>input_sequence_41891
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----------ATGTCTGCAGAGATGGGGCGTGCCATGCGGTGGCTCAAGAGGCTGCTCACAGGCAGGAAGGAGGCGCACG
GTGGCGGCAAGGAGATCCATGCCGCGACCGACTGGCATGACGCGGCGGCGGTGAAGGAGTCCACCAAGAGATGGAGCTTC
GTGAAGCAGAGGAAGAGCGGGGTTGACGCCGGGAAGCGGCCCTCAGAGCCTCTCGCCCCCGCGCGGGAGGTGAAGCCATG
CCGCTGTGCCGGCGGCGAGCTGGTGGGAGCACGCGAGGAGAAGGCGGCCGTCGTGATTCAGAAAGCCTTCAGAGGCTACC
TGGTATGTTCTTGATCATCATCCCGTTGATTCATATCTGATATCTCCATCGTACGTCATCCCTGTATAAGTTGGTTGAGA
TACTGCTGACCGCGTGCGTGTCTGAGTTTCGGCTATGTTCATCATTTCTTGTTATCCGGCGTGCCGAAATGGATTGAACA
GTCCCAGTGTGCGCCCGAACTCTGACGTTAACGATGCAGATCCTCCCATCAATTATTTTAGTGGATAGGTTCACACTGTT
CGCACACTGTTTATTCCAGACCCGTCAGCTCGTTTTGTATTATCTGTTTGGATTAGTGGGCTAAACGTCGCTGTATGTGA
TGTCACTGCTCGTCATGTTCCTTTCCATGATGGACAGTTGGTAG---TTGTTAACTCTTCCTCTGTCCCTGCGCAAAACC
TGCACGTTGATCTTGATCGGCTGCGCAGTTCTTTACTCTGCTTCGGGCC-TTCAGCAGCGACTTCTCTGTATAATAAGCT
C----TGTGTTGGTTCGGTGTCAGTGTAGTGGTTACTGATTACGCAG-TGTGACATGAGCCTCTTTGGCCAAGCTGAGTT
CTTTAGTCCTTGGCCCAAAGCAAGTTGTTTTGGTTTGAGTTTTGAATCTTCTCTGACAATAATGCATGGCTTCAGGCTAG
GAAGGCGCTTCGCGCTCTCAGATCACTCGTCAAGCTGCAAGCTCTGGTCCGAGGCTATCTCGTGAGGAAGCAGGCGGCCA
CGACGCTGCACCGGCTGCAGGCGCTCATGCGGCTGCAGGCCGATTCCCGCGCTTTCAAGAGTGCCTCCTACCGGAAATCC
ATGGAACAGGTCA-GCCC-------------------CGAATTTGAACTCTTCGTTCGTGTTGATCAACGATCACGACGC
GTCGACGTGATTTCAAGAGTTTGATATGTTCGCTGCTGTGCATTTTCCGCAATGCAGGAGAGAATTGTCGCGCAAGATGC
CCGGATGAGGACGCCGCCGGCCAAGCCGGGGCACCGGCGGAGGCTGTCCGACAGCACGGACTCCAACTACGAGCGCAGCC
CGCGGATCGTGGAGATGGACACGTGCCACCTCCGCTCCCGGTCCAGCCGGATCGCG---AGCGGCCGGTACGCCGCCGAT
CGCTCGTCGGGCCGGCTCGCCCCGGACCTGGCCCCGCCGTTCTCGCCGCGGTCCGTCAAGCAGCCCCCGCGGCTGTCCAC
CCGGCGTGAGCCCGTAAGGCTCGCCAAGACGGCGCAGAACACGCCCCGCTTCAGCGGGGCCGACCCGCCGTACACGTACG
ACTCGCCTGCCAAGAGCGTGGACGGGCTGGCGGCGCGGCCGCTCTGGCACCGGGACCTCCTCGCGAGCCCCCGGTACATG
GCGGGCACGGCCTCGTCGGCGGCGAGGCTGCGGTGCCAGAGTGTGCCCAGGCAGCCGGCGGAGGCGCCGAGGGCGAGCCT
GACCCAGCGGGATGTCCCTGCTGGGGCGAGGAAGTCGACGTGCACGCGGACGCAGCATGGCGGCCTCTGCTTCCACTCCT
CGGATGCCACCCACACGCGCCGCTCCGACCTCAGCGACGACGCGGCAAGAGATTATTACTTGGACAGGATGTGGTGA---
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>chr3D_1_TraesCS3D01G275900
GCATCGGCGCGAACGATCCCCACCGTTTCATGTAGTACGTAACTAC----GTCCATGCTGCATGAGTGGCATGGTCCCGA
ATCCCGACCGATCCGTTTTGGAGGCGGTCGCGAGTGAATGATTGTGCATTGCCGTGTACTGCCAGGTTGCCTGATCAACG
GCGGCTTTGTTGTTGT----TCTACTCGAT----------CGGCGCATGTCGGTACTGCT--------------------
-ACGTACGTACATATGTGGACTTGAGTTGGTCCTTTGGCCTGCGCATTTGTTGGCTTGCGCGCGCGCGCTCGGCGGTGGC
GCTACCAGTCTGCTTGGTGATCTGGTGGTGCCGAGACCCAC-----GCGTCAGTTGGGCTCGCTCTCCCACCTATCCCTC
TCCCTCTC------CCTCCCCGCCCGCTAGACTAGTAGAAGTAGCAGTAGGAGTAATCCGCTCGCCGCCGCTGCGGTTAT
CCGTTCGAGGTTGATGCGCTGCAAAGTTTCCTCTTCCGGGCTGGCTGGCTGGCTGGCTGGACTGGAGTGACTCACGTAAA
CTTCGCCGCTCCGCTCCGGCCACCGGCCTTTCCATCTTTTGCCGCTGCTCCCTTACCTGCCCCGCAACCGCAGGTTGATT
TCCTCCTTTAATCCCGTGCCTTTCCTCTCAAAGCAAAGAGTGGACTTGGAGTTTTTCCTCCGGCCCCGTTCATTTCTCCT
GGATTTCGCGTACAAATCGCCCTTCCCTTTTCCATTCTAATTAATACTCCACGAGCCGTGATGTCGCGTACGGAGTCGAC
AAGCTGTATATAAGCCCTCGCCGTGTTTCTTCCTTCCTTCCTTCCTCTAGGTTTCTCCTTCCATAGCTTCCTGTCCCCAA
AAGCTCCTTTTCTCCCAACTCAACTCAAGTCGGAGGAGCCTCTGCGCCAGTGCGCCGCGCCCTCGGGCATACTGGGCTAA
GTACTGCCCTCTCCTTCTGAGATTCTTCATCTTACTCACGTTTGGTTCCGTTAACGACTTGATGCTCTAGCTTCTTCCTT
GCGCTCGTTCATGTCTGCAGAGATGGGGCGTGCCATGCGGTGGCTCAAGAGGCTGCTCACAGGCAGGAAGGAGGCGCACG
GTGGCGGCAAGGAGATCCATGCCGCGACCGACTGGCATGACGCGGCGGCGGTGAAGGAGTCCACCAAGAGATGGAGCTTC
GTGAAGCAGAGGAAGAGCGGGGTTGACGCCGGGAAGCGGCCCTCAGAGCCTCTCGCCCCCGCGCGGGAGGTGAAGCCATG
CCGCTGTGCCGGCGGCGAGCTGGTGGGAGCACGCGAGGAGAAGGCGGCCGTCGTGATTCAGAAAGCCTTCAGAGGCTACC
TGGTATGTTCTTGATCATCATCCCGTTGATTCATATCTGATATCTCCATCGTACGTCATCCCTGTATAAGTTGGTTGAGA
TACTGCTGACCGCGTGCGTGTCTGAGTTTCGGCTATGTTCATCATTTCTTGTTATCCGGCGTGCCGAAATGGATTGAACA
GTCCCAGTGTGCGCCCGAACTCTGACGTTAACGATGCAGATCCTCCCATCAATTATTTTAGTGGATAGGTTCACACTGTT
CGCACACTGTTTATTCCAGACCCGTCAGCTCGTTTTGTATTATCTGTTTGGATTAGTGGGCTAAACGTCGCTGTATGTGA
TGTCACTGCTCGTCATGTTCCTTTCCATGATGGACAGTTGGTAG---TTGTTAACTCTTCCTCTGTCCCTGCGCAAAACC
TGCACGTTGATCTTGATCGGCTGCGCAGTTCTTTACTCTGCTTCGGGCC-TTCAGCAGCGACTTCTCTGTATAATAAGCT
C----TGTGTTGGTTCGGTGTCAGTGTAGTGGTTACTGATTACGCAG-TGTGACATGAGCCTCTTTGGCCAAGCTGAGTT
CTTTAGTCCTTGGCCCAAAGCAAGTTGTTTTGGTTTGAGTTTTGAATCTTCTCTGACAATAATGCATGGCTTCAGGCTAG
GAAGGCGCTTCGCGCTCTCAGATCACTCGTCAAGCTGCAAGCTCTGGTCCGAGGCTATCTCGTGAGGAAGCAGGCGGCCA
CGACGCTGCACCGGCTGCAGGCGCTCATGCGGCTGCAGGCCGATTCCCGCGCTTTCAAGAGTGCCTCCTACCGGAAATCC
ATGGAACAGGTCA-GCCC-------------------CGAATTTGAACTCTTCGTTCGTGTTGATCAACGATCACGACGC
GTCGACGTGATTTCAAGAGTTTGATATGTTCGCTGCTGTGCATTTTCCGCAATGCAGGAGAGAATTGTCGCGCAAGATGC
CCGGATGAGGACGCCGCCGGCCAAGCCGGGGCACCGGCGGAGGCTGTCCGACAGCACGGACTCCAACTACGAGCGCAGCC
CGCGGATCGTGGAGATGGACACGTGCCACCTCCGCTCCCGGTCCAGCCGGATCGCG---AGCGGCCGGTACGCCGCCGAT
CGCTCGTCGGGCCGGCTCGCCCCGGACCTGGCCCCGCCGTTCTCGCCGCGGTCCGTCAAGCAGCCCCCGCGGCTGTCCAC
CCGGCGTGAGCCCGTAAGGCTCGCCAAGACGGCGCAGAACACGCCCCGCTTCAGCGGGGCCGACCCGCCGTACACGTACG
ACTCGCCTGCCAAGAGCGTGGACGGGCTGGCGGCGCGGCCGCTCTGGCACCGGGACCTCCTCGCGAGCCCCCGGTACATG
GCGGGCACGGCCTCGTCGGCGGCGAGGCTGCGGTGCCAGAGTGTGCCCAGGCAGCCGGCGGAGGCGCCGAGGGCGAGCCT
GACCCAGCGGGATGTCCCTGCTGGGGCGAGGAAGTCGACGTGCACGCGGACGCAGCATGGCGGCCTCTGCTTCCACTCCT
CGGATGCCACCCACACGCGCCGCTCCGACCTCAGCGACGACGCGGCAAGAGATTATTACTTGGACAGGATGTGGTGATCG
TCTCATCTATCAGATGGAGACGGACGGACGGTGGTGTATGATAC---CAGTAGCTGCAAATCGCTGGATAGTCTCCGAAT
TCTGTACATGCTTTATGCTTAGAGGCTTTTTTTTGCGGGTTTTCTTTCTTGACATCTAGTAGTTGCTAAAGTGTTAAGAT
CAAAACGTTGATGATCGATAGGGGGTTTGTTCAACGGAAATTTGTAGAGATCAAAATGTAGCCGGTTGCTTGGTAAATTA
TAGTCGTACTAAGTGATCCACGACCGTGTGATTGCACCAAGGACCACTATGTATTAAGAATATTTTGTCTCTCAAGTGTC
AAATATGAAATAAAACTCGTTATCTTGACCCAGATAGGTCCGCAGCGTGGCCCGGCAGAGTGCTGGACAGCCGCGGCTGG
CTCTCTGCGTGCTTTTCTCCATGGGTGGGGGGCTAACCATGGCAGTGAATCCAAGAGGGAACGGGTTAGAATTTTCGACG
AAATTGCCGCGCTAGATATCCAGGCAGATTGCCGCCCTTTCTCCGAAGGGGAATGGGCTCACCGCTATGCTTTGGAAAAT
CAAGTCCTCTCTATCCTGCGCGCTGAGGAAGAGTATTGGCGACGTAGAGGCGGCGTTAAATGGGTGACTAAAAGAGATAC
AAATACCAGCTACTTTCACGCCTATACCAACGGCCGGAAACGGAAGTGCTCCATTTTGTATCTCCAATCCGATTCCGGAC
TCTTACTGACCCAGGAGGAAATAGTCAAACACATTTACGAATTTCTCTTGGGCCTTTTGGGGACGGCCGAAGAAAAGGCT
CTTAGCCTTCGGGAGGATTTGTGGGATCCCTCGGAGCGAGTGTCAGAGGAGGAAAACGAAGGGCTCGTTTTATCCTTTAT
GCCAGAGGAGATCGACAACGCCCTGGATGATATGAAAACGGACATGGCACCAGGCCCGGACAGGTGGCCGGTGGAGTTTT
TCAAGAAATTCTGGCCATGCCTTAAACACCTATTCTACGC
>chr3B_1
GCATCGGCGTGATCGATCCCCACCGTTTCAT---GTACGTACCTAC----GTCCATGCTGCATGAGTGGCATGGTCCCGA
ATCCCGACCGATCCGTTTTGGAGGCGGTCGCGAGTGAATGATTGTGCATTGCCGTGTACTGCCAGGTTGCCTGATCAACG
GCGGCTTTGTTGTTGT----TCTACTCGATCGTGCAGCAGCGGCGCATGTCGGTACTGCT--------------------
-ACGTAC----ATATGTGGACTTGAGTTGGTCTTTTGGCCTGCGCATTTGTTGGCTTGCGCGCGCGCGCTCGGCGGTGGC
GCTACCAGTCTGCTTCCTGATCTGGTGGTGCCGAGACCCACGCCACGCGTCAGTTGGGCTCGCTCTCCCACCTATCCCTC
TCCCTCTCCCTCCCCCTCCCCGCCCGCTAGACTAGTAC---------TAGGAGTAATCCGCTCGCCGCCGCTGCGGTTAT
CCGTTCGAGGTTGATGCGCTGCAAAGTTTCCTCTTCCGGGCTGGCTG----GCTGGCTGGACTGGAGTGACTCACGTAAA
CTTCGCCGCTCCGCTCCGGCCACCGGCCTTTCCATCTTTTGCCGCTGCTCCCTTACCTGCCCCGCAACCGCATGTTGATT
TCCTCCTTTAATCTCGTGCCTTTCCTCTCAAAGCAAAGAGTGGACTTGGAGTTTTTCCTTCGGCCCCGTTCATTTCTCCT
GGATTTCGCGTACAAATCGCCCTTCCCTTTTCCATTCTAATTAATACTCCGCGAGCCGTGATGTCGCGTACGGAGTCGAC
AAGCTGTATATAAGCCCTCGCTGTGTTTCT----TCCTT----CCTCTAGGTTTCTCCTTCCATAGCTTCATGTCCCCAA
AAGCTCCTTTTCTCTCAACTCCACTCAAGTCGGAGGAGCCTCTGCGCCAGTGCGCCGCGCCCTCGGGCATACTGGGCTAA
GTACTGCCCTCTCCATTTGAGATTCTTCATCTTACCGAGGTTTGCGTTGACGCG------------CTAGCTTCTTCCTC
GCGTTCGTTCGTGTCCGCAGAGATGGGCCGTGCCATGCGGTGGCTCAAGAGGCTGCTCACAGGCAGGAAGGAGGCGCACG
GTGGCGGCAAGGAGATCCATGCCGCGACCGACTGGCATGACGCGGCGGCGGTGAAGGAGTCCACCAAGAGATGGAGCTTC
GTGAAGCAGAGGAAGAGCGGAGTTGACGCTGGGAAGCGGCCCTCAGAGCCTCTCGCCGCCGCGCTGGAGGTGAAGCCATG
CCGCTGTGCTGGCGGCGAGCAGGTGGGGGCACGCGAGGAGAAGGCGGCCGTCGTGATTCAGAAAGCCTTCAGAGGCTACC
TGGTATGTTCTTGATCAGCGTCCCATTGATTC-------ATATCTCCATCGTACGTCATCTCTGTATAAGTTGGTTGAGA
TACTGCTGATCGCGTGCGTGTCTGAGTTTCGGCTATGTTCATCATTTCTTGTTATTCGGCGCGCTGAAATGGCTTGAACA
GTCCCGGTGTGCGCCCGAATTCTGACGTTAACGATGCAGATCCTCCCATCAATTATTTTAGTGGATAGGTTCACACTGTC
CGCACACTGTTTATTCCAGACCCGTCAGCTCGTTTTGTATTATCTGTTTGGACTAGTGGGCTAAACGTCGCTGTATGTGA
TGTCACTGCTGGTCATGTTCCTTTCCATTACGGACAGTTGTTAG---TTGTTAACTCTTCCTCTGTTCCTGTGCAAAGTC
GGCACGTTGATCTTGATCGGCTGCGCAGTTCTTTACTCTGCTTCGGGCCCTTCAGCAGCGACTTCTCTGTATAATAAGCC
C----TATGTTGGTTCGTTGTCAGTGTAGTGGTTACTGATTACGCAG-TGTGACATGAGCCTATTTGGCTAAGCTGAGTT
GTTTAGTCCTTGGCCCAATGCAAGTTGTTTTGGTTTAAGTTTTGAATCTTCTGTGACAATAATGCATGGCTTCAGGCTAG
GAAGGCGCTTCGCGCCCTCAGATCACTCGTCAAGCTGCAGGCTCTGGTCCGAGGCTACCTCGTGAGGAAGCAGGCGGCCA
CGACGCTGCACCGGCTGCAGGCGCTCATGCGGCTGCAGGCCGATTCCCGCGCCTTCAAGAGTGCCTCCTACCGGAAATCC
ATGGAACAGGTCAGGCATTTTCACTTACACCATGCCTCGAACTTGAACTCGTCGTTCGTGTTGACCAACGATCACGTGTC
GACCGATAAATTTT--GAGTTTGATATGCTCGCTGCGGTGCATTTTTCGCAATGCAGGAGAGAATTGTCGCGCAAGATGC
CCGGATGAGGACGCCGCCGACCAAGCCCGGGCACCGGCGGAGGCTGTCCGACAGCACGGACTCCAACTACGAGCGCAGCC
CGCGGATCGTGGAGATGGACACGTGCCACCTCCGCTCCCGGTCCAGCCGGATGGTGAGCAGCGGCCGGTACGCCACCGAT
CGCTCGTCGGGTCGCCTGGCCCCGGACCTGGCCCCGCTGTTCTCGCCGCGGTCCGTCAAGCAGCCCCCGAGGCTGTCCAT
CCGGCGTGAGCCCGTCAGGCACGCCAAGACGGCGCAGAATACGCCCCGCTTCAGCGGGGCCGACCCGCCGTACACATACG
ACTCGCCTGCCAAGAGCGTGGACGGGCTGGCGGCGCGGCCGCTCTGGCACCGGGACCTGCTCTCGAGCCCGCGGTACATG
GCGGGCACGGCCTCGTCGGCGGCGAGGCTGCGGTGCCAGAGCGCGCCCAGGCAGCCGGCCGAGGCGCCGAGGGCGAGCCT
GACCCAGCGAGATGTCCCTGCTGGGCCGAGGAAGTCGACGTGCACGCGGACGCAGCATGGCGGCCTCTGCTTCCACTCCT
CGGATGCCGCCCACACGCGCCGCTCCGACCTCAGCAACGACGCGGCAAGAGATTATTACTTGGACAGGATGTGGTGATCG
ATCGGACGGA----------------GACGGTGGTGTATGATACTACCAGTAGCTGCAAATTGCTGGATAGTCTCCGAGT
TTTGTACATGC---------------------------------------------------------------------
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>chr3A_28
TCATGTAC--------------------------GTACGTACGTACGTGAGTCCATGCTGCATGAGTGGCATGGTCCCGA
GCCCCGACCGATCCGTTTTGGAGGCGGTCGCGAGTGAATGATTGTGCATTGCCGTGTACTGCCAGGTTGCCTGATCAACG
GCGGCTTGTTGTTGTTTCTATCTACTCGATCGTGCAGCAGCGGCGCATGTCGGTACTGCTAGCTCTCGTACGTACGTACG
TACGTAC----ATATGTGGACTTGAGTTGGTCTTTTGGCCGGCGCATTTGTTGGCTTGCGCGCGCGCGCTCGGCGGTGGC
GCTACCAGTCTCCTTCGCGATCCGGTGGTGCCGAGACCCAC-----GCGTCAGTTGTGCTCGCTCTCCCACCTATATCCC
TCCCG---CCTCTCCCTCCCCGCCCGCTGGAGTAGAAGT------AGTAGGAGTAATCCGCTCGCCGCCGCTGCGGTTAT
CCGTTCGAGGTTGATGCGCTGCAAAGTTTCCTCTTCCGGGCTGGCTG----GCTGGCTGGGCTGGAGTGACTCACGTAAA
CTTCGCCGCTCCGCTCCGGCCACCGGCCTTTCCATCTTTTGCCGCTGCTCCCTTACCTGCCCCGCAACCGCGGGTTGATT
GCCTGCTTTAATCTCGTGCCTTTCCTCTCTCTCATTTTCCAG-----------------TCGGCCCCGTTCATTTCTCCT
GGATTTCGCGTACAAATCGCCCTTCCCTTTTCCATTCCAATTAATACTGCACGAGCCGTGATGTCGCGTACGGAGTCGAC
AAGCTGTATATAAGCCATCGCTGTGTTTCTTCCGTCCTT----CCTCTAGGTTTCTCCTCCCATAGCTTCCTGTCCCCAA
AAGCTCCTTTTCTCTCGACTCAACTCAACTCGGAGGAGCCTCTGCGCCAGTGCGCCGCGCCCTCGGGCATAGTGGGCTAA
GTAGTGCCTTCTCCTTCTGAGATTCTTCATCTTACTGACGCTTCGTTGCGCTGA--------------------------
-CGCTTGTTCGTGTCCGCAGAGATGGGGCGTGCCATGCGGTGGCTCAAGAGGCTGCTCACGGGCAGGAAGGAGGCGCACG
GAGGCGGCAAGGAGATCCATGCCGCGACCGACTGGCATGACG---CGGCGGTGAAGGAGTCCACCAAGAGATGGAGCTTC
GTGAAGCAGAGGAAGAGCGGGGTTGACGCCGGGAAGCGGCCCTCAGAGCCTCTCGCCGCCGCGCTGGAGGTGAAGCCATG
CCGCTGTGCCGGCGGCGAGCAGGCGGGAGCACGCGAGGAGAAGGCGGCCGTCGTGATTCAGAAAGCCTTCAGAGGCTACC
TGGTATGCTCTTGATCATCATCCCGTTGATTC-------ATATCTCCATCGTACGTCATCTCTGTATAAGTTGGTTGGGA
TACTGCTGACCGCGTGCGTGTCCGAGCTTCGGTTATGTTCATCATTTCTTGCTATCCGGTGTGCTGAAATGGCTTGAACA
GTCCCGGTGTGCGCCCGAATTCTGACGTTAACGATGCAGATCCTCCCACCAATTATTTTAGTGGATAGGTTCA-------
----CACTGTTTATGCCAGACCCGTCAGTTATTTTTGTATTATCTGTTTGGATTAGCGGGCTAAACGTCGCTGTATGTGA
TGTCACCGCTGGTCATGTTCCTTTCCATGATGGACAGTTGGTAGTAGTTGTTAACTCTTCCTCTGTCCCTGTGCAAAGTC
GGCACGTTGATCTTGATCGGCTGCGCAGTTCTTTACTCTGCTTCGGG-CCTTCAGCAGCGACTTCTCTGGATAAATAAGC
TCTATTATGTTGGTTCGGTGTCAGTGTAGTGGTTACTGATTACGCAGTTGTGACATGATCCTATTTGGCCAAGCTGAGTT
CTTTAGTCCTTGGCCCGATGCAAGTTGTTTTGGTTTAAGTTTTGAATCTTCGGTGACAATAATGCATGGCTTCAGGCTAG
GAAGGCGCTCCGCGCTCTCAGATCACTCGTCAAGCTGCAAGCTCTGGTCCGAGGCTACCTCGTGAGGAAGCAGGCGGCTA
CGACTCTGCACAGGTTGCAGGCGCTCATGCGGCTGCAGGCCGATTCCCGCGCATTCAAGAGCGCCTCCTACCGGAAATCC
ATGGAGCAGGTCAGGCCC-------------------CGAATTTGAACTCATCGTTCGTGTTGATCAACGATCACGAGTT
CACGGATGTATATT--GAGTTTGATGTGCTTTCTGCGGCGTGTTTTTCGCAATGTAGGAGAGGATCGTTGCGCAAGATGC
TCGGATGAGGACGCCGCCGGCCAAGCCGGGGCACCGCCGGAGGCTGTCCGACAGCACAGACTCCAACTACGAGCGCAGCC
CGCGGATTGTGGAGATGGACACGTGCCACCTCCGCTCCCGGTCCAGCCGGATGGTGAGCAGCGGCCGGTACGCCACCGAT
CGCTCGTCCGGCCGCCTCGCCCCGGACGTGGCCCTGCCGTTCTCGCCGCGGTCTGTGAAGCAGCCCCCGCGGCTGTGCAC
CCGGCGTGAGCCCGTCAGGCTCGCCAAGACGGCGCAGAACACGCCCCGCTTCGGCGGGCCCGACGCGCCCTACACGTACG
ACTCGCCTGCCAAGAGCGTGGACGGGCTGGCGGCGCGGCCGGCCTGGCACCGGGACCTGCTCGCGAGCCCGCGGTACATG
GCGGGCACGGCCTCGTCGGCGGCGAGGCTGCGGTGCCACAGCGCGCCCAGGCAGCCTGAGGATGCGCCGAGGGCGAGCCT
GACCCAGCGGGATG------CTGGGCCGAGGAAGTCGATGTGCACGCGGACGCAGCATGGCGGCCTCTGCTTCCACAGCT
CGGATGCCACCCACACGCGCCGCTCCGACCTCAGCGACGACGCGGCAAGAGATTATTACTTGGACAGGATGTGGTGATCG
TCTGATCTATGAGATGGAGGCGGACGGACGGTGGTGTAAGATAC---CAGTTGTTGCAAATTGCTGGATAGTCTCCGAAT
TTTGTACATGCTT-------------------------------------------------------------------
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>chr4D_3225
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-----------------------------CCAGCTAGGGCCGCAACGGGGACCGGCAGAGTGCTGGAACACAGCGGCTAG
CAAACTCCGGGCTTTTCTGCGTGGTTGGGGGGCTAACCATGGCAGTGAATCCAAGAGGGAGCGGGCTCAGTTTGTCGAGG
CAATTGCTGCGCTTGACTTCGAGGCCGACCTGCGCCCCTTCTCGGAGGGAGAATGGGCCTTACGTTACGACTTGGAACGC
CAAGTCCTTGCCATCCTCCGGGCTGAAGAGGAATATTGGCGACGCAGGGGCGAGATCAAGTGGGTCACCAAAGGAGACGC
TAATACCGGCTATTTTCATGCTTACACTAACGGTAGGAAACGCAAAAGTACGATCCTTAGATTACAATCCGAACATGGGC
TCTTACTTACCAACGAGCTCATTGTGGCCCACATTTATGAGTTCTTCATCGGTCTGTTGGGAACGGCCGAGGAGAAAGCT
CTTGGCCTCCGGGATCACCTTTGGGACCCTGCCGAACGGGTCTCACAGGAGGAGAACGATGGGCTCGTCCTCTCTTTCCT
TCCGGAGGAAATCGATAGCGCCTTACACGATATGAAAACGGGCACGGCGCCCGGTCCGGATGGGTGGCCGGTGGAATTTT
TCAAAAAATTCTTGCCTATGCTCAAACACCTTTTCTACG-
>chr3D_3226
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------------------------------CAGCTAGGGCCGCAACGCGGACCGGCAGAGTGCTGGACCGCGGCGGCTAG
CAAACTCCGGGCGTTCCTGCGTGGGTGGGGGGCTAACCATGGCAGTGAAACCAAGAGGGAGCGGGCTAGAATTGTTGAGG
CAATAGCCGCGCTGGACTTGGAGGCCGATCAACGCCCCTTCTCGGAGGGAGAATGGGCCTTTCGGTACGACCTCGAACGC
AAAGTCATAGCCATCCTCCGGGCTGAAGAGGAATATTGGCGACGTAGGGGTGGTATCAAGTGGGTCACCAAAGGCGACGC
TAACACCGGATATTTTCATGCTTACGCCAATGGTAGGAAACGTAAAAGTACTATACTTAGGTTACAATCAGATCATGGTC
TCCTTCTTACCAACGATCTCATTGTGGCCCACATATATGAGTTTTTCATCGGCCTTTTGGTGACGGCCGAGGAAAAAGCT
CTCTGCCTCCGCGATGGCCTTTGGGACCCATCCGAAAGGGTCTCATAGGAGGAGAACGATGGGCTCGTTCTCTCGTTCCT
TCCGGAGGAAATCGATAGAGCTGTGCTCGATATGAAATCGGACACGGCGCCTGGGCCGGATGGGTGGCCGGTGGAGTTTT
TCAAAAAATTCTGGCCTAACCTTAAGCACCTTTTCTATGC
>chr4D_3232
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------------------------------------GGTCCGCAGCGTGGCCCGGCAGAGTGCTGGACCGCTGCGGCGAG
CAAGCTCCGTGCTTTCCTTCGTGGGTGGGGGGCCAATCACGGTAGCGAGTCTAAGAGGGAACGGGCTAGGATTGTGGACG
AGATCGCCTCGCTCGATGCCCAGGCAGATTGCCGCCCTTTCTCGAAGGGGGAGTGGGCTCATCAATATGCGCTGGAAAAC
CAAGTCCTTGCAATCCCGCGAGCTGAGGAAGAGTATTGGCGCCGTAGAGGCGGAGTCAAATGGGTGACTAAAGGTGACGC
AAACACTGGATACTTTCACGCTTATGCCAATGGCCGGAAACGGAAGTGTTCCATTTTGTGCCTTCAATCCGATACCGGTC
TCTTGCTAGCCCAGGAGGAAATAGTCAACCACATTTACGAGTTTTTCGTGGGCCTTCTGGGGACGGCCGACGAGAAGACT
CTTAGCCTGCGGGAGGATTTGTGGGATCCAACGGAGCGGGTGTCGCAGGAGGAAAATGAAGGGC----------------
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>chr4D_3235
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---------------------------------------CCGCAACGCGGACCGGCAGAGTGTTGGACCGTGGCGGCTAG
CAAACTCCGCGTGTTCCTGCGTGGGTGGGGGGCTAACCATGGCAGTGAAACCAAGAGGGAGCGGGCTAGAATTGTATAGG
CAATAGCCGCGCTGGACTTGGAGGCCGACCAACGCACCTTCTCGGAGGGAGAATGTGCCTTT-GGTACGACCTTGAACGC
AAAGTCATAGCCATCCTTCGGGCAGAGGAGGAATATTGGCGACGTAGGGGCGGAATCAAATGGGTCACCAAAGGAGACGC
TAACACCGGCTATTTTCATGCTTACGCTAACGGTAGGAAACGTAAAAGTACTATTCTACGGTTACAATCAGATAATGGTC
TCTTTCTAACCAATGAACTCATTGTGGCCCACATCTATGAGTTTTTCATCGGCCTTTTGGGGACGGCCAAGGAAAAAGCC
CTTTGCCTCCGCGAGGACCTTTGGGACCCATCCGAACGGGTCTCACAGGAGGAGAACTAAGGGCTCGTTCTCTTGTTCCT
TCCGGAGGAAATCGATAGAGCTTTGCACGATATGAAAACGGACACGGCGCCTGGGCCGGATGGCTAGCCGGTGGAATTTT
TCAAACAGTTCTGGCCTAATCTTAAGCACCTTTTCTA---
>chr2A_3247
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---------------------------------------------------CCGACAGAGTGCTGGAATGCGGCGGCGGG
CAAGCTCCGGGCATTCCTGCGAGGGTGGGGTGCCAACCATGGTAGTGAATCCAAACAGAAACGCGCTAGGATTGTCGATG
AAATTGCATCGCTGGATGCGGAGGCAGACCGTCGCCCCTTCTCGGAGGGAGAATGGGCTCATAGATATACCCTACAAAAC
CAAGTCATCACAATCTTATGAGCGGAGGAAGAGTATTGGCGACGTAGAGGCGGAGTCAAGTGGGTTACTAAAGGCGACGC
AAACACTAGTTACTTCCACGCTTATGCTAACAGAAGGAAACGAAAGTGTT-----TTGCGCCTTTAATCAGATAGTGGTC
TCCTTTTAACCCAAGAGCAAATTGTTGCCCACATTTACGAGTTTTTCATTGGCCTTTTGGGGACGGCTGAGGAAAAAACT
CTTTGCCTACGGGAGGATTTGTGGGACCCAACGGAGCGGGTGTCGCAGGAGGAGAATGAAGGGCTCGCTCTCTCATTCTT
GCCGGAAGAGATCGACAAAGCCTTGGCCGACATGAAAACAGAAACGGCGCCCGGGCCGGACGGGTGGCCGGTAGAGTTTT
TCAAGAACTTTTGGTCGTGCCTTAAGCACCTTTTCTA---
>SNPs
---------S--S------------------SSS-------S--------------------------------------
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-------SSSS---------------------S-----------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------SSSSSSS-----------------------------------
-----------------------------------------------SSSS-----------------------------
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-------------S---------------------------------------------S--------------------
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---------------------S-----------S-----SSSS-------------------------------------
--------------S-----------------------------------------------------------------
------------------------------------S----------S--S-S-SSSSSSSSSSSS-------------S
----------S----S----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S------S---------------
--------------------S-----------------------------------------------------------
--------------------------------SSSSSSS---------------------S-------------------
----------------------------------------------------------------S-------S-------
-----S-------------S-----------------------------------------------------------S
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----------S------------------------------------------------------------S-----SS-
S------------------------------------------------------------------------------S
------S-------------------------------------------------------S-----------------
------------------S-----------------S---------------S---------------------------
---------------------------------------------------------S----------------------
----------------------------------------------------S---------------------------
--------------------------------------------------S--------------------------SS-
-S--SSSSS----SSS------------S-------S---------S---------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S-S-------------------S-----
--------------S-----------------------------------------------------------------
---------------S----------------------------------------------------------------
----------------------------------------------------------S-----------S---------
-----------------------------------------S-S------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
---S------S--------S-----------------------------------------S------------------
-S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----------------------------------S--S--------
-SSS--S-----------S-S--------------------------------------------S-------S------
-------------S---S-------------------------S--S--------------S--S-----S--------S
---------S-S--------S--------------------------------S--S---------------S----SS-
---------------------S--------------------------S----------SS--S---------S----S-
-------S--------------------S-----------S---S--S----------------------S---------
--------S--------------------S--------S------S-----------------------S-S--S--SS-
---S------------------S----S----------------S---S--S--S------S------------------
----------------S--------------S--------
>forward_439
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CCGCCCGCTAGACTAGTAGA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_2269
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TTCGCTGCTGTGCATTTTCC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>forward_1051
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTCTTCCTT
GCGCTCGTTCA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_2287
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CCGCAATGCAGGAGAGAATTG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>forward_2058
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AAGCTCTGGTCCGAGGCTAT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_3227
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TGTGATTGCACCAAGGACCA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
