Multiple sequence alignment - TraesCS3D01G264000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3D01G264000
chr3D
100.000
3954
0
0
1
3954
365908094
365904141
0.000000e+00
7302.0
1
TraesCS3D01G264000
chr3D
82.245
383
59
9
3494
3869
113670560
113670940
4.930000e-84
322.0
2
TraesCS3D01G264000
chr3A
93.344
3095
141
33
75
3124
487856174
487853100
0.000000e+00
4514.0
3
TraesCS3D01G264000
chr3A
91.498
494
35
5
3465
3954
487850419
487849929
0.000000e+00
673.0
4
TraesCS3D01G264000
chr3A
95.238
63
2
1
1
62
487856294
487856232
9.040000e-17
99.0
5
TraesCS3D01G264000
chr3A
91.667
48
4
0
3505
3552
573676422
573676469
2.550000e-07
67.6
6
TraesCS3D01G264000
chr3B
92.635
1901
86
26
682
2558
476946613
476944743
0.000000e+00
2686.0
7
TraesCS3D01G264000
chr3B
95.098
714
21
11
2600
3308
476944741
476944037
0.000000e+00
1112.0
8
TraesCS3D01G264000
chr3B
88.752
649
48
14
3326
3954
476943993
476943350
0.000000e+00
771.0
9
TraesCS3D01G264000
chr3B
86.901
313
27
8
383
690
476947099
476946796
4.890000e-89
339.0
10
TraesCS3D01G264000
chr1A
84.597
857
122
9
1122
1970
550972057
550971203
0.000000e+00
843.0
11
TraesCS3D01G264000
chr1B
83.897
857
128
9
1122
1970
629942592
629941738
0.000000e+00
809.0
12
TraesCS3D01G264000
chr1D
84.459
785
112
8
1194
1970
458486190
458485408
0.000000e+00
765.0
13
TraesCS3D01G264000
chr4B
81.319
364
59
6
3513
3869
58236711
58237072
1.800000e-73
287.0
14
TraesCS3D01G264000
chr5A
76.887
212
43
6
3535
3742
573596962
573597171
8.980000e-22
115.0
15
TraesCS3D01G264000
chr2D
81.148
122
20
3
3569
3688
73016256
73016376
1.170000e-15
95.3
16
TraesCS3D01G264000
chr4D
93.220
59
4
0
3505
3563
291724548
291724490
1.960000e-13
87.9
17
TraesCS3D01G264000
chr6A
91.228
57
5
0
3496
3552
399877143
399877199
1.180000e-10
78.7
18
TraesCS3D01G264000
chr6D
84.722
72
11
0
3496
3567
276134288
276134217
5.480000e-09
73.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3D01G264000
chr3D
365904141
365908094
3953
True
7302
7302
100.0000
1
3954
1
chr3D.!!$R1
3953
1
TraesCS3D01G264000
chr3A
487849929
487856294
6365
True
1762
4514
93.3600
1
3954
3
chr3A.!!$R1
3953
2
TraesCS3D01G264000
chr3B
476943350
476947099
3749
True
1227
2686
90.8465
383
3954
4
chr3B.!!$R1
3571
3
TraesCS3D01G264000
chr1A
550971203
550972057
854
True
843
843
84.5970
1122
1970
1
chr1A.!!$R1
848
4
TraesCS3D01G264000
chr1B
629941738
629942592
854
True
809
809
83.8970
1122
1970
1
chr1B.!!$R1
848
5
TraesCS3D01G264000
chr1D
458485408
458486190
782
True
765
765
84.4590
1194
1970
1
chr1D.!!$R1
776
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
709
968
0.033781
TCACCCAAGCAAAAGCATGC
59.966
50.0
10.51
10.51
46.78
4.06
F
1703
1983
0.737219
GCACTCTTGATGGTCATGGC
59.263
55.0
0.00
0.00
0.00
4.40
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2598
2895
1.140816
GAAGCCACTCAACAGACGAC
58.859
55.0
0.00
0.00
0.0
4.34
R
3475
3825
0.031857
TGTTTTCATTGCGCAGGTGG
59.968
50.0
20.29
8.72
0.0
4.61
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
42
44
0.729140
GCAGAACGCCGGTTGATTTG
60.729
55.000
1.90
0.00
36.24
2.32
53
55
2.481795
CGGTTGATTTGATTCATGGGGC
60.482
50.000
0.00
0.00
0.00
5.80
62
64
3.624777
TGATTCATGGGGCTCTTTCTTC
58.375
45.455
0.00
0.00
0.00
2.87
64
66
2.496899
TCATGGGGCTCTTTCTTCAC
57.503
50.000
0.00
0.00
0.00
3.18
65
67
1.988107
TCATGGGGCTCTTTCTTCACT
59.012
47.619
0.00
0.00
0.00
3.41
66
68
2.089980
CATGGGGCTCTTTCTTCACTG
58.910
52.381
0.00
0.00
0.00
3.66
67
69
0.250901
TGGGGCTCTTTCTTCACTGC
60.251
55.000
0.00
0.00
0.00
4.40
68
70
0.037447
GGGGCTCTTTCTTCACTGCT
59.963
55.000
0.00
0.00
0.00
4.24
69
71
1.546548
GGGGCTCTTTCTTCACTGCTT
60.547
52.381
0.00
0.00
0.00
3.91
70
72
2.234143
GGGCTCTTTCTTCACTGCTTT
58.766
47.619
0.00
0.00
0.00
3.51
98
145
4.718940
AAACAATTGGGATGTCCGATTC
57.281
40.909
10.83
0.00
44.45
2.52
100
147
1.603802
CAATTGGGATGTCCGATTCGG
59.396
52.381
19.16
19.16
44.45
4.30
129
176
4.707030
TGATTTTGCTTGCACCATAGAG
57.293
40.909
0.00
0.00
0.00
2.43
189
238
2.414594
GCAATCCCAGCGAATGCC
59.585
61.111
0.00
0.00
40.91
4.40
190
239
3.122850
CAATCCCAGCGAATGCCC
58.877
61.111
0.00
0.00
44.31
5.36
191
240
1.454479
CAATCCCAGCGAATGCCCT
60.454
57.895
0.00
0.00
44.31
5.19
192
241
1.039233
CAATCCCAGCGAATGCCCTT
61.039
55.000
0.00
0.00
44.31
3.95
193
242
0.550914
AATCCCAGCGAATGCCCTTA
59.449
50.000
0.00
0.00
44.31
2.69
197
246
0.109342
CCAGCGAATGCCCTTAGGAT
59.891
55.000
0.00
0.00
44.31
3.24
231
280
5.121611
CCAATTGAACGCATGACAGTTACTA
59.878
40.000
7.12
0.00
0.00
1.82
238
287
2.545526
GCATGACAGTTACTATGCGCAT
59.454
45.455
28.23
28.23
36.89
4.73
244
293
2.216488
CAGTTACTATGCGCATCGTGAC
59.784
50.000
30.48
30.48
0.00
3.67
278
336
6.266558
TGCCAGTTTTCTACATGGTAATTGTT
59.733
34.615
0.00
0.00
35.17
2.83
282
340
7.538678
CAGTTTTCTACATGGTAATTGTTGCTC
59.461
37.037
0.00
0.00
0.00
4.26
305
363
7.914427
TCTAGAGCATAACAAATCCCTTAGA
57.086
36.000
0.00
0.00
0.00
2.10
314
372
6.780457
AACAAATCCCTTAGAACATCATGG
57.220
37.500
0.00
0.00
0.00
3.66
332
390
9.499479
ACATCATGGCAATTTTATTTGTTTACA
57.501
25.926
0.00
0.00
0.00
2.41
340
398
7.745594
GCAATTTTATTTGTTTACACATGGCAG
59.254
33.333
0.00
0.00
31.06
4.85
344
402
4.314740
TTTGTTTACACATGGCAGTTCC
57.685
40.909
0.00
0.00
31.06
3.62
360
420
1.852157
TTCCAGGCTCGCTGGGAAAT
61.852
55.000
7.54
0.00
42.03
2.17
483
545
9.001542
TGCAATGAATTTCTTAGGAAAAATTGG
57.998
29.630
21.72
12.14
43.51
3.16
646
714
6.716173
TGTCATGACATGATCCTTTTCTTGAA
59.284
34.615
24.56
0.00
42.04
2.69
702
961
4.407296
ACCTAAATGTTTCACCCAAGCAAA
59.593
37.500
0.00
0.00
0.00
3.68
708
967
2.529780
TTCACCCAAGCAAAAGCATG
57.470
45.000
0.00
0.00
0.00
4.06
709
968
0.033781
TCACCCAAGCAAAAGCATGC
59.966
50.000
10.51
10.51
46.78
4.06
734
993
4.039042
GCATTTCCTGCCCCATGT
57.961
55.556
0.00
0.00
45.66
3.21
735
994
1.518774
GCATTTCCTGCCCCATGTG
59.481
57.895
0.00
0.00
45.66
3.21
800
1059
2.983791
CCCATGGGGCAGCAAAAG
59.016
61.111
24.53
0.00
35.35
2.27
812
1081
2.684881
GCAGCAAAAGAAGCTATAGGCA
59.315
45.455
1.04
0.00
41.14
4.75
813
1082
3.243002
GCAGCAAAAGAAGCTATAGGCAG
60.243
47.826
1.04
0.00
41.14
4.85
814
1083
3.314635
CAGCAAAAGAAGCTATAGGCAGG
59.685
47.826
1.04
0.00
41.14
4.85
941
1212
2.488153
GCACAAAGTCCACTAATCCACC
59.512
50.000
0.00
0.00
0.00
4.61
1646
1926
3.474570
GGCTCATGGGACCGCTCT
61.475
66.667
0.00
0.00
0.00
4.09
1703
1983
0.737219
GCACTCTTGATGGTCATGGC
59.263
55.000
0.00
0.00
0.00
4.40
2000
2283
8.102484
ACCTATTACCACCATCACTTATTTCT
57.898
34.615
0.00
0.00
0.00
2.52
2161
2446
9.221933
ACGTGTTAGTTTTATGTTGGAATGATA
57.778
29.630
0.00
0.00
0.00
2.15
2192
2479
6.493458
AGCATAGGTTTTGAACATTACCAGTT
59.507
34.615
0.00
0.00
33.02
3.16
2194
2481
8.466798
GCATAGGTTTTGAACATTACCAGTTAT
58.533
33.333
0.00
0.00
33.02
1.89
2217
2504
4.302455
TGGTTTTGGTTCAACGCATTATG
58.698
39.130
0.00
0.00
0.00
1.90
2297
2584
6.146021
GGTTGACTTAAGTTGCCAAATTGATG
59.854
38.462
10.02
0.00
0.00
3.07
2339
2626
8.359642
AGCAGAAAAATAAATAGCAAGTTCACA
58.640
29.630
0.00
0.00
0.00
3.58
2352
2639
5.185056
AGCAAGTTCACAACCAGTACTTTTT
59.815
36.000
0.00
0.00
28.83
1.94
2458
2746
1.303155
GCCTCCTGCCCATCTATGC
60.303
63.158
0.00
0.00
0.00
3.14
2469
2757
2.487805
CCCATCTATGCTAAGGCTGCAA
60.488
50.000
3.45
0.00
44.01
4.08
2499
2789
4.523173
TGTCAAGCGAGGTATATAGGAAGG
59.477
45.833
0.00
0.00
0.00
3.46
2501
2791
5.243283
GTCAAGCGAGGTATATAGGAAGGAA
59.757
44.000
0.00
0.00
0.00
3.36
2502
2792
5.477291
TCAAGCGAGGTATATAGGAAGGAAG
59.523
44.000
0.00
0.00
0.00
3.46
2503
2793
3.764972
AGCGAGGTATATAGGAAGGAAGC
59.235
47.826
0.00
0.00
0.00
3.86
2504
2794
3.510360
GCGAGGTATATAGGAAGGAAGCA
59.490
47.826
0.00
0.00
0.00
3.91
2507
2797
5.336055
CGAGGTATATAGGAAGGAAGCACAG
60.336
48.000
0.00
0.00
0.00
3.66
2629
2926
6.719370
TGTTGAGTGGCTTCTTAATATGGTTT
59.281
34.615
0.00
0.00
0.00
3.27
2737
3034
5.073428
ACTATCCGCATCTACAAGATCTCA
58.927
41.667
0.00
0.00
31.32
3.27
2960
3258
9.730705
AATATATTGTCTCGTGAATCATGGAAT
57.269
29.630
2.27
0.26
0.00
3.01
3141
3444
6.295180
GCTAGGTTCTAGTACCACTCAAAAGT
60.295
42.308
19.53
0.00
40.82
2.66
3160
3463
2.044135
GTTTTTGCTTAGCTGTGCGTC
58.956
47.619
5.60
0.00
0.00
5.19
3174
3477
1.226128
GCGTCAAAAGGAGCGCATC
60.226
57.895
11.47
4.01
42.02
3.91
3308
3616
1.261619
GTCTAAGAATTCATGCCGGCG
59.738
52.381
23.90
8.74
0.00
6.46
3356
3690
1.068753
CAGTCCTAGCTCATGCCGG
59.931
63.158
0.00
0.00
40.80
6.13
3368
3702
2.164219
CTCATGCCGGCTTACAAAATGT
59.836
45.455
29.70
0.00
0.00
2.71
3370
3704
2.430546
TGCCGGCTTACAAAATGTTG
57.569
45.000
29.70
0.00
40.84
3.33
3409
3743
4.024218
GCTCAATCATTTAGCTCGAGCATT
60.024
41.667
36.87
23.43
42.99
3.56
3410
3744
5.413969
TCAATCATTTAGCTCGAGCATTG
57.586
39.130
36.87
31.25
45.16
2.82
3413
3747
1.945394
CATTTAGCTCGAGCATTGCCT
59.055
47.619
36.87
19.08
45.16
4.75
3414
3748
2.113860
TTTAGCTCGAGCATTGCCTT
57.886
45.000
36.87
18.34
45.16
4.35
3439
3773
3.881220
TGTTTCTTCTCGAACCAAACCT
58.119
40.909
0.00
0.00
0.00
3.50
3446
3780
3.991367
TCTCGAACCAAACCTTTCTCTC
58.009
45.455
0.00
0.00
0.00
3.20
3447
3781
3.386726
TCTCGAACCAAACCTTTCTCTCA
59.613
43.478
0.00
0.00
0.00
3.27
3448
3782
3.463944
TCGAACCAAACCTTTCTCTCAC
58.536
45.455
0.00
0.00
0.00
3.51
3449
3783
2.548480
CGAACCAAACCTTTCTCTCACC
59.452
50.000
0.00
0.00
0.00
4.02
3471
3821
1.746615
CTCAACTCCACCGCCATGG
60.747
63.158
7.63
7.63
46.41
3.66
3481
6259
2.124983
CGCCATGGTCTCCACCTG
60.125
66.667
14.67
0.00
44.17
4.00
3569
6347
0.974383
TCCTCCTTTTGACGGTCTCC
59.026
55.000
9.88
0.00
0.00
3.71
3571
6349
1.066787
CCTCCTTTTGACGGTCTCCTC
60.067
57.143
9.88
0.00
0.00
3.71
3578
6356
0.331616
TGACGGTCTCCTCCATCTCA
59.668
55.000
9.88
0.00
0.00
3.27
3588
6366
3.176411
TCCTCCATCTCAAGCTTCTTCA
58.824
45.455
0.00
0.00
0.00
3.02
3596
6374
6.294899
CCATCTCAAGCTTCTTCATTTGGAAA
60.295
38.462
0.00
0.00
34.44
3.13
3598
6376
7.294017
TCTCAAGCTTCTTCATTTGGAAATT
57.706
32.000
0.00
0.00
34.44
1.82
3623
6401
4.579869
TGTAGACCTTCATTTGCTTCTCC
58.420
43.478
0.00
0.00
0.00
3.71
3649
6429
1.524008
TTGCGCTTCCTCTCGTCTCA
61.524
55.000
9.73
0.00
0.00
3.27
3697
6478
2.472816
CAAGTTTGTTGCAAGGCGAAT
58.527
42.857
0.00
0.00
0.00
3.34
3774
6556
1.929836
CTCCTTCATGCTCAACTACGC
59.070
52.381
0.00
0.00
0.00
4.42
3802
6584
2.823152
GCCCTCCATTCTTCTTTTGGGT
60.823
50.000
0.00
0.00
36.00
4.51
3814
6596
2.496871
TCTTTTGGGTGGCATATTGCTG
59.503
45.455
0.00
0.00
44.28
4.41
3919
6701
1.746171
CGAGACATGGGAGTCGGAGTA
60.746
57.143
0.00
0.00
43.24
2.59
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
42
44
3.379688
GTGAAGAAAGAGCCCCATGAATC
59.620
47.826
0.00
0.00
0.00
2.52
69
71
6.037610
CGGACATCCCAATTGTTTTTGAAAAA
59.962
34.615
4.43
0.00
34.14
1.94
70
72
5.525378
CGGACATCCCAATTGTTTTTGAAAA
59.475
36.000
4.43
0.00
34.14
2.29
73
120
3.891977
TCGGACATCCCAATTGTTTTTGA
59.108
39.130
4.43
0.00
34.14
2.69
98
145
3.688272
CAAGCAAAATCATGTAGAGCCG
58.312
45.455
0.00
0.00
0.00
5.52
100
147
3.855950
GTGCAAGCAAAATCATGTAGAGC
59.144
43.478
0.00
0.00
0.00
4.09
150
198
3.058501
CCTAAAAATGACGTTCGCTGGTT
60.059
43.478
0.00
0.00
0.00
3.67
152
200
2.727916
GCCTAAAAATGACGTTCGCTGG
60.728
50.000
0.00
0.00
0.00
4.85
189
238
4.778213
TTGGGATCTGACAATCCTAAGG
57.222
45.455
13.15
0.00
44.06
2.69
190
239
6.359804
TCAATTGGGATCTGACAATCCTAAG
58.640
40.000
5.42
7.79
45.84
2.18
191
240
6.325993
TCAATTGGGATCTGACAATCCTAA
57.674
37.500
5.42
13.68
46.43
2.69
192
241
5.974156
TCAATTGGGATCTGACAATCCTA
57.026
39.130
5.42
7.31
44.06
2.94
193
242
4.868172
TCAATTGGGATCTGACAATCCT
57.132
40.909
5.42
0.00
44.06
3.24
197
246
2.487762
GCGTTCAATTGGGATCTGACAA
59.512
45.455
5.42
0.00
0.00
3.18
231
280
0.726827
AAAATCGTCACGATGCGCAT
59.273
45.000
25.66
25.66
46.30
4.73
238
287
1.798223
CTGGCAGAAAAATCGTCACGA
59.202
47.619
9.42
0.28
41.13
4.35
244
293
5.757886
TGTAGAAAACTGGCAGAAAAATCG
58.242
37.500
23.66
0.00
0.00
3.34
247
296
5.362430
ACCATGTAGAAAACTGGCAGAAAAA
59.638
36.000
23.66
0.00
32.60
1.94
282
340
7.987458
TGTTCTAAGGGATTTGTTATGCTCTAG
59.013
37.037
0.00
0.00
0.00
2.43
314
372
7.579726
TGCCATGTGTAAACAAATAAAATTGC
58.420
30.769
0.00
0.00
33.52
3.56
344
402
0.393537
AAGATTTCCCAGCGAGCCTG
60.394
55.000
0.00
0.00
41.41
4.85
506
568
9.927668
AGTTTTCCTATGTTGGTTATTTGATTG
57.072
29.630
0.00
0.00
0.00
2.67
646
714
8.127327
CACAAGAAAATTCGAGCATAAGATGAT
58.873
33.333
0.00
0.00
0.00
2.45
734
993
2.892852
CAAGAAATGCTTTGGTCCTCCA
59.107
45.455
0.00
0.00
42.66
3.86
735
994
3.582714
CAAGAAATGCTTTGGTCCTCC
57.417
47.619
0.00
0.00
33.60
4.30
765
1024
0.106149
GGCCTAATCACCGGTACAGG
59.894
60.000
6.87
12.56
37.30
4.00
767
1026
0.618107
TGGGCCTAATCACCGGTACA
60.618
55.000
6.87
0.00
0.00
2.90
771
1030
1.228245
CCATGGGCCTAATCACCGG
60.228
63.158
2.85
0.00
0.00
5.28
774
1033
4.929807
CCCCATGGGCCTAATCAC
57.070
61.111
26.87
0.00
35.35
3.06
795
1054
2.620585
GGCCTGCCTATAGCTTCTTTTG
59.379
50.000
0.00
0.00
44.23
2.44
796
1055
2.242196
TGGCCTGCCTATAGCTTCTTTT
59.758
45.455
9.97
0.00
44.23
2.27
799
1058
1.350351
CATGGCCTGCCTATAGCTTCT
59.650
52.381
9.97
0.00
44.23
2.85
800
1059
1.818642
CATGGCCTGCCTATAGCTTC
58.181
55.000
9.97
0.00
44.23
3.86
812
1081
2.749044
CTCACTTGCGCATGGCCT
60.749
61.111
24.99
3.77
42.61
5.19
813
1082
2.747460
TCTCACTTGCGCATGGCC
60.747
61.111
24.99
0.00
42.61
5.36
814
1083
2.482374
GTCTCACTTGCGCATGGC
59.518
61.111
24.99
6.05
43.96
4.40
941
1212
1.068474
CGTGAGACGCTAGGGTTTTG
58.932
55.000
14.33
0.00
33.65
2.44
1975
2255
7.993183
CAGAAATAAGTGATGGTGGTAATAGGT
59.007
37.037
0.00
0.00
0.00
3.08
1982
2262
4.985538
ACACAGAAATAAGTGATGGTGGT
58.014
39.130
0.00
0.00
39.03
4.16
1987
2267
9.903682
ATCAAAGAAACACAGAAATAAGTGATG
57.096
29.630
0.00
0.00
39.03
3.07
2000
2283
9.743057
CCAATAGTAAACAATCAAAGAAACACA
57.257
29.630
0.00
0.00
0.00
3.72
2036
2321
4.917415
GCTGGTCATACAAACAACACATTC
59.083
41.667
0.00
0.00
0.00
2.67
2192
2479
4.592485
ATGCGTTGAACCAAAACCAATA
57.408
36.364
0.00
0.00
0.00
1.90
2194
2481
2.969628
ATGCGTTGAACCAAAACCAA
57.030
40.000
0.00
0.00
0.00
3.67
2195
2482
2.969628
AATGCGTTGAACCAAAACCA
57.030
40.000
0.00
0.00
0.00
3.67
2317
2604
9.255304
TGGTTGTGAACTTGCTATTTATTTTTC
57.745
29.630
0.00
0.00
0.00
2.29
2366
2653
6.127925
CCAACAGAACAAGCACATACATGTAT
60.128
38.462
12.75
12.75
39.39
2.29
2373
2660
6.892658
AATAACCAACAGAACAAGCACATA
57.107
33.333
0.00
0.00
0.00
2.29
2458
2746
5.565592
TGACAATACAATTGCAGCCTTAG
57.434
39.130
5.05
0.00
0.00
2.18
2469
2757
8.035394
CCTATATACCTCGCTTGACAATACAAT
58.965
37.037
0.00
0.00
0.00
2.71
2499
2789
4.503741
TTAGAACAAATGCCTGTGCTTC
57.496
40.909
0.00
0.00
36.53
3.86
2501
2791
4.445452
CATTAGAACAAATGCCTGTGCT
57.555
40.909
0.00
0.00
38.78
4.40
2598
2895
1.140816
GAAGCCACTCAACAGACGAC
58.859
55.000
0.00
0.00
0.00
4.34
2629
2926
3.808728
GAGCATCTGGGCAAACAGTATA
58.191
45.455
2.82
0.00
39.48
1.47
3141
3444
1.673400
TGACGCACAGCTAAGCAAAAA
59.327
42.857
9.84
0.00
0.00
1.94
3160
3463
0.305922
GATCGGATGCGCTCCTTTTG
59.694
55.000
19.30
7.80
42.47
2.44
3285
3593
1.261619
CGGCATGAATTCTTAGACGCC
59.738
52.381
7.05
8.40
34.91
5.68
3291
3599
0.746204
TGCGCCGGCATGAATTCTTA
60.746
50.000
28.98
0.00
46.21
2.10
3323
3631
3.027412
AGGACTGCGAGACATGAACTAT
58.973
45.455
0.00
0.00
0.00
2.12
3324
3632
2.447443
AGGACTGCGAGACATGAACTA
58.553
47.619
0.00
0.00
0.00
2.24
3356
3690
5.050837
CCAAGAGCAACAACATTTTGTAAGC
60.051
40.000
11.90
11.90
45.69
3.09
3368
3702
1.234615
GCTACGGCCAAGAGCAACAA
61.235
55.000
14.10
0.00
46.50
2.83
3370
3704
1.362406
GAGCTACGGCCAAGAGCAAC
61.362
60.000
19.53
11.01
46.50
4.17
3439
3773
3.495100
GGAGTTGAGCAAGGTGAGAGAAA
60.495
47.826
0.00
0.00
0.00
2.52
3446
3780
1.230635
CGGTGGAGTTGAGCAAGGTG
61.231
60.000
0.00
0.00
0.00
4.00
3447
3781
1.071471
CGGTGGAGTTGAGCAAGGT
59.929
57.895
0.00
0.00
0.00
3.50
3448
3782
2.328099
GCGGTGGAGTTGAGCAAGG
61.328
63.158
0.00
0.00
0.00
3.61
3449
3783
2.328099
GGCGGTGGAGTTGAGCAAG
61.328
63.158
0.00
0.00
0.00
4.01
3471
3821
0.955428
TTCATTGCGCAGGTGGAGAC
60.955
55.000
20.29
0.00
0.00
3.36
3473
3823
0.597568
TTTTCATTGCGCAGGTGGAG
59.402
50.000
20.29
5.92
0.00
3.86
3474
3824
0.313672
GTTTTCATTGCGCAGGTGGA
59.686
50.000
20.29
12.24
0.00
4.02
3475
3825
0.031857
TGTTTTCATTGCGCAGGTGG
59.968
50.000
20.29
8.72
0.00
4.61
3533
6311
1.178276
GGAAGCTCGAGACTGAGGAA
58.822
55.000
18.75
0.00
36.47
3.36
3569
6347
5.163642
CCAAATGAAGAAGCTTGAGATGGAG
60.164
44.000
2.10
0.00
0.00
3.86
3571
6349
4.703575
TCCAAATGAAGAAGCTTGAGATGG
59.296
41.667
2.10
3.32
0.00
3.51
3578
6356
7.447594
ACATCAATTTCCAAATGAAGAAGCTT
58.552
30.769
0.00
0.00
33.63
3.74
3588
6366
8.599624
ATGAAGGTCTACATCAATTTCCAAAT
57.400
30.769
0.00
0.00
0.00
2.32
3596
6374
6.888632
AGAAGCAAATGAAGGTCTACATCAAT
59.111
34.615
0.00
0.00
0.00
2.57
3598
6376
5.809001
AGAAGCAAATGAAGGTCTACATCA
58.191
37.500
0.00
0.00
0.00
3.07
3649
6429
4.622220
GCATGATGACCCAAAAGAAAGCAT
60.622
41.667
0.00
0.00
0.00
3.79
3802
6584
5.477510
CCAAGTTTAAACAGCAATATGCCA
58.522
37.500
20.06
0.00
46.52
4.92
3814
6596
5.606505
TCAAAGATTGCCCCAAGTTTAAAC
58.393
37.500
10.47
10.47
0.00
2.01
3888
6670
0.378962
CATGTCTCGACGTCCTCCTC
59.621
60.000
10.58
0.00
0.00
3.71
3919
6701
4.755266
AGGACATCGGCTACATAAAACT
57.245
40.909
0.00
0.00
0.00
2.66
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.