Multiple sequence alignment - TraesCS3D01G275900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G275900 chr3D 100.000 3875 0 0 1 3875 382632448 382628574 0.000000e+00 7156
1 TraesCS3D01G275900 chr3D 73.507 653 167 5 3226 3875 173816977 173816328 3.870000e-60 243
2 TraesCS3D01G275900 chr3B 92.757 3010 113 47 1 2966 498328183 498325235 0.000000e+00 4253
3 TraesCS3D01G275900 chr3A 90.390 2997 140 66 28 2968 505526576 505523672 0.000000e+00 3803
4 TraesCS3D01G275900 chr4D 84.283 509 78 2 3232 3739 306306480 306305973 2.690000e-136 496
5 TraesCS3D01G275900 chr4D 75.455 660 142 18 3225 3874 65088229 65087580 1.750000e-78 303
6 TraesCS3D01G275900 chr4D 73.065 646 157 15 3235 3872 27135942 27136578 3.030000e-51 213
7 TraesCS3D01G275900 chr2A 76.358 626 143 1 3247 3872 745849901 745849281 8.020000e-87 331
8 TraesCS3D01G275900 chr5A 71.495 642 167 13 3237 3872 655148126 655148757 1.440000e-34 158
9 TraesCS3D01G275900 chr1B 82.418 182 28 3 1934 2113 584325426 584325247 5.180000e-34 156
10 TraesCS3D01G275900 chr1A 87.597 129 16 0 1934 2062 531282227 531282099 2.410000e-32 150
11 TraesCS3D01G275900 chr1D 86.822 129 17 0 1934 2062 432808563 432808435 1.120000e-30 145
12 TraesCS3D01G275900 chr1D 74.468 282 66 4 3226 3504 372539477 372539199 2.450000e-22 117
13 TraesCS3D01G275900 chr6D 70.958 637 169 15 3247 3875 435768897 435768269 1.880000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G275900 chr3D 382628574 382632448 3874 True 7156 7156 100.000 1 3875 1 chr3D.!!$R2 3874
1 TraesCS3D01G275900 chr3D 173816328 173816977 649 True 243 243 73.507 3226 3875 1 chr3D.!!$R1 649
2 TraesCS3D01G275900 chr3B 498325235 498328183 2948 True 4253 4253 92.757 1 2966 1 chr3B.!!$R1 2965
3 TraesCS3D01G275900 chr3A 505523672 505526576 2904 True 3803 3803 90.390 28 2968 1 chr3A.!!$R1 2940
4 TraesCS3D01G275900 chr4D 306305973 306306480 507 True 496 496 84.283 3232 3739 1 chr4D.!!$R2 507
5 TraesCS3D01G275900 chr4D 65087580 65088229 649 True 303 303 75.455 3225 3874 1 chr4D.!!$R1 649
6 TraesCS3D01G275900 chr4D 27135942 27136578 636 False 213 213 73.065 3235 3872 1 chr4D.!!$F1 637
7 TraesCS3D01G275900 chr2A 745849281 745849901 620 True 331 331 76.358 3247 3872 1 chr2A.!!$R1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 439 0.250209 CCGCCCGCTAGACTAGTAGA 60.250 60.0 11.15 0.0 0.0 2.59 F
1000 1051 0.249699 TTCTTCCTTGCGCTCGTTCA 60.250 50.0 9.73 0.0 0.0 3.18 F
1998 2058 0.397816 AAGCTCTGGTCCGAGGCTAT 60.398 55.0 11.20 0.0 0.0 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2189 2269 0.039256 GGAAAATGCACAGCAGCGAA 60.039 50.000 0.00 0.00 43.65 4.70 R
2207 2287 1.065102 CAATTCTCTCCTGCATTGCGG 59.935 52.381 10.65 10.65 34.23 5.69 R
3141 3227 0.184692 TGGTCCTTGGTGCAATCACA 59.815 50.000 0.00 0.00 44.87 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.392461 ACGATCCCCACCGTTTCATG 60.392 55.000 0.00 0.00 35.21 3.07
32 33 0.392461 CGATCCCCACCGTTTCATGT 60.392 55.000 0.00 0.00 0.00 3.21
33 34 1.134640 CGATCCCCACCGTTTCATGTA 60.135 52.381 0.00 0.00 0.00 2.29
41 42 4.484236 CCACCGTTTCATGTAGTACGTAA 58.516 43.478 0.00 0.00 32.45 3.18
208 248 0.721154 TGTCGGTACTGCTACGTACG 59.279 55.000 15.01 15.01 40.44 3.67
209 249 0.721718 GTCGGTACTGCTACGTACGT 59.278 55.000 25.98 25.98 40.44 3.57
210 250 1.924524 GTCGGTACTGCTACGTACGTA 59.075 52.381 25.41 25.41 40.44 3.57
211 251 1.924524 TCGGTACTGCTACGTACGTAC 59.075 52.381 23.60 19.21 40.44 3.67
296 336 2.103042 GGCGCTACCAGTCTGCTTG 61.103 63.158 7.64 0.00 38.86 4.01
388 439 0.250209 CCGCCCGCTAGACTAGTAGA 60.250 60.000 11.15 0.00 0.00 2.59
389 440 1.590932 CGCCCGCTAGACTAGTAGAA 58.409 55.000 11.15 0.00 0.00 2.10
390 441 1.532007 CGCCCGCTAGACTAGTAGAAG 59.468 57.143 11.15 0.00 0.00 2.85
391 442 2.574450 GCCCGCTAGACTAGTAGAAGT 58.426 52.381 11.15 0.00 0.00 3.01
392 443 3.737850 GCCCGCTAGACTAGTAGAAGTA 58.262 50.000 11.15 0.00 0.00 2.24
393 444 3.747529 GCCCGCTAGACTAGTAGAAGTAG 59.252 52.174 11.15 2.98 0.00 2.57
394 445 3.747529 CCCGCTAGACTAGTAGAAGTAGC 59.252 52.174 11.15 11.12 30.82 3.58
477 528 4.479993 CTCTTCCGGGCTGGCTGG 62.480 72.222 22.32 22.32 37.80 4.85
603 654 5.163509 GCAGGTTGATTTCCTCCTTTAATCC 60.164 44.000 0.00 0.00 32.37 3.01
649 700 3.815962 GAGTGGACTTGGAGTTTTTCCTC 59.184 47.826 0.00 0.00 46.92 3.71
771 822 1.550976 AGCTGTATATAAGCCCTCGCC 59.449 52.381 11.12 0.00 41.82 5.54
783 834 1.004918 CCTCGCCGTGTTTCTTCCT 60.005 57.895 0.00 0.00 0.00 3.36
789 840 1.535896 GCCGTGTTTCTTCCTTCCTTC 59.464 52.381 0.00 0.00 0.00 3.46
790 841 2.152016 CCGTGTTTCTTCCTTCCTTCC 58.848 52.381 0.00 0.00 0.00 3.46
791 842 2.224548 CCGTGTTTCTTCCTTCCTTCCT 60.225 50.000 0.00 0.00 0.00 3.36
792 843 3.477530 CGTGTTTCTTCCTTCCTTCCTT 58.522 45.455 0.00 0.00 0.00 3.36
844 895 1.895798 CCCCAAAAGCTCCTTTTCTCC 59.104 52.381 0.28 0.00 41.05 3.71
946 997 8.006298 TCCTTCTGAGATTCTTCATCTTACTC 57.994 38.462 0.00 0.00 42.92 2.59
957 1008 5.694910 TCTTCATCTTACTCACGTTTGGTTC 59.305 40.000 0.00 0.00 0.00 3.62
960 1011 2.101249 TCTTACTCACGTTTGGTTCCGT 59.899 45.455 0.00 0.00 37.90 4.69
962 1013 2.600470 ACTCACGTTTGGTTCCGTTA 57.400 45.000 0.00 0.00 34.59 3.18
964 1015 2.609002 ACTCACGTTTGGTTCCGTTAAC 59.391 45.455 0.00 0.00 34.59 2.01
965 1016 1.592081 TCACGTTTGGTTCCGTTAACG 59.408 47.619 20.99 20.99 46.26 3.18
966 1017 1.592081 CACGTTTGGTTCCGTTAACGA 59.408 47.619 28.79 12.31 44.32 3.85
967 1018 1.592543 ACGTTTGGTTCCGTTAACGAC 59.407 47.619 28.79 18.92 44.32 4.34
968 1019 1.860326 CGTTTGGTTCCGTTAACGACT 59.140 47.619 28.79 0.00 44.32 4.18
969 1020 2.284952 CGTTTGGTTCCGTTAACGACTT 59.715 45.455 28.79 0.00 44.32 3.01
970 1021 3.610495 GTTTGGTTCCGTTAACGACTTG 58.390 45.455 28.79 12.28 43.02 3.16
971 1022 2.886862 TGGTTCCGTTAACGACTTGA 57.113 45.000 28.79 14.46 43.02 3.02
972 1023 3.389925 TGGTTCCGTTAACGACTTGAT 57.610 42.857 28.79 0.00 43.02 2.57
973 1024 3.061322 TGGTTCCGTTAACGACTTGATG 58.939 45.455 28.79 10.45 43.02 3.07
974 1025 2.159747 GGTTCCGTTAACGACTTGATGC 60.160 50.000 28.79 12.33 43.02 3.91
975 1026 2.735134 GTTCCGTTAACGACTTGATGCT 59.265 45.455 28.79 0.00 43.02 3.79
989 1040 4.224818 ACTTGATGCTCTAGCTTCTTCCTT 59.775 41.667 16.11 0.00 43.23 3.36
1000 1051 0.249699 TTCTTCCTTGCGCTCGTTCA 60.250 50.000 9.73 0.00 0.00 3.18
1005 1056 1.016130 CCTTGCGCTCGTTCATGTCT 61.016 55.000 9.73 0.00 0.00 3.41
1207 1258 3.535962 CCTCAGAGCCTCTCGCCC 61.536 72.222 0.00 0.00 38.78 6.13
1342 1393 4.420522 TGATCATCATCCCGTTGATTCA 57.579 40.909 0.00 0.00 34.77 2.57
1343 1394 4.976864 TGATCATCATCCCGTTGATTCAT 58.023 39.130 0.00 0.00 34.77 2.57
1344 1395 6.112927 TGATCATCATCCCGTTGATTCATA 57.887 37.500 0.00 0.00 34.77 2.15
1345 1396 6.714278 TGATCATCATCCCGTTGATTCATAT 58.286 36.000 0.00 0.00 34.77 1.78
1346 1397 6.820152 TGATCATCATCCCGTTGATTCATATC 59.180 38.462 0.00 0.00 34.77 1.63
1347 1398 6.364568 TCATCATCCCGTTGATTCATATCT 57.635 37.500 0.00 0.00 34.09 1.98
1348 1399 6.168389 TCATCATCCCGTTGATTCATATCTG 58.832 40.000 0.00 0.00 34.09 2.90
1370 1421 4.395231 TGATATCTCCATCGTACGTCATCC 59.605 45.833 16.05 0.00 0.00 3.51
1454 1505 1.022451 TTCTTGTTATCCGGCGTGCC 61.022 55.000 6.01 0.00 0.00 5.01
1475 1526 3.081061 CGAAATGGATTGAACAGTCCCA 58.919 45.455 12.51 4.66 36.48 4.37
1549 1600 5.818678 TTAGTGGATAGGTTCACACTGTT 57.181 39.130 6.44 0.00 43.41 3.16
1640 1691 2.606725 GCTGTATGTGATGTCACTGCTC 59.393 50.000 13.71 3.83 46.55 4.26
1698 1752 0.980423 AACTCTTCCTCTGTCCCTGC 59.020 55.000 0.00 0.00 0.00 4.85
1704 1758 1.600636 CCTCTGTCCCTGCGCAAAA 60.601 57.895 13.05 0.00 0.00 2.44
1705 1759 1.576421 CTCTGTCCCTGCGCAAAAC 59.424 57.895 13.05 10.53 0.00 2.43
1707 1761 1.898574 CTGTCCCTGCGCAAAACCT 60.899 57.895 13.05 0.00 0.00 3.50
1785 1840 6.442952 CAGCGACTTCTCTGTATAATAAGCT 58.557 40.000 0.00 0.00 0.00 3.74
1788 1847 6.580791 GCGACTTCTCTGTATAATAAGCTCTG 59.419 42.308 0.00 0.00 0.00 3.35
1843 1903 1.357258 CGCAGTGTGACATGAGCCTC 61.357 60.000 0.00 0.00 0.00 4.70
1879 1939 3.117284 AGTTCTTTAGTCCTTGGCCCAAA 60.117 43.478 0.00 0.00 0.00 3.28
1913 1973 8.595533 GTTTTGGTTTGAGTTTTGAATCTTCTC 58.404 33.333 0.00 0.00 0.00 2.87
1998 2058 0.397816 AAGCTCTGGTCCGAGGCTAT 60.398 55.000 11.20 0.00 0.00 2.97
2131 2211 1.351017 TCAGCCCCGAATTTGAACTCT 59.649 47.619 0.00 0.00 0.00 3.24
2158 2238 2.222289 CGTGTTGATCAACGATCACGAC 60.222 50.000 30.40 21.28 46.87 4.34
2159 2239 1.982913 TGTTGATCAACGATCACGACG 59.017 47.619 28.55 0.00 46.87 5.12
2162 2242 1.132199 GATCAACGATCACGACGCGT 61.132 55.000 13.85 13.85 42.36 6.01
2189 2269 7.411912 CGACGTGATTTCAAGAGTTTGATATGT 60.412 37.037 0.00 0.00 42.60 2.29
2197 2277 3.866651 AGAGTTTGATATGTTCGCTGCT 58.133 40.909 0.00 0.00 0.00 4.24
2207 2287 1.055338 GTTCGCTGCTGTGCATTTTC 58.945 50.000 0.00 0.00 38.13 2.29
2616 2699 3.775654 CTCTGGCACCGGGACCTC 61.776 72.222 15.28 0.00 0.00 3.85
2681 2764 4.996434 GCTGCGGTGCCAGAGTGT 62.996 66.667 0.00 0.00 34.77 3.55
2881 2964 2.215907 CAGGATGTGGTGATCGTCTC 57.784 55.000 0.00 0.00 0.00 3.36
2888 2971 4.837896 TGTGGTGATCGTCTCATCTATC 57.162 45.455 3.38 0.00 35.86 2.08
2936 3022 5.991606 TGTATGATACCAGTAGCTGCAAATC 59.008 40.000 4.12 2.08 0.00 2.17
2968 3054 4.631813 GTCTCCGAATTCTGTACATGCTTT 59.368 41.667 3.52 0.00 0.00 3.51
2969 3055 5.810587 GTCTCCGAATTCTGTACATGCTTTA 59.189 40.000 3.52 0.00 0.00 1.85
2970 3056 6.480320 GTCTCCGAATTCTGTACATGCTTTAT 59.520 38.462 3.52 0.00 0.00 1.40
2971 3057 6.479990 TCTCCGAATTCTGTACATGCTTTATG 59.520 38.462 3.52 0.00 42.68 1.90
2972 3058 5.007626 TCCGAATTCTGTACATGCTTTATGC 59.992 40.000 3.52 0.00 40.59 3.14
2973 3059 5.008019 CCGAATTCTGTACATGCTTTATGCT 59.992 40.000 3.52 0.00 40.59 3.79
2974 3060 6.458751 CCGAATTCTGTACATGCTTTATGCTT 60.459 38.462 3.52 0.00 40.59 3.91
2975 3061 7.254761 CCGAATTCTGTACATGCTTTATGCTTA 60.255 37.037 3.52 0.00 40.59 3.09
2976 3062 7.795734 CGAATTCTGTACATGCTTTATGCTTAG 59.204 37.037 3.52 0.00 40.59 2.18
2977 3063 8.737168 AATTCTGTACATGCTTTATGCTTAGA 57.263 30.769 0.00 0.00 40.59 2.10
2978 3064 7.776933 TTCTGTACATGCTTTATGCTTAGAG 57.223 36.000 0.00 0.00 40.59 2.43
2979 3065 6.283694 TCTGTACATGCTTTATGCTTAGAGG 58.716 40.000 0.00 0.00 40.59 3.69
2980 3066 4.816385 TGTACATGCTTTATGCTTAGAGGC 59.184 41.667 0.00 0.00 40.59 4.70
2981 3067 4.162040 ACATGCTTTATGCTTAGAGGCT 57.838 40.909 0.00 0.00 40.59 4.58
2982 3068 4.530875 ACATGCTTTATGCTTAGAGGCTT 58.469 39.130 0.00 0.00 40.59 4.35
2983 3069 4.952335 ACATGCTTTATGCTTAGAGGCTTT 59.048 37.500 0.00 0.00 40.59 3.51
2984 3070 5.420104 ACATGCTTTATGCTTAGAGGCTTTT 59.580 36.000 0.00 0.00 40.59 2.27
2985 3071 5.982890 TGCTTTATGCTTAGAGGCTTTTT 57.017 34.783 0.00 0.00 43.37 1.94
3006 3092 4.457834 TTTTGCGGGTTTTCTTTCTTGA 57.542 36.364 0.00 0.00 0.00 3.02
3007 3093 3.430333 TTGCGGGTTTTCTTTCTTGAC 57.570 42.857 0.00 0.00 0.00 3.18
3008 3094 2.370349 TGCGGGTTTTCTTTCTTGACA 58.630 42.857 0.00 0.00 0.00 3.58
3009 3095 2.955660 TGCGGGTTTTCTTTCTTGACAT 59.044 40.909 0.00 0.00 0.00 3.06
3010 3096 3.004315 TGCGGGTTTTCTTTCTTGACATC 59.996 43.478 0.00 0.00 0.00 3.06
3011 3097 3.253432 GCGGGTTTTCTTTCTTGACATCT 59.747 43.478 0.00 0.00 0.00 2.90
3012 3098 4.454504 GCGGGTTTTCTTTCTTGACATCTA 59.545 41.667 0.00 0.00 0.00 1.98
3013 3099 5.390991 GCGGGTTTTCTTTCTTGACATCTAG 60.391 44.000 0.00 0.00 0.00 2.43
3014 3100 5.701290 CGGGTTTTCTTTCTTGACATCTAGT 59.299 40.000 0.00 0.00 0.00 2.57
3015 3101 6.872020 CGGGTTTTCTTTCTTGACATCTAGTA 59.128 38.462 0.00 0.00 0.00 1.82
3016 3102 7.063544 CGGGTTTTCTTTCTTGACATCTAGTAG 59.936 40.741 0.00 0.00 0.00 2.57
3017 3103 7.878644 GGGTTTTCTTTCTTGACATCTAGTAGT 59.121 37.037 0.00 0.00 0.00 2.73
3018 3104 9.274206 GGTTTTCTTTCTTGACATCTAGTAGTT 57.726 33.333 0.00 0.00 0.00 2.24
3020 3106 7.891183 TTCTTTCTTGACATCTAGTAGTTGC 57.109 36.000 7.95 2.98 0.00 4.17
3021 3107 7.233389 TCTTTCTTGACATCTAGTAGTTGCT 57.767 36.000 7.95 0.00 0.00 3.91
3022 3108 8.349568 TCTTTCTTGACATCTAGTAGTTGCTA 57.650 34.615 7.95 0.00 0.00 3.49
3023 3109 8.803235 TCTTTCTTGACATCTAGTAGTTGCTAA 58.197 33.333 7.95 3.77 0.00 3.09
3024 3110 9.424319 CTTTCTTGACATCTAGTAGTTGCTAAA 57.576 33.333 7.95 1.10 0.00 1.85
3025 3111 8.988064 TTCTTGACATCTAGTAGTTGCTAAAG 57.012 34.615 7.95 8.98 0.00 1.85
3026 3112 8.123639 TCTTGACATCTAGTAGTTGCTAAAGT 57.876 34.615 7.95 0.00 0.00 2.66
3027 3113 8.029522 TCTTGACATCTAGTAGTTGCTAAAGTG 58.970 37.037 7.95 0.00 0.00 3.16
3028 3114 7.228314 TGACATCTAGTAGTTGCTAAAGTGT 57.772 36.000 7.95 0.00 0.00 3.55
3029 3115 7.667557 TGACATCTAGTAGTTGCTAAAGTGTT 58.332 34.615 7.95 0.00 0.00 3.32
3030 3116 8.799367 TGACATCTAGTAGTTGCTAAAGTGTTA 58.201 33.333 7.95 0.00 0.00 2.41
3031 3117 9.635520 GACATCTAGTAGTTGCTAAAGTGTTAA 57.364 33.333 7.95 0.00 0.00 2.01
3032 3118 9.640963 ACATCTAGTAGTTGCTAAAGTGTTAAG 57.359 33.333 7.95 0.00 0.00 1.85
3033 3119 9.856488 CATCTAGTAGTTGCTAAAGTGTTAAGA 57.144 33.333 0.00 0.00 0.00 2.10
3036 3122 9.856488 CTAGTAGTTGCTAAAGTGTTAAGATCA 57.144 33.333 0.00 0.00 0.00 2.92
3038 3124 9.555727 AGTAGTTGCTAAAGTGTTAAGATCAAA 57.444 29.630 0.00 0.00 0.00 2.69
3041 3127 7.855904 AGTTGCTAAAGTGTTAAGATCAAAACG 59.144 33.333 0.00 0.00 0.00 3.60
3042 3128 7.254227 TGCTAAAGTGTTAAGATCAAAACGT 57.746 32.000 0.00 0.00 0.00 3.99
3043 3129 7.699566 TGCTAAAGTGTTAAGATCAAAACGTT 58.300 30.769 0.00 0.00 0.00 3.99
3044 3130 7.642194 TGCTAAAGTGTTAAGATCAAAACGTTG 59.358 33.333 0.00 0.00 35.95 4.10
3056 3142 5.966636 TCAAAACGTTGATGATCGATAGG 57.033 39.130 0.00 0.00 38.88 2.57
3057 3143 4.808895 TCAAAACGTTGATGATCGATAGGG 59.191 41.667 0.00 0.00 38.88 3.53
3058 3144 3.386768 AACGTTGATGATCGATAGGGG 57.613 47.619 0.00 0.00 0.00 4.79
3059 3145 1.618837 ACGTTGATGATCGATAGGGGG 59.381 52.381 0.00 0.00 0.00 5.40
3060 3146 1.618837 CGTTGATGATCGATAGGGGGT 59.381 52.381 0.00 0.00 0.00 4.95
3061 3147 2.037251 CGTTGATGATCGATAGGGGGTT 59.963 50.000 0.00 0.00 0.00 4.11
3062 3148 3.494398 CGTTGATGATCGATAGGGGGTTT 60.494 47.826 0.00 0.00 0.00 3.27
3063 3149 3.769739 TGATGATCGATAGGGGGTTTG 57.230 47.619 0.00 0.00 0.00 2.93
3064 3150 3.045634 TGATGATCGATAGGGGGTTTGT 58.954 45.455 0.00 0.00 0.00 2.83
3065 3151 3.458118 TGATGATCGATAGGGGGTTTGTT 59.542 43.478 0.00 0.00 0.00 2.83
3066 3152 3.553828 TGATCGATAGGGGGTTTGTTC 57.446 47.619 0.00 0.00 0.00 3.18
3067 3153 2.841266 TGATCGATAGGGGGTTTGTTCA 59.159 45.455 0.00 0.00 0.00 3.18
3068 3154 3.264706 TGATCGATAGGGGGTTTGTTCAA 59.735 43.478 0.00 0.00 0.00 2.69
3069 3155 3.062122 TCGATAGGGGGTTTGTTCAAC 57.938 47.619 0.00 0.00 34.18 3.18
3070 3156 1.735571 CGATAGGGGGTTTGTTCAACG 59.264 52.381 0.00 0.00 36.05 4.10
3071 3157 2.089201 GATAGGGGGTTTGTTCAACGG 58.911 52.381 0.00 0.00 36.05 4.44
3072 3158 1.138568 TAGGGGGTTTGTTCAACGGA 58.861 50.000 0.00 0.00 36.05 4.69
3073 3159 0.259356 AGGGGGTTTGTTCAACGGAA 59.741 50.000 0.00 0.00 36.05 4.30
3074 3160 1.112950 GGGGGTTTGTTCAACGGAAA 58.887 50.000 0.00 0.00 36.05 3.13
3075 3161 1.689813 GGGGGTTTGTTCAACGGAAAT 59.310 47.619 0.00 0.00 36.05 2.17
3076 3162 2.103432 GGGGGTTTGTTCAACGGAAATT 59.897 45.455 0.00 0.00 36.05 1.82
3077 3163 3.432467 GGGGGTTTGTTCAACGGAAATTT 60.432 43.478 0.00 0.00 36.05 1.82
3078 3164 3.558006 GGGGTTTGTTCAACGGAAATTTG 59.442 43.478 0.00 0.00 36.05 2.32
3079 3165 4.185394 GGGTTTGTTCAACGGAAATTTGT 58.815 39.130 0.00 0.00 36.05 2.83
3080 3166 5.349809 GGGTTTGTTCAACGGAAATTTGTA 58.650 37.500 0.00 0.00 36.05 2.41
3081 3167 5.460748 GGGTTTGTTCAACGGAAATTTGTAG 59.539 40.000 0.00 0.00 36.05 2.74
3082 3168 6.267070 GGTTTGTTCAACGGAAATTTGTAGA 58.733 36.000 0.00 0.00 36.05 2.59
3083 3169 6.416750 GGTTTGTTCAACGGAAATTTGTAGAG 59.583 38.462 0.00 0.00 36.05 2.43
3084 3170 6.928979 TTGTTCAACGGAAATTTGTAGAGA 57.071 33.333 0.00 0.00 34.13 3.10
3085 3171 7.504924 TTGTTCAACGGAAATTTGTAGAGAT 57.495 32.000 0.00 0.00 34.13 2.75
3086 3172 7.129109 TGTTCAACGGAAATTTGTAGAGATC 57.871 36.000 0.00 0.00 34.13 2.75
3087 3173 6.708502 TGTTCAACGGAAATTTGTAGAGATCA 59.291 34.615 0.00 0.00 34.13 2.92
3088 3174 7.227711 TGTTCAACGGAAATTTGTAGAGATCAA 59.772 33.333 0.00 0.00 34.13 2.57
3089 3175 7.737972 TCAACGGAAATTTGTAGAGATCAAA 57.262 32.000 0.00 0.00 38.77 2.69
3090 3176 8.160521 TCAACGGAAATTTGTAGAGATCAAAA 57.839 30.769 0.00 0.00 38.11 2.44
3091 3177 8.792633 TCAACGGAAATTTGTAGAGATCAAAAT 58.207 29.630 0.00 0.00 38.11 1.82
3092 3178 8.853345 CAACGGAAATTTGTAGAGATCAAAATG 58.147 33.333 0.00 0.00 38.11 2.32
3093 3179 8.110860 ACGGAAATTTGTAGAGATCAAAATGT 57.889 30.769 0.00 0.00 38.11 2.71
3094 3180 9.226606 ACGGAAATTTGTAGAGATCAAAATGTA 57.773 29.630 0.00 0.00 38.11 2.29
3095 3181 9.708222 CGGAAATTTGTAGAGATCAAAATGTAG 57.292 33.333 0.00 0.00 38.11 2.74
3096 3182 9.508567 GGAAATTTGTAGAGATCAAAATGTAGC 57.491 33.333 0.00 0.00 38.11 3.58
3097 3183 9.508567 GAAATTTGTAGAGATCAAAATGTAGCC 57.491 33.333 0.00 0.00 38.11 3.93
3098 3184 6.662414 TTTGTAGAGATCAAAATGTAGCCG 57.338 37.500 0.00 0.00 32.86 5.52
3099 3185 4.693283 TGTAGAGATCAAAATGTAGCCGG 58.307 43.478 0.00 0.00 0.00 6.13
3100 3186 3.914426 AGAGATCAAAATGTAGCCGGT 57.086 42.857 1.90 0.00 0.00 5.28
3101 3187 4.222124 AGAGATCAAAATGTAGCCGGTT 57.778 40.909 1.90 0.00 0.00 4.44
3102 3188 3.941483 AGAGATCAAAATGTAGCCGGTTG 59.059 43.478 1.90 0.00 0.00 3.77
3103 3189 2.423538 AGATCAAAATGTAGCCGGTTGC 59.576 45.455 1.90 0.00 41.71 4.17
3115 3201 3.793797 GCCGGTTGCTTGGTAAATTAT 57.206 42.857 1.90 0.00 36.87 1.28
3116 3202 4.904253 GCCGGTTGCTTGGTAAATTATA 57.096 40.909 1.90 0.00 36.87 0.98
3117 3203 4.855531 GCCGGTTGCTTGGTAAATTATAG 58.144 43.478 1.90 0.00 36.87 1.31
3118 3204 4.337274 GCCGGTTGCTTGGTAAATTATAGT 59.663 41.667 1.90 0.00 36.87 2.12
3119 3205 5.505159 GCCGGTTGCTTGGTAAATTATAGTC 60.505 44.000 1.90 0.00 36.87 2.59
3120 3206 5.277154 CCGGTTGCTTGGTAAATTATAGTCG 60.277 44.000 0.00 0.00 0.00 4.18
3121 3207 5.292589 CGGTTGCTTGGTAAATTATAGTCGT 59.707 40.000 0.00 0.00 0.00 4.34
3122 3208 6.476380 CGGTTGCTTGGTAAATTATAGTCGTA 59.524 38.462 0.00 0.00 0.00 3.43
3123 3209 7.515684 CGGTTGCTTGGTAAATTATAGTCGTAC 60.516 40.741 0.00 0.00 0.00 3.67
3124 3210 7.493645 GGTTGCTTGGTAAATTATAGTCGTACT 59.506 37.037 0.00 0.00 0.00 2.73
3125 3211 9.520204 GTTGCTTGGTAAATTATAGTCGTACTA 57.480 33.333 0.00 0.00 34.82 1.82
3127 3213 9.740239 TGCTTGGTAAATTATAGTCGTACTAAG 57.260 33.333 9.09 9.09 36.73 2.18
3128 3214 9.741647 GCTTGGTAAATTATAGTCGTACTAAGT 57.258 33.333 12.41 0.00 36.31 2.24
3135 3221 9.962783 AAATTATAGTCGTACTAAGTGATCCAC 57.037 33.333 0.00 0.00 33.89 4.02
3136 3222 5.670149 ATAGTCGTACTAAGTGATCCACG 57.330 43.478 0.00 0.00 34.43 4.94
3137 3223 3.603532 AGTCGTACTAAGTGATCCACGA 58.396 45.455 0.00 0.00 39.64 4.35
3139 3225 2.679837 TCGTACTAAGTGATCCACGACC 59.320 50.000 0.00 0.00 39.64 4.79
3140 3226 2.538333 CGTACTAAGTGATCCACGACCG 60.538 54.545 0.00 0.00 39.64 4.79
3141 3227 1.542492 ACTAAGTGATCCACGACCGT 58.458 50.000 0.00 0.00 39.64 4.83
3142 3228 1.201647 ACTAAGTGATCCACGACCGTG 59.798 52.381 14.89 14.89 45.02 4.94
3143 3229 1.201647 CTAAGTGATCCACGACCGTGT 59.798 52.381 19.34 3.80 44.02 4.49
3144 3230 0.319555 AAGTGATCCACGACCGTGTG 60.320 55.000 19.34 11.82 44.02 3.82
3145 3231 1.176619 AGTGATCCACGACCGTGTGA 61.177 55.000 19.34 15.95 44.02 3.58
3146 3232 0.108804 GTGATCCACGACCGTGTGAT 60.109 55.000 19.34 19.13 44.02 3.06
3147 3233 0.606096 TGATCCACGACCGTGTGATT 59.394 50.000 19.34 8.08 44.02 2.57
3148 3234 0.999406 GATCCACGACCGTGTGATTG 59.001 55.000 19.34 5.76 44.02 2.67
3149 3235 1.019278 ATCCACGACCGTGTGATTGC 61.019 55.000 19.34 0.00 44.02 3.56
3150 3236 1.958715 CCACGACCGTGTGATTGCA 60.959 57.895 19.34 0.00 44.02 4.08
3151 3237 1.204062 CACGACCGTGTGATTGCAC 59.796 57.895 13.77 0.00 42.55 4.57
3152 3238 1.959226 ACGACCGTGTGATTGCACC 60.959 57.895 0.00 0.00 44.51 5.01
3153 3239 1.958715 CGACCGTGTGATTGCACCA 60.959 57.895 0.00 0.00 44.51 4.17
3154 3240 1.502990 CGACCGTGTGATTGCACCAA 61.503 55.000 0.00 0.00 44.51 3.67
3155 3241 0.238289 GACCGTGTGATTGCACCAAG 59.762 55.000 0.00 0.00 44.51 3.61
3156 3242 1.172180 ACCGTGTGATTGCACCAAGG 61.172 55.000 0.00 0.00 44.51 3.61
3157 3243 0.888736 CCGTGTGATTGCACCAAGGA 60.889 55.000 0.00 0.00 44.51 3.36
3158 3244 0.238289 CGTGTGATTGCACCAAGGAC 59.762 55.000 0.00 0.00 44.51 3.85
3159 3245 0.598065 GTGTGATTGCACCAAGGACC 59.402 55.000 0.00 0.00 44.51 4.46
3160 3246 0.184692 TGTGATTGCACCAAGGACCA 59.815 50.000 0.00 0.00 44.51 4.02
3161 3247 0.598065 GTGATTGCACCAAGGACCAC 59.402 55.000 0.00 0.00 39.14 4.16
3162 3248 0.478072 TGATTGCACCAAGGACCACT 59.522 50.000 0.00 0.00 0.00 4.00
3163 3249 1.702401 TGATTGCACCAAGGACCACTA 59.298 47.619 0.00 0.00 0.00 2.74
3164 3250 2.308570 TGATTGCACCAAGGACCACTAT 59.691 45.455 0.00 0.00 0.00 2.12
3165 3251 2.198827 TTGCACCAAGGACCACTATG 57.801 50.000 0.00 0.00 0.00 2.23
3166 3252 1.064003 TGCACCAAGGACCACTATGT 58.936 50.000 0.00 0.00 0.00 2.29
3167 3253 2.261729 TGCACCAAGGACCACTATGTA 58.738 47.619 0.00 0.00 0.00 2.29
3168 3254 2.843730 TGCACCAAGGACCACTATGTAT 59.156 45.455 0.00 0.00 0.00 2.29
3169 3255 3.265737 TGCACCAAGGACCACTATGTATT 59.734 43.478 0.00 0.00 0.00 1.89
3170 3256 4.471747 TGCACCAAGGACCACTATGTATTA 59.528 41.667 0.00 0.00 0.00 0.98
3171 3257 5.045505 TGCACCAAGGACCACTATGTATTAA 60.046 40.000 0.00 0.00 0.00 1.40
3172 3258 5.527582 GCACCAAGGACCACTATGTATTAAG 59.472 44.000 0.00 0.00 0.00 1.85
3173 3259 6.631766 GCACCAAGGACCACTATGTATTAAGA 60.632 42.308 0.00 0.00 0.00 2.10
3174 3260 7.335627 CACCAAGGACCACTATGTATTAAGAA 58.664 38.462 0.00 0.00 0.00 2.52
3175 3261 7.993183 CACCAAGGACCACTATGTATTAAGAAT 59.007 37.037 0.00 0.00 0.00 2.40
3176 3262 9.220906 ACCAAGGACCACTATGTATTAAGAATA 57.779 33.333 0.00 0.00 0.00 1.75
3195 3281 8.908786 AAGAATATTTTGTCTCTCAAGTGTCA 57.091 30.769 0.00 0.00 37.35 3.58
3196 3282 8.908786 AGAATATTTTGTCTCTCAAGTGTCAA 57.091 30.769 0.00 0.00 37.35 3.18
3197 3283 9.342308 AGAATATTTTGTCTCTCAAGTGTCAAA 57.658 29.630 0.00 2.03 37.35 2.69
3202 3288 8.675705 TTTTGTCTCTCAAGTGTCAAATATGA 57.324 30.769 5.70 0.00 37.35 2.15
3203 3289 8.675705 TTTGTCTCTCAAGTGTCAAATATGAA 57.324 30.769 2.03 0.00 35.89 2.57
3204 3290 8.675705 TTGTCTCTCAAGTGTCAAATATGAAA 57.324 30.769 0.00 0.00 37.30 2.69
3205 3291 8.853077 TGTCTCTCAAGTGTCAAATATGAAAT 57.147 30.769 0.00 0.00 37.30 2.17
3206 3292 9.942850 TGTCTCTCAAGTGTCAAATATGAAATA 57.057 29.630 0.00 0.00 37.30 1.40
3228 3314 4.884668 AAACTCGTTATCTTGACCCAGA 57.115 40.909 0.00 0.00 0.00 3.86
3293 3379 0.441921 GCTCTCTGCGTGCTTTTCTC 59.558 55.000 0.00 0.00 0.00 2.87
3295 3381 0.392706 TCTCTGCGTGCTTTTCTCCA 59.607 50.000 0.00 0.00 0.00 3.86
3348 3434 4.332828 CAAGAGGGAACGGGTTAGAATTT 58.667 43.478 0.00 0.00 0.00 1.82
3368 3454 2.794355 CGACGAAATTGCCGCGCTA 61.794 57.895 5.56 0.00 0.00 4.26
3372 3458 1.136690 CGAAATTGCCGCGCTAGATA 58.863 50.000 5.56 0.00 0.00 1.98
3398 3484 1.077429 AGATTGCCGCCCTTTCTCC 60.077 57.895 0.00 0.00 0.00 3.71
3401 3487 2.478335 ATTGCCGCCCTTTCTCCGAA 62.478 55.000 0.00 0.00 0.00 4.30
3416 3502 1.452108 CGAAGGGGAATGGGCTCAC 60.452 63.158 0.00 0.00 0.00 3.51
3425 3511 1.987807 AATGGGCTCACCGCTATGCT 61.988 55.000 0.00 0.00 44.64 3.79
3434 3520 3.088532 TCACCGCTATGCTTTGGAAAAT 58.911 40.909 0.00 0.00 0.00 1.82
3444 3530 4.473444 TGCTTTGGAAAATCAAGTCCTCT 58.527 39.130 0.00 0.00 34.77 3.69
3446 3532 4.764308 GCTTTGGAAAATCAAGTCCTCTCT 59.236 41.667 0.00 0.00 34.77 3.10
3455 3541 1.036707 AAGTCCTCTCTATCCTGCGC 58.963 55.000 0.00 0.00 0.00 6.09
3507 3593 3.188873 CGGCGTTAAATGGGTGACTAAAA 59.811 43.478 0.00 0.00 0.00 1.52
3512 3598 6.093633 GCGTTAAATGGGTGACTAAAAGAGAT 59.906 38.462 0.00 0.00 0.00 2.75
3513 3599 7.279313 GCGTTAAATGGGTGACTAAAAGAGATA 59.721 37.037 0.00 0.00 0.00 1.98
3536 3622 2.311124 ATACCAGCTACTTTCACGCC 57.689 50.000 0.00 0.00 0.00 5.68
3574 3660 3.134574 ACGGAAGTGCTCCATTTTGTA 57.865 42.857 0.00 0.00 45.74 2.41
3575 3661 3.686016 ACGGAAGTGCTCCATTTTGTAT 58.314 40.909 0.00 0.00 45.74 2.29
3578 3664 4.034510 CGGAAGTGCTCCATTTTGTATCTC 59.965 45.833 0.00 0.00 45.74 2.75
3588 3674 6.364701 TCCATTTTGTATCTCCAATCCGATT 58.635 36.000 0.00 0.00 0.00 3.34
3623 3709 3.913799 TGACCCAGGAGGAAATAGTCAAA 59.086 43.478 0.00 0.00 39.89 2.69
3635 3721 8.385898 AGGAAATAGTCAAACACATTTACGAA 57.614 30.769 0.00 0.00 28.86 3.85
3642 3728 8.154649 AGTCAAACACATTTACGAATTTCTCT 57.845 30.769 0.00 0.00 0.00 3.10
3665 3751 2.281900 CTTTTGGGGACGGCCGAA 60.282 61.111 35.90 12.97 33.83 4.30
3704 3790 0.186143 GGGAGGATTTGTGGGATCCC 59.814 60.000 25.22 25.22 43.36 3.85
3713 3799 4.137615 TGGGATCCCTCGGAGCGA 62.138 66.667 31.05 5.65 39.27 4.93
3752 3838 3.007635 CGAAGGGCTCGTTTTATCCTTT 58.992 45.455 0.00 0.00 42.89 3.11
3753 3839 4.186159 CGAAGGGCTCGTTTTATCCTTTA 58.814 43.478 0.00 0.00 42.89 1.85
3758 3844 3.630312 GGCTCGTTTTATCCTTTATGCCA 59.370 43.478 0.00 0.00 36.91 4.92
3777 3863 1.227002 GAGGAGATCGACAACGCCC 60.227 63.158 0.00 0.00 39.58 6.13
3782 3868 1.144057 GATCGACAACGCCCTGGAT 59.856 57.895 0.00 0.00 39.58 3.41
3799 3885 5.065914 CCTGGATGATATGAAAACGGACAT 58.934 41.667 0.00 0.00 0.00 3.06
3803 3889 3.615155 TGATATGAAAACGGACATGGCA 58.385 40.909 0.00 0.00 0.00 4.92
3806 3892 0.466372 TGAAAACGGACATGGCACCA 60.466 50.000 0.00 0.00 0.00 4.17
3809 3895 4.722700 ACGGACATGGCACCAGGC 62.723 66.667 0.00 0.00 43.74 4.85
3851 3937 5.453198 GGAGTTTTTCAAGAAATTCTGGCCA 60.453 40.000 4.71 4.71 0.00 5.36
3866 3952 2.137810 GGCCATGCCTTAAACACCTA 57.862 50.000 0.00 0.00 46.69 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.356527 GAAACGGTGGGGATCGTTCG 61.357 60.000 0.00 0.00 0.00 3.95
12 13 0.392461 CATGAAACGGTGGGGATCGT 60.392 55.000 0.00 0.00 0.00 3.73
41 42 0.536724 TCATGCAGCATGGACGTAGT 59.463 50.000 30.92 0.00 41.42 2.73
208 248 5.488341 ACCAACTCAAGTCCACATATGTAC 58.512 41.667 8.32 4.26 0.00 2.90
209 249 5.730550 GACCAACTCAAGTCCACATATGTA 58.269 41.667 8.32 0.00 0.00 2.29
210 250 4.579869 GACCAACTCAAGTCCACATATGT 58.420 43.478 1.41 1.41 0.00 2.29
233 273 0.600782 AACAAATGCGCAGGCCAAAG 60.601 50.000 18.32 3.71 38.85 2.77
296 336 2.436646 CGGCACCACCAGATCACC 60.437 66.667 0.00 0.00 39.03 4.02
388 439 3.318557 GCGGATTACTCCTACTGCTACTT 59.681 47.826 0.00 0.00 39.65 2.24
389 440 2.885894 GCGGATTACTCCTACTGCTACT 59.114 50.000 0.00 0.00 39.65 2.57
390 441 2.885894 AGCGGATTACTCCTACTGCTAC 59.114 50.000 0.00 0.00 39.65 3.58
391 442 3.147629 GAGCGGATTACTCCTACTGCTA 58.852 50.000 0.00 0.00 39.65 3.49
392 443 1.957877 GAGCGGATTACTCCTACTGCT 59.042 52.381 0.00 0.00 39.65 4.24
393 444 1.335142 CGAGCGGATTACTCCTACTGC 60.335 57.143 0.00 0.00 39.65 4.40
394 445 1.335142 GCGAGCGGATTACTCCTACTG 60.335 57.143 0.00 0.00 39.65 2.74
478 529 3.324930 TCCAGTCCAGCCAGCCAG 61.325 66.667 0.00 0.00 0.00 4.85
479 530 3.324930 CTCCAGTCCAGCCAGCCA 61.325 66.667 0.00 0.00 0.00 4.75
480 531 3.325753 ACTCCAGTCCAGCCAGCC 61.326 66.667 0.00 0.00 0.00 4.85
603 654 1.160137 CTTTGAGAGGAAAGGCACGG 58.840 55.000 0.00 0.00 30.50 4.94
649 700 2.045340 AGAAATGAACGGGGCCGG 60.045 61.111 9.88 9.88 44.69 6.13
771 822 3.127425 AGGAAGGAAGGAAGAAACACG 57.873 47.619 0.00 0.00 0.00 4.49
783 834 4.764491 AGAAACCTAGAGGAAGGAAGGAA 58.236 43.478 1.60 0.00 39.15 3.36
844 895 2.408050 CTCCGACTTGAGTTGAGTTGG 58.592 52.381 4.48 4.48 46.06 3.77
946 997 1.592081 TCGTTAACGGAACCAAACGTG 59.408 47.619 26.51 0.00 43.31 4.49
957 1008 2.607187 AGAGCATCAAGTCGTTAACGG 58.393 47.619 26.51 11.50 37.82 4.44
960 1011 4.720649 AGCTAGAGCATCAAGTCGTTAA 57.279 40.909 4.01 0.00 45.16 2.01
962 1013 3.194542 AGAAGCTAGAGCATCAAGTCGTT 59.805 43.478 9.24 0.00 45.16 3.85
964 1015 3.435105 AGAAGCTAGAGCATCAAGTCG 57.565 47.619 9.24 0.00 45.16 4.18
965 1016 4.119136 GGAAGAAGCTAGAGCATCAAGTC 58.881 47.826 9.24 3.79 45.16 3.01
966 1017 3.774216 AGGAAGAAGCTAGAGCATCAAGT 59.226 43.478 9.24 0.00 45.16 3.16
967 1018 4.405116 AGGAAGAAGCTAGAGCATCAAG 57.595 45.455 9.24 0.00 45.16 3.02
968 1019 4.511527 CAAGGAAGAAGCTAGAGCATCAA 58.488 43.478 9.24 0.00 45.16 2.57
969 1020 3.681034 GCAAGGAAGAAGCTAGAGCATCA 60.681 47.826 9.24 0.00 45.16 3.07
970 1021 2.871633 GCAAGGAAGAAGCTAGAGCATC 59.128 50.000 4.01 1.08 45.16 3.91
971 1022 2.741228 CGCAAGGAAGAAGCTAGAGCAT 60.741 50.000 4.01 0.00 45.16 3.79
972 1023 1.404717 CGCAAGGAAGAAGCTAGAGCA 60.405 52.381 4.01 0.00 45.16 4.26
973 1024 1.285578 CGCAAGGAAGAAGCTAGAGC 58.714 55.000 0.00 0.00 42.49 4.09
974 1025 1.134848 AGCGCAAGGAAGAAGCTAGAG 60.135 52.381 11.47 0.00 36.28 2.43
975 1026 0.898320 AGCGCAAGGAAGAAGCTAGA 59.102 50.000 11.47 0.00 36.28 2.43
989 1040 2.382746 GCAGACATGAACGAGCGCA 61.383 57.895 11.47 0.00 0.00 6.09
1000 1051 1.530771 GCCCCATCTCTGCAGACAT 59.469 57.895 13.74 5.28 0.00 3.06
1005 1056 4.783621 GCACGCCCCATCTCTGCA 62.784 66.667 0.00 0.00 0.00 4.41
1214 1265 2.440980 GGCATGGCTTCACCTCCC 60.441 66.667 12.86 0.00 40.22 4.30
1342 1393 7.048512 TGACGTACGATGGAGATATCAGATAT 58.951 38.462 24.41 2.23 0.00 1.63
1343 1394 6.403878 TGACGTACGATGGAGATATCAGATA 58.596 40.000 24.41 0.00 0.00 1.98
1344 1395 5.246307 TGACGTACGATGGAGATATCAGAT 58.754 41.667 24.41 0.00 0.00 2.90
1345 1396 4.638304 TGACGTACGATGGAGATATCAGA 58.362 43.478 24.41 0.00 0.00 3.27
1346 1397 5.447954 GGATGACGTACGATGGAGATATCAG 60.448 48.000 24.41 0.00 0.00 2.90
1347 1398 4.395231 GGATGACGTACGATGGAGATATCA 59.605 45.833 24.41 11.97 0.00 2.15
1348 1399 4.201930 GGGATGACGTACGATGGAGATATC 60.202 50.000 24.41 6.01 0.00 1.63
1370 1421 6.480320 GCAGTATCTCAACCAACTTATACAGG 59.520 42.308 0.00 0.00 0.00 4.00
1454 1505 3.081061 TGGGACTGTTCAATCCATTTCG 58.919 45.455 2.82 0.00 36.65 3.46
1462 1513 1.609208 GCACACTGGGACTGTTCAAT 58.391 50.000 0.00 0.00 38.84 2.57
1475 1526 3.616721 AGAGTTCGGGCGCACACT 61.617 61.111 11.77 6.35 0.00 3.55
1489 1540 2.863739 TCTGCATCGTTAACGTCAGAG 58.136 47.619 28.32 20.56 40.80 3.35
1549 1600 3.064207 GTCTGGAATAAACAGTGTGCGA 58.936 45.455 0.00 0.00 37.25 5.10
1704 1758 2.350522 GATCAAGATCAACGTGCAGGT 58.649 47.619 6.15 6.15 37.74 4.00
1705 1759 1.325640 CGATCAAGATCAACGTGCAGG 59.674 52.381 4.53 4.53 37.69 4.85
1707 1761 1.358877 CCGATCAAGATCAACGTGCA 58.641 50.000 10.39 0.00 37.69 4.57
1785 1840 0.537653 TGACACCGAACCAACACAGA 59.462 50.000 0.00 0.00 0.00 3.41
1788 1847 0.655733 CACTGACACCGAACCAACAC 59.344 55.000 0.00 0.00 0.00 3.32
1843 1903 1.613836 AGAACTCAGCTTGGCCAAAG 58.386 50.000 20.91 16.18 39.07 2.77
1879 1939 4.535526 ACTCAAACCAAAACAACTTGCT 57.464 36.364 0.00 0.00 0.00 3.91
1913 1973 4.499188 CCTGAAGCCATGCATTATTGTCAG 60.499 45.833 0.00 6.81 0.00 3.51
1998 2058 2.973899 GCCTGCTTCCTCACGAGA 59.026 61.111 0.00 0.00 0.00 4.04
2131 2211 2.461903 TCGTTGATCAACACGAACGAA 58.538 42.857 32.06 10.28 41.20 3.85
2158 2238 0.246374 CTTGAAATCACGTCGACGCG 60.246 55.000 35.92 27.84 44.43 6.01
2159 2239 1.057636 TCTTGAAATCACGTCGACGC 58.942 50.000 35.92 19.63 44.43 5.19
2162 2242 4.364860 TCAAACTCTTGAAATCACGTCGA 58.635 39.130 0.00 0.00 38.65 4.20
2165 2245 7.672983 ACATATCAAACTCTTGAAATCACGT 57.327 32.000 0.00 0.00 44.64 4.49
2166 2246 7.423598 CGAACATATCAAACTCTTGAAATCACG 59.576 37.037 0.00 0.00 44.64 4.35
2167 2247 7.217070 GCGAACATATCAAACTCTTGAAATCAC 59.783 37.037 0.00 0.00 44.64 3.06
2168 2248 7.119699 AGCGAACATATCAAACTCTTGAAATCA 59.880 33.333 0.00 0.00 44.64 2.57
2169 2249 7.427606 CAGCGAACATATCAAACTCTTGAAATC 59.572 37.037 0.00 0.00 44.64 2.17
2174 2254 4.093998 AGCAGCGAACATATCAAACTCTTG 59.906 41.667 0.00 0.00 0.00 3.02
2175 2255 4.093998 CAGCAGCGAACATATCAAACTCTT 59.906 41.667 0.00 0.00 0.00 2.85
2176 2256 3.620374 CAGCAGCGAACATATCAAACTCT 59.380 43.478 0.00 0.00 0.00 3.24
2189 2269 0.039256 GGAAAATGCACAGCAGCGAA 60.039 50.000 0.00 0.00 43.65 4.70
2207 2287 1.065102 CAATTCTCTCCTGCATTGCGG 59.935 52.381 10.65 10.65 34.23 5.69
2743 2826 3.173240 GCACGTCGACTTCCTCGC 61.173 66.667 14.70 0.00 42.62 5.03
2888 2971 1.433879 GTCCGTCCGTCTCCATCTG 59.566 63.158 0.00 0.00 0.00 2.90
2984 3070 4.627900 GTCAAGAAAGAAAACCCGCAAAAA 59.372 37.500 0.00 0.00 0.00 1.94
2985 3071 4.177783 GTCAAGAAAGAAAACCCGCAAAA 58.822 39.130 0.00 0.00 0.00 2.44
2986 3072 3.193691 TGTCAAGAAAGAAAACCCGCAAA 59.806 39.130 0.00 0.00 0.00 3.68
2987 3073 2.755655 TGTCAAGAAAGAAAACCCGCAA 59.244 40.909 0.00 0.00 0.00 4.85
2988 3074 2.370349 TGTCAAGAAAGAAAACCCGCA 58.630 42.857 0.00 0.00 0.00 5.69
2989 3075 3.253432 AGATGTCAAGAAAGAAAACCCGC 59.747 43.478 0.00 0.00 0.00 6.13
2990 3076 5.701290 ACTAGATGTCAAGAAAGAAAACCCG 59.299 40.000 0.00 0.00 0.00 5.28
2991 3077 7.878644 ACTACTAGATGTCAAGAAAGAAAACCC 59.121 37.037 0.00 0.00 0.00 4.11
2992 3078 8.834749 ACTACTAGATGTCAAGAAAGAAAACC 57.165 34.615 0.00 0.00 0.00 3.27
2994 3080 8.774586 GCAACTACTAGATGTCAAGAAAGAAAA 58.225 33.333 0.00 0.00 0.00 2.29
2995 3081 8.150945 AGCAACTACTAGATGTCAAGAAAGAAA 58.849 33.333 0.00 0.00 0.00 2.52
2996 3082 7.671302 AGCAACTACTAGATGTCAAGAAAGAA 58.329 34.615 0.00 0.00 0.00 2.52
2997 3083 7.233389 AGCAACTACTAGATGTCAAGAAAGA 57.767 36.000 0.00 0.00 0.00 2.52
2998 3084 8.988064 TTAGCAACTACTAGATGTCAAGAAAG 57.012 34.615 0.00 0.00 0.00 2.62
2999 3085 9.424319 CTTTAGCAACTACTAGATGTCAAGAAA 57.576 33.333 0.00 0.00 0.00 2.52
3000 3086 8.585881 ACTTTAGCAACTACTAGATGTCAAGAA 58.414 33.333 0.00 0.00 0.00 2.52
3001 3087 8.029522 CACTTTAGCAACTACTAGATGTCAAGA 58.970 37.037 0.00 0.00 0.00 3.02
3002 3088 7.815068 ACACTTTAGCAACTACTAGATGTCAAG 59.185 37.037 0.00 0.00 0.00 3.02
3003 3089 7.667557 ACACTTTAGCAACTACTAGATGTCAA 58.332 34.615 0.00 0.00 0.00 3.18
3004 3090 7.228314 ACACTTTAGCAACTACTAGATGTCA 57.772 36.000 0.00 0.00 0.00 3.58
3005 3091 9.635520 TTAACACTTTAGCAACTACTAGATGTC 57.364 33.333 0.00 0.00 0.00 3.06
3006 3092 9.640963 CTTAACACTTTAGCAACTACTAGATGT 57.359 33.333 0.00 0.00 0.00 3.06
3007 3093 9.856488 TCTTAACACTTTAGCAACTACTAGATG 57.144 33.333 0.00 0.00 0.00 2.90
3010 3096 9.856488 TGATCTTAACACTTTAGCAACTACTAG 57.144 33.333 0.00 0.00 0.00 2.57
3012 3098 9.555727 TTTGATCTTAACACTTTAGCAACTACT 57.444 29.630 0.00 0.00 0.00 2.57
3015 3101 7.855904 CGTTTTGATCTTAACACTTTAGCAACT 59.144 33.333 9.95 0.00 0.00 3.16
3016 3102 7.642586 ACGTTTTGATCTTAACACTTTAGCAAC 59.357 33.333 9.95 0.00 0.00 4.17
3017 3103 7.699566 ACGTTTTGATCTTAACACTTTAGCAA 58.300 30.769 9.95 0.00 0.00 3.91
3018 3104 7.254227 ACGTTTTGATCTTAACACTTTAGCA 57.746 32.000 9.95 0.00 0.00 3.49
3019 3105 7.853929 TCAACGTTTTGATCTTAACACTTTAGC 59.146 33.333 0.00 0.00 36.79 3.09
3034 3120 4.808895 CCCTATCGATCATCAACGTTTTGA 59.191 41.667 0.00 11.85 45.93 2.69
3035 3121 4.024893 CCCCTATCGATCATCAACGTTTTG 60.025 45.833 0.00 0.00 0.00 2.44
3036 3122 4.127171 CCCCTATCGATCATCAACGTTTT 58.873 43.478 0.00 0.00 0.00 2.43
3037 3123 3.494398 CCCCCTATCGATCATCAACGTTT 60.494 47.826 0.00 0.00 0.00 3.60
3038 3124 2.037251 CCCCCTATCGATCATCAACGTT 59.963 50.000 0.00 0.00 0.00 3.99
3039 3125 1.618837 CCCCCTATCGATCATCAACGT 59.381 52.381 0.00 0.00 0.00 3.99
3040 3126 1.618837 ACCCCCTATCGATCATCAACG 59.381 52.381 0.00 0.00 0.00 4.10
3041 3127 3.771577 AACCCCCTATCGATCATCAAC 57.228 47.619 0.00 0.00 0.00 3.18
3042 3128 3.458118 ACAAACCCCCTATCGATCATCAA 59.542 43.478 0.00 0.00 0.00 2.57
3043 3129 3.045634 ACAAACCCCCTATCGATCATCA 58.954 45.455 0.00 0.00 0.00 3.07
3044 3130 3.771577 ACAAACCCCCTATCGATCATC 57.228 47.619 0.00 0.00 0.00 2.92
3045 3131 3.458118 TGAACAAACCCCCTATCGATCAT 59.542 43.478 0.00 0.00 0.00 2.45
3046 3132 2.841266 TGAACAAACCCCCTATCGATCA 59.159 45.455 0.00 0.00 0.00 2.92
3047 3133 3.553828 TGAACAAACCCCCTATCGATC 57.446 47.619 0.00 0.00 0.00 3.69
3048 3134 3.617284 GTTGAACAAACCCCCTATCGAT 58.383 45.455 2.16 2.16 32.13 3.59
3049 3135 2.613474 CGTTGAACAAACCCCCTATCGA 60.613 50.000 0.00 0.00 35.13 3.59
3050 3136 1.735571 CGTTGAACAAACCCCCTATCG 59.264 52.381 0.00 0.00 35.13 2.92
3051 3137 2.089201 CCGTTGAACAAACCCCCTATC 58.911 52.381 0.00 0.00 35.13 2.08
3052 3138 1.706305 TCCGTTGAACAAACCCCCTAT 59.294 47.619 0.00 0.00 35.13 2.57
3053 3139 1.138568 TCCGTTGAACAAACCCCCTA 58.861 50.000 0.00 0.00 35.13 3.53
3054 3140 0.259356 TTCCGTTGAACAAACCCCCT 59.741 50.000 0.00 0.00 35.13 4.79
3055 3141 1.112950 TTTCCGTTGAACAAACCCCC 58.887 50.000 0.00 0.00 35.13 5.40
3056 3142 3.462483 AATTTCCGTTGAACAAACCCC 57.538 42.857 0.00 0.00 35.13 4.95
3057 3143 4.185394 ACAAATTTCCGTTGAACAAACCC 58.815 39.130 0.00 0.00 35.13 4.11
3058 3144 6.267070 TCTACAAATTTCCGTTGAACAAACC 58.733 36.000 0.00 0.00 35.13 3.27
3059 3145 7.190871 TCTCTACAAATTTCCGTTGAACAAAC 58.809 34.615 0.00 0.00 35.25 2.93
3060 3146 7.323049 TCTCTACAAATTTCCGTTGAACAAA 57.677 32.000 0.00 0.00 0.00 2.83
3061 3147 6.928979 TCTCTACAAATTTCCGTTGAACAA 57.071 33.333 0.00 0.00 0.00 2.83
3062 3148 6.708502 TGATCTCTACAAATTTCCGTTGAACA 59.291 34.615 0.00 0.00 0.00 3.18
3063 3149 7.129109 TGATCTCTACAAATTTCCGTTGAAC 57.871 36.000 0.00 0.00 0.00 3.18
3064 3150 7.737972 TTGATCTCTACAAATTTCCGTTGAA 57.262 32.000 0.00 0.00 0.00 2.69
3065 3151 7.737972 TTTGATCTCTACAAATTTCCGTTGA 57.262 32.000 0.00 0.00 33.25 3.18
3066 3152 8.853345 CATTTTGATCTCTACAAATTTCCGTTG 58.147 33.333 0.00 0.00 37.15 4.10
3067 3153 8.576442 ACATTTTGATCTCTACAAATTTCCGTT 58.424 29.630 0.00 0.00 37.15 4.44
3068 3154 8.110860 ACATTTTGATCTCTACAAATTTCCGT 57.889 30.769 0.00 0.00 37.15 4.69
3069 3155 9.708222 CTACATTTTGATCTCTACAAATTTCCG 57.292 33.333 0.00 0.00 37.15 4.30
3070 3156 9.508567 GCTACATTTTGATCTCTACAAATTTCC 57.491 33.333 0.00 0.00 37.15 3.13
3071 3157 9.508567 GGCTACATTTTGATCTCTACAAATTTC 57.491 33.333 0.00 0.00 37.15 2.17
3072 3158 8.184192 CGGCTACATTTTGATCTCTACAAATTT 58.816 33.333 0.00 0.00 37.15 1.82
3073 3159 7.201732 CCGGCTACATTTTGATCTCTACAAATT 60.202 37.037 0.00 0.00 37.15 1.82
3074 3160 6.260936 CCGGCTACATTTTGATCTCTACAAAT 59.739 38.462 0.00 0.00 37.15 2.32
3075 3161 5.584649 CCGGCTACATTTTGATCTCTACAAA 59.415 40.000 0.00 0.00 35.81 2.83
3076 3162 5.116180 CCGGCTACATTTTGATCTCTACAA 58.884 41.667 0.00 0.00 0.00 2.41
3077 3163 4.161565 ACCGGCTACATTTTGATCTCTACA 59.838 41.667 0.00 0.00 0.00 2.74
3078 3164 4.694339 ACCGGCTACATTTTGATCTCTAC 58.306 43.478 0.00 0.00 0.00 2.59
3079 3165 5.116180 CAACCGGCTACATTTTGATCTCTA 58.884 41.667 0.00 0.00 0.00 2.43
3080 3166 3.914426 ACCGGCTACATTTTGATCTCT 57.086 42.857 0.00 0.00 0.00 3.10
3081 3167 3.487544 GCAACCGGCTACATTTTGATCTC 60.488 47.826 0.00 0.00 40.25 2.75
3082 3168 2.423538 GCAACCGGCTACATTTTGATCT 59.576 45.455 0.00 0.00 40.25 2.75
3083 3169 2.797491 GCAACCGGCTACATTTTGATC 58.203 47.619 0.00 0.00 40.25 2.92
3084 3170 2.939460 GCAACCGGCTACATTTTGAT 57.061 45.000 0.00 0.00 40.25 2.57
3095 3181 3.793797 ATAATTTACCAAGCAACCGGC 57.206 42.857 0.00 0.00 45.30 6.13
3096 3182 5.277154 CGACTATAATTTACCAAGCAACCGG 60.277 44.000 0.00 0.00 0.00 5.28
3097 3183 5.292589 ACGACTATAATTTACCAAGCAACCG 59.707 40.000 0.00 0.00 0.00 4.44
3098 3184 6.673154 ACGACTATAATTTACCAAGCAACC 57.327 37.500 0.00 0.00 0.00 3.77
3099 3185 8.416485 AGTACGACTATAATTTACCAAGCAAC 57.584 34.615 0.00 0.00 0.00 4.17
3101 3187 9.740239 CTTAGTACGACTATAATTTACCAAGCA 57.260 33.333 0.00 0.00 29.64 3.91
3102 3188 9.741647 ACTTAGTACGACTATAATTTACCAAGC 57.258 33.333 0.00 0.00 29.64 4.01
3109 3195 9.962783 GTGGATCACTTAGTACGACTATAATTT 57.037 33.333 0.00 0.00 29.64 1.82
3110 3196 8.288208 CGTGGATCACTTAGTACGACTATAATT 58.712 37.037 0.00 0.00 33.78 1.40
3111 3197 7.658982 TCGTGGATCACTTAGTACGACTATAAT 59.341 37.037 3.58 0.00 35.88 1.28
3112 3198 6.986231 TCGTGGATCACTTAGTACGACTATAA 59.014 38.462 3.58 0.00 35.88 0.98
3113 3199 6.515832 TCGTGGATCACTTAGTACGACTATA 58.484 40.000 3.58 0.00 35.88 1.31
3114 3200 5.363101 TCGTGGATCACTTAGTACGACTAT 58.637 41.667 3.58 0.00 35.88 2.12
3115 3201 4.758688 TCGTGGATCACTTAGTACGACTA 58.241 43.478 3.58 0.00 35.88 2.59
3116 3202 3.603532 TCGTGGATCACTTAGTACGACT 58.396 45.455 3.58 0.00 35.88 4.18
3118 3204 2.679837 GGTCGTGGATCACTTAGTACGA 59.320 50.000 3.58 3.58 38.10 3.43
3119 3205 2.538333 CGGTCGTGGATCACTTAGTACG 60.538 54.545 0.00 0.00 31.34 3.67
3120 3206 2.421424 ACGGTCGTGGATCACTTAGTAC 59.579 50.000 0.00 0.00 31.34 2.73
3121 3207 2.421073 CACGGTCGTGGATCACTTAGTA 59.579 50.000 14.88 0.00 42.00 1.82
3122 3208 1.201647 CACGGTCGTGGATCACTTAGT 59.798 52.381 14.88 0.00 42.00 2.24
3123 3209 1.909376 CACGGTCGTGGATCACTTAG 58.091 55.000 14.88 0.00 42.00 2.18
3125 3211 4.988065 CACGGTCGTGGATCACTT 57.012 55.556 14.88 0.00 42.00 3.16
3134 3220 1.959226 GGTGCAATCACACGGTCGT 60.959 57.895 0.00 0.00 44.87 4.34
3135 3221 1.502990 TTGGTGCAATCACACGGTCG 61.503 55.000 0.00 0.00 44.87 4.79
3136 3222 0.238289 CTTGGTGCAATCACACGGTC 59.762 55.000 0.00 0.00 44.87 4.79
3137 3223 1.172180 CCTTGGTGCAATCACACGGT 61.172 55.000 0.00 0.00 44.87 4.83
3138 3224 0.888736 TCCTTGGTGCAATCACACGG 60.889 55.000 0.00 0.00 44.87 4.94
3139 3225 0.238289 GTCCTTGGTGCAATCACACG 59.762 55.000 0.00 0.00 44.87 4.49
3140 3226 0.598065 GGTCCTTGGTGCAATCACAC 59.402 55.000 0.00 0.00 44.87 3.82
3141 3227 0.184692 TGGTCCTTGGTGCAATCACA 59.815 50.000 0.00 0.00 44.87 3.58
3142 3228 0.598065 GTGGTCCTTGGTGCAATCAC 59.402 55.000 0.00 0.00 42.40 3.06
3143 3229 0.478072 AGTGGTCCTTGGTGCAATCA 59.522 50.000 0.00 0.00 0.00 2.57
3144 3230 2.489938 TAGTGGTCCTTGGTGCAATC 57.510 50.000 0.00 0.00 0.00 2.67
3145 3231 2.041620 ACATAGTGGTCCTTGGTGCAAT 59.958 45.455 0.00 0.00 0.00 3.56
3146 3232 1.423541 ACATAGTGGTCCTTGGTGCAA 59.576 47.619 0.00 0.00 0.00 4.08
3147 3233 1.064003 ACATAGTGGTCCTTGGTGCA 58.936 50.000 0.00 0.00 0.00 4.57
3148 3234 3.560636 ATACATAGTGGTCCTTGGTGC 57.439 47.619 0.00 0.00 0.00 5.01
3149 3235 6.884832 TCTTAATACATAGTGGTCCTTGGTG 58.115 40.000 0.00 0.00 0.00 4.17
3150 3236 7.504926 TTCTTAATACATAGTGGTCCTTGGT 57.495 36.000 0.00 0.00 0.00 3.67
3169 3255 9.996554 TGACACTTGAGAGACAAAATATTCTTA 57.003 29.630 0.00 0.00 38.08 2.10
3170 3256 8.908786 TGACACTTGAGAGACAAAATATTCTT 57.091 30.769 0.00 0.00 38.08 2.52
3171 3257 8.908786 TTGACACTTGAGAGACAAAATATTCT 57.091 30.769 0.00 0.00 38.08 2.40
3176 3262 9.288576 TCATATTTGACACTTGAGAGACAAAAT 57.711 29.630 9.16 0.00 38.08 1.82
3177 3263 8.675705 TCATATTTGACACTTGAGAGACAAAA 57.324 30.769 9.16 2.60 38.08 2.44
3178 3264 8.675705 TTCATATTTGACACTTGAGAGACAAA 57.324 30.769 8.00 8.00 38.08 2.83
3179 3265 8.675705 TTTCATATTTGACACTTGAGAGACAA 57.324 30.769 0.00 0.00 36.97 3.18
3180 3266 8.853077 ATTTCATATTTGACACTTGAGAGACA 57.147 30.769 0.00 0.00 0.00 3.41
3199 3285 8.674607 GGGTCAAGATAACGAGTTTTATTTCAT 58.325 33.333 0.00 0.00 0.00 2.57
3200 3286 7.662258 TGGGTCAAGATAACGAGTTTTATTTCA 59.338 33.333 0.00 0.00 0.00 2.69
3201 3287 8.036273 TGGGTCAAGATAACGAGTTTTATTTC 57.964 34.615 0.00 0.00 0.00 2.17
3202 3288 7.881232 TCTGGGTCAAGATAACGAGTTTTATTT 59.119 33.333 0.00 0.00 0.00 1.40
3203 3289 7.391620 TCTGGGTCAAGATAACGAGTTTTATT 58.608 34.615 0.00 0.00 0.00 1.40
3204 3290 6.942976 TCTGGGTCAAGATAACGAGTTTTAT 58.057 36.000 0.00 0.00 0.00 1.40
3205 3291 6.349243 TCTGGGTCAAGATAACGAGTTTTA 57.651 37.500 0.00 0.00 0.00 1.52
3206 3292 5.223449 TCTGGGTCAAGATAACGAGTTTT 57.777 39.130 0.00 0.00 0.00 2.43
3207 3293 4.884668 TCTGGGTCAAGATAACGAGTTT 57.115 40.909 0.00 0.00 0.00 2.66
3208 3294 5.069251 CCTATCTGGGTCAAGATAACGAGTT 59.931 44.000 0.00 0.00 38.40 3.01
3209 3295 4.585162 CCTATCTGGGTCAAGATAACGAGT 59.415 45.833 0.00 0.00 38.40 4.18
3210 3296 4.585162 ACCTATCTGGGTCAAGATAACGAG 59.415 45.833 0.00 0.00 38.40 4.18
3211 3297 4.543689 ACCTATCTGGGTCAAGATAACGA 58.456 43.478 0.00 0.00 38.40 3.85
3212 3298 4.939052 ACCTATCTGGGTCAAGATAACG 57.061 45.455 0.00 0.00 38.40 3.18
3222 3308 2.435693 GCTGCGGACCTATCTGGGT 61.436 63.158 0.00 0.00 43.07 4.51
3223 3309 2.423446 GCTGCGGACCTATCTGGG 59.577 66.667 0.00 0.00 41.11 4.45
3228 3314 4.530857 GCCACGCTGCGGACCTAT 62.531 66.667 26.95 0.06 0.00 2.57
3276 3362 0.392706 TGGAGAAAAGCACGCAGAGA 59.607 50.000 0.00 0.00 0.00 3.10
3277 3363 1.129998 CATGGAGAAAAGCACGCAGAG 59.870 52.381 0.00 0.00 0.00 3.35
3278 3364 1.159285 CATGGAGAAAAGCACGCAGA 58.841 50.000 0.00 0.00 0.00 4.26
3281 3367 1.244019 ACCCATGGAGAAAAGCACGC 61.244 55.000 15.22 0.00 0.00 5.34
3340 3426 5.083389 CGGCAATTTCGTCGAAAATTCTAA 58.917 37.500 23.11 0.00 36.86 2.10
3348 3434 2.472491 CGCGGCAATTTCGTCGAA 59.528 55.556 2.90 2.90 35.58 3.71
3398 3484 1.452108 GTGAGCCCATTCCCCTTCG 60.452 63.158 0.00 0.00 0.00 3.79
3401 3487 3.411517 CGGTGAGCCCATTCCCCT 61.412 66.667 0.00 0.00 0.00 4.79
3416 3502 3.781079 TGATTTTCCAAAGCATAGCGG 57.219 42.857 0.00 0.00 0.00 5.52
3419 3505 6.376581 AGAGGACTTGATTTTCCAAAGCATAG 59.623 38.462 0.00 0.00 33.92 2.23
3425 3511 7.037297 AGGATAGAGAGGACTTGATTTTCCAAA 60.037 37.037 0.00 0.00 33.92 3.28
3434 3520 2.302260 CGCAGGATAGAGAGGACTTGA 58.698 52.381 0.00 0.00 0.00 3.02
3444 3530 2.724377 CTCAGCGCGCAGGATAGA 59.276 61.111 35.10 18.34 0.00 1.98
3446 3532 2.355445 CTTCCTCAGCGCGCAGGATA 62.355 60.000 32.93 23.42 38.66 2.59
3455 3541 1.576356 GCCAATACTCTTCCTCAGCG 58.424 55.000 0.00 0.00 0.00 5.18
3488 3574 7.611213 ATCTCTTTTAGTCACCCATTTAACG 57.389 36.000 0.00 0.00 0.00 3.18
3507 3593 7.982354 GTGAAAGTAGCTGGTATTTGTATCTCT 59.018 37.037 0.00 0.00 0.00 3.10
3512 3598 4.628333 GCGTGAAAGTAGCTGGTATTTGTA 59.372 41.667 0.00 0.00 0.00 2.41
3513 3599 3.435671 GCGTGAAAGTAGCTGGTATTTGT 59.564 43.478 0.00 0.00 0.00 2.83
3536 3622 1.292992 GTTTCCGGCCGTTGGTATAG 58.707 55.000 26.12 5.84 0.00 1.31
3563 3649 5.368145 TCGGATTGGAGATACAAAATGGAG 58.632 41.667 0.00 0.00 33.48 3.86
3588 3674 0.406750 TGGGTCAGTAAGAGTCCGGA 59.593 55.000 0.00 0.00 0.00 5.14
3593 3679 1.717077 TCCTCCTGGGTCAGTAAGAGT 59.283 52.381 0.00 0.00 36.25 3.24
3602 3688 4.262617 GTTTGACTATTTCCTCCTGGGTC 58.737 47.826 0.00 0.00 36.25 4.46
3623 3709 5.335661 GCCCAAGAGAAATTCGTAAATGTGT 60.336 40.000 0.00 0.00 0.00 3.72
3635 3721 2.259917 CCCAAAAGGCCCAAGAGAAAT 58.740 47.619 0.00 0.00 0.00 2.17
3639 3725 0.900182 GTCCCCAAAAGGCCCAAGAG 60.900 60.000 0.00 0.00 0.00 2.85
3642 3728 2.203567 CGTCCCCAAAAGGCCCAA 60.204 61.111 0.00 0.00 0.00 4.12
3683 3769 0.837272 GATCCCACAAATCCTCCCGA 59.163 55.000 0.00 0.00 0.00 5.14
3713 3799 2.317040 TCGTTTTCCTCCTCTGACACT 58.683 47.619 0.00 0.00 0.00 3.55
3720 3806 0.325272 AGCCCTTCGTTTTCCTCCTC 59.675 55.000 0.00 0.00 0.00 3.71
3744 3830 5.047021 CGATCTCCTCTGGCATAAAGGATAA 60.047 44.000 12.23 6.27 38.49 1.75
3746 3832 3.260380 CGATCTCCTCTGGCATAAAGGAT 59.740 47.826 12.23 3.70 38.49 3.24
3749 3835 3.068732 TGTCGATCTCCTCTGGCATAAAG 59.931 47.826 0.00 0.00 0.00 1.85
3752 3838 2.362397 GTTGTCGATCTCCTCTGGCATA 59.638 50.000 0.00 0.00 0.00 3.14
3753 3839 1.137872 GTTGTCGATCTCCTCTGGCAT 59.862 52.381 0.00 0.00 0.00 4.40
3758 3844 1.668101 GGGCGTTGTCGATCTCCTCT 61.668 60.000 0.00 0.00 39.71 3.69
3777 3863 5.049198 CCATGTCCGTTTTCATATCATCCAG 60.049 44.000 0.00 0.00 0.00 3.86
3782 3868 3.376859 GTGCCATGTCCGTTTTCATATCA 59.623 43.478 0.00 0.00 0.00 2.15
3816 3902 2.292785 AAAAACTCCACCGGCCACCT 62.293 55.000 0.00 0.00 0.00 4.00
3851 3937 4.814771 GCGTAGAATAGGTGTTTAAGGCAT 59.185 41.667 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.