>input_sequence_71617
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ATGGCAAACTGTAAGAAGTGGCTTCTGCTCGTTGTGGGCCTCGCGGCCATGGTTTCCTCGTCGGAGGCGTACGTCTTCTA
CGCCGGCGGCCGCGACGGCTGGGTCGTCGACCCCGCCGAGAGCTACAACCACTGGGCCGAGCGCAACCGGTTTCAGATCA
ACGACACCATCGGTAA---GTACACGACCTCCTCCTCGTCGATATTGTAATCGACTAATCCATTCTAAATCGTACATGCA
TGTTTCTTGGCTCGCAGTGTTTGCGCGCGGCGAAGGCGAGGGCGCGGACTCGGTGCTGCTGGTGACCGAGCCGGACTTCG
ACGCGTGCAACACGCGCAGCCCTGTCCGCCGGCTAGAGGACGCCGGTGGCCGCCCGGAGTTCCGGTTCGACCGGTCGGGT
GCCTTCTTCTTCATCAGCGGCGACGAGGACCGGTGCCAGAAGGGCAAGAAGTTGTACGTCGTCGTGATGGCGCCTCGGTC
CCAGGAGTGGGAGCTCGCACCGGCGCCCGGATCGCCGCCGCTCTGGGCCTCAGCGCCAGAGCACGCGGAGGCCCCGGACA
TGAGCCCTGGTGACGAGGGGATGTCGCGCAGCTCGCTGAAGGCGCCACCGCCGATGGCGAGCGCGGCACGGTTGGACTTG
GAGGTGATAGTCGTCGGCGTTGTAGTCGGGGTTTTAGGTGCTCTGGTGCTCTGA--------------------------
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>chr3D_1_TraesCS3D01G272600
AAAATACCAGTGGTGTGTCCTATGTCTGATGTCCCACTGATATGTCCTATGTCCTATGATATAGTCTGCTATGAACAAGT
TTGAACTATGTCATATGTTGTGTTGCATTTGAATTATGCCCTATGTTGTATGAACTATGTCTTATCTATATTGTGTTGCA
TGAACTCTGTTGTGTGATGCCGTATGATGTATTGATGATCTACATCCGATGTCCATACAAGATGCATAGAAATGAGTGAG
GAGAAATGAGTTCGTCGTTGAAGGGGAGGAGAAATTGGGCACAACCCTTTGCTGTTCGCGGATATTTCCGTGGACATACA
GGAGCTGAAGTTGCCGTTAAGGTGTCCTTATATTAAGACTTAAGAATTGGGACGCCCAAAACATTGTCTAGGGGCTCTAC
TTTAGGAGGTACTGCCGGAGACGATCTAAAGTCTGAATGAGCATAGAGAAAAAAGAGAATTAACCCACTATCCGCAGAAA
GAAAAA-GGGAATGTCAAAAATCTGATGTCGGATTTCCAACCATGACAGATCTGGCGTCCGAGATGACAG---ATGTTGT
CGCGAGTATGGCAATGTCTTT---TAGTAAACATGGCAAATCCCGGCAAAAAACTGAGCACGGAAAATCTTTGACATGCT
TGGTGAAAAAATTGCTATGCTTGCAACAATATATGC---CAAATTTGTAGCGAAATTCG---------------------
---------AAAGAAAAGAGAAGGAAAAGCTAGATTGTTCAGTCCCCACCGATTTCCCGCGGTCGCATCCGCGGGTACGG
CGAACCGAGCGCCGCAAGAAAATCCAGCTTGACAGCAACTGATTCAACGAAGCGGTGCGCTCCCGTTGGTTCCATGCGTA
GTCATAGATGAGGGTTTCTTGGGAGCCTACACCTGTTCCACCATAGGTCAGCAACCACATCCAGCGTGCCTATATGGGCA
TCCAATCCCGCCTCTCCTACCATATCTATCACTTCCCGGAGTTCATCGTTTGGCCACGCTGATCAATTGAGATCAAGACC
ATGGCAAACTGTAAGAAGTGGCTTCTGCTCGTTGTGGGCCTCGCGGCCATGGTTTCCTCGTCGGAGGCGTACGTCTTCTA
CGCCGGCGGCCGCGACGGCTGGGTCGTCGACCCCGCCGAGAGCTACAACCACTGGGCCGAGCGCAACCGGTTTCAGATCA
ACGACACCATCGGTAA---GTACACGACCTCCTCCTCGTCGATATTGTAATCGACTAATCCATTCTAAATCGTACATGCA
TGTTTCTTGGCTCGCAGTGTTTGCGCGCGGCGAAGGCGAGGGCGCGGACTCGGTGCTGCTGGTGACCGAGCCGGACTTCG
ACGCGTGCAACACGCGCAGCCCTGTCCGCCGGCTAGAGGACGCCGGTGGCCGCCCGGAGTTCCGGTTCGACCGGTCGGGT
GCCTTCTTCTTCATCAGCGGCGACGAGGACCGGTGCCAGAAGGGCAAGAAGTTGTACGTCGTCGTGATGGCGCCTCGGTC
CCAGGAGTGGGAGCTCGCACCGGCGCCCGGATCGCCGCCGCTCTGGGCCTCAGCGCCAGAGCACGCGGAGGCCCCGGACA
TGAGCCCTGGTGACGAGGGGATGTCGCGCAGCTCGCTGAAGGCGCCACCGCCGATGGCGAGCGCGGCACGGTTGGACTTG
GAGGTGATAGTCGTCGGCGTTGTAGTCGGGGTTTTAGGTGCTCTGGTGCTCTGAGATGCCGTACGGATCAGACC-GGACG
TTGTGTTCGCGCGGTCATGGTGTGGTCTGCGGATGGTTTGTTCGTTGTGTGATACGCTGTTGGTGTTAGTTGTTATATGT
AGTTCAAGGAGTTGAGATTCGTATACAGAATAAAATGATGTTTATATGTTACATGAACACGTGAATGGATACTGAAGCCG
TTTTCATGATTACTTAGTGATACCAGGACTTCTGAATCTTTTTCTTGAGATATGGTTTTGGTACAGTTTGTTAACACCCG
AAATTCTGACCCATCTGCACTTAGATGCCCGGCTGTTACGGTTCAAGGAATAAGAGCATCTCCAGCTGTTGGCC-CCCCG
GGCGGCGATTTTACG--CGCCCCCTGGGGGCGAGCCGGCGCTAAAATCGGCTTGGGAC---------------CCGCTCG
CCCCAGGGTCGCCC-CCAGACGCGGGTTTTTTAG-TT---AA-----AAAGAACTGAATTCGGCAAAATTCGCCAAACTG
GACAAAACGTTCGGCTAAA-TTCGGCAAACTTG-ACAT-AATATTCGAC-AT-GTTCGGCG--TT-A---CATAAGTTAT
T----A--AAAAAAA---CGAACTACAGGGCGAAGAAGTCGCTGAGCGTGGCGAAGTCGCCGAAGTCGCCGCCGTCCTC-
---GTCGTCG---TCGTTGGCGGCCTTCCCCTTCTTGATGGCGCGGCCGCCCCTGCTGGACCCCTGCCCGGCGGCTCCAT
GGCGGAC---CGGTGGCGGCGGCGCGTCGTC---GTC------GCTGTCGTCGAGGATGACGTCACCTCCCTTGTCCCGG
CCACGGCGCCGAGCTTCGAAGCGCTCGTAGGCGAGGCGCTCGCGCTCCAGCTCCGTGTGTGCCCAGCCATCGCGCGCCCA
TTTGAGGGCCGCCGCGTCGTCGAGCTCCTCCTCCTTGACGCCGCCGGCGAGCCCCGGCTCCATCTT--------------
----------------------------------------TGGCTTGACGTAGCGCGGAGGAGCCGAGGAGGGGGCGCGC
CTGCCGCCGCCC---TCGTTGATGACGATGTCGGCCAACCTCGGCGGCGAAGATGCCGG
>chr3B_329
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--------AGTTGCCGTTAAGGTGTCCTTATGTTAAGACTTAAGAATTGGGACGCCCAAAACATTGTTTAGGGGCTCTAT
TTTAGGAAGTAATGTCGGAGACGATCTAAAGTCTGAATGTGCAAAGAGAAAAAA-AGAATTAACCCACTATCCTTGGAAA
GAAAAACGGGAATGTTAAAAATCTGACGTCGGATTTTCAAGCATGACAAATCTGATGTTTGAGATGACAAATTATGTTCT
CGCGAGTATGACAATGTTTCTTACTAGTAAACATGGCAAATCCCGGCAAAAAACTGAGCATGTAAAATCT----------
-----------TTGCTATGCTTGCAACAATATATGCCATCAAATTTGTAGCGAAGTCCCTCGCAAAAAAAATTTTTGTAG
CGAAGTCACAAAGAAAAGAGAAGGAAAAGCTAGATTGTTCAGTCTCCACCGATTTCCCGCGGTCGCATCCTCGGGTACGG
CGAACCGAGCGCCGCAAGAAAATCCAGCTTGGCAGCAACTGATTCAACGAAGCGGTGCGCTCCCGTTGGTTCCATGCGTA
GTCATAGATGAGGGTTTCTTGGGAGCCTACACCTGTTCCACCATAGGTCAGCACCCACATCCAGCGTGCCTATATAGGCA
TCCAATCCCGCCTCTTCTACCATATCTATCACTTCCCGGAGTTCTTCGTTTGGCCACGCTGATCAATTGAGATCAAGACC
ATGGCAAACTGTAAGAAGTGGCTTCTGCTCGTTGTGGGCCTCACGGCCATGATTTCCTCGTCGGAGGCGTACGTCTTCTA
CGCCGGCGGCCGCGACGGCTGGGTCGTCGACCCCGCCGAGAGCTACAACCACTGGGCCGAGCGCAACCGGTTTCAGATCA
ACGACACCATCGGTAC---GTACACGACCGCCTCCTCGTCGATATTGTCATCATGAATCAAAGTGTAAATCGTACATGCA
TGTTTCTTGGCTCGCAGTGTTTGCGCGCGGCGAGGGCGAGGGCGCGGACTCGGTGCTGCTGGTGACCGAGCCGGACTTCG
ACGCGTGCAACACGCGTAGCCCTGTCCGCCGGCTAGAGGACGCCGGTGGTCGCCCGGAGTTCCGGTTCGACCGGTCGGGT
GCCTTCTTCTTCATCAGCGGCGACGAGGACCGGTGCCAGAAGGGCAAGAAGTTGTACGTCGTCGTGATGGCGCCTCGGTC
CCAGGAGTGGGAGCTCGCACCGGCGCCCGGATCGCCGCCGCTCTGGGCCTCGGCACCAGAGCACGCGGAGGCCCCGGACA
TGAGCCCTGGCAACGAGGGGATGTCGCGCAGCTCGCTGCAGGCGCCACCACCGACGGCGAGCGCGGCACGGTTGGACTTG
GACGTGATAGCCGTCGGCGTAGTCGTGGGGGTTTTAGGGGCTCTGGTGCTCTGAGATGGCGTACGAATCGGACT-AGACG
TTGTGTTCGTGCTGTCATGGTGTGGTCTGTGGATGGTCTGTTCGTTGTGTGATACGCTGTTGGTGTCAGTTGTTATATGT
AGTTCAAGGAGTTGAGATTCGTATACAGAATAAAATGATGTTTATATGTTACATGAACACGTGAATGGATACTGAAGCCG
TTTTCGTGATTACATAGTGATACCAGGACTTCTGAATCTTTTTCTTGAGATATGG-TTTGCTACAGTTAGTTAACACCCG
AAATTCTGACCCATCTTCACTTAGAAGCCCGGCTGTTACGGTTCGAGGACTAA---------------------------
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>chr3A_329
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--------AGTTGCCGTTAAGGTGTCCTTATATTAAGACTTAAGAATT-----GCCCAAAACATTGTTTAGGGGCTCTAT
TTTAGGAGGTACTGTCGGAGACGATCTAAAGTTTGAATGTGCAAAGAGAAAAAAGAAAATTAACCCACTATCATTGGAAA
GAAAAACGGGAATGTTAAAAATCTGGCGTCGGATTTTTAAGTATGACAAATCTGGCGTTTAAAATGACAAATTATGTTGT
CGCGAGTATGACAATTTTATT---TAGTAAACAAGGCAAATCCCGGCAAAAAACTGAGCACGGAAAATCTTTGCCATGCT
TGCTGAAAAAATTGCTATGCTTGCAATAATATATGCCATCAAATTTGTAGCGAAATTCA---------------------
---------AAAGCAAAGAGAAGGAAAAGCTAGATTGTTCAGTCTCCACCGATTTCCCGCGGTCGCATCCGCGCGTACGG
CGAACCGAGCGCCGCAAGAAAATCCAGCTTGACAGCAACTGATTCAACGAAGCGGTGCGCTCCCGTTGGTTCCATGCGTA
GTCATAGATGAGGGTTTCTTGGGAGCCTACACCTGTTCCACCATAGGTCAGCAGCCACATCCAGCGTGCCTATATAGGCA
TCCAATCCCGCCTCTCCTACCATATCTATCACTTCCCGGAGTTCTCTGTTT-----------------------------
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>chr3A_976
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-------------------------------------------------------ACACTGATCAACTGAGATCAACGCC
ATGGCGGACTGTAGGAAGTGGCTTCTGCTCGCTGTGGGCCTCACGGCCATGGTTTCCTCGTTGGGGGCGTACGTCTTCTA
CGCCGGCGGCCGCGACGGCTGGGTCGTCGACCCCGCCGAGAGCTACAACCACTGGGCCGAGCGCAACCGGTTTCAGATCA
ACGACACCATCGGTACGTGGTACAAGACCTCCTCCTCGTCGATATCCTCATCATGAATCGAAGTGTAAATCGTACATGCA
TGTTTCTTGGCTCGCAGTGTTTGCGCGCGGCGAGGGCGAGGGCGCGGACTCGGTGCTGCTGGTGACCGAGCCGGACTTCC
ACGCGTGCAACACGCGCAGCCCTGTCCGCCGGCTAGAGGACGCCGGTGGCCGCCCGGAGTTCCGGTTCGACCGGTCGGGT
GCCTTCTTCTTCATCAGCGGCGATGAGGACTGGTGCCAGAAGGGCAAGAAGCTGTACGTCGTCGTGATGGCGCCTCGGCC
CCAGGAGTGGGAGCTCGCACCGGCGCCCGGATCGCCTCCGCTCTGGGCCTCGGCGCCAGAGCACGCGGAAGCCCCGGACA
TGAGCCCTGGTGAGGAGGGGATGTCGCGCAGCTCGCAGAAGGCGCCACCGCCGACGGCGAGCGCGGCACGGTTGGACTTG
GACGTGATAGTCGTCGGCGTTGTCGTGGGGTTTTTAGGTGCTCTCGTGCTCTGAGATGGCATACGAATCGGACCGGGACG
TTGTGTTCGTGCTGTCATGGATGGTTATGTACTTA---TGTTCGTTGTGTGATACTC---------TAGTTGTTATACGT
AGTTCAAGGAGTTGAGATTCGTATACTGAATAAAATGATGTTTATATGTTACATGAACACGTGAATGGGTACTGAAGCCG
TTTTCATGATTACTTAGTGATACCAGGACTTCTGAATCTTTTTCTTGAGATATGG-TTTTTGATACAGTT----------
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>chr3A_2003
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----------------------------------------------GGGATTAGAGCATCTCCAGCCGTTGGCC-CCGCA
GGCGGCGCTTTTACG--TGCCCCCTGGGGGCGAGCCGGCGCTAAAATCGGCACGGGGGCGAGCGGGTTCCCAGCCGCTCG
CCCAAGGGTCGCCC-CCAGACGCGGATTTTTTT-------TA-----AAAGAACTGAATTCGGCAAAGTTCGGCAAATTG
GACAAAATGTTAGGCTAAA-TTCGGCAAAATTG-ACAT--ATATTCGAC-AT-GTTCGACG--TT-A---CATAAGTTAC
T----A--AAAAACC---C-AACTAAGGGGCGAAGAAGTCGCTGAGCGCGGCGAAGTCGCCGATGTCGCCGCCATCCTC-
---GTTGTCG---TCG---CCGGCCTTCTCCTTCTTGATGGTGCGGCCGCCCCTGCTGGACCCCTGCTCGGCGTCGCCAT
GGCGGAC---CGGTGGTGGCGGCGCGTCGTC---ATC------GCTGTCGTCGAGGACGACGACACCTTCCTCGTCCCGG
CCACGACGCCGAGCTTCGAAGAGCTCGTAGGCTAGGCGCTGGCGCTCCAGCTTCAGCTGGGCCCAGTCATCGCGCGCCCA
TTTGAGGGCCTCCGCGTCGTCGAGCTCCTCCTCCTTGACGCCGCCGGCGAGCCCGGGTTCC-------------------
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>chr3A_2003
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----------------------------------------------GGGATTAGAGCATCTCCAACCGTTGGCC-CCGTA
GGCGGCGATTTTACG--CGCCCCCTGGGGGCGAGCCGGCGCTAAAATCGGCACAGGGGCGGGCGGGTTCCCAGCCGCTCG
CCCAAGGATCGCCC-CCAGGCGCGGATTTTTTT-------AA-----AAAGAACTGAATTCGGCAAAGTTTGACAAATTG
GACAAAACGTTCGGCTAAA-TTCGGCAAACTTG-ACAT-A-TATTCGAC-AT-GTTCGACG--TT-A---CATAAGTTAT
TT--AA--AATAATC---C-AACTAAGGGGCGAAGAAGTCGCTGAGCGCGGCGAAGTCGCCGATGTCGCCGCCATCCTC-
---GTCGTCG---TCG---CCGACCTTCTCCTTCTTGATGGCGCGGCCGCCCCTGCTGGACCCCTGCCCGGCGTCGCCAT
GGTGGAC---CGGTGGTGGCGGCGCGTCGTC---ATC------GCTGTCGTCGAGGACGACGACGCCTCCCTCGTCCCGG
CCACGACGCCGAGCTTCGAAGAGCTCGTAGGCGAGGCGCTGGCGCTCCAGCTCCAGCTGGGCCCAGTCATCGCGCGCCCA
TTTGAGGGCCACCGCATCATCGAGCTCCTCCTCCTTGACGCCACCGGCGAGCCCGGGTTCC-------------------
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>chr3A_2003
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----------------------------------------------GGGATTAGAGCATCTCCAACCGTTGGCC-CCGTA
GGCGGCGATTTTACG--CGTCCCCTGGGGGCGAGCCGGCGCTAAAATCGGCACAGGGGCGGGCGGGTTCCCAGCCGCTCG
CCCAAGGATCGCCC-CCAGGCGCGGATTTTTTT-------AA-----AAAGAACTGAATTCGGCAAAGTTTGACAAATTG
GACAAAACGTTCGGCTAAA-TTCGGCAAACTTG-ACAT-A-TATTCGAC-AT-GTTCGACG--TT-A---CATAAGTTAT
TT--AA--AATAATC---C-AACTAAGGGGCGAAGAAGTCGCTGAGCGCGGCGAAGTCGCCGATGTCACCGCCATCCTC-
---GTCGTCG---TCG---CCGACCTTCTCCTTCTTGATGGCGCGGCCGCCCCTGCTGGACCCCTGCCCGGCCTCGCCAT
GGCGGAC---CGGTGGTGGCGGCGCGTCGTC---ATC------ACTGTCGTCGAGGACGACGACGCCTCCCTCGTCCCGG
CCACGACGCCGAGCTTCGAAGAGCTCGTAGGCGAGGCGCTGGCGCTCCAGCTCCAGCTGGGCCCAGTCATCGCGCGCCCA
TTTGAGGGCCGCCGCATCATCGAGCTCCTCCTCCTTGACGCCACCGGCGAGCCCGGGTTCC-------------------
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>chr7B_2003
GGAG----------------------------------------------------------------------------
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--------------------------------------------------TTAGAGCATCTCCAGCCGTTGGCC-CCCCC
GGCGGCGAATTTACG--CG-CCCCCGGGGGCGAGCCGGCGCTAAAATCGACGTGGGGGCGAGCGGGTTCCCAGCCGCTCG
CCCCAGGGTCGCCC-CTAGACACGGTTTTTTTT-------TA-----AAAACACAGAATTCGGCAAAGTTTGGCAAATTG
GACAAAACATTCGGCTAAAGTTCGACAAACTTG-ACAT-A-TATTCGAC-AT-GTTCGACG--TT-A---CATAAGTTAT
TT--AA--AAAAACC---C-AACTAAGGGGCGAAGAAGTCGCTGAGCGCGGCGAAGTCGCCGACGTCGCCGCCATCCTC-
---GTCGTCGGCGGCG---GCGGCGGCCTTCTCCTTCATGACGCGGCCGCCCCTGCTGGACCCCTGCCCGGCGTCGCCGT
AGCGGAC---CGGTGACGGCGGCGCGTCGTC---GTC------GCTGTCGTCGAGGACGACGACGCCTCCCTCGTCCCGG
CCACGGCGCCGAGCTTCGAACCGCTCGTAGGCGAGGCGCTGACGCTCCAGCTCCGTGCGTGCCCAGTCATCACGCGCCCA
TTTGAGGGCCGCCGCGTCGTCGAGCTCCTCCTACTTGACGCCGCCGGCGAGCCCGGGCTCC-------------------
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>chr5D_2007
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--------------------------------------------------TAAGAGCATCTCCAGCCGTTGGCA-CCCCA
GGCGGCGATTTTAAG--CGCCCCCTGGGGGCGAGCCGGCGCTAAAATCGGCGCGGGGGCG-------------CCGCTCG
CCACAGGGTCGCCCACTAGGCGCGGGTTTTTATTTTG-AAAA-----AAT----AAAATTCGGCAAA-------------
--------GTTCGGCTAAA-TTCGGCAAACTTAAACATAAATATTGGAC-AT-GTTCGGCG--TTTA---CATAAGTTAT
TA--AAAAAAAAAAA---C-AACTACGGGGTGAAGAAGTCGCTGAGCGCAGCGAAGTCGCCTATGTCGCCGCCGTCGTC-
---CTCGTCG---GCG---GCGGCGG---CCTCCTTGATGGCGCGGCCGCCCCTGCTGGACCCCTGCCTGGCGTCTCCAT
GACGGAC---CGGTGGCGGCGGCACGTCGTCGTTGTC------GCTGTCGTCGAGGACGACCACGCCTCCCTCGTCCCGA
CCCCGGCGCCGAGCTTCGAAGGCCTCATAGGCGAGGCACTGGCGCTGCAGCTCCGTATGCGCCCAGTCCTCGCGCGCCCA
CTTCAGAGCCGCCGCGTCGTCGAGCTCCTCCTCCTGGACGCCGGCGGCGAG-----------------------------
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>chr7A_2007
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--------------------------------------------------TAAGAGCACCTCCAGCCGTTGGCC-CACCC
AGGGGGGCGCGTAAAATCGCCGCCTGGGGGTGAGCCGGCGCTAAAATCGGCGTGGGTGCGAGCGGGTTCCCAGCCGCCGG
CCTTAGGGTCGCCA-CCAGACGCGGTTTTTTAAAG--------------------GAATTCGGCAGAGTTCGGCAAATTG
AACAAAACTTTCGGCTAAAGTTCGGCAAACTTG-ACAT-A-TATTCAACAAT-GTTCGACG--TT-A---CATAAGTTAT
TT--AA--AAAAATC---C-AACTAAGGGGCGAAGAAGTCGCTGAGAGCGGCGAAGTCGCCGACGTCGCCGCCATCCTC-
---GTCGTCG---TCG---TCCGCCTTCTCCTTCTTGACA---------CCTCTGCTGGACCCCTGCCCGGCGTCGCCCT
GACGGAC---CGGTGGCGGCGGCGCATCGTC---GTC------GCTGTCGTCGAGGACGATGATGCCTCCCTCGTCCCGG
CCACGGTGTCGAGCTTCGAACCGCTCATAGGCGAGGCACTGGCGCTCCAGCTCTGTGCGCA-CCAGTCTTCACGCGCCCA
CTTCAGGGCCGCCGCGTCGTCGAG---CTCCTCCTTGACGCTGTCGGCGAGTCCGGGCTCCGTCTTCACGA---------
------------------CGGCGATCCCCGGCTCCGTCTTTGGCTTGACGTAGCGCGGAGGAGCCGAGGAGGAGGCGCGC
CT---ACCGCCC---TCGTTGATGACGATGCCGGC------------------------
>chr1D_2007
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--------------------------------------------------TAAGAGCATCTCCAGCCGTTGGCC-CCCCA
GGCGGCGATTTTACG--CGCCCCCTGGGGGCGAGCCGGCGCTAAAATCGGCGCGGGGGCGAGCGGGTTCCCAGCCGCTCG
CCCCAGGGTCGCCC-CCAGACGCGTTTTTTGTATTTTAAAAA-----ATT----TGAATTCGGCAAAGTTCGGCTA----
----------------AAA-TTCGGCAAACTTG-ATATTCATATTAAAC-AT-GTTCGGCGTTTT-A---CATAAATTAT
TT--AA--AAAAAGC---A-ATCTAAGGGGCAAAGAAGCCGATCAGCGCGGCGAAGTCGCCGATGTCGCCGCCATCCTC-
---GTCGTCG---TCG---GTGGCCTTCTCCTTCTTGATGGTGCGGCCTCCCGTGCTGGACCCCTGCCCGGCGGCTCCAT
GGCGGACAGGCGGTGGCGGCGCGTCATCGTC---GTC------GCTGTCATCGAGGACAACGATGCCTCCCTCGTCTCGG
CCACGGCGACGAGCTTCGAACCGCGCGAGGGTGGCGCACTGGCGCTCCCTCTTCGCCTGTAGCCAGTCATCGTGCGACCA
TTTGAGGGCCGCCTCGTCGTCGAGTGCCTCCTCCTTGACGCCGCCGGCGAGCCCAGGCTCCGTCTT--------------
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>chr5A_2007
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--------------------------------------------------TAAGAACATCTCCAGCTGTTGGCC-CCTCA
GGCGCCGATTTTACG--TGCCCCCTGGGGGCGAGCCGGCGCTAAAATCGACGCGGGT-CGG----------------TCG
CCCCAGATGC--------------GTTTTTTTAATTAAACAA-----AAC----TGATTTCGGTAAAGTTCGGCTA----
----------------AAA-TTCGGCAAACTTG-ATATTCATATTCAAC-AT-GTTCAGCGTTTT-A---CATAAATTAT
TTTAAA--AAAAAGT---A-AACTACGGGTCGAAGAAGTTGATTAGCGCGGCAAAGTTGCCGACGTCTCCGCTGTCCTC-
---GTCATTG---TCG---GCGGCCTTCTCCTTCTTGATGGTGCGGCCGCCCCTGCTGGACCCCTGCCCGGCGTCTTCAT
GGCGGACAGGCGGTGGCGGCGCGCCGTCGTC---GTC------GTCGTCGCCGAGGACGACAATGTCTCCCTTTTCCCGG
CCATGGCGACGAGCTTCGAACTGCGCGAAGGCGGCGAGCTGGCGCTCCCTCTTCGTCTGCACCCAGTCGTCGCGCACCCA
TTTGAGGGCCGCTTCGTCGTCGAGCGCCTCCTCCTTGACG----------------------------------------
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>chr3D_2009
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----------------------------------------------------AGAGCATCTCCAGCCGTTGGCC-CCCCA
GGCGGCGATTTTATG--CGCCCCCTGGGGGCGAGCCGGCGCTAAAAGCGGCACGGGGGCGAGCGGGTTGCCAGCCGCTCG
CCCCAGGGTCGCCC-CCAGACGCGGGTTTTTTATTTT-GAAA-----AAAAAACTGAATTCGGCAAAGTTCGGCAAATTG
GACAAAATGTTCGGCTAAA-TTCGACAAACTTG-ACAT-AATATTCGAC-AT-GTTCGGCG--TT-A---CATAAGTTAT
TT--TA--AAAAATAAACCGAACTTCGGGGCGAAGAAGTCGCTGAGCGCAGCGAAGTCGCCGAATTCGCCGCCGTCCTC-
---GTCGTCG---GCG---GCGGCCTTCTCCTTCTTGATGGCACGGCCGCCCCTGCTGGACCCCTGCCCAGCGTCTCCAT
GGCGGAC---CGGTGGCGGCGGCGCGTCATC---GTC------GCTGTCGTCAAGGACGACGACGCCTCCCTCGTCCCGG
CCACGGCGCTAAGCTTCGAAGCGCTCGTAGGCGAGGTGCTGGCGCTCCAGCTCTGTGCGTGCCCAGTCATCGCGCACCCA
TTTGAGGGCCGCCGCGTCGTCGAGCTCCTCCTCCTTGACGCCGCCGGCGAACCTGGGCTTCGTCTTCACGACGGGGAGCC
CCAACTCCGTCTTGACGGCGGCGAGCCCCGACTTCGCCTTTGGCTTGACGTAGCGCGGAGGAGCCGAGGAGGGGGCGCGC
CTGCCGCCGCCC---TCGTTGATGACGACGCCGGC------------------------
>chr3D_2009
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----------------------------------------------------AGAGCATCTCTAGCCGTTGGCC-CCCCA
GGCGGCGATTTTA----TGCGCCCCCTGGGCGAGCCGACGCTAAAATCGGTGCGGGGCCGAGCGGGTTCCCAGCCGCTCG
CCCCAGGGTCGCCC-CCAGACGCGGAGTTTTAGTTGTG---------AAAAAAGTGAATTCAGCAAAGTTTGGCAAATTG
GACAAAATGTTCGGTTAAA-TTCGGCAAACTTG-ACAT-AATATTCGGC-ACGGTTCGGCG--TT-A---CATAAGTTAT
TT--TG--AAAAAAA---C-AACTACGGGGAGAAGAAGTAGCTGAGCGCGGCGAAGTCGCCGACGTCGCCGCCGTCCTC-
---GTCGTCGGCAGCG---GCAGCCTTCTCCTTCTTGATGGCGCGGCCGCCT-TGCTGGATCCCTGCCTGGCGTCTCCAT
GGCGGAC---CGGTGGCGGCGGCGCATCGTC---GTC------GCTGTCGTCGAGGACGACACCGCCTCCCTCGTCCCGG
CCACGGCGCCGAGCTTCGAAGCACTCGTAGGCGAGGCGCTAGCGCTCCAGCTCCAGCGTGGCCCAGTCATCGCGCGCCCA
TTTGAGGGCCACCGCGTCGTCGATCTCCTCCTCCTTGACGCCGCCGGTGAGCCCGGGCTCAGTCTTCATGACGGGGAGCC
CCGGCTCCGTCTTGACGGCGGCGAGCCCCGGCTTCGTCTTTGGCTTGACGTAGCGCGGAGGAGCCGAGGAGGGGGCGCGC
CT---GCCGCCC---TCGTTGATGACGATGTCG--------------------------
>chr1A_2009
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----------------------------------------------------AGAGCATCTTCAGTCATTGGCCCCCT-A
GGCGGCTATTTTATG--CGCGCCCTGGGGGCGAGCCGGCGCTAAAATCGGCGCGGGGGCGAGCGGGT------CCGCTCG
CCCTATGGTCGCCC-CCAGACGCGGGTTTTTTATTTT-GAAA-----AAA----TGAATTCGGCAAAGTTTGGTAAATTG
CACAAAATGTTCGGCTAAA-TTCGGCAAACTTG-ACAT-AATATTTGAC-AT-GTTTGACG--TT-ATCACATAAGTTAT
TA--AA--AAAAGAG---C-AACTACGGGGCGAAGAAGTCGCTGAGCGCGGCGAAGTCGCCGCCGTCCT---CCTCGTT-
---GTTGTCG---GCG---TCGGCCTTCTCCTTCTTGATGGCGCGGCCGCCCCTGTTGGATCCCTGCCCGGGGTCTCCAT
GGCGGAC---CGGTGGCGGCGACGCGTCGTC---ATC------GCTATCGTCGAGGACGACGATGCCTCCCTCGTTCCGG
CCACGGCACCGAGCTTCGAAGCGCTCGTAGGCGAGGCGCTGGCGCTCCAGCTCTAGCTGCGCCCACTCATCGCGCACCCA
TTTGAGGGCCGCCGCGTCGTCGAGCTGCTCCTCCTTGACGCCGCCGGCGAGCCCCGGCTTCGTCTT--------------
----------------------------------------TGGCTTGACGTAGTGTGGAGGAGCCGAGGAGGGGGCGCGC
CT---GCCGCCC---TCGTTGATGACGATGCCGGC------------------------
>chr7D_2009
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----------------------------------------------------AGAGCATCTCCAGCCGTTGGCCCCC--A
GGCGGCGATTTTACG--CG-CCCCTGGTGGCGAGCCGGCGCTAAAATCGGCGCGGGGGCGAGCGGG--------CGCTCG
CCCCAGGGTCGCCC-CCAGACGTTGTTTTTTTTTTGAAAAAA-----AAC----TGAATTCGGCAAAGTTCGGCAAATTG
GACAAAACGTTCGGCTAAA-TTCGGCAA-CTTG-ACAT--ATATTTGAC-AT-GTTCGACG--TT-A---CATAAGTCAT
TA--GA--AAAAACC---C-AACTAAGGGGCGAAGAAG-CGCTAAGCGCGGCGAAGTCGCCGACGTCACCGCCATCCTC-
---G-CGTCG---GCG---GCGGCCTTCTCCTTCTTGATGGCGCGGCTGCCCCTGCTGGACCCTTGCCCGGCGTCGCCAT
GGCGGAC---CAGTGGCGGCGGCGCGTCGTC---ATC------GCTGTCATCGAGGACGACGACGCCTCCCTCGTCCCGG
CCACGGCGCCGAGCTTCGAAGCGGTCGTAGGCGAGGCGCTGGCGCTCCAGCTCCGTGCGTGCCCAGTCATCGCGCGCCCA
TTTGAGGGTTGCCGCGTCATCGAGCTCCTCCTCCTTGACGCCGCCGGCGAGCCCAGGCTCCGTCTT--------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr4D_2009
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----------------------------------------------------AGAGCATCTCCAGCCGTTGGAGCCCC-A
TGCG-CGATTTTA----CGCGCCCCTGGGGCGAGCCGGCGCTAAAATCGGCGCGGGG-CGAGCGGGTTTCCAGCCGCTCG
CTTCAGGGTTGCCC-CCAGACGCGGGTTTTTTT-------ATTTTGGAAATAGCTGAATTCGGCAAAGTTCGGCAAATTG
GACAAAACGTTCGGCTAAA-TTCGGCAAATTTG-ATAT-AATATTCGAC-AT-GTTCGGCG--TT-A---TATAAATTAT
TT---A--AAAAAAC---C-AACTATGGGGCGAAGAAGTCGCTGAGCGCGGCGAAGTCGCCGCCGTCCT---CGTCGGCG
GCGG-CGGCG---GCG---GCGGCCTTCTCCTTCTTGATGGCGCGGCCGCCCCTGCTGGACCCCTGCCCGGCGTCTCCAT
GGCGGAC---CGGTGGCGGCGGCGCGTTGTC---GTC------GCTGTCGTCGAGGACGATGACGCCTCCCTCGTCCCGG
CCACGGCGCCAAGCTTCGAAGCGCTCGTAGGCGAGGCGTTGGCGCTCCAGCTCCGTGCGTGCCCAGTCATCGCGCACCCA
TTTGAGGGCCGCCGCGTCGTCGAGCTCCTCCTCCTGGACGCCGCCGGCGAGCCCGGGCTCCGTCTTCACGACGGGGAGCC
CCGGCTCCGTCTTGACGGCGGCGAGCCCCGGCTCCGTCTTTGGCTTGACGTAGCGCGGAGGAGCCGAGGAGGGGGCGCGC
CT---GCCGCCCCCCTCGTTGATGACGATGTCGGC------------------------
>chr5D_2009
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----------------------------------------------------AGAGCATCTCCAGCCGTTGGCCCCCCCA
GGCGGCGATTTTATG--CGCCCCCTGGGGGCGAGCCGACGCTAAAATCGGCGCGGGGGC------G--------CGCTCG
CCCCAGGGTCGCCC-CCAGACGCGTTTTTTTTATTTT---AA-----AAAAATTTGAATTCGGCAAAGTTTGGCTA----
----------------AAA-TTCGGCAAATTTG-ATATTCACATTAAAC-A--GTTCGGCGTTTT-A---CATAAATTAT
TT--AA--AAAAAGC---A-ATCTAAGGGACGAAGAAGCCGATTAGCCCGGCGAAGTCGCCGACGTCGCCGTCCTCCTC-
---CTCATCG---TCG---TCGGCCTTCTCCTTCTTGATGGCGCGACCGCCCCTGCTGGACCCCTGCCCGGCGACTCCAT
GGCGGAC---AGGCGGTGGCGGCGCGTCGTC---GTCATCGTCGCTGTCGTCGAGGACGACGATGCCTCCCTCGTCCCGG
CCATGATGATGAGCTTCAAACCGCGCAAGGGCGGCGCACTGGCGCTCCCTCTCAGTCTTCAGCCAGTCGTCGCGCGCCCA
TTTGAGCGCTGCTTCGTCGTCAAGCGGCTCCTCCTTGATGCCGCCGGCGAGCCCGGGCTCCGTCTT--------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-----------------------------------------------------------S-----------S
--------------S------------------------S---S-----------------------------SSS----
---------------S----------S---------S---S-------S---------SS---------S----------
----------S------S-------------------------------------------------------S------
--S-------------------------------------------------------S---------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S---------------------S----
--------------------------------------------S-----------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
---------------S--------------------------------S---SSSS-SSSS-S-S---------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
------------------------------------------------------S-------------------------
--S--------------------S--S-------------------------------S------S---S----------
---------S--S----------------S-------S------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S----S-------------------
----------------S--------S------------------S----------------------------------S
---------------------------------------------------S----S-----------------------
---------------------------------S---------------------------------S----S----S--
--------------------------------------------------------------------------------
--------------------------S---------------------S-------------------------------
----------------SSS---------S---------------------------------------------------
---------------------------------------------------------S----S-----------------
----------------------------------------S-------------------------S-------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSS
>forward_266
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------TGAGTTCGTCGTTGAAGGGG------------------------------------------------------
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>reverse_1746
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-----------------------------------------------------------------GATCAGACCGGACGT
TGTGT---------------------------------------------------------------------------
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