
CGGCCTGCACAAAAAGATCACCATCTCCAGCACGCACTCGCTCGGGGTGCTCTCCCGGTCCTTCCCGCCGTCCGCGGGGG
CGTTCAACAGCAGCTACGCGCACTTCCTCAAGCCCATGCTGGAGTTCCTCGTGGAGAACCAGGCGCCCTTCATGGTCGAT
CTGTACCCCTATTACGCCTACCAGAACTCGCCCAGCAATGTCTCGCTGAACTACGCCCTCTTCTCGCCGCAGTCCGAGGG
CGTGATTGATCCCAACACTGGATTGGTCTACACAAACATGTTTGATGCGCAGGTCGATTCCATCTTCTTCGCGCTCATGG
CTTTGAACTTCAAGACACTCAAGATCATGATCACCGAGACAGGATGGCCGCACAAGGGAGCTGCCAAGGAGACCGGGGCA
ACTCCGGACAATGCTCAGACTTACAACACCAATCTGATTCGTCATGTTGTCAATGACAGCGGCACGCCTGCCAAGCCCGG
GGAAGAAATAGATGTCTACATCTTCTCCTTGTTCAATGAGAACAGGAAGCCGGGCATCGAGTCGGAGAGGAACTGGGGAC
TCTTCTCTCCAGACCAAAGCTCCATCTACAGCATAGATTGGACTGGCCGAGGAAATGTGGACATCATGACTGGAGGAAAC
CGTTCAAATGGTACTTGGTGTGTTGCTTCAACCAATGTCTCGGAGACGGCTCTGCAGAATGGCTTAAATTGGGCATGCGG
CCCAGGCAATGTCGATTGCTCTGCTATTCAACCAAGCCAACCCTGCTACCAGCCCGACACATTGGTTTCACATGCTTCAT
ATGCATTCAACAGCTATTATCAGCAAAATGGAGCTACTGATGTGGCTTGTGGATTTGGTGGTGCTGGAATGCGGACGACC
AAAGATCCAAGTAAGTATCCTGTGCTTAAAACAACTACATTGATAATGTAACGAATGCTTGCACCT---TATACTATCTC
TGCTTCATTACTAGCTTTGGATGTAGTCTGAATACTGAAAACTAGCCAATTGTAAGCCTATACTTGCAGACAATATGTGC
TGACTACAGTGTTTATGATAG----TATCCAGGTCCTTGACTGAAATTGCAACCGTAAGTCCATTGATATGATGCTAGCT
GTATTTCTGGACATGTAGATGAGTATTTCTTTTGATGAATATATATACAGTTATCAGGTGTTGACTGAGTGTCTTTTTGT
CTAGAGACTACAGAGAAGATAGTGCATTACTTAATTTACTGTAATAACATAGCC-TTTTGACTTTTGAATGCCTAATCAT
GAATTTAATA-TTTTATTACGCTTTCTCTCCTCTGCCGCTTCTAGCTAAAATTA-TTAGGTTAGACAAATGGTATGAGCA
TCATCAGTTTTGAGATATGATCGATTCATTTTGTATACCAATTATGCTATAACATTTCATAGGATTCACAGGCATAATCT
TCT--------TATTTGCTAGTTCTGCATGAATCGACTTATGCGCTGATAAGA--AAAAAAAA-CATGCATAGACATTTT
TATAATATAAATGGTACCTTGCATGGTTCATATGCGAACAATTTATATGAAAATTTGATCATGTAGTTACAGTTTAATAT
ATAGCTTACCGATGGGTGCTGTCTCATGCTGCTTCACGCAATGCTAGATGA----------------------CTAAACT
AGTTGTGATCCTCGTGTGTTGCCTCTGCATCACTACCCTGGTGTTCTCCTATGAGCTGTGAAGTGTGACCAGTTTTTGCT
TGTACTTGTTGGTTTAATGTTACTGTCGATGTTGCTTTT-AGTGTCAGCTGGATAATCTTCTCAATGATTTTGTATTGCT
-TTGCTTGCAGGTTATGACACTTGTGTTTACATGGCAGCCGGGTAC---GAAAAAACTCCCCGATCTCTCTTTGCAAATG
TGATGAACATGCCCACCTACTGGTCTGATCAACAGTTTGCACTAACTATTGTTTTTCTTCTTCTTTCTTACAGCAGCAAG
ATTAGCACCAAAAATTCAACCGCCACTCCAGCTCCAAGCGGCTCCAGCTCGTCACTGTTTGCCCAATCCCGCACCCTTCT
GCTCCCTGTGCTTCCCATTGTGATTGCCGTGGGCTTTCTGTGATT-TTCGGAGCACGCTCTAGTTAGTATGTTCGGATCG
AAGGTGAGAGGCTAATTGCCTAATACTGGGAACCAGTAATGTTCTTATGTGTGGTGAAAGGTGGCAGTAGGGACCTA---
TTATGCAGTATGTTATTCTCTGTGGATGTACATCGCTGCGCGAACAATATATGTTAGTTGCCATTGAGAACTAGAAATGT
GTTGCCGATGTGGTCTCTCTAACTGTGCTCATCTTTACTGCATTTTGCATCATGCTATTAATTTGGAATCTCTTCGTTGT
TATTTGAAGGTCGTATCAGTATTCATGCTGCGCCGGTGA-------------------------------TGTAACCTCA
TCGTTTCATTCACCAGAGGTCCTAAGATTCAGAATTATTAAGCTGTCTATATCTGAATTATGTGGGCTTCTACTTTCCAG
TGACTCC-----------------------ACTTCAACTGTTAGCTTC--------------------------------
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--------------------------------------ACTAGTTTTGCTTCGATACACCCCTCTTAAAAGTGTACACGA
GTATTAAAGTTACTTAAAAAGGTTATCATCATATTAGCTTGCAGATCACATGTATTGAATAGATTGATTTAGATATAAA-
--------AGACTACATTACCCTTTTTTTTATTGAAGGGTTAACTTCTAATCTTCTCAAT-------------------T
GTTATGTTAGTTCTCCACTATGCCGATGATATTCTCATTTCTCATTA--TTTTGAGATAAATTCTCATTTCTCATGTATC
AGGCTACAACCACAATTCTCATTTCTCATGTATCCGTTGTGGTTGTAGTCCTGTGTAGAAGTTAAGTATGGGGTGTAGCC
TATGTAAAAGATGCAATAAGTA----GTAACTTGGGTTTGGAACGAAAAAGCGTTGCAGAGGCCGGTCTGCAGGTAGCTC
CTAATCCACCCCGCCGAACAAGCATGGGGATGCGTGCGCCAACATGTATTGCAATTTGCAGCCTTGCCTGAAAGATAGTA
TATCACCGTATTTTAGAGTAGGCCCCATGCTGTACATTTAAGAAACAGGTGGGCTGGCGACAGGCACATGATACTGCTGC
GCCTT
>chr3A_12
-----------TAGGAGTATTTCAAAGCGTCGGAGTAAGATTTAAGCCACTATGAAATCCCACCGCCCACGTGAGACCTT
TAATTAAGGACCCCCTTACCCGGCAAACGTTCGCCAGGGAGGGTGGTAGTTGCAGACGTTCACATGGCATTTTTTAGTTG
TGTGGCAGTAGGTGAGGTGGCAGTTTCTTCAGGCGACATGACATTTTCCCTCCGAGAAGGCAATTTTCGTTTAAAATAGC
CGTCGCTTGATCTCGTTTCACAACTCAAAGTGCCATGAAAGATGGTTCATTTGCCACCTCCATGCTGCGAACGTTCGCCA
GCTACAATTACCGATAGTTAAAGCCAAGATCTTTGGAAAATGCAATCACTGGCAGGAAACAAATCAGGTTAGCTATTTCC
TCACGAATTATTAGCT----------------------------------------------------------------
--------------------ACGTCACTCGACACGAGCCAAGGTTCCAAGGTCAATTTTTACCAAGACCCCGTGAGCTCA
CGCGTCAACCTTTAGCCGTGTGGTCCCTGTCCAAGCGAACATTCCTCGCTGCTCCTACCTTTTTTTT-CCTCAGGAAATT
CCCCGCTGCTGCTGCTCGGTCCATCGGCCCCCTCCCCTCCCCTCCCCTCCCCCC-TTCCGTTTCTGTTCCGGACCCGTGC
GACCTCCGTTTAAACACCCTCAACCCTATTTTATAACGCACCCCCTCGCGTCCGCGTCCGCTTCCGCCCGCCCGCGACAG
TCACGCGCGCACTCCATTCCACG----TCTGCTCCGCTGCGCCGCCTGCGCCCCGTGGCCAGCGTCAGGCATCAGCCC-T
CCTCCTCTCTC-------ATCCTCCCCTCCCCTC-----CACTCCACTCAACGGGCACACTTCCCGGCCGCGTAGCCAGC
ACAGGAGCGCGGACGGCAAGAGCAAGGCCTTGTCAGCGAGGAGGAGGCCCAGCTCGGTGCTGGGACGCCAATGGCGGGGC
GGCATGCGGCGGCGGTTTCCGCGTTCCTCTTCCTGCTGCTCGTGGGTGAGTCCTTGAACCACATGCTCCTTCAGTTCGTC
TTCTGGTAC-----TAGATAATAGTAGTGGTTGCCCTTTTGGAATGTGAAATCTTAGTTAAGTGGACGGCGAGTGCCAGA
TGCCTTGCTTCCCGCTGGGTGCTAGCTAGAGTACCTGCAATGTGTATGGTGCCGTGATGGTGTCCGACGAATATGTTCTT
TTGGGGGAAATCCAATGATCTAATCCCCATGTCCCATGACCTTTATCTACTACCCAACCTTCAGATTCTTTGTTTTTCTG
GCATGGAATTTGTAGAATATTAAATGGACGCATCAATGGTGGCTAAAATAAAGAGAGATTGCGCGCCCCTGAATCCTGAT
GTGGGGCTTTTGCA------GGGCACTGCCACGGCGGCAAGACCGGCATCTGCTACGGCCGCAACGCCGACGACCTGCCG
GGGCCCGACAAGGTGGCGCAGCTCATCCAGCAGCAGTCCATCAAGTACGTGCGCATCTACGACACCAACGCCGACGTCAT
CAAGGCCTTCGCCAACACCAGCGTCGAGCTCATGGTCGGCGTCCCCAACGCCGACCTCCTCGCCTTCTCGCAGTACCAGT
CCAACGTCGACACCTGGCTCAAGAACAGCATCCTCCCCTACTACCCGGCCACCGCCATCACCCACATCACCGTCGGCGCC
GAGATCACCGAGAGCCCCATCAACGTCTCCGCCCTCGTCGTGCCGGCCATGCGCAATGTGCACGCCGCGCTCAAGAAGGT
CGGCATGCACAAGAAGATCACCATCTCCAGCACGCACTCGCTCGGGGTGCTCTCCCGCTCCTTCCCGCCGTCCGCGGGGG
CGTTCAACAGCAGCTACGCGCACTTCCTCAAGCCCATGCTGGAGTTCCTCGTGGAGAACCAGGCGCCCTTCATGGTCGAT
CTGTACCCCTATTACGCCTACCAGAACTCGCCCAGCAATGTCTCGTTGAACTACGCCCTCTTCTCGCCGCAGTCCCAGGG
CGTGATTGATCCCAACACCGGATTGGTCTACACAAACATGTTTGATGCGCAGGTCGATTCCATCTTCTTCGCGCTCATGG
CTTTGAACTTCAAGACACTCAAGATCATGATCACCGAGACGGGATGGCCGCACAAGGGAGCTCCCAAGGAGACCGGGGCG
ACTCCGGACAATGCTCAGACTTACAACACCAATCTGATACGCCATGTTGTCAATGACAGCGGCACGCCTGCCAAGCCTGG
GGAAGAAATAGATGTCTACATCTTCTCCTTGTTCAATGAGAACAGGAAGCCGGGCATCGAGTCCGAGAGGAACTGGGGAC
TGTTCTCTCCAGACCAAAGCTCCATCTACAGCATAGATTGGACTGGCCGAGGAAATGTGGACATCATGACTGGAGGAAAC
CGTTCAAATGGTACTTGGTGTGTTGCTTCAACCAATGTCTCGGAGACGGCTCTGCAGAATGGCTTGAATTGGGCATGCGG
TCCAGGCAATGTCGATTGCTCTGCTATTCAGCCAAGCCAACCCTGCTACCAGCCCGACACATTGGTTTCACATGCTTCAT
ATGCGTTCAACAGCTATTATCAGCAAAATGGAGCCACTGATGTGGCCTGCGGATTTGGTGGTGCTGGAATGAGGACGACG
AAAGATCCAAGTAAGTATCCTGTGCTTACAACAACTACATTGACAATGTAAGGAATGCTTGCACTGGAGTATAATATCTC
TGCATCATTACTGGCTTTGGATGTAGTCTGAATATTGAAAACTAGCCAATTGTAAGCCTACACTTGCAGACAATATGTGC
TGACTACAGTGTTTATGATAGTAGTTATCCAGGTCCTTGACTGAAATTGCAACTGTAAGTCCATTGATATAATGCTAGCT
GTATTTCTGGACATGTAGCTGGGTATTTCTTTTGAAGAATATATACACAGTTATCAGGTGTTAACTGAGTTTCTTTTTGT
CTAGAGACTACAGAGAAGATAGTGCATTGCTGAATTTACTGTAATAACATAAAC-TTTTGACTTTTGAATGCCTAATCAT
GAATTTAATAATTTTATTACGTTTTCTCCCCTCTGCCGCTTCTAGCTAAAATCTGTTAGGTTAGAAAAATGGCATGTGCA
TCATCAGTTTTGAGATATGATCGATTCATTTTGTACGCCAATTATGCTATAACATTTCATAGGATTCACAGGCATAATCT
TCT--------TATTTGCTAGTTCTGCATGAATCGACTTATGCTCTGATAAGA--AGAAAAAATCATGCATAGACATTTT
TATAATATAAATGGCCTCAATTTGATAATGGAGTTACAATTTA-ATATGGAAGTTTGATCATGGAGTTACAATTTAATAT
ATAGCTTACCGATGGGTGCTGTCGCATGCTGCTTCACGCAATGCTAGATGAAATGAATTAGTACAAGATATGGCTAAACC
AGTTGTGATCCTCGTGTGTTGCCTCTGCATCACTACTCTAGTGTTCTCCTATGAGCTGTGAAGTGTGACCAGTTTTTGCT
TGTACTTGTTGGTTTAATGTTACTGTCGATGTTGCTTTT-AGTGTCAGCTGGATAATCTTTTCAATGATTTTGTATTGCT
-T-GCTTGCAGGTTATGACACTTGTGTTTACATGGCAGCCGGGT---AAGAAAAAACTCTCTGATCTCTCTTTACAAATG
TGATGAACATGCCCACCTACTGGTCTGATCAACAGTTTGCACTAACTATTGTTTTCCTTCTTCTTTCTTACAGCAGCAAG
ATTAGCACCAAAAATTCAACCGCCACTCCAACTCCAAGCGGCTCCAGCCCGTCACTGTTGGCCCAATGCCGCACCCTTCT
GCTCCCTGTGCTTCCCATTGTGATTGCCGTGGGCTTTCTGTGATT-TTCGGAGCACGCTCTAGTTAGTACGTTCGGTTCG
AAGGTGAGAGGCTAATTGCCTAATACTGGGAACCAGTAATGTTCTGATGTGTGGTGAAAGGTGGCAGTAGGGACCTG---
TTATGCAGTATGTTATTCTGTTTGGATGTACATCGCTGCGCGAACAATATATGTTAGTTGCCATTGAGAACTAGAAATGT
GTTGCCGATGTGGTCTCTCTAACTGTGCTCATCTTTACTGCATTTTGCATCATGCTATTAATTTGGAATCTCTTCGTTGT
TATTTGA-----------------------------------------------------------------------CA
TCGTTTCATTCACCAGAGGTCCTAGGATTCAGAATTATTAAGCTGTC--TATCTGAATTATGCGGGCTTCTACTTTCTAG
TAACTCCTCTCCGCCTGTTCATTTTCTTGAACTTCAACTGTTAGTTTT--------------------------------
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--------------------------------------ACTAGTTTTGCTTCGATACACCCTTCTTAAAAGTGTACACGA
GTATTAAAGTTACTTAAAAAGGTTATCATCATATTAGCCTGCAGATCACATGCATTGAATAGATTGATTTAGATATAAA-
--------AGACTACATTACCC-TTTTTTTATTGAAGGGTTAACTTCTAATCTTCACATTTAATCTGTATCTTCTCAACT
GTTATGTTAGTTCTCCACTATGCGGATGATATTCTCATTTCTCTTTTTTTTTTGAGATAAATTCTCATTTCTCATGTATC
CGTTG------------------------------GTTGTGGTTGTAGCCCTGTGTAGAAGTTAAGTATGGGTTGTAGCC
TGTGTAAAAGATGCAATAAGTACGTAGTAACTTGGGTTTGCAA-------------------------------------
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>chr3B_500
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--------------------ACGTCACTCGACACGAACCAATGTTGCGAGGTCATTTTTTACCAAGACCCCGTGAGCTCA
CGCGTCAACCTT-AGACGTGTGGTCCCGGTCCAAGCGAACATTCCTCGCTACTT--------TTTTTCCCTGAGGAAATT
CCTCGCTGCCGCTGCTCGGTCCATCGGCT------CCCCTCCTCCCCTCCCCCCCTTCCGTTTCTACTCCGGACCCGTGC
GACCTCTGTTTAAACGCCCTCAACCCTATTTTATAACGCACCCCCTCGCGTCCGCTTCCGC--CCGCCCGCCCGCGACAG
TCACGCGCGCACACCATTCCACGCACGTCTGCTCCGCTGCGCCGCCTGCGCCCCGTGGCCAGCGTCAGGCATCAGCCCGT
CCTCCTCCCTCCCCTCTCTTCCTCCCCTCCCCTCTCCTCCACTCCACTCAACTGTCACACGCCCCGCCCGCGTAGCCAGC
ACAGGAGCGCGGGCGGCAAGAGCAAGTTCTTGTCAGCGCAGACGAGGCACAGCTCGGGGCTGGGACGCCAATGGCGCGAC
GGCATGCGGCGGCGGTTTCCGCGTTCCTCTTCTTGCTGCTCGTGGGTGAGTCCTTGAACCACATGCTCCTTCAGTTCGTC
TTCTGGCACTACTCTACTTGATAGTAGTGGTTGCCCTTTTGGAATGTGAAATCTTAGTTCAGTGGACGGCGAGTGCTAGA
TGCCTTGCTTCCCGCTGGGTGTTAGCTA-----CCCGCAATGCGTATGGTACCGTGACGGTGTCCGACGAATATGTTCTT
TTGGGGGAAATCCAATGAG-TAATCCCCATGT-CCATGACCTTTATCTAC---CCAACCTTCAGATTGTTTATTTTCCTG
GCATGGAATTAA---AATACTAAATGGACGCATCAATGGTGGCTAAAATAAAGAGAGATTGCGCGTTCCTGAATCCTGAT
GTGGGGCTTTTG------CAGGGCACTGCCACGGCGGCAAGACCGGCATCTGCTACGGACGCAACGCCGACGACCTGCCG
GGGCCCGACAAGGTGGCGCAGCTCGTCCGGCAGCAGTCCATCAAGTACGTGCGCATCTACGACAGCAACGTCGACGTCAT
CAAGGCCTTCGCCAACACCAGCGTCGAGCTCATGGTCGGCGTCCCCAACGCCGACCTCCTCGCCTTCTCGCAGTACCAGT
CCAACGTCGACACCTGGCTCAAGAACAGCATCCTCCCATACTACCCGGCCACCGTCATCACCTACATCACCGTCGGCGCC
GAGATCACGGAGAGCCCCATCAACGTCTCCGCCCTCGTCGTGCCGGCCATGCGCAACGTGCACGCCGCGCTCAAGAAGGT
CGGCCTGCACAAGAAGATCACCATCTCCAGCACGCACTCGCTCGGGGTGCTGTCCCGGTCGTTCCCGCCGTCCGCGGGGG
CGTTCAACAGCAGCTATGCGCACTTCCTGAAGCCCATGCTGGAGTTCCTCGTGGAGAACCAGGCGCCCTTCATGGTCGAT
CTGTACCCCTATTACGCCTACCAGAACTCGCCCAGCAATGTCTCGCTGAACTACGCCCTCTTCTCGCCGCAGTCCGAGGG
CGTGATTGATCCCAACACTGGATTGGTCTACACAAACATGTTTGATGCGCAGGTCGATTCCATCTTCTTTGCGCTCATGG
CTCTGAACTTCAAGACACTCAAGATCATGATCACCGAGACAGGATGGCCACACAAGGGAGCTGCTAAGGAGACAGGGGCT
ACTCCGGATAATGCTCAGACTTACAACACCAATCTGATTCGTCATGTTGTTAATGACAGTGGCACGCCTGCGAAGCCCGG
AGAAGAAATAGATGTCTACATCTTCTCCTTGTTCAATGAGAACAGGAAGCCGGGCATCGAGTCGGAGAGGAACTGGGGAC
TCTTCTCTCCAGACCAAAGCTCCATCTACAGCATAGACTGGACTGGCCGAGGAAATGTGGACATCATGACCGGAGGAAAC
CGTTCAAATGGCACTTGGTGTGTTGCTTCAACCAATGTCTCGGAGACGGCTCTGCAGAATGGCCTGAATTGGGCATGCGG
TCCAGGCAATGTCGATTGCTCTGCTATTCAGCCAAGCCAACCCTGCTACCAGCCCGACACATTGGTTTCACATGCTTCAT
ATGCATTCAACAGCTATTATCAGCAAAATGGAGCTACTGATGTGGCTTGTGGATTTGGTGGTGCTGGAATGCGGACGACG
AAAGATCCAAGTAAGTATCCTGTGCTTAAAACAACTACATTGATAATGTAAGGAATGCTTGCACTG---TATAATATCGC
TGCTTCATTACTGGCTTTGGATGTAGTCTGAATATAGAAAACTAGTCAATTGTAAGTCTACATTCGCAGATAATATGTGC
TGACTACAGTGTTTATGATAGTAGTTATCCAGGTCCTTGACTGAAATTGCAACCGTAAGTCCATTGATATAATGCTAGCT
GTATTTCTGGACATGTAGCTGGGTATTTCTTTTGATGAATATATATACAGTTATCAGGTGTTGACTGAGTTTCTTTTTGT
CTAGAGACTACAGAGAAGATAGTGCATTACTGAATTTACTGTAATAACATAGCCTTTTTGACTTTTGAATGCCTAATCAT
GAATTTAATAATTTTATTACGTTTTCTCTCCTCTGCTGCTTCTAGCTAAAATCTGTTAGGTTAGACAAATGGCATGAGCA
TCATCAGTTTTGAGATATGATCGATTCATTTTGTAT----------CTATAACATTTCATAGGATTCACAGGCATAATCT
TCTATTCTTCTTATTTGCTAGTTCTGCAAGAATCGACTTATGCTCTGATAAGAAGAAAAAAAA-CATGCATAGACAC--T
TATAATACAAATGGTATTTTGCATGAATCATATGAGAACAATTTATATGAAAATTTGATCATGGAGTTACAATTTAATAT
ATAGTTTACAGATGGGTGCTGTCGCATGCTGCTTCACGCAATCCTAGATGAAATGAATTAGTACAAGATATGACTAAACC
AGTTGTGATCCTCGTGTGTTGCCTCTGCATCACTACCCTGGTGTTCTCCTATGAGCTGTGAAGTGTGACCAGTTTTTGCT
TGTACTTGTTGGTTTAATGTTACTGTCGATGTTGCTTTTTAGTGTCAGCTGGATAATCTTCCCAATGATTTTGTATTGCT
TT-GCTTGCAGGTTATGACACTTGTGTTTACATGGCAGCCGGGTACAAAAAAAAAACTCTCCGATCTCTCTTTGCAAATG
TGATGAACATGCCCACCTACTGGTCCGATCAACAGTTTGCACTAACTATTGTTTTTCTTCTTCTTTCTTACAGCAGCAAG
ATTAGCACCAAAAATTCAACCGCCACTCCAGCTCCAAGCGGCTCCAGTCCGTCACTGCTGGCCCAATGCCGCACCCTGCT
GCTCCCTGTGCTTCCCATTGTGATTGCCTTAGGCTTTCTGTGATTTTTCGGAGCACGCTCTAGTTAGTACGTTCGGATCG
AAGGTGGGAGGCTAATTGCCTAATACTAGGAACCAGTAATGTTCTGATGTATGGTGAAAGGTGGCAGTAGGGACCTAGTA
TTATGCAGTATGTTATTATCTATGGATGTGCATCGCTGCGCGGACAATATATGTTAGTTGCCACTGAGAACTAGAAATGT
GTTGTGCCGATGTGGTCTCTAACTGTGCTCATCTTTACTGCATTTTGCATCATACTATTAACTTGGAATCTCTTCCTTTT
TTTGGGATTGGTTATTAGTAGGCGAGTATTTTAGCAAACCCTTGGGAGGCAGGTGGATTATCACATGGGTTGTAACCTCA
TCGTTTCATTCACCAGAGGTCCTAGGATTCAGAATTATTAAGCTGTC--TATCTGAATTATGTGGGCTTCTACTTTCTAG
TAACTC--CTCCGCCTGTACATTTTCTCGAACTTCAACTGTTAGTTTTACTAGTAAGCTTGCACGTGCAACGCACGTCTC
CATTATAAACACAAAAATCATTAGATTTTTTTGTTCAGATTTAAATTATATTGTATAGTAATACTCTATATGTACAACTA
ATCGACATGGAAAAAACATCAGAAATGATTATCTTTTCAGGATGGTCAGGTTGGAATAGAAAGCACTATCAACAAACTAA
AAGAAAGTCATGTTCTCAAGTCAGGTTCAGTGCAGACATTGTTAACAAAACTATTGCAATTAGTACCGGGTAAAACTTCA
AAGAATCTTTCAATTGTAAGTGTGCACATACAGCGCACACCATGTGATGGCGTAAGTGCTTCCTTTTTTCTGGAGCAAGT
GCTTCTGATGTCAAGGAAAGTATACACAACCAAGTTAGGCTTGATGTATTTATGGTTTCATAGAGATATGCCCATACACT
TGTTTTCGTCATTAAACACATCAACTACACAGTGTAGCAATGGAAATTACAACAAGTTGATGCATTTCTTAATTTGACGT
TAACAAAAAAAATTCAAACATTCTTAAGCCAGCCAGCTATGAACAAAAAATGGTCCGAGACAAATTAACAAAATTTTGTC
TCTCCACAGAAAATGGAAGTGTAAATTATGGCACGAAATAAGATGGTGCAACCAACAAACTGGTACTTACAGGTGATTGC
TATGTACAAAGGCATGGATCACAGTTCACATCTCCATAATAGCATTTTGGCACATCGTTGACTTTTTTATTTAGTGTAAT
ATTTTCCTTCCCAAATATGAACTTCGATTCCTCGTTATTCTGTGATTCCTCATAGTCCCGCTTGCACTTCCACATGAGCG
CCTCACGATAATGAAGGTATTGGATATCGGCGACCATGTGAAGCCCCCTCGTGAGCTAGATGTTCTCCTTCACCCTAGTA
GCAACATTCATGTTACATCGTCAGCTAAAATAATAAAAATGTGATAAGTGCTGCAACTTTTCAATCTGAAGATCTATGAG
CAACGTTTCAAAATTAAGATCAATGACGGCGGAGAATATTCATATGCTCCAAATTATATGTCTTGTGTTCCTACAGACCT
AAAGTACAAGCCATGCTACTATCTTCCTCTAGACAAGCATCATTTCTGAACCTTTAGTGACATGAAAAGTCTGACAGAAA
GCTTAATAAATGGAATTTCATTGTACCTATTTTTTTATAACTTGCCAAACCTCAATGGATAGGGATCATAGAACTGCAGT
CCAATTATACCGAACATACATCCCTATAACCATTTATTTCATTGACTAAAAATCTGCAAAAAAAAAGCAGCAAAACATGC
ATTCTTGCTCATGCAACTTAGTCTGGCAACCATATATAGAGTTAATTGCTGAAAATATTTGTAGAACCTTATTCGACGAA
TACCGACAACTTGAGCCAATTAAATCACATATGACAATACAAAATATGATGAAATCGATTCGTATGTAACCTATCAATGA
GTGAAGATAAAATCAAGAGCAAACTGACTTCAGGTAACCAATGAGAACATATGCCCTTGAAATAAAGTCGCTGAACTGTT
ACTTCGAGCGGAAAAAGAACCATCTTTTATGATTAAAATCCCCCACCCGGAGCTCCTTTGGTAACTTCCGAATCAGTTAA
CCTTTATAACAAGTTAACAACTAAGTCAGAATAAGAAAATTATACAAGAGATGCATCAATTAGTACCACGTTGCGTCGAT
CACTTGTTTCTGGGAATATTACCACAAACATCATGTGCTCACAGCATCCACAGTACAGACCAGACCCTGAGAGCAGTTCG
AGAATCAATAATGGAGAATAAGAAGTATGATGAAAAAAACTGTTCAGTAAGCTCTTGTGACAAATTTCTACAACAGCTGA
ATCACAATCCTGCACATTCCACCTCCACACTCTGCTAGAATCTTGATCAGGGAGAGAAAAATAATATAAATTCGAAGCAT
ACAAAGAACAACACCAAAGCAGCGCTTCGAATCTGTAAGCTAACCCCCAAAGTACCCCCCAAGTAGTGCAATCGGTGCAC
CCAAGTGTTGATTACAGCGTTAACATCCAGATCTATATGCATGCAAATAATCGCAACATGGATAAATGAATATTACCTAC
GGTCCTATTGGATCTGCACTTTTTAAGAAAAAAACGTGTTGTGGCGGATGCCTCAGCTCAAGCCGGTTCGCGCGGCGACG
GCGGGCTCACATGGCAACGGCCTCAGCGGAGGCGGGCTTGGGGCGACGGCGGGCAGGCTCCCGTGGTGCAGCGGCCGCGG
GTTCGCATGGCGGAGTCCTCAGCGGAAGCCGGTTCTCGCGGGGACGGCAGGCTCACATGGCAACAGCCTCAGCAGAGGCG
GGCTTGGGGTGACGGCGGGCAGGCTCCCGTGCCGGCGGCGGGCTCGCGTGTAGGTGTAGGGCGGCCGCGATGTTGCGGGG
AATCAGCGTGCAGGAGGACAATCAGATCTCGAACAGGGGAGAGGACAAGATGATCGTGGAGGAGGTGACGGAGGAGCTTC
CGCCTACTCGACGGCAAGGTACAGGGAGGAGATGGGGCTGCCGGGCGTCGTGCGGTGTGGTGGCGGCGCAAGAAAGGAAG
GCATCGGGGCTGCAGGCGAAGGAAGGTGAGGGCGGCCAGTTTCTATTTTTTTCTGCGATGATCGCGCGATGGAAGGGGTT
GCGGACGCGGTGACTTTCAGCCTGGTGGAGTACGGTCAGCCTAGGTAAATTGCTAAGTGTACCCCAGATCGCGATTAGAT
TAATGATGACTGTTAGATTGAGTCGTCTGGGCTTAATCCTATGATGGTAATGTGTCCACGGACGTTTGTTTGGGTGCGCA
TAGAAAAGATAATGTTTGATTGTTTATTAGTAGTAGAGACTAGTTTTGCTTCGGTAAACCCCTCTTAATGGTGTACGCGA
GTATTAAAGTTACTTAAAAAGGTTATCATCATATTAGCCTGCAGATCACATGTATTGAATAGATTGATTTAGATATAAAA
GATATAAAAGACTACATTATCC--TTTTTTATTGAAGGGTTAACTTCTAATCTTCACATTTAATCTGTATCTTCTCATTA
C----GTTAGTTCTCCACTATGCGGATGATATTCTCATTTCTCTC--TTTTTTGAGACAAATTCTCATTTCTCATGTATC
AGGCTACAATCACAATAAATGAGAA-----------TTGTGGTTGTAG-CCTGTGTAGAAGTTAAGTATGGGTTGTAGCC
TGTGTAAAAGATGCAATAAGTA----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>SNPs
SSSSSSSSSSS-------------S--S----------------------S-----------------S-----------
-----------------------------------S------------S----S---S---S------------------
---------S--S---------S----------------S--------S----------------------------S--
-------------SS---S----------S-S----S---------------------------SS--------------
---------------------------S---------------------------------------S------------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--------S-----S---------------------------------------------
------S---S---------------------------------------SSS--SSSS--S------------------
------------S-----------------------------S---S---------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
------------------------------S-------------S---SS------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S------------------S-S-------
--------S----------------------------------------------S----------S-S-----------
-----------------------------------------------------------S--------------------
---SS---------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------SSSS--------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
-----------------------------------------------------S-------------------------S
--------------------------------------------------------------------S-----------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
S-----------------------------S-------------------------------------------------
-------------------------------------------------------------------------------S
---------------------------------------------------S------------SS-------S------
------------S---------------------S-------------------------S-------------------
----------------------------------------------------------------------S---------
------------------S--S------------------------------------------------S---------
-------------------------------S------------------------------------------------
---------------------S------------------------------SS------------------S-------
------------------------------------S-------------------------------------------
-------------------------------------------S------------------------------------
----------------S--------SS-------S----------------------------S-------S--------
-----------------------S-------------------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S--------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
------------------------------------------------S----------S-------S------------
---------------------------------------------------------------------S----------
---------------------------------------------S----------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
-------SS-SSSSS-SSSSSSSS-SSS-SSSSSSSSSS-----------------------------------------
------------------------S----------------------SS----------------------------S--
-S------------------------------------------S--S--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------S-----------------------------------------
----------------------S--------------------------------S--S---------------------
-----------------------S-------------------S--S---------------------------------
---------S------SSSSSSSSSSSSSSSSSSS-------------S-----------------------S-------
-S--------------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_509
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------ACGGAGGGAGTACGTCACTT---------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1590
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---------------------------------------------------------------------ATCGACGTCAT
CAAGGCCTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_929
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CCCTCCACTCCACTCAACTG-------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2240
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-------------------------------------------------------------------------------A
ACTCCGGACAATGCTCAGA-------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_1113
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-----------------------------------------------------CTTGACCACATGCTCCTCCG-------
--------------------------------------------------------------------------------
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>reverse_3142
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---------------------CTTTCTCTCCTCTGCCGCTT---------------------------------------
--------------------------------------------------------------------------------
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>forward_2546
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----------------------------------------------CGGCTCTGCAGAATGGCTTA--------------
--------------------------------------------------------------------------------
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>reverse_4271
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------------------------------CGCCGGTGATGTAACCTCAT------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----
