Multiple sequence alignment - TraesCS3D01G272600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G272600 chr3D 100.000 2691 0 0 1 2691 378199817 378202507 0.000000e+00 4970.0
1 TraesCS3D01G272600 chr3D 88.852 610 42 11 2009 2595 564086400 564087006 0.000000e+00 726.0
2 TraesCS3D01G272600 chr3D 87.043 602 50 15 2009 2589 536270327 536270921 0.000000e+00 654.0
3 TraesCS3D01G272600 chr3D 90.826 109 4 3 2557 2665 536270946 536271048 1.000000e-29 141.0
4 TraesCS3D01G272600 chr3D 90.090 111 8 2 2557 2667 564087025 564087132 1.000000e-29 141.0
5 TraesCS3D01G272600 chr3D 91.429 105 3 3 2563 2667 86362362 86362264 3.610000e-29 139.0
6 TraesCS3D01G272600 chr3B 92.891 1702 96 18 329 2009 492757315 492759012 0.000000e+00 2449.0
7 TraesCS3D01G272600 chr3A 92.308 975 56 9 976 1944 502278652 502279613 0.000000e+00 1367.0
8 TraesCS3D01G272600 chr3A 92.012 651 38 6 329 971 502272664 502273308 0.000000e+00 902.0
9 TraesCS3D01G272600 chr3A 87.562 603 52 10 2003 2590 44228837 44229431 0.000000e+00 676.0
10 TraesCS3D01G272600 chr3A 87.459 606 49 11 2003 2590 43644699 43645295 0.000000e+00 673.0
11 TraesCS3D01G272600 chr3A 87.129 606 51 11 2003 2590 43033313 43033909 0.000000e+00 662.0
12 TraesCS3D01G272600 chr1A 86.458 672 68 9 2009 2667 321401520 321400859 0.000000e+00 715.0
13 TraesCS3D01G272600 chr7D 88.758 596 48 15 2009 2595 221823393 221822808 0.000000e+00 712.0
14 TraesCS3D01G272600 chr7D 80.822 73 11 3 2051 2120 436839757 436839829 1.000000e-03 54.7
15 TraesCS3D01G272600 chr7B 87.500 608 48 14 2003 2590 720341894 720342493 0.000000e+00 676.0
16 TraesCS3D01G272600 chr4D 87.396 603 54 11 2009 2595 66957970 66957374 0.000000e+00 673.0
17 TraesCS3D01G272600 chr4D 95.238 105 2 2 2563 2667 66957349 66957248 2.140000e-36 163.0
18 TraesCS3D01G272600 chr5D 83.959 586 54 20 2007 2580 221310785 221310228 2.370000e-145 525.0
19 TraesCS3D01G272600 chr5D 80.731 602 75 25 2009 2595 485778282 485778857 5.320000e-117 431.0
20 TraesCS3D01G272600 chr2D 84.981 526 41 15 2009 2532 560206329 560206818 1.440000e-137 499.0
21 TraesCS3D01G272600 chr2D 89.189 111 6 4 2557 2667 602784700 602784804 1.680000e-27 134.0
22 TraesCS3D01G272600 chr2D 90.526 95 7 1 1992 2084 649804023 649804117 1.010000e-24 124.0
23 TraesCS3D01G272600 chr7A 80.622 707 61 32 2007 2667 511055933 511056609 6.740000e-131 477.0
24 TraesCS3D01G272600 chr7A 80.363 331 25 16 2007 2320 598214036 598214343 5.840000e-52 215.0
25 TraesCS3D01G272600 chr7A 89.524 105 5 3 2563 2667 507450617 507450519 7.820000e-26 128.0
26 TraesCS3D01G272600 chr1D 81.596 614 62 21 2007 2595 156011987 156011400 6.790000e-126 460.0
27 TraesCS3D01G272600 chr5A 78.846 572 74 21 2007 2569 599451163 599450630 2.570000e-90 342.0
28 TraesCS3D01G272600 chr5A 80.972 247 19 11 2445 2667 585221287 585221045 1.280000e-38 171.0
29 TraesCS3D01G272600 chr6D 80.242 496 47 22 2007 2474 80474142 80473670 2.580000e-85 326.0
30 TraesCS3D01G272600 chr4A 84.211 114 12 5 2007 2116 624232462 624232351 3.660000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G272600 chr3D 378199817 378202507 2690 False 4970.0 4970 100.0000 1 2691 1 chr3D.!!$F1 2690
1 TraesCS3D01G272600 chr3D 564086400 564087132 732 False 433.5 726 89.4710 2009 2667 2 chr3D.!!$F3 658
2 TraesCS3D01G272600 chr3D 536270327 536271048 721 False 397.5 654 88.9345 2009 2665 2 chr3D.!!$F2 656
3 TraesCS3D01G272600 chr3B 492757315 492759012 1697 False 2449.0 2449 92.8910 329 2009 1 chr3B.!!$F1 1680
4 TraesCS3D01G272600 chr3A 502278652 502279613 961 False 1367.0 1367 92.3080 976 1944 1 chr3A.!!$F5 968
5 TraesCS3D01G272600 chr3A 502272664 502273308 644 False 902.0 902 92.0120 329 971 1 chr3A.!!$F4 642
6 TraesCS3D01G272600 chr3A 44228837 44229431 594 False 676.0 676 87.5620 2003 2590 1 chr3A.!!$F3 587
7 TraesCS3D01G272600 chr3A 43644699 43645295 596 False 673.0 673 87.4590 2003 2590 1 chr3A.!!$F2 587
8 TraesCS3D01G272600 chr3A 43033313 43033909 596 False 662.0 662 87.1290 2003 2590 1 chr3A.!!$F1 587
9 TraesCS3D01G272600 chr1A 321400859 321401520 661 True 715.0 715 86.4580 2009 2667 1 chr1A.!!$R1 658
10 TraesCS3D01G272600 chr7D 221822808 221823393 585 True 712.0 712 88.7580 2009 2595 1 chr7D.!!$R1 586
11 TraesCS3D01G272600 chr7B 720341894 720342493 599 False 676.0 676 87.5000 2003 2590 1 chr7B.!!$F1 587
12 TraesCS3D01G272600 chr4D 66957248 66957970 722 True 418.0 673 91.3170 2009 2667 2 chr4D.!!$R1 658
13 TraesCS3D01G272600 chr5D 221310228 221310785 557 True 525.0 525 83.9590 2007 2580 1 chr5D.!!$R1 573
14 TraesCS3D01G272600 chr5D 485778282 485778857 575 False 431.0 431 80.7310 2009 2595 1 chr5D.!!$F1 586
15 TraesCS3D01G272600 chr7A 511055933 511056609 676 False 477.0 477 80.6220 2007 2667 1 chr7A.!!$F1 660
16 TraesCS3D01G272600 chr1D 156011400 156011987 587 True 460.0 460 81.5960 2007 2595 1 chr1D.!!$R1 588
17 TraesCS3D01G272600 chr5A 599450630 599451163 533 True 342.0 342 78.8460 2007 2569 1 chr5A.!!$R2 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.032952 TGAGTTCGTCGTTGAAGGGG 59.967 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 1746 0.038526 ACACAACGTCCGGTCTGATC 60.039 55.0 0.0 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.876309 AAAATACCAGTGGTGTGTCCT 57.124 42.857 25.64 0.00 36.19 3.85
21 22 4.986054 AAAATACCAGTGGTGTGTCCTA 57.014 40.909 25.64 2.70 36.19 2.94
22 23 5.514500 AAAATACCAGTGGTGTGTCCTAT 57.486 39.130 25.64 5.30 36.19 2.57
23 24 4.487714 AATACCAGTGGTGTGTCCTATG 57.512 45.455 25.64 0.00 36.19 2.23
24 25 1.729586 ACCAGTGGTGTGTCCTATGT 58.270 50.000 15.86 0.00 32.98 2.29
25 26 1.623811 ACCAGTGGTGTGTCCTATGTC 59.376 52.381 15.86 0.00 32.98 3.06
26 27 1.902508 CCAGTGGTGTGTCCTATGTCT 59.097 52.381 0.00 0.00 37.07 3.41
27 28 2.354103 CCAGTGGTGTGTCCTATGTCTG 60.354 54.545 0.00 0.00 37.07 3.51
28 29 2.562738 CAGTGGTGTGTCCTATGTCTGA 59.437 50.000 0.00 0.00 37.07 3.27
29 30 3.196469 CAGTGGTGTGTCCTATGTCTGAT 59.804 47.826 0.00 0.00 37.07 2.90
30 31 3.196469 AGTGGTGTGTCCTATGTCTGATG 59.804 47.826 0.00 0.00 37.07 3.07
31 32 3.055819 GTGGTGTGTCCTATGTCTGATGT 60.056 47.826 0.00 0.00 37.07 3.06
32 33 3.195610 TGGTGTGTCCTATGTCTGATGTC 59.804 47.826 0.00 0.00 37.07 3.06
33 34 3.430929 GGTGTGTCCTATGTCTGATGTCC 60.431 52.174 0.00 0.00 0.00 4.02
34 35 2.766263 TGTGTCCTATGTCTGATGTCCC 59.234 50.000 0.00 0.00 0.00 4.46
35 36 2.766263 GTGTCCTATGTCTGATGTCCCA 59.234 50.000 0.00 0.00 0.00 4.37
36 37 2.766263 TGTCCTATGTCTGATGTCCCAC 59.234 50.000 0.00 0.00 0.00 4.61
37 38 3.034635 GTCCTATGTCTGATGTCCCACT 58.965 50.000 0.00 0.00 0.00 4.00
38 39 3.033909 TCCTATGTCTGATGTCCCACTG 58.966 50.000 0.00 0.00 0.00 3.66
39 40 3.033909 CCTATGTCTGATGTCCCACTGA 58.966 50.000 0.00 0.00 0.00 3.41
40 41 3.645212 CCTATGTCTGATGTCCCACTGAT 59.355 47.826 0.00 0.00 0.00 2.90
41 42 4.835056 CCTATGTCTGATGTCCCACTGATA 59.165 45.833 0.00 0.00 0.00 2.15
42 43 5.483231 CCTATGTCTGATGTCCCACTGATAT 59.517 44.000 0.00 0.00 0.00 1.63
43 44 4.677673 TGTCTGATGTCCCACTGATATG 57.322 45.455 0.00 0.00 0.00 1.78
44 45 4.033009 TGTCTGATGTCCCACTGATATGT 58.967 43.478 0.00 0.00 0.00 2.29
45 46 4.100035 TGTCTGATGTCCCACTGATATGTC 59.900 45.833 0.00 0.00 0.00 3.06
46 47 3.643320 TCTGATGTCCCACTGATATGTCC 59.357 47.826 0.00 0.00 0.00 4.02
47 48 3.645212 CTGATGTCCCACTGATATGTCCT 59.355 47.826 0.00 0.00 0.00 3.85
48 49 4.814967 TGATGTCCCACTGATATGTCCTA 58.185 43.478 0.00 0.00 0.00 2.94
49 50 5.406163 TGATGTCCCACTGATATGTCCTAT 58.594 41.667 0.00 0.00 0.00 2.57
50 51 5.246883 TGATGTCCCACTGATATGTCCTATG 59.753 44.000 0.00 0.00 0.00 2.23
51 52 4.556697 TGTCCCACTGATATGTCCTATGT 58.443 43.478 0.00 0.00 0.00 2.29
52 53 4.588951 TGTCCCACTGATATGTCCTATGTC 59.411 45.833 0.00 0.00 0.00 3.06
53 54 4.021016 GTCCCACTGATATGTCCTATGTCC 60.021 50.000 0.00 0.00 0.00 4.02
54 55 4.140686 TCCCACTGATATGTCCTATGTCCT 60.141 45.833 0.00 0.00 0.00 3.85
55 56 5.075900 TCCCACTGATATGTCCTATGTCCTA 59.924 44.000 0.00 0.00 0.00 2.94
56 57 5.960811 CCCACTGATATGTCCTATGTCCTAT 59.039 44.000 0.00 0.00 0.00 2.57
57 58 6.127225 CCCACTGATATGTCCTATGTCCTATG 60.127 46.154 0.00 0.00 0.00 2.23
58 59 6.665248 CCACTGATATGTCCTATGTCCTATGA 59.335 42.308 0.00 0.00 0.00 2.15
59 60 7.344093 CCACTGATATGTCCTATGTCCTATGAT 59.656 40.741 0.00 0.00 0.00 2.45
60 61 9.413734 CACTGATATGTCCTATGTCCTATGATA 57.586 37.037 0.00 0.00 0.00 2.15
67 68 9.639563 ATGTCCTATGTCCTATGATATAGTCTG 57.360 37.037 9.73 0.00 39.68 3.51
68 69 7.558081 TGTCCTATGTCCTATGATATAGTCTGC 59.442 40.741 9.73 0.00 39.68 4.26
69 70 7.777910 GTCCTATGTCCTATGATATAGTCTGCT 59.222 40.741 9.73 0.00 39.68 4.24
70 71 9.004231 TCCTATGTCCTATGATATAGTCTGCTA 57.996 37.037 9.73 0.00 39.68 3.49
71 72 9.806448 CCTATGTCCTATGATATAGTCTGCTAT 57.194 37.037 9.73 0.00 39.68 2.97
74 75 9.706529 ATGTCCTATGATATAGTCTGCTATGAA 57.293 33.333 0.00 0.00 38.31 2.57
75 76 8.961634 TGTCCTATGATATAGTCTGCTATGAAC 58.038 37.037 0.00 0.00 38.31 3.18
76 77 8.961634 GTCCTATGATATAGTCTGCTATGAACA 58.038 37.037 0.00 0.00 38.31 3.18
77 78 9.533831 TCCTATGATATAGTCTGCTATGAACAA 57.466 33.333 0.00 0.00 38.31 2.83
78 79 9.800433 CCTATGATATAGTCTGCTATGAACAAG 57.200 37.037 0.00 0.00 38.31 3.16
82 83 9.317936 TGATATAGTCTGCTATGAACAAGTTTG 57.682 33.333 0.00 0.00 38.31 2.93
83 84 9.534565 GATATAGTCTGCTATGAACAAGTTTGA 57.465 33.333 0.00 0.00 38.31 2.69
84 85 9.890629 ATATAGTCTGCTATGAACAAGTTTGAA 57.109 29.630 0.00 0.00 38.31 2.69
85 86 6.305693 AGTCTGCTATGAACAAGTTTGAAC 57.694 37.500 0.00 0.00 0.00 3.18
86 87 6.058183 AGTCTGCTATGAACAAGTTTGAACT 58.942 36.000 0.00 0.00 42.04 3.01
87 88 7.217200 AGTCTGCTATGAACAAGTTTGAACTA 58.783 34.615 0.00 0.00 38.57 2.24
88 89 7.880195 AGTCTGCTATGAACAAGTTTGAACTAT 59.120 33.333 0.00 0.00 38.57 2.12
89 90 7.959651 GTCTGCTATGAACAAGTTTGAACTATG 59.040 37.037 0.00 1.68 38.57 2.23
90 91 7.661437 TCTGCTATGAACAAGTTTGAACTATGT 59.339 33.333 0.00 2.23 38.57 2.29
91 92 7.806690 TGCTATGAACAAGTTTGAACTATGTC 58.193 34.615 0.00 0.00 38.57 3.06
92 93 7.443879 TGCTATGAACAAGTTTGAACTATGTCA 59.556 33.333 0.00 2.14 38.57 3.58
93 94 8.454106 GCTATGAACAAGTTTGAACTATGTCAT 58.546 33.333 14.87 14.87 38.57 3.06
97 98 9.283768 TGAACAAGTTTGAACTATGTCATATGT 57.716 29.630 1.90 0.00 38.57 2.29
99 100 9.897744 AACAAGTTTGAACTATGTCATATGTTG 57.102 29.630 1.90 0.00 38.57 3.33
100 101 9.066892 ACAAGTTTGAACTATGTCATATGTTGT 57.933 29.630 1.90 0.00 38.57 3.32
101 102 9.333497 CAAGTTTGAACTATGTCATATGTTGTG 57.667 33.333 1.90 0.00 38.57 3.33
102 103 8.621532 AGTTTGAACTATGTCATATGTTGTGT 57.378 30.769 1.90 0.00 37.52 3.72
103 104 9.066892 AGTTTGAACTATGTCATATGTTGTGTT 57.933 29.630 1.90 3.56 37.52 3.32
104 105 9.117145 GTTTGAACTATGTCATATGTTGTGTTG 57.883 33.333 1.90 0.00 0.00 3.33
105 106 6.841119 TGAACTATGTCATATGTTGTGTTGC 58.159 36.000 1.90 0.00 0.00 4.17
106 107 6.429385 TGAACTATGTCATATGTTGTGTTGCA 59.571 34.615 1.90 0.00 0.00 4.08
107 108 7.121020 TGAACTATGTCATATGTTGTGTTGCAT 59.879 33.333 1.90 0.00 0.00 3.96
108 109 7.395190 ACTATGTCATATGTTGTGTTGCATT 57.605 32.000 1.90 0.00 0.00 3.56
109 110 7.829725 ACTATGTCATATGTTGTGTTGCATTT 58.170 30.769 1.90 0.00 0.00 2.32
110 111 6.954616 ATGTCATATGTTGTGTTGCATTTG 57.045 33.333 1.90 0.00 0.00 2.32
111 112 6.081872 TGTCATATGTTGTGTTGCATTTGA 57.918 33.333 1.90 0.00 33.14 2.69
112 113 6.510536 TGTCATATGTTGTGTTGCATTTGAA 58.489 32.000 1.90 0.00 35.80 2.69
113 114 7.153315 TGTCATATGTTGTGTTGCATTTGAAT 58.847 30.769 1.90 0.00 35.80 2.57
114 115 7.656542 TGTCATATGTTGTGTTGCATTTGAATT 59.343 29.630 1.90 0.00 35.80 2.17
115 116 9.138062 GTCATATGTTGTGTTGCATTTGAATTA 57.862 29.630 1.90 0.00 35.80 1.40
116 117 9.872721 TCATATGTTGTGTTGCATTTGAATTAT 57.127 25.926 1.90 0.00 32.82 1.28
117 118 9.909043 CATATGTTGTGTTGCATTTGAATTATG 57.091 29.630 0.00 0.00 0.00 1.90
118 119 6.225703 TGTTGTGTTGCATTTGAATTATGC 57.774 33.333 4.95 4.95 46.63 3.14
119 120 5.178996 TGTTGTGTTGCATTTGAATTATGCC 59.821 36.000 8.77 0.00 46.05 4.40
120 121 4.252073 TGTGTTGCATTTGAATTATGCCC 58.748 39.130 8.77 1.75 46.05 5.36
121 122 4.020396 TGTGTTGCATTTGAATTATGCCCT 60.020 37.500 8.77 0.00 46.05 5.19
122 123 5.186603 TGTGTTGCATTTGAATTATGCCCTA 59.813 36.000 8.77 0.00 46.05 3.53
123 124 6.127111 TGTGTTGCATTTGAATTATGCCCTAT 60.127 34.615 8.77 0.00 46.05 2.57
124 125 6.201425 GTGTTGCATTTGAATTATGCCCTATG 59.799 38.462 8.77 0.00 46.05 2.23
125 126 6.127111 TGTTGCATTTGAATTATGCCCTATGT 60.127 34.615 8.77 0.00 46.05 2.29
126 127 6.482898 TGCATTTGAATTATGCCCTATGTT 57.517 33.333 8.77 0.00 46.05 2.71
127 128 6.282167 TGCATTTGAATTATGCCCTATGTTG 58.718 36.000 8.77 0.00 46.05 3.33
128 129 6.127111 TGCATTTGAATTATGCCCTATGTTGT 60.127 34.615 8.77 0.00 46.05 3.32
129 130 7.069208 TGCATTTGAATTATGCCCTATGTTGTA 59.931 33.333 8.77 0.00 46.05 2.41
130 131 8.090214 GCATTTGAATTATGCCCTATGTTGTAT 58.910 33.333 0.89 0.00 41.94 2.29
131 132 9.414295 CATTTGAATTATGCCCTATGTTGTATG 57.586 33.333 0.00 0.00 0.00 2.39
132 133 8.759481 TTTGAATTATGCCCTATGTTGTATGA 57.241 30.769 0.00 0.00 0.00 2.15
133 134 8.759481 TTGAATTATGCCCTATGTTGTATGAA 57.241 30.769 0.00 0.00 0.00 2.57
134 135 8.165239 TGAATTATGCCCTATGTTGTATGAAC 57.835 34.615 0.00 0.00 0.00 3.18
135 136 7.998383 TGAATTATGCCCTATGTTGTATGAACT 59.002 33.333 0.00 0.00 0.00 3.01
136 137 9.502091 GAATTATGCCCTATGTTGTATGAACTA 57.498 33.333 0.00 0.00 0.00 2.24
138 139 8.846943 TTATGCCCTATGTTGTATGAACTATG 57.153 34.615 0.00 0.00 0.00 2.23
139 140 6.247229 TGCCCTATGTTGTATGAACTATGT 57.753 37.500 0.00 0.00 0.00 2.29
140 141 6.288294 TGCCCTATGTTGTATGAACTATGTC 58.712 40.000 0.00 0.00 0.00 3.06
141 142 6.099701 TGCCCTATGTTGTATGAACTATGTCT 59.900 38.462 0.00 0.00 0.00 3.41
142 143 6.992715 GCCCTATGTTGTATGAACTATGTCTT 59.007 38.462 0.00 0.00 0.00 3.01
143 144 8.148351 GCCCTATGTTGTATGAACTATGTCTTA 58.852 37.037 0.00 0.00 0.00 2.10
162 163 9.783081 ATGTCTTATCTATATTGTGTTGCATGA 57.217 29.630 0.00 0.00 0.00 3.07
163 164 9.612066 TGTCTTATCTATATTGTGTTGCATGAA 57.388 29.630 0.00 0.00 0.00 2.57
164 165 9.869844 GTCTTATCTATATTGTGTTGCATGAAC 57.130 33.333 0.00 0.00 34.84 3.18
165 166 9.836864 TCTTATCTATATTGTGTTGCATGAACT 57.163 29.630 0.00 0.00 35.37 3.01
167 168 9.836864 TTATCTATATTGTGTTGCATGAACTCT 57.163 29.630 0.00 0.00 35.37 3.24
168 169 7.543947 TCTATATTGTGTTGCATGAACTCTG 57.456 36.000 0.00 0.00 35.37 3.35
169 170 7.105588 TCTATATTGTGTTGCATGAACTCTGT 58.894 34.615 0.00 0.00 35.37 3.41
170 171 4.924305 ATTGTGTTGCATGAACTCTGTT 57.076 36.364 0.00 0.00 35.37 3.16
171 172 3.696281 TGTGTTGCATGAACTCTGTTG 57.304 42.857 0.00 0.00 35.37 3.33
172 173 3.016031 TGTGTTGCATGAACTCTGTTGT 58.984 40.909 0.00 0.00 35.37 3.32
173 174 3.181498 TGTGTTGCATGAACTCTGTTGTG 60.181 43.478 0.00 0.00 35.37 3.33
174 175 3.016031 TGTTGCATGAACTCTGTTGTGT 58.984 40.909 0.00 0.00 35.37 3.72
175 176 3.181498 TGTTGCATGAACTCTGTTGTGTG 60.181 43.478 0.00 0.00 35.37 3.82
176 177 2.916640 TGCATGAACTCTGTTGTGTGA 58.083 42.857 0.00 0.00 0.00 3.58
177 178 3.479489 TGCATGAACTCTGTTGTGTGAT 58.521 40.909 0.00 0.00 0.00 3.06
178 179 3.251487 TGCATGAACTCTGTTGTGTGATG 59.749 43.478 0.00 0.00 0.00 3.07
179 180 3.818387 CATGAACTCTGTTGTGTGATGC 58.182 45.455 0.00 0.00 0.00 3.91
180 181 2.221169 TGAACTCTGTTGTGTGATGCC 58.779 47.619 0.00 0.00 0.00 4.40
181 182 1.195448 GAACTCTGTTGTGTGATGCCG 59.805 52.381 0.00 0.00 0.00 5.69
182 183 0.106708 ACTCTGTTGTGTGATGCCGT 59.893 50.000 0.00 0.00 0.00 5.68
183 184 1.343142 ACTCTGTTGTGTGATGCCGTA 59.657 47.619 0.00 0.00 0.00 4.02
184 185 2.028112 ACTCTGTTGTGTGATGCCGTAT 60.028 45.455 0.00 0.00 0.00 3.06
185 186 2.345876 TCTGTTGTGTGATGCCGTATG 58.654 47.619 0.00 0.00 0.00 2.39
186 187 2.028567 TCTGTTGTGTGATGCCGTATGA 60.029 45.455 0.00 0.00 0.00 2.15
187 188 2.938451 CTGTTGTGTGATGCCGTATGAT 59.062 45.455 0.00 0.00 0.00 2.45
188 189 2.677337 TGTTGTGTGATGCCGTATGATG 59.323 45.455 0.00 0.00 0.00 3.07
189 190 2.677836 GTTGTGTGATGCCGTATGATGT 59.322 45.455 0.00 0.00 0.00 3.06
190 191 3.810310 TGTGTGATGCCGTATGATGTA 57.190 42.857 0.00 0.00 0.00 2.29
191 192 4.335400 TGTGTGATGCCGTATGATGTAT 57.665 40.909 0.00 0.00 0.00 2.29
192 193 4.702831 TGTGTGATGCCGTATGATGTATT 58.297 39.130 0.00 0.00 0.00 1.89
193 194 4.511082 TGTGTGATGCCGTATGATGTATTG 59.489 41.667 0.00 0.00 0.00 1.90
194 195 4.749598 GTGTGATGCCGTATGATGTATTGA 59.250 41.667 0.00 0.00 0.00 2.57
195 196 5.409520 GTGTGATGCCGTATGATGTATTGAT 59.590 40.000 0.00 0.00 0.00 2.57
196 197 5.409214 TGTGATGCCGTATGATGTATTGATG 59.591 40.000 0.00 0.00 0.00 3.07
197 198 5.639082 GTGATGCCGTATGATGTATTGATGA 59.361 40.000 0.00 0.00 0.00 2.92
198 199 6.314648 GTGATGCCGTATGATGTATTGATGAT 59.685 38.462 0.00 0.00 0.00 2.45
199 200 6.536224 TGATGCCGTATGATGTATTGATGATC 59.464 38.462 0.00 0.00 0.00 2.92
200 201 6.041423 TGCCGTATGATGTATTGATGATCT 57.959 37.500 0.00 0.00 0.00 2.75
201 202 7.169158 TGCCGTATGATGTATTGATGATCTA 57.831 36.000 0.00 0.00 0.00 1.98
202 203 7.035612 TGCCGTATGATGTATTGATGATCTAC 58.964 38.462 0.00 0.00 0.00 2.59
203 204 7.035612 GCCGTATGATGTATTGATGATCTACA 58.964 38.462 0.00 0.00 0.00 2.74
204 205 7.708322 GCCGTATGATGTATTGATGATCTACAT 59.292 37.037 6.95 6.95 42.47 2.29
214 215 4.790765 GATGATCTACATCCGATGTCCA 57.209 45.455 17.38 11.53 46.78 4.02
215 216 5.336150 GATGATCTACATCCGATGTCCAT 57.664 43.478 17.38 15.09 46.78 3.41
216 217 6.456795 GATGATCTACATCCGATGTCCATA 57.543 41.667 17.38 0.00 46.78 2.74
217 218 5.644977 TGATCTACATCCGATGTCCATAC 57.355 43.478 17.38 7.71 43.67 2.39
218 219 5.076873 TGATCTACATCCGATGTCCATACA 58.923 41.667 17.38 9.89 43.67 2.29
219 220 5.538433 TGATCTACATCCGATGTCCATACAA 59.462 40.000 17.38 0.00 43.67 2.41
220 221 5.453567 TCTACATCCGATGTCCATACAAG 57.546 43.478 17.38 7.91 43.67 3.16
221 222 5.137551 TCTACATCCGATGTCCATACAAGA 58.862 41.667 17.38 10.02 43.67 3.02
222 223 4.963318 ACATCCGATGTCCATACAAGAT 57.037 40.909 8.28 0.00 39.92 2.40
223 224 4.635223 ACATCCGATGTCCATACAAGATG 58.365 43.478 8.28 11.71 39.92 2.90
224 225 3.111853 TCCGATGTCCATACAAGATGC 57.888 47.619 0.00 0.00 39.58 3.91
225 226 2.433970 TCCGATGTCCATACAAGATGCA 59.566 45.455 0.00 0.00 39.58 3.96
226 227 3.071457 TCCGATGTCCATACAAGATGCAT 59.929 43.478 0.00 0.00 39.58 3.96
227 228 4.283212 TCCGATGTCCATACAAGATGCATA 59.717 41.667 0.00 0.00 39.58 3.14
228 229 4.628766 CCGATGTCCATACAAGATGCATAG 59.371 45.833 0.00 0.00 39.58 2.23
229 230 5.473039 CGATGTCCATACAAGATGCATAGA 58.527 41.667 0.00 0.00 39.58 1.98
230 231 5.928264 CGATGTCCATACAAGATGCATAGAA 59.072 40.000 0.00 0.00 39.58 2.10
231 232 6.424812 CGATGTCCATACAAGATGCATAGAAA 59.575 38.462 0.00 0.00 39.58 2.52
232 233 7.118825 CGATGTCCATACAAGATGCATAGAAAT 59.881 37.037 0.00 0.00 39.58 2.17
233 234 7.500720 TGTCCATACAAGATGCATAGAAATG 57.499 36.000 0.00 0.44 32.31 2.32
234 235 7.281841 TGTCCATACAAGATGCATAGAAATGA 58.718 34.615 0.00 0.00 31.37 2.57
235 236 7.443272 TGTCCATACAAGATGCATAGAAATGAG 59.557 37.037 0.00 0.00 31.37 2.90
236 237 7.443575 GTCCATACAAGATGCATAGAAATGAGT 59.556 37.037 0.00 0.00 34.84 3.41
237 238 7.443272 TCCATACAAGATGCATAGAAATGAGTG 59.557 37.037 0.00 0.48 34.84 3.51
238 239 7.443272 CCATACAAGATGCATAGAAATGAGTGA 59.557 37.037 0.00 0.00 34.84 3.41
239 240 6.922247 ACAAGATGCATAGAAATGAGTGAG 57.078 37.500 0.00 0.00 34.84 3.51
240 241 5.821470 ACAAGATGCATAGAAATGAGTGAGG 59.179 40.000 0.00 0.00 34.84 3.86
241 242 5.883685 AGATGCATAGAAATGAGTGAGGA 57.116 39.130 0.00 0.00 34.84 3.71
242 243 5.856156 AGATGCATAGAAATGAGTGAGGAG 58.144 41.667 0.00 0.00 34.84 3.69
243 244 5.601729 AGATGCATAGAAATGAGTGAGGAGA 59.398 40.000 0.00 0.00 34.84 3.71
244 245 5.682234 TGCATAGAAATGAGTGAGGAGAA 57.318 39.130 0.00 0.00 34.84 2.87
245 246 6.053632 TGCATAGAAATGAGTGAGGAGAAA 57.946 37.500 0.00 0.00 34.84 2.52
246 247 6.656902 TGCATAGAAATGAGTGAGGAGAAAT 58.343 36.000 0.00 0.00 34.84 2.17
247 248 6.541278 TGCATAGAAATGAGTGAGGAGAAATG 59.459 38.462 0.00 0.00 34.84 2.32
248 249 6.765036 GCATAGAAATGAGTGAGGAGAAATGA 59.235 38.462 0.00 0.00 34.84 2.57
249 250 7.041916 GCATAGAAATGAGTGAGGAGAAATGAG 60.042 40.741 0.00 0.00 34.84 2.90
250 251 6.371595 AGAAATGAGTGAGGAGAAATGAGT 57.628 37.500 0.00 0.00 0.00 3.41
251 252 6.777782 AGAAATGAGTGAGGAGAAATGAGTT 58.222 36.000 0.00 0.00 0.00 3.01
252 253 6.878389 AGAAATGAGTGAGGAGAAATGAGTTC 59.122 38.462 0.00 0.00 36.38 3.01
253 254 4.179926 TGAGTGAGGAGAAATGAGTTCG 57.820 45.455 0.00 0.00 41.52 3.95
254 255 3.574396 TGAGTGAGGAGAAATGAGTTCGT 59.426 43.478 0.00 0.00 41.52 3.85
255 256 4.170256 GAGTGAGGAGAAATGAGTTCGTC 58.830 47.826 0.00 0.00 41.52 4.20
256 257 2.917971 GTGAGGAGAAATGAGTTCGTCG 59.082 50.000 0.00 0.00 41.52 5.12
257 258 2.557056 TGAGGAGAAATGAGTTCGTCGT 59.443 45.455 0.00 0.00 41.52 4.34
258 259 3.005472 TGAGGAGAAATGAGTTCGTCGTT 59.995 43.478 0.00 0.00 41.52 3.85
259 260 3.318017 AGGAGAAATGAGTTCGTCGTTG 58.682 45.455 0.00 0.00 41.52 4.10
260 261 3.005472 AGGAGAAATGAGTTCGTCGTTGA 59.995 43.478 0.00 0.00 41.52 3.18
261 262 3.739300 GGAGAAATGAGTTCGTCGTTGAA 59.261 43.478 0.00 0.00 41.52 2.69
262 263 4.143305 GGAGAAATGAGTTCGTCGTTGAAG 60.143 45.833 0.00 0.00 41.52 3.02
263 264 3.741344 AGAAATGAGTTCGTCGTTGAAGG 59.259 43.478 0.00 0.00 41.52 3.46
264 265 2.080286 ATGAGTTCGTCGTTGAAGGG 57.920 50.000 0.00 0.00 0.00 3.95
265 266 0.032952 TGAGTTCGTCGTTGAAGGGG 59.967 55.000 0.00 0.00 0.00 4.79
266 267 0.316204 GAGTTCGTCGTTGAAGGGGA 59.684 55.000 0.00 0.00 0.00 4.81
267 268 0.317479 AGTTCGTCGTTGAAGGGGAG 59.683 55.000 0.00 0.00 0.00 4.30
268 269 0.669625 GTTCGTCGTTGAAGGGGAGG 60.670 60.000 0.00 0.00 0.00 4.30
269 270 0.828762 TTCGTCGTTGAAGGGGAGGA 60.829 55.000 0.00 0.00 0.00 3.71
270 271 1.215647 CGTCGTTGAAGGGGAGGAG 59.784 63.158 0.00 0.00 0.00 3.69
271 272 1.248785 CGTCGTTGAAGGGGAGGAGA 61.249 60.000 0.00 0.00 0.00 3.71
272 273 0.974383 GTCGTTGAAGGGGAGGAGAA 59.026 55.000 0.00 0.00 0.00 2.87
273 274 1.346722 GTCGTTGAAGGGGAGGAGAAA 59.653 52.381 0.00 0.00 0.00 2.52
274 275 2.027100 GTCGTTGAAGGGGAGGAGAAAT 60.027 50.000 0.00 0.00 0.00 2.17
275 276 2.642807 TCGTTGAAGGGGAGGAGAAATT 59.357 45.455 0.00 0.00 0.00 1.82
276 277 2.749621 CGTTGAAGGGGAGGAGAAATTG 59.250 50.000 0.00 0.00 0.00 2.32
277 278 3.092301 GTTGAAGGGGAGGAGAAATTGG 58.908 50.000 0.00 0.00 0.00 3.16
278 279 1.640670 TGAAGGGGAGGAGAAATTGGG 59.359 52.381 0.00 0.00 0.00 4.12
279 280 0.336392 AAGGGGAGGAGAAATTGGGC 59.664 55.000 0.00 0.00 0.00 5.36
280 281 0.850883 AGGGGAGGAGAAATTGGGCA 60.851 55.000 0.00 0.00 0.00 5.36
281 282 0.684479 GGGGAGGAGAAATTGGGCAC 60.684 60.000 0.00 0.00 0.00 5.01
282 283 0.039618 GGGAGGAGAAATTGGGCACA 59.960 55.000 0.00 0.00 0.00 4.57
283 284 1.549950 GGGAGGAGAAATTGGGCACAA 60.550 52.381 2.55 2.55 41.59 3.33
284 285 1.546029 GGAGGAGAAATTGGGCACAAC 59.454 52.381 1.86 0.00 39.87 3.32
285 286 1.546029 GAGGAGAAATTGGGCACAACC 59.454 52.381 1.86 0.00 39.87 3.77
294 295 3.537388 GGCACAACCCTTTGCTGT 58.463 55.556 0.00 0.00 38.85 4.40
295 296 1.822615 GGCACAACCCTTTGCTGTT 59.177 52.632 0.00 0.00 38.85 3.16
296 297 0.249447 GGCACAACCCTTTGCTGTTC 60.249 55.000 0.00 0.00 38.85 3.18
297 298 0.594796 GCACAACCCTTTGCTGTTCG 60.595 55.000 0.00 0.00 36.00 3.95
298 299 0.594796 CACAACCCTTTGCTGTTCGC 60.595 55.000 0.00 0.00 36.00 4.70
299 300 1.370414 CAACCCTTTGCTGTTCGCG 60.370 57.895 0.00 0.00 43.27 5.87
300 301 2.551912 AACCCTTTGCTGTTCGCGG 61.552 57.895 6.13 0.00 43.27 6.46
301 302 2.668212 CCCTTTGCTGTTCGCGGA 60.668 61.111 6.13 0.00 43.27 5.54
302 303 2.040544 CCCTTTGCTGTTCGCGGAT 61.041 57.895 6.13 0.00 43.27 4.18
303 304 0.742990 CCCTTTGCTGTTCGCGGATA 60.743 55.000 6.13 0.00 43.27 2.59
304 305 1.299541 CCTTTGCTGTTCGCGGATAT 58.700 50.000 6.13 0.00 43.27 1.63
305 306 1.670811 CCTTTGCTGTTCGCGGATATT 59.329 47.619 6.13 0.00 43.27 1.28
306 307 2.097466 CCTTTGCTGTTCGCGGATATTT 59.903 45.455 6.13 0.00 43.27 1.40
307 308 3.354397 CTTTGCTGTTCGCGGATATTTC 58.646 45.455 6.13 0.00 43.27 2.17
308 309 1.295792 TGCTGTTCGCGGATATTTCC 58.704 50.000 6.13 0.00 43.27 3.13
321 322 4.315803 GGATATTTCCGTGGACATACAGG 58.684 47.826 0.00 0.00 30.72 4.00
322 323 4.039973 GGATATTTCCGTGGACATACAGGA 59.960 45.833 0.00 0.00 30.72 3.86
323 324 3.543680 ATTTCCGTGGACATACAGGAG 57.456 47.619 0.00 0.00 32.03 3.69
324 325 0.535335 TTCCGTGGACATACAGGAGC 59.465 55.000 0.00 0.00 32.03 4.70
325 326 0.324368 TCCGTGGACATACAGGAGCT 60.324 55.000 0.00 0.00 0.00 4.09
326 327 0.179100 CCGTGGACATACAGGAGCTG 60.179 60.000 0.00 0.00 37.52 4.24
327 328 0.817654 CGTGGACATACAGGAGCTGA 59.182 55.000 0.00 0.00 35.18 4.26
387 388 0.038618 GGGACGCCCAAAACATTGTC 60.039 55.000 9.72 0.00 44.65 3.18
399 400 4.489306 AAACATTGTCTAGGGGCTCTAC 57.511 45.455 0.00 0.00 0.00 2.59
439 440 6.137794 GGAGACGATCTAAAGTCTGAATGA 57.862 41.667 5.81 0.00 46.52 2.57
443 444 5.911752 ACGATCTAAAGTCTGAATGAGCAT 58.088 37.500 0.00 0.00 0.00 3.79
473 474 7.625828 AAAAAGAGAATTAACCCACTATCCG 57.374 36.000 0.00 0.00 0.00 4.18
474 475 4.338379 AGAGAATTAACCCACTATCCGC 57.662 45.455 0.00 0.00 0.00 5.54
475 476 3.709653 AGAGAATTAACCCACTATCCGCA 59.290 43.478 0.00 0.00 0.00 5.69
494 496 4.229876 CGCAGAAAGAAAAAGGGAATGTC 58.770 43.478 0.00 0.00 0.00 3.06
505 507 8.654094 AGAAAAAGGGAATGTCAAAAATCTGAT 58.346 29.630 0.00 0.00 0.00 2.90
527 529 2.420022 GTCGGATTTCCAACCATGACAG 59.580 50.000 0.00 0.00 35.14 3.51
537 539 0.176680 ACCATGACAGATCTGGCGTC 59.823 55.000 26.08 15.14 42.94 5.19
538 540 0.531532 CCATGACAGATCTGGCGTCC 60.532 60.000 26.08 10.27 42.94 4.79
548 550 1.226802 CTGGCGTCCGAGATGACAG 60.227 63.158 12.66 12.66 46.38 3.51
566 571 1.854743 CAGATGTTGTCGCGAGTATGG 59.145 52.381 10.24 0.00 0.00 2.74
573 578 0.577269 GTCGCGAGTATGGCAATGTC 59.423 55.000 10.24 0.00 41.24 3.06
626 634 3.476552 ACTGAGCACGGAAAATCTTTGA 58.523 40.909 0.00 0.00 0.00 2.69
635 643 3.922240 CGGAAAATCTTTGACATGCTTGG 59.078 43.478 4.44 0.00 0.00 3.61
688 699 3.917380 TGCCAAATTTGTAGCGAAATTCG 59.083 39.130 16.73 11.47 43.89 3.34
724 765 5.249420 AGGAAAAGCTAGATTGTTCAGTCC 58.751 41.667 13.70 6.77 0.00 3.85
893 934 1.702401 TGTTCCACCATAGGTCAGCAA 59.298 47.619 0.00 0.00 31.02 3.91
915 956 2.071540 CACATCCAGCGTGCCTATATG 58.928 52.381 0.00 0.00 0.00 1.78
964 1005 3.095912 TCTATCACTTCCCGGAGTTCA 57.904 47.619 0.73 0.00 0.00 3.18
1042 1083 4.680237 TGCTCGTTGTGGGCCTCG 62.680 66.667 4.53 4.88 0.00 4.63
1205 1249 3.181447 ACCTCCTCCTCGTCGATATTGTA 60.181 47.826 0.00 0.00 0.00 2.41
1639 1683 1.966451 GGCACGGTTGGACTTGGAG 60.966 63.158 0.00 0.00 0.00 3.86
1660 1704 1.085893 TGATAGTCGTCGGCGTTGTA 58.914 50.000 10.18 0.00 39.49 2.41
1663 1707 0.443869 TAGTCGTCGGCGTTGTAGTC 59.556 55.000 10.18 0.00 39.49 2.59
1695 1739 0.810823 GCTCTGGTGCTCTGAGATGC 60.811 60.000 9.28 0.00 42.04 3.91
1702 1746 1.299468 GCTCTGAGATGCCGTACGG 60.299 63.158 30.06 30.06 38.57 4.02
1706 1750 0.668535 CTGAGATGCCGTACGGATCA 59.331 55.000 37.62 28.29 37.50 2.92
1728 1773 4.696172 GGACGTTGTGTTCGCGCG 62.696 66.667 26.76 26.76 0.00 6.86
1745 1790 2.034879 CGGTCATGGTGTGGTCTGC 61.035 63.158 0.00 0.00 0.00 4.26
1753 1798 1.302511 GTGTGGTCTGCGGATGGTT 60.303 57.895 0.00 0.00 0.00 3.67
1931 1976 9.745018 TTCTGAATCTTTTTCTTGAGATATGGT 57.255 29.630 0.00 0.00 32.52 3.55
1936 1981 9.933723 AATCTTTTTCTTGAGATATGGTTTTGG 57.066 29.630 0.00 0.00 32.52 3.28
1972 2017 2.292267 CCCGAAATTCTGACCCATCTG 58.708 52.381 0.00 0.00 0.00 2.90
1981 2026 3.378512 TCTGACCCATCTGCACTTAGAT 58.621 45.455 0.00 0.00 37.90 1.98
2089 2137 1.373590 GCGCTAAAATCGGCTTGGGA 61.374 55.000 0.00 0.00 0.00 4.37
2155 2228 7.762159 AGTTAAAAAGAACTGAATTCGGCAAAA 59.238 29.630 14.40 0.00 42.69 2.44
2160 2233 2.595386 ACTGAATTCGGCAAAATTCGC 58.405 42.857 14.40 0.00 44.85 4.70
2317 2417 3.771491 CGTCCTCGTCGTCGTCGT 61.771 66.667 11.41 0.00 38.33 4.34
2318 2418 2.553268 GTCCTCGTCGTCGTCGTT 59.447 61.111 11.41 0.00 38.33 3.85
2319 2419 1.791283 GTCCTCGTCGTCGTCGTTG 60.791 63.158 11.41 6.30 38.33 4.10
2426 2538 2.792599 GTCGCTGTCGTCGAGGAT 59.207 61.111 11.48 0.00 36.56 3.24
2672 2841 2.264794 GACGATGTCGGCCAACCT 59.735 61.111 2.24 0.00 42.67 3.50
2673 2842 1.810030 GACGATGTCGGCCAACCTC 60.810 63.158 2.24 0.00 42.67 3.85
2674 2843 2.885644 CGATGTCGGCCAACCTCG 60.886 66.667 7.12 7.12 35.37 4.63
2675 2844 2.511600 GATGTCGGCCAACCTCGG 60.512 66.667 2.24 0.00 0.00 4.63
2684 2853 4.735132 CAACCTCGGCGGCGAAGA 62.735 66.667 33.06 13.90 35.61 2.87
2685 2854 3.771160 AACCTCGGCGGCGAAGAT 61.771 61.111 33.06 20.99 35.61 2.40
2686 2855 4.514577 ACCTCGGCGGCGAAGATG 62.515 66.667 33.06 21.97 35.61 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.876309 AGGACACACCACTGGTATTTT 57.124 42.857 0.00 0.00 42.04 1.82
1 2 4.288626 ACATAGGACACACCACTGGTATTT 59.711 41.667 0.00 0.00 42.04 1.40
3 4 3.450904 ACATAGGACACACCACTGGTAT 58.549 45.455 0.00 0.00 42.04 2.73
4 5 2.829720 GACATAGGACACACCACTGGTA 59.170 50.000 0.00 0.00 42.04 3.25
5 6 1.623811 GACATAGGACACACCACTGGT 59.376 52.381 0.00 0.00 42.04 4.00
6 7 1.902508 AGACATAGGACACACCACTGG 59.097 52.381 0.00 0.00 42.04 4.00
7 8 2.562738 TCAGACATAGGACACACCACTG 59.437 50.000 0.00 0.00 42.04 3.66
8 9 2.889512 TCAGACATAGGACACACCACT 58.110 47.619 0.00 0.00 42.04 4.00
9 10 3.055819 ACATCAGACATAGGACACACCAC 60.056 47.826 0.00 0.00 42.04 4.16
10 11 3.173151 ACATCAGACATAGGACACACCA 58.827 45.455 0.00 0.00 42.04 4.17
11 12 3.430929 GGACATCAGACATAGGACACACC 60.431 52.174 0.00 0.00 39.35 4.16
12 13 3.430929 GGGACATCAGACATAGGACACAC 60.431 52.174 0.00 0.00 0.00 3.82
13 14 2.766263 GGGACATCAGACATAGGACACA 59.234 50.000 0.00 0.00 0.00 3.72
14 15 2.766263 TGGGACATCAGACATAGGACAC 59.234 50.000 0.00 0.00 0.00 3.67
15 16 2.766263 GTGGGACATCAGACATAGGACA 59.234 50.000 0.00 0.00 44.52 4.02
16 17 3.034635 AGTGGGACATCAGACATAGGAC 58.965 50.000 0.00 0.00 44.52 3.85
17 18 3.033909 CAGTGGGACATCAGACATAGGA 58.966 50.000 0.00 0.00 44.52 2.94
18 19 3.033909 TCAGTGGGACATCAGACATAGG 58.966 50.000 0.00 0.00 44.52 2.57
19 20 4.952071 ATCAGTGGGACATCAGACATAG 57.048 45.455 0.00 0.00 44.52 2.23
20 21 5.840693 ACATATCAGTGGGACATCAGACATA 59.159 40.000 0.00 0.00 44.52 2.29
21 22 4.657504 ACATATCAGTGGGACATCAGACAT 59.342 41.667 0.00 0.00 44.52 3.06
22 23 4.033009 ACATATCAGTGGGACATCAGACA 58.967 43.478 0.00 0.00 44.52 3.41
23 24 4.502259 GGACATATCAGTGGGACATCAGAC 60.502 50.000 0.00 0.00 44.52 3.51
24 25 3.643320 GGACATATCAGTGGGACATCAGA 59.357 47.826 0.00 0.00 44.52 3.27
25 26 3.645212 AGGACATATCAGTGGGACATCAG 59.355 47.826 0.00 0.00 44.52 2.90
26 27 3.657610 AGGACATATCAGTGGGACATCA 58.342 45.455 0.00 0.00 44.52 3.07
27 28 5.247110 ACATAGGACATATCAGTGGGACATC 59.753 44.000 0.00 0.00 44.52 3.06
28 29 5.158141 ACATAGGACATATCAGTGGGACAT 58.842 41.667 0.00 0.00 44.52 3.06
29 30 4.556697 ACATAGGACATATCAGTGGGACA 58.443 43.478 0.00 0.00 0.00 4.02
30 31 4.021016 GGACATAGGACATATCAGTGGGAC 60.021 50.000 0.00 0.00 0.00 4.46
31 32 4.140686 AGGACATAGGACATATCAGTGGGA 60.141 45.833 0.00 0.00 0.00 4.37
32 33 4.163427 AGGACATAGGACATATCAGTGGG 58.837 47.826 0.00 0.00 0.00 4.61
33 34 6.665248 TCATAGGACATAGGACATATCAGTGG 59.335 42.308 0.00 0.00 0.00 4.00
34 35 7.709149 TCATAGGACATAGGACATATCAGTG 57.291 40.000 0.00 0.00 0.00 3.66
41 42 9.639563 CAGACTATATCATAGGACATAGGACAT 57.360 37.037 7.53 0.00 0.00 3.06
42 43 7.558081 GCAGACTATATCATAGGACATAGGACA 59.442 40.741 7.53 0.00 0.00 4.02
43 44 7.777910 AGCAGACTATATCATAGGACATAGGAC 59.222 40.741 7.53 1.91 0.00 3.85
44 45 7.877433 AGCAGACTATATCATAGGACATAGGA 58.123 38.462 7.53 0.00 0.00 2.94
45 46 9.806448 ATAGCAGACTATATCATAGGACATAGG 57.194 37.037 7.53 0.00 37.33 2.57
48 49 9.706529 TTCATAGCAGACTATATCATAGGACAT 57.293 33.333 0.00 0.00 36.96 3.06
49 50 8.961634 GTTCATAGCAGACTATATCATAGGACA 58.038 37.037 0.00 0.00 36.96 4.02
50 51 8.961634 TGTTCATAGCAGACTATATCATAGGAC 58.038 37.037 0.00 0.00 36.96 3.85
51 52 9.533831 TTGTTCATAGCAGACTATATCATAGGA 57.466 33.333 0.00 0.00 36.96 2.94
52 53 9.800433 CTTGTTCATAGCAGACTATATCATAGG 57.200 37.037 0.00 0.00 36.96 2.57
56 57 9.317936 CAAACTTGTTCATAGCAGACTATATCA 57.682 33.333 0.00 0.00 36.96 2.15
57 58 9.534565 TCAAACTTGTTCATAGCAGACTATATC 57.465 33.333 0.00 0.00 36.96 1.63
58 59 9.890629 TTCAAACTTGTTCATAGCAGACTATAT 57.109 29.630 0.00 0.00 36.96 0.86
59 60 9.151471 GTTCAAACTTGTTCATAGCAGACTATA 57.849 33.333 0.00 0.00 36.96 1.31
60 61 7.880195 AGTTCAAACTTGTTCATAGCAGACTAT 59.120 33.333 0.00 0.00 36.23 2.12
61 62 7.217200 AGTTCAAACTTGTTCATAGCAGACTA 58.783 34.615 0.00 0.00 35.21 2.59
62 63 6.058183 AGTTCAAACTTGTTCATAGCAGACT 58.942 36.000 0.00 0.00 35.21 3.24
63 64 6.305693 AGTTCAAACTTGTTCATAGCAGAC 57.694 37.500 0.00 0.00 35.21 3.51
64 65 7.661437 ACATAGTTCAAACTTGTTCATAGCAGA 59.339 33.333 0.00 0.00 40.37 4.26
65 66 7.810658 ACATAGTTCAAACTTGTTCATAGCAG 58.189 34.615 0.00 0.00 40.37 4.24
66 67 7.443879 TGACATAGTTCAAACTTGTTCATAGCA 59.556 33.333 0.00 0.00 40.37 3.49
67 68 7.806690 TGACATAGTTCAAACTTGTTCATAGC 58.193 34.615 0.00 0.00 40.37 2.97
71 72 9.283768 ACATATGACATAGTTCAAACTTGTTCA 57.716 29.630 10.38 2.35 40.37 3.18
73 74 9.897744 CAACATATGACATAGTTCAAACTTGTT 57.102 29.630 10.38 0.88 40.37 2.83
74 75 9.066892 ACAACATATGACATAGTTCAAACTTGT 57.933 29.630 10.38 5.74 40.37 3.16
75 76 9.333497 CACAACATATGACATAGTTCAAACTTG 57.667 33.333 10.38 0.79 40.37 3.16
76 77 9.066892 ACACAACATATGACATAGTTCAAACTT 57.933 29.630 10.38 0.00 40.37 2.66
77 78 8.621532 ACACAACATATGACATAGTTCAAACT 57.378 30.769 10.38 0.46 42.91 2.66
78 79 9.117145 CAACACAACATATGACATAGTTCAAAC 57.883 33.333 10.38 0.00 0.00 2.93
79 80 7.807433 GCAACACAACATATGACATAGTTCAAA 59.193 33.333 10.38 0.00 0.00 2.69
80 81 7.040823 TGCAACACAACATATGACATAGTTCAA 60.041 33.333 10.38 0.00 0.00 2.69
81 82 6.429385 TGCAACACAACATATGACATAGTTCA 59.571 34.615 10.38 5.64 0.00 3.18
82 83 6.841119 TGCAACACAACATATGACATAGTTC 58.159 36.000 10.38 3.59 0.00 3.01
83 84 6.816134 TGCAACACAACATATGACATAGTT 57.184 33.333 10.38 4.81 0.00 2.24
84 85 7.395190 AATGCAACACAACATATGACATAGT 57.605 32.000 10.38 0.00 0.00 2.12
85 86 7.969508 TCAAATGCAACACAACATATGACATAG 59.030 33.333 10.38 0.00 0.00 2.23
86 87 7.824672 TCAAATGCAACACAACATATGACATA 58.175 30.769 10.38 0.00 0.00 2.29
87 88 6.689554 TCAAATGCAACACAACATATGACAT 58.310 32.000 10.38 0.00 0.00 3.06
88 89 6.081872 TCAAATGCAACACAACATATGACA 57.918 33.333 10.38 0.00 0.00 3.58
89 90 7.585286 ATTCAAATGCAACACAACATATGAC 57.415 32.000 10.38 0.00 0.00 3.06
90 91 9.872721 ATAATTCAAATGCAACACAACATATGA 57.127 25.926 10.38 0.00 0.00 2.15
91 92 9.909043 CATAATTCAAATGCAACACAACATATG 57.091 29.630 0.00 0.00 0.00 1.78
105 106 9.414295 CATACAACATAGGGCATAATTCAAATG 57.586 33.333 0.00 0.00 0.00 2.32
106 107 9.365906 TCATACAACATAGGGCATAATTCAAAT 57.634 29.630 0.00 0.00 0.00 2.32
107 108 8.759481 TCATACAACATAGGGCATAATTCAAA 57.241 30.769 0.00 0.00 0.00 2.69
108 109 8.629158 GTTCATACAACATAGGGCATAATTCAA 58.371 33.333 0.00 0.00 0.00 2.69
109 110 7.998383 AGTTCATACAACATAGGGCATAATTCA 59.002 33.333 0.00 0.00 0.00 2.57
110 111 8.396272 AGTTCATACAACATAGGGCATAATTC 57.604 34.615 0.00 0.00 0.00 2.17
112 113 9.453572 CATAGTTCATACAACATAGGGCATAAT 57.546 33.333 0.00 0.00 0.00 1.28
113 114 8.436778 ACATAGTTCATACAACATAGGGCATAA 58.563 33.333 0.00 0.00 0.00 1.90
114 115 7.973402 ACATAGTTCATACAACATAGGGCATA 58.027 34.615 0.00 0.00 0.00 3.14
115 116 6.841601 ACATAGTTCATACAACATAGGGCAT 58.158 36.000 0.00 0.00 0.00 4.40
116 117 6.099701 AGACATAGTTCATACAACATAGGGCA 59.900 38.462 0.00 0.00 0.00 5.36
117 118 6.525629 AGACATAGTTCATACAACATAGGGC 58.474 40.000 0.00 0.00 0.00 5.19
136 137 9.783081 TCATGCAACACAATATAGATAAGACAT 57.217 29.630 0.00 0.00 0.00 3.06
137 138 9.612066 TTCATGCAACACAATATAGATAAGACA 57.388 29.630 0.00 0.00 0.00 3.41
138 139 9.869844 GTTCATGCAACACAATATAGATAAGAC 57.130 33.333 0.00 0.00 34.76 3.01
139 140 9.836864 AGTTCATGCAACACAATATAGATAAGA 57.163 29.630 0.00 0.00 37.48 2.10
141 142 9.836864 AGAGTTCATGCAACACAATATAGATAA 57.163 29.630 0.00 0.00 37.48 1.75
142 143 9.264719 CAGAGTTCATGCAACACAATATAGATA 57.735 33.333 0.00 0.00 37.48 1.98
143 144 7.772292 ACAGAGTTCATGCAACACAATATAGAT 59.228 33.333 0.00 0.00 37.48 1.98
144 145 7.105588 ACAGAGTTCATGCAACACAATATAGA 58.894 34.615 0.00 0.00 37.48 1.98
145 146 7.312657 ACAGAGTTCATGCAACACAATATAG 57.687 36.000 0.00 0.00 37.48 1.31
146 147 7.174772 ACAACAGAGTTCATGCAACACAATATA 59.825 33.333 0.00 0.00 37.48 0.86
147 148 6.016024 ACAACAGAGTTCATGCAACACAATAT 60.016 34.615 0.00 0.00 37.48 1.28
148 149 5.299028 ACAACAGAGTTCATGCAACACAATA 59.701 36.000 0.00 0.00 37.48 1.90
149 150 4.098349 ACAACAGAGTTCATGCAACACAAT 59.902 37.500 0.00 0.00 37.48 2.71
150 151 3.443329 ACAACAGAGTTCATGCAACACAA 59.557 39.130 0.00 0.00 37.48 3.33
151 152 3.016031 ACAACAGAGTTCATGCAACACA 58.984 40.909 0.00 0.00 37.48 3.72
152 153 3.181497 ACACAACAGAGTTCATGCAACAC 60.181 43.478 0.00 4.77 37.48 3.32
153 154 3.016031 ACACAACAGAGTTCATGCAACA 58.984 40.909 0.00 0.00 37.48 3.33
154 155 3.065233 TCACACAACAGAGTTCATGCAAC 59.935 43.478 0.00 0.00 34.86 4.17
155 156 3.277715 TCACACAACAGAGTTCATGCAA 58.722 40.909 0.00 0.00 0.00 4.08
156 157 2.916640 TCACACAACAGAGTTCATGCA 58.083 42.857 0.00 0.00 0.00 3.96
157 158 3.818387 CATCACACAACAGAGTTCATGC 58.182 45.455 0.00 0.00 0.00 4.06
158 159 3.365666 GGCATCACACAACAGAGTTCATG 60.366 47.826 0.00 0.00 0.00 3.07
159 160 2.816087 GGCATCACACAACAGAGTTCAT 59.184 45.455 0.00 0.00 0.00 2.57
160 161 2.221169 GGCATCACACAACAGAGTTCA 58.779 47.619 0.00 0.00 0.00 3.18
161 162 1.195448 CGGCATCACACAACAGAGTTC 59.805 52.381 0.00 0.00 0.00 3.01
162 163 1.229428 CGGCATCACACAACAGAGTT 58.771 50.000 0.00 0.00 0.00 3.01
163 164 0.106708 ACGGCATCACACAACAGAGT 59.893 50.000 0.00 0.00 0.00 3.24
164 165 2.078849 TACGGCATCACACAACAGAG 57.921 50.000 0.00 0.00 0.00 3.35
165 166 2.028567 TCATACGGCATCACACAACAGA 60.029 45.455 0.00 0.00 0.00 3.41
166 167 2.345876 TCATACGGCATCACACAACAG 58.654 47.619 0.00 0.00 0.00 3.16
167 168 2.464157 TCATACGGCATCACACAACA 57.536 45.000 0.00 0.00 0.00 3.33
168 169 2.677836 ACATCATACGGCATCACACAAC 59.322 45.455 0.00 0.00 0.00 3.32
169 170 2.984562 ACATCATACGGCATCACACAA 58.015 42.857 0.00 0.00 0.00 3.33
170 171 2.689553 ACATCATACGGCATCACACA 57.310 45.000 0.00 0.00 0.00 3.72
171 172 4.749598 TCAATACATCATACGGCATCACAC 59.250 41.667 0.00 0.00 0.00 3.82
172 173 4.954875 TCAATACATCATACGGCATCACA 58.045 39.130 0.00 0.00 0.00 3.58
173 174 5.639082 TCATCAATACATCATACGGCATCAC 59.361 40.000 0.00 0.00 0.00 3.06
174 175 5.792741 TCATCAATACATCATACGGCATCA 58.207 37.500 0.00 0.00 0.00 3.07
175 176 6.760298 AGATCATCAATACATCATACGGCATC 59.240 38.462 0.00 0.00 0.00 3.91
176 177 6.647229 AGATCATCAATACATCATACGGCAT 58.353 36.000 0.00 0.00 0.00 4.40
177 178 6.041423 AGATCATCAATACATCATACGGCA 57.959 37.500 0.00 0.00 0.00 5.69
178 179 7.035612 TGTAGATCATCAATACATCATACGGC 58.964 38.462 0.00 0.00 0.00 5.68
193 194 7.577616 TTGTATGGACATCGGATGTAGATCATC 60.578 40.741 22.70 9.06 45.03 2.92
194 195 5.716703 TGTATGGACATCGGATGTAGATCAT 59.283 40.000 22.70 21.73 45.03 2.45
195 196 5.076873 TGTATGGACATCGGATGTAGATCA 58.923 41.667 22.70 17.47 45.03 2.92
196 197 5.644977 TGTATGGACATCGGATGTAGATC 57.355 43.478 22.70 10.77 45.03 2.75
197 198 5.775195 TCTTGTATGGACATCGGATGTAGAT 59.225 40.000 22.70 18.19 45.03 1.98
198 199 5.137551 TCTTGTATGGACATCGGATGTAGA 58.862 41.667 22.70 16.36 45.03 2.59
199 200 5.453567 TCTTGTATGGACATCGGATGTAG 57.546 43.478 22.70 14.48 45.03 2.74
200 201 5.783111 CATCTTGTATGGACATCGGATGTA 58.217 41.667 22.70 9.67 45.03 2.29
202 203 3.434641 GCATCTTGTATGGACATCGGATG 59.565 47.826 16.20 16.20 38.73 3.51
203 204 3.071457 TGCATCTTGTATGGACATCGGAT 59.929 43.478 0.00 0.00 34.86 4.18
204 205 2.433970 TGCATCTTGTATGGACATCGGA 59.566 45.455 0.00 0.00 34.86 4.55
205 206 2.837498 TGCATCTTGTATGGACATCGG 58.163 47.619 0.00 0.00 34.86 4.18
206 207 5.473039 TCTATGCATCTTGTATGGACATCG 58.527 41.667 0.19 0.00 34.86 3.84
207 208 7.734924 TTTCTATGCATCTTGTATGGACATC 57.265 36.000 0.19 0.00 30.65 3.06
208 209 7.940688 TCATTTCTATGCATCTTGTATGGACAT 59.059 33.333 0.19 0.00 30.65 3.06
209 210 7.281841 TCATTTCTATGCATCTTGTATGGACA 58.718 34.615 0.19 0.00 30.65 4.02
210 211 7.443575 ACTCATTTCTATGCATCTTGTATGGAC 59.556 37.037 0.19 0.00 30.65 4.02
211 212 7.443272 CACTCATTTCTATGCATCTTGTATGGA 59.557 37.037 0.19 0.00 29.16 3.41
212 213 7.443272 TCACTCATTTCTATGCATCTTGTATGG 59.557 37.037 0.19 0.29 0.00 2.74
213 214 8.374327 TCACTCATTTCTATGCATCTTGTATG 57.626 34.615 0.19 2.53 0.00 2.39
214 215 7.660617 CCTCACTCATTTCTATGCATCTTGTAT 59.339 37.037 0.19 0.00 0.00 2.29
215 216 6.988580 CCTCACTCATTTCTATGCATCTTGTA 59.011 38.462 0.19 0.00 0.00 2.41
216 217 5.821470 CCTCACTCATTTCTATGCATCTTGT 59.179 40.000 0.19 0.00 0.00 3.16
217 218 6.053650 TCCTCACTCATTTCTATGCATCTTG 58.946 40.000 0.19 0.00 0.00 3.02
218 219 6.099413 TCTCCTCACTCATTTCTATGCATCTT 59.901 38.462 0.19 0.00 0.00 2.40
219 220 5.601729 TCTCCTCACTCATTTCTATGCATCT 59.398 40.000 0.19 0.00 0.00 2.90
220 221 5.851720 TCTCCTCACTCATTTCTATGCATC 58.148 41.667 0.19 0.00 0.00 3.91
221 222 5.883685 TCTCCTCACTCATTTCTATGCAT 57.116 39.130 3.79 3.79 0.00 3.96
222 223 5.682234 TTCTCCTCACTCATTTCTATGCA 57.318 39.130 0.00 0.00 0.00 3.96
223 224 6.765036 TCATTTCTCCTCACTCATTTCTATGC 59.235 38.462 0.00 0.00 0.00 3.14
224 225 7.986320 ACTCATTTCTCCTCACTCATTTCTATG 59.014 37.037 0.00 0.00 0.00 2.23
225 226 8.088463 ACTCATTTCTCCTCACTCATTTCTAT 57.912 34.615 0.00 0.00 0.00 1.98
226 227 7.487822 ACTCATTTCTCCTCACTCATTTCTA 57.512 36.000 0.00 0.00 0.00 2.10
227 228 6.371595 ACTCATTTCTCCTCACTCATTTCT 57.628 37.500 0.00 0.00 0.00 2.52
228 229 6.183360 CGAACTCATTTCTCCTCACTCATTTC 60.183 42.308 0.00 0.00 31.20 2.17
229 230 5.641209 CGAACTCATTTCTCCTCACTCATTT 59.359 40.000 0.00 0.00 31.20 2.32
230 231 5.174395 CGAACTCATTTCTCCTCACTCATT 58.826 41.667 0.00 0.00 31.20 2.57
231 232 4.221703 ACGAACTCATTTCTCCTCACTCAT 59.778 41.667 0.00 0.00 31.20 2.90
232 233 3.574396 ACGAACTCATTTCTCCTCACTCA 59.426 43.478 0.00 0.00 31.20 3.41
233 234 4.170256 GACGAACTCATTTCTCCTCACTC 58.830 47.826 0.00 0.00 31.20 3.51
234 235 3.366476 CGACGAACTCATTTCTCCTCACT 60.366 47.826 0.00 0.00 31.20 3.41
235 236 2.917971 CGACGAACTCATTTCTCCTCAC 59.082 50.000 0.00 0.00 31.20 3.51
236 237 2.557056 ACGACGAACTCATTTCTCCTCA 59.443 45.455 0.00 0.00 31.20 3.86
237 238 3.219052 ACGACGAACTCATTTCTCCTC 57.781 47.619 0.00 0.00 31.20 3.71
238 239 3.005472 TCAACGACGAACTCATTTCTCCT 59.995 43.478 0.00 0.00 31.20 3.69
239 240 3.314553 TCAACGACGAACTCATTTCTCC 58.685 45.455 0.00 0.00 31.20 3.71
240 241 4.143305 CCTTCAACGACGAACTCATTTCTC 60.143 45.833 0.00 0.00 31.20 2.87
241 242 3.741344 CCTTCAACGACGAACTCATTTCT 59.259 43.478 0.00 0.00 31.20 2.52
242 243 3.120649 CCCTTCAACGACGAACTCATTTC 60.121 47.826 0.00 0.00 0.00 2.17
243 244 2.806244 CCCTTCAACGACGAACTCATTT 59.194 45.455 0.00 0.00 0.00 2.32
244 245 2.413837 CCCTTCAACGACGAACTCATT 58.586 47.619 0.00 0.00 0.00 2.57
245 246 1.337823 CCCCTTCAACGACGAACTCAT 60.338 52.381 0.00 0.00 0.00 2.90
246 247 0.032952 CCCCTTCAACGACGAACTCA 59.967 55.000 0.00 0.00 0.00 3.41
247 248 0.316204 TCCCCTTCAACGACGAACTC 59.684 55.000 0.00 0.00 0.00 3.01
248 249 0.317479 CTCCCCTTCAACGACGAACT 59.683 55.000 0.00 0.00 0.00 3.01
249 250 0.669625 CCTCCCCTTCAACGACGAAC 60.670 60.000 0.00 0.00 0.00 3.95
250 251 0.828762 TCCTCCCCTTCAACGACGAA 60.829 55.000 0.00 0.00 0.00 3.85
251 252 1.228644 TCCTCCCCTTCAACGACGA 60.229 57.895 0.00 0.00 0.00 4.20
252 253 1.215647 CTCCTCCCCTTCAACGACG 59.784 63.158 0.00 0.00 0.00 5.12
253 254 0.974383 TTCTCCTCCCCTTCAACGAC 59.026 55.000 0.00 0.00 0.00 4.34
254 255 1.724545 TTTCTCCTCCCCTTCAACGA 58.275 50.000 0.00 0.00 0.00 3.85
255 256 2.749621 CAATTTCTCCTCCCCTTCAACG 59.250 50.000 0.00 0.00 0.00 4.10
256 257 3.092301 CCAATTTCTCCTCCCCTTCAAC 58.908 50.000 0.00 0.00 0.00 3.18
257 258 2.042979 CCCAATTTCTCCTCCCCTTCAA 59.957 50.000 0.00 0.00 0.00 2.69
258 259 1.640670 CCCAATTTCTCCTCCCCTTCA 59.359 52.381 0.00 0.00 0.00 3.02
259 260 1.686428 GCCCAATTTCTCCTCCCCTTC 60.686 57.143 0.00 0.00 0.00 3.46
260 261 0.336392 GCCCAATTTCTCCTCCCCTT 59.664 55.000 0.00 0.00 0.00 3.95
261 262 0.850883 TGCCCAATTTCTCCTCCCCT 60.851 55.000 0.00 0.00 0.00 4.79
262 263 0.684479 GTGCCCAATTTCTCCTCCCC 60.684 60.000 0.00 0.00 0.00 4.81
263 264 0.039618 TGTGCCCAATTTCTCCTCCC 59.960 55.000 0.00 0.00 0.00 4.30
264 265 1.546029 GTTGTGCCCAATTTCTCCTCC 59.454 52.381 0.00 0.00 32.11 4.30
265 266 1.546029 GGTTGTGCCCAATTTCTCCTC 59.454 52.381 0.00 0.00 32.11 3.71
266 267 1.632589 GGTTGTGCCCAATTTCTCCT 58.367 50.000 0.00 0.00 32.11 3.69
277 278 0.249447 GAACAGCAAAGGGTTGTGCC 60.249 55.000 0.00 0.00 40.35 5.01
278 279 0.594796 CGAACAGCAAAGGGTTGTGC 60.595 55.000 0.00 0.00 40.35 4.57
279 280 3.549997 CGAACAGCAAAGGGTTGTG 57.450 52.632 0.00 0.00 40.35 3.33
299 300 4.039973 TCCTGTATGTCCACGGAAATATCC 59.960 45.833 0.00 0.00 42.80 2.59
300 301 5.209818 TCCTGTATGTCCACGGAAATATC 57.790 43.478 0.00 0.00 28.30 1.63
301 302 4.503296 GCTCCTGTATGTCCACGGAAATAT 60.503 45.833 0.00 0.00 28.30 1.28
302 303 3.181469 GCTCCTGTATGTCCACGGAAATA 60.181 47.826 0.00 0.00 0.00 1.40
303 304 2.420129 GCTCCTGTATGTCCACGGAAAT 60.420 50.000 0.00 0.00 0.00 2.17
304 305 1.066430 GCTCCTGTATGTCCACGGAAA 60.066 52.381 0.00 0.00 0.00 3.13
305 306 0.535335 GCTCCTGTATGTCCACGGAA 59.465 55.000 0.00 0.00 0.00 4.30
306 307 0.324368 AGCTCCTGTATGTCCACGGA 60.324 55.000 0.00 0.00 0.00 4.69
307 308 0.179100 CAGCTCCTGTATGTCCACGG 60.179 60.000 0.00 0.00 0.00 4.94
308 309 0.817654 TCAGCTCCTGTATGTCCACG 59.182 55.000 0.00 0.00 32.61 4.94
309 310 2.234908 ACTTCAGCTCCTGTATGTCCAC 59.765 50.000 0.00 0.00 32.61 4.02
310 311 2.540383 ACTTCAGCTCCTGTATGTCCA 58.460 47.619 0.00 0.00 32.61 4.02
311 312 3.265791 CAACTTCAGCTCCTGTATGTCC 58.734 50.000 0.00 0.00 32.61 4.02
312 313 2.675348 GCAACTTCAGCTCCTGTATGTC 59.325 50.000 0.00 0.00 32.61 3.06
313 314 2.616510 GGCAACTTCAGCTCCTGTATGT 60.617 50.000 0.00 0.00 32.61 2.29
314 315 2.012673 GGCAACTTCAGCTCCTGTATG 58.987 52.381 0.00 0.00 32.61 2.39
315 316 1.406069 CGGCAACTTCAGCTCCTGTAT 60.406 52.381 0.00 0.00 32.61 2.29
316 317 0.037326 CGGCAACTTCAGCTCCTGTA 60.037 55.000 0.00 0.00 32.61 2.74
317 318 1.302033 CGGCAACTTCAGCTCCTGT 60.302 57.895 0.00 0.00 32.61 4.00
318 319 0.886490 AACGGCAACTTCAGCTCCTG 60.886 55.000 0.00 0.00 0.00 3.86
319 320 0.685097 TAACGGCAACTTCAGCTCCT 59.315 50.000 0.00 0.00 0.00 3.69
320 321 1.464997 CTTAACGGCAACTTCAGCTCC 59.535 52.381 0.00 0.00 0.00 4.70
321 322 1.464997 CCTTAACGGCAACTTCAGCTC 59.535 52.381 0.00 0.00 0.00 4.09
322 323 1.202770 ACCTTAACGGCAACTTCAGCT 60.203 47.619 0.00 0.00 35.61 4.24
323 324 1.069227 CACCTTAACGGCAACTTCAGC 60.069 52.381 0.00 0.00 35.61 4.26
324 325 2.218603 ACACCTTAACGGCAACTTCAG 58.781 47.619 0.00 0.00 35.61 3.02
325 326 2.215196 GACACCTTAACGGCAACTTCA 58.785 47.619 0.00 0.00 35.61 3.02
326 327 1.534163 GGACACCTTAACGGCAACTTC 59.466 52.381 0.00 0.00 35.61 3.01
327 328 1.142262 AGGACACCTTAACGGCAACTT 59.858 47.619 0.00 0.00 35.61 2.66
387 388 3.117054 ACCTCCTAAAGTAGAGCCCCTAG 60.117 52.174 0.00 0.00 0.00 3.02
399 400 1.409427 CTCCGGCAGTACCTCCTAAAG 59.591 57.143 0.00 0.00 35.61 1.85
414 415 2.943690 TCAGACTTTAGATCGTCTCCGG 59.056 50.000 0.00 0.00 38.37 5.14
473 474 5.200368 TGACATTCCCTTTTTCTTTCTGC 57.800 39.130 0.00 0.00 0.00 4.26
474 475 8.491331 TTTTTGACATTCCCTTTTTCTTTCTG 57.509 30.769 0.00 0.00 0.00 3.02
475 476 9.330063 GATTTTTGACATTCCCTTTTTCTTTCT 57.670 29.630 0.00 0.00 0.00 2.52
494 496 5.953183 TGGAAATCCGACATCAGATTTTTG 58.047 37.500 4.90 0.00 41.56 2.44
515 517 1.386533 GCCAGATCTGTCATGGTTGG 58.613 55.000 21.11 4.79 36.43 3.77
519 521 0.531532 GGACGCCAGATCTGTCATGG 60.532 60.000 21.11 7.74 37.15 3.66
527 529 0.318275 GTCATCTCGGACGCCAGATC 60.318 60.000 0.00 0.00 0.00 2.75
548 550 0.577269 GCCATACTCGCGACAACATC 59.423 55.000 3.71 0.00 0.00 3.06
566 571 6.155827 TGCCATGTTTACTAAAAGACATTGC 58.844 36.000 0.00 0.00 39.92 3.56
573 578 5.804979 CGGGATTTGCCATGTTTACTAAAAG 59.195 40.000 0.00 0.00 38.95 2.27
688 699 8.384607 TCTAGCTTTTCCTTCTCTTTTCTTTC 57.615 34.615 0.00 0.00 0.00 2.62
893 934 1.626356 ATAGGCACGCTGGATGTGGT 61.626 55.000 0.00 0.00 37.80 4.16
964 1005 1.369091 GATCAGCGTGGCCAAACGAT 61.369 55.000 19.07 10.38 46.49 3.73
1042 1083 3.508840 CGAGGAAACCATGGCCGC 61.509 66.667 13.04 6.08 0.00 6.53
1175 1216 0.392729 CGAGGAGGAGGTCGTGTACT 60.393 60.000 0.00 0.00 0.00 2.73
1205 1249 9.408069 GTACGATTTAGAATGGATTAGTCGATT 57.592 33.333 0.00 0.00 35.76 3.34
1209 1253 8.436200 GCATGTACGATTTAGAATGGATTAGTC 58.564 37.037 0.00 0.00 0.00 2.59
1210 1254 7.931407 TGCATGTACGATTTAGAATGGATTAGT 59.069 33.333 0.00 0.00 0.00 2.24
1211 1255 8.310406 TGCATGTACGATTTAGAATGGATTAG 57.690 34.615 0.00 0.00 0.00 1.73
1212 1256 8.720562 CATGCATGTACGATTTAGAATGGATTA 58.279 33.333 18.91 0.00 0.00 1.75
1214 1258 6.712095 ACATGCATGTACGATTTAGAATGGAT 59.288 34.615 30.50 0.00 39.68 3.41
1215 1259 6.054941 ACATGCATGTACGATTTAGAATGGA 58.945 36.000 30.50 0.00 39.68 3.41
1216 1260 6.304356 ACATGCATGTACGATTTAGAATGG 57.696 37.500 30.50 0.00 39.68 3.16
1217 1261 8.124823 AGAAACATGCATGTACGATTTAGAATG 58.875 33.333 31.55 1.75 40.80 2.67
1219 1263 7.609760 AGAAACATGCATGTACGATTTAGAA 57.390 32.000 31.55 0.00 40.80 2.10
1221 1265 6.688385 CCAAGAAACATGCATGTACGATTTAG 59.312 38.462 31.55 16.09 40.80 1.85
1639 1683 1.138047 CAACGCCGACGACTATCACC 61.138 60.000 0.00 0.00 43.93 4.02
1660 1704 0.323957 GAGCACCTAAAACCCCGACT 59.676 55.000 0.00 0.00 0.00 4.18
1663 1707 0.676782 CCAGAGCACCTAAAACCCCG 60.677 60.000 0.00 0.00 0.00 5.73
1702 1746 0.038526 ACACAACGTCCGGTCTGATC 60.039 55.000 0.00 0.00 0.00 2.92
1706 1750 1.299620 CGAACACAACGTCCGGTCT 60.300 57.895 0.00 0.00 0.00 3.85
1725 1770 3.118454 GACCACACCATGACCGCG 61.118 66.667 0.00 0.00 0.00 6.46
1728 1773 2.034879 CGCAGACCACACCATGACC 61.035 63.158 0.00 0.00 0.00 4.02
1745 1790 1.332375 ACACAACGAACAAACCATCCG 59.668 47.619 0.00 0.00 0.00 4.18
1753 1798 2.219903 CAGCGTATCACACAACGAACAA 59.780 45.455 0.00 0.00 41.55 2.83
1931 1976 5.392811 CGGGTGTTAACAAACTGTACCAAAA 60.393 40.000 10.51 0.00 29.17 2.44
1936 1981 5.482686 TTTCGGGTGTTAACAAACTGTAC 57.517 39.130 10.51 0.00 0.00 2.90
1972 2017 2.182842 CAGCCGGGCATCTAAGTGC 61.183 63.158 23.09 0.00 44.31 4.40
2000 2045 3.715834 AGCTGGAGATGCTCTTATTCCTT 59.284 43.478 0.00 0.00 35.67 3.36
2130 2194 7.458038 TTTGCCGAATTCAGTTCTTTTTAAC 57.542 32.000 6.22 0.00 34.56 2.01
2155 2228 2.542824 CGTTTTGTCCAGTTTGGCGAAT 60.543 45.455 0.00 0.00 37.47 3.34
2160 2233 2.446282 CGAACGTTTTGTCCAGTTTGG 58.554 47.619 0.46 0.00 39.43 3.28
2165 2238 1.504359 TAGCCGAACGTTTTGTCCAG 58.496 50.000 0.46 0.00 0.00 3.86
2329 2429 3.204827 CCGCGCCATCAAGAAGGG 61.205 66.667 0.00 0.00 0.00 3.95
2426 2538 1.469335 GGACAAGGGAGGTGACGTCA 61.469 60.000 15.76 15.76 0.00 4.35
2431 2543 2.606519 CCGGGACAAGGGAGGTGA 60.607 66.667 0.00 0.00 0.00 4.02
2515 2627 4.910722 CAAATGGGCGCGCGATGG 62.911 66.667 37.18 10.58 0.00 3.51
2590 2702 1.359848 CGCTACGTCAAGCCAAAGAT 58.640 50.000 4.77 0.00 39.43 2.40
2667 2836 4.735132 TCTTCGCCGCCGAGGTTG 62.735 66.667 0.00 0.00 45.35 3.77
2668 2837 3.771160 ATCTTCGCCGCCGAGGTT 61.771 61.111 0.00 0.00 45.35 3.50
2669 2838 4.514577 CATCTTCGCCGCCGAGGT 62.515 66.667 0.00 0.00 45.35 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.