Multiple sequence alignment - TraesCS3D01G263000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G263000 chr3D 100.000 3110 0 0 1 3110 365055622 365052513 0.000000e+00 5744.0
1 TraesCS3D01G263000 chr3A 94.744 2321 91 12 811 3108 486930088 486927776 0.000000e+00 3581.0
2 TraesCS3D01G263000 chr3A 89.825 629 52 2 1 617 486931389 486930761 0.000000e+00 797.0
3 TraesCS3D01G263000 chr3B 96.353 1316 32 6 811 2125 475385760 475384460 0.000000e+00 2150.0
4 TraesCS3D01G263000 chr3B 90.516 717 20 17 2218 2919 475384538 475383855 0.000000e+00 904.0
5 TraesCS3D01G263000 chr3B 90.019 531 51 2 6 535 475386759 475386230 0.000000e+00 686.0
6 TraesCS3D01G263000 chr3B 99.474 190 1 0 2915 3104 475383744 475383555 2.300000e-91 346.0
7 TraesCS3D01G263000 chr1A 80.139 861 150 15 1187 2032 550593553 550592699 9.470000e-175 623.0
8 TraesCS3D01G263000 chr1B 79.717 848 150 18 1191 2026 628499511 628498674 7.430000e-166 593.0
9 TraesCS3D01G263000 chr1D 94.737 38 0 2 515 551 467133617 467133581 1.200000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G263000 chr3D 365052513 365055622 3109 True 5744.0 5744 100.0000 1 3110 1 chr3D.!!$R1 3109
1 TraesCS3D01G263000 chr3A 486927776 486931389 3613 True 2189.0 3581 92.2845 1 3108 2 chr3A.!!$R1 3107
2 TraesCS3D01G263000 chr3B 475383555 475386759 3204 True 1021.5 2150 94.0905 6 3104 4 chr3B.!!$R1 3098
3 TraesCS3D01G263000 chr1A 550592699 550593553 854 True 623.0 623 80.1390 1187 2032 1 chr1A.!!$R1 845
4 TraesCS3D01G263000 chr1B 628498674 628499511 837 True 593.0 593 79.7170 1191 2026 1 chr1B.!!$R1 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.237498 GCTCCCGACAAAAGGTTTCG 59.763 55.0 0.0 0.0 0.0 3.46 F
761 1336 0.409484 AATGAGAAAGGGGGTGTGGG 59.591 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 2400 2.744709 GCGGCGGTGAGGCTTTTA 60.745 61.111 9.78 0.0 44.22 1.52 R
2504 3114 0.260230 AAGAGCCTCTCGATCCAGGA 59.740 55.000 8.96 0.0 35.36 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.237498 GCTCCCGACAAAAGGTTTCG 59.763 55.000 0.00 0.00 0.00 3.46
73 74 1.673920 GAGAGAGGCTCTACAACTCCG 59.326 57.143 18.75 0.00 41.35 4.63
74 75 1.004979 AGAGAGGCTCTACAACTCCGT 59.995 52.381 18.75 0.00 39.28 4.69
106 118 2.279810 TGTCCCGGCGACATCAAGA 61.280 57.895 18.36 0.00 46.80 3.02
128 140 3.361786 TCGGAGTATGAGGTCAATGACA 58.638 45.455 15.86 0.00 33.68 3.58
146 158 3.393106 CCAATGTGCAAGGCCCCC 61.393 66.667 0.00 0.00 0.00 5.40
164 176 3.170672 TATGCCCCAGATGCGGCT 61.171 61.111 9.75 0.00 45.90 5.52
209 221 4.059459 CACGGCGTGCTCGTTGTC 62.059 66.667 28.30 0.00 38.94 3.18
254 266 2.367567 ACGGAGAAAGAAGTTGTAGCCA 59.632 45.455 0.00 0.00 0.00 4.75
320 332 4.517663 CCATGGTTGGGCTGTCAA 57.482 55.556 2.57 0.00 39.56 3.18
329 341 4.740822 GGCTGTCAATGCCCCCGT 62.741 66.667 0.00 0.00 44.32 5.28
368 380 1.683917 GACATCTACGGTGATGCTCCT 59.316 52.381 16.36 1.54 45.51 3.69
376 388 1.403382 CGGTGATGCTCCTATCCATCG 60.403 57.143 0.00 0.00 40.48 3.84
404 416 1.068588 ACGCCGAGCAGATTAGCATTA 59.931 47.619 0.00 0.00 36.85 1.90
408 420 3.126000 GCCGAGCAGATTAGCATTAATCC 59.874 47.826 2.87 0.00 44.08 3.01
452 464 1.485514 CGCGACAACGACGACAAAT 59.514 52.632 0.00 0.00 42.66 2.32
456 468 1.784856 CGACAACGACGACAAATGAGT 59.215 47.619 0.00 0.00 42.66 3.41
464 476 3.654414 GACGACAAATGAGTGAAGGACT 58.346 45.455 0.00 0.00 37.76 3.85
474 486 3.081409 GAAGGACTAGGGCGGCCA 61.081 66.667 31.59 15.08 0.00 5.36
529 541 6.403866 AGTAGAACACATGCCAAATTTTGA 57.596 33.333 10.72 0.00 0.00 2.69
592 604 8.837788 TGTATGAATTATATCCTTGCTCACAG 57.162 34.615 0.00 0.00 0.00 3.66
608 620 1.696336 CACAGCTCCCCTATGCTATGT 59.304 52.381 0.00 0.00 37.81 2.29
609 621 1.974236 ACAGCTCCCCTATGCTATGTC 59.026 52.381 0.00 0.00 37.81 3.06
611 623 1.150986 AGCTCCCCTATGCTATGTCCT 59.849 52.381 0.00 0.00 37.81 3.85
612 624 2.383683 AGCTCCCCTATGCTATGTCCTA 59.616 50.000 0.00 0.00 37.81 2.94
614 626 3.777522 GCTCCCCTATGCTATGTCCTAAT 59.222 47.826 0.00 0.00 0.00 1.73
617 629 6.126863 TCCCCTATGCTATGTCCTAATTTG 57.873 41.667 0.00 0.00 0.00 2.32
618 630 5.849475 TCCCCTATGCTATGTCCTAATTTGA 59.151 40.000 0.00 0.00 0.00 2.69
620 632 7.682459 TCCCCTATGCTATGTCCTAATTTGATA 59.318 37.037 0.00 0.00 0.00 2.15
621 633 7.770897 CCCCTATGCTATGTCCTAATTTGATAC 59.229 40.741 0.00 0.00 0.00 2.24
623 635 9.593134 CCTATGCTATGTCCTAATTTGATACTC 57.407 37.037 0.00 0.00 0.00 2.59
624 636 9.593134 CTATGCTATGTCCTAATTTGATACTCC 57.407 37.037 0.00 0.00 0.00 3.85
626 638 6.558775 TGCTATGTCCTAATTTGATACTCCCT 59.441 38.462 0.00 0.00 0.00 4.20
627 639 7.733047 TGCTATGTCCTAATTTGATACTCCCTA 59.267 37.037 0.00 0.00 0.00 3.53
628 640 8.035984 GCTATGTCCTAATTTGATACTCCCTAC 58.964 40.741 0.00 0.00 0.00 3.18
633 1208 7.235812 GTCCTAATTTGATACTCCCTACATCCT 59.764 40.741 0.00 0.00 0.00 3.24
646 1221 8.612145 ACTCCCTACATCCTAAAATAAGTGTTT 58.388 33.333 0.00 0.00 0.00 2.83
647 1222 9.462606 CTCCCTACATCCTAAAATAAGTGTTTT 57.537 33.333 0.00 0.00 35.60 2.43
696 1271 9.614792 AAACTTAGTATTCAAGTTGAGACACTT 57.385 29.630 17.52 4.88 43.62 3.16
705 1280 9.956720 ATTCAAGTTGAGACACTTTATTTTGAG 57.043 29.630 5.56 0.00 34.60 3.02
706 1281 8.731275 TCAAGTTGAGACACTTTATTTTGAGA 57.269 30.769 0.08 0.00 34.60 3.27
707 1282 9.342308 TCAAGTTGAGACACTTTATTTTGAGAT 57.658 29.630 0.08 0.00 34.60 2.75
708 1283 9.390795 CAAGTTGAGACACTTTATTTTGAGATG 57.609 33.333 0.00 0.00 34.60 2.90
709 1284 8.103948 AGTTGAGACACTTTATTTTGAGATGG 57.896 34.615 0.00 0.00 0.00 3.51
710 1285 7.939039 AGTTGAGACACTTTATTTTGAGATGGA 59.061 33.333 0.00 0.00 0.00 3.41
711 1286 7.912056 TGAGACACTTTATTTTGAGATGGAG 57.088 36.000 0.00 0.00 0.00 3.86
712 1287 7.453393 TGAGACACTTTATTTTGAGATGGAGT 58.547 34.615 0.00 0.00 0.00 3.85
713 1288 7.388776 TGAGACACTTTATTTTGAGATGGAGTG 59.611 37.037 0.00 0.00 39.21 3.51
714 1289 7.453393 AGACACTTTATTTTGAGATGGAGTGA 58.547 34.615 7.11 0.00 37.34 3.41
715 1290 7.939039 AGACACTTTATTTTGAGATGGAGTGAA 59.061 33.333 7.11 0.00 37.34 3.18
716 1291 8.641498 ACACTTTATTTTGAGATGGAGTGAAT 57.359 30.769 7.11 0.00 37.34 2.57
717 1292 9.739276 ACACTTTATTTTGAGATGGAGTGAATA 57.261 29.630 7.11 0.00 37.34 1.75
752 1327 8.883731 ACGAACTATATGAACAAATGAGAAAGG 58.116 33.333 0.00 0.00 0.00 3.11
753 1328 8.338259 CGAACTATATGAACAAATGAGAAAGGG 58.662 37.037 0.00 0.00 0.00 3.95
754 1329 8.525290 AACTATATGAACAAATGAGAAAGGGG 57.475 34.615 0.00 0.00 0.00 4.79
755 1330 7.062957 ACTATATGAACAAATGAGAAAGGGGG 58.937 38.462 0.00 0.00 0.00 5.40
756 1331 3.611025 TGAACAAATGAGAAAGGGGGT 57.389 42.857 0.00 0.00 0.00 4.95
757 1332 3.230134 TGAACAAATGAGAAAGGGGGTG 58.770 45.455 0.00 0.00 0.00 4.61
758 1333 3.230976 GAACAAATGAGAAAGGGGGTGT 58.769 45.455 0.00 0.00 0.00 4.16
759 1334 2.597455 ACAAATGAGAAAGGGGGTGTG 58.403 47.619 0.00 0.00 0.00 3.82
760 1335 1.895131 CAAATGAGAAAGGGGGTGTGG 59.105 52.381 0.00 0.00 0.00 4.17
761 1336 0.409484 AATGAGAAAGGGGGTGTGGG 59.591 55.000 0.00 0.00 0.00 4.61
762 1337 1.509548 ATGAGAAAGGGGGTGTGGGG 61.510 60.000 0.00 0.00 0.00 4.96
763 1338 2.863988 AGAAAGGGGGTGTGGGGG 60.864 66.667 0.00 0.00 0.00 5.40
778 1353 4.447734 GGGGGTCGTCCTGAACTA 57.552 61.111 0.00 0.00 33.55 2.24
779 1354 2.912020 GGGGGTCGTCCTGAACTAT 58.088 57.895 0.00 0.00 33.55 2.12
780 1355 2.077687 GGGGGTCGTCCTGAACTATA 57.922 55.000 0.00 0.00 33.55 1.31
781 1356 2.606378 GGGGGTCGTCCTGAACTATAT 58.394 52.381 0.00 0.00 33.55 0.86
782 1357 3.771216 GGGGGTCGTCCTGAACTATATA 58.229 50.000 0.00 0.00 33.55 0.86
783 1358 4.351127 GGGGGTCGTCCTGAACTATATAT 58.649 47.826 0.00 0.00 33.55 0.86
784 1359 5.513233 GGGGGTCGTCCTGAACTATATATA 58.487 45.833 0.00 0.00 33.55 0.86
785 1360 6.134754 GGGGGTCGTCCTGAACTATATATAT 58.865 44.000 0.00 0.00 33.55 0.86
786 1361 7.293073 GGGGGTCGTCCTGAACTATATATATA 58.707 42.308 2.49 2.49 33.55 0.86
787 1362 7.949006 GGGGGTCGTCCTGAACTATATATATAT 59.051 40.741 10.10 10.10 33.55 0.86
1722 2328 1.006571 GACAACGTCGGCCTCTGAA 60.007 57.895 0.00 0.00 0.00 3.02
1833 2442 0.603569 ACGAGATCAAGGCGAACACT 59.396 50.000 0.00 0.00 0.00 3.55
2044 2653 0.321122 CAGCCAAGGACTGTCCAGAC 60.321 60.000 27.48 12.75 39.61 3.51
2058 2667 3.429141 AGACACGACGACGCCGAT 61.429 61.111 11.37 0.00 43.96 4.18
2496 3106 3.230976 GAATTCTCTCTCTCCCTCTCCC 58.769 54.545 0.00 0.00 0.00 4.30
2497 3107 1.994399 TTCTCTCTCTCCCTCTCCCT 58.006 55.000 0.00 0.00 0.00 4.20
2504 3114 0.556380 TCTCCCTCTCCCTCTCCCTT 60.556 60.000 0.00 0.00 0.00 3.95
2563 3190 0.608130 CTAGCTAGCCACACCACACA 59.392 55.000 12.13 0.00 0.00 3.72
2582 3209 6.312918 CCACACAACACCACTGTATAATACTC 59.687 42.308 0.00 0.00 0.00 2.59
2600 3227 7.589958 AATACTCCAGTGTAATCTAGTCCAG 57.410 40.000 0.00 0.00 0.00 3.86
2810 3440 0.251564 TGCCGGTTGATCATTTGGGT 60.252 50.000 1.90 0.00 0.00 4.51
2839 3469 8.387813 AGATTTTACTTCACCCTACCATGTTAA 58.612 33.333 0.00 0.00 0.00 2.01
2867 3498 6.227522 TGGTCGTTTCTAGTTGATTCATTCA 58.772 36.000 0.00 0.00 0.00 2.57
3091 3838 6.372659 GTGTGCTCTTCTCCATTCATTTCTTA 59.627 38.462 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.124693 CCTCTCTCTCAGTCGGGGC 61.125 68.421 0.00 0.00 0.00 5.80
65 66 1.272769 GACCTAGCTTCACGGAGTTGT 59.727 52.381 0.00 0.00 41.61 3.32
73 74 1.066071 GGGACAAGGACCTAGCTTCAC 60.066 57.143 0.00 0.00 0.00 3.18
74 75 1.276622 GGGACAAGGACCTAGCTTCA 58.723 55.000 0.00 0.00 0.00 3.02
100 112 4.474394 TGACCTCATACTCCGATCTTGAT 58.526 43.478 0.00 0.00 0.00 2.57
106 118 3.960755 TGTCATTGACCTCATACTCCGAT 59.039 43.478 14.05 0.00 0.00 4.18
128 140 2.604382 GGGGCCTTGCACATTGGT 60.604 61.111 0.84 0.00 30.93 3.67
164 176 2.123597 AGACGGGCCGCCATAGTA 60.124 61.111 28.71 0.00 0.00 1.82
175 187 3.827898 GCCTCGACCTCAGACGGG 61.828 72.222 0.00 0.00 0.00 5.28
209 221 2.146519 CGCGTGTACGAGCACTCTG 61.147 63.158 8.82 0.00 43.02 3.35
254 266 1.036707 GTGGCGCTTCTCCTAGATCT 58.963 55.000 7.64 0.00 0.00 2.75
320 332 2.595655 GAAGGCTTACGGGGGCAT 59.404 61.111 0.00 0.00 0.00 4.40
384 396 0.179073 AATGCTAATCTGCTCGGCGT 60.179 50.000 6.85 0.00 0.00 5.68
404 416 3.397482 GCTGAGAGATGCAATACGGATT 58.603 45.455 0.00 0.00 0.00 3.01
408 420 0.506080 GCGCTGAGAGATGCAATACG 59.494 55.000 0.00 0.00 0.00 3.06
452 464 0.970937 CCGCCCTAGTCCTTCACTCA 60.971 60.000 0.00 0.00 36.43 3.41
456 468 3.081409 GGCCGCCCTAGTCCTTCA 61.081 66.667 0.00 0.00 0.00 3.02
464 476 1.426251 ATTCATCCATGGCCGCCCTA 61.426 55.000 6.96 0.00 0.00 3.53
562 574 9.440773 GAGCAAGGATATAATTCATACATGACA 57.559 33.333 0.00 0.00 36.36 3.58
575 587 3.071602 GGGAGCTGTGAGCAAGGATATAA 59.928 47.826 0.00 0.00 45.56 0.98
592 604 1.650528 AGGACATAGCATAGGGGAGC 58.349 55.000 0.00 0.00 0.00 4.70
608 620 7.313731 AGGATGTAGGGAGTATCAAATTAGGA 58.686 38.462 0.00 0.00 36.25 2.94
609 621 7.560796 AGGATGTAGGGAGTATCAAATTAGG 57.439 40.000 0.00 0.00 36.25 2.69
617 629 9.930693 CACTTATTTTAGGATGTAGGGAGTATC 57.069 37.037 0.00 0.00 0.00 2.24
618 630 9.448587 ACACTTATTTTAGGATGTAGGGAGTAT 57.551 33.333 0.00 0.00 0.00 2.12
620 632 7.750947 ACACTTATTTTAGGATGTAGGGAGT 57.249 36.000 0.00 0.00 0.00 3.85
621 633 9.462606 AAAACACTTATTTTAGGATGTAGGGAG 57.537 33.333 0.00 0.00 29.93 4.30
682 1257 9.390795 CATCTCAAAATAAAGTGTCTCAACTTG 57.609 33.333 0.00 0.00 40.28 3.16
685 1260 8.099364 TCCATCTCAAAATAAAGTGTCTCAAC 57.901 34.615 0.00 0.00 0.00 3.18
690 1265 7.672983 TCACTCCATCTCAAAATAAAGTGTC 57.327 36.000 0.00 0.00 35.53 3.67
726 1301 8.883731 CCTTTCTCATTTGTTCATATAGTTCGT 58.116 33.333 0.00 0.00 0.00 3.85
727 1302 8.338259 CCCTTTCTCATTTGTTCATATAGTTCG 58.662 37.037 0.00 0.00 0.00 3.95
728 1303 8.624776 CCCCTTTCTCATTTGTTCATATAGTTC 58.375 37.037 0.00 0.00 0.00 3.01
729 1304 7.561356 CCCCCTTTCTCATTTGTTCATATAGTT 59.439 37.037 0.00 0.00 0.00 2.24
730 1305 7.062957 CCCCCTTTCTCATTTGTTCATATAGT 58.937 38.462 0.00 0.00 0.00 2.12
731 1306 7.013655 CACCCCCTTTCTCATTTGTTCATATAG 59.986 40.741 0.00 0.00 0.00 1.31
732 1307 6.833416 CACCCCCTTTCTCATTTGTTCATATA 59.167 38.462 0.00 0.00 0.00 0.86
733 1308 5.658190 CACCCCCTTTCTCATTTGTTCATAT 59.342 40.000 0.00 0.00 0.00 1.78
734 1309 5.016173 CACCCCCTTTCTCATTTGTTCATA 58.984 41.667 0.00 0.00 0.00 2.15
735 1310 3.834231 CACCCCCTTTCTCATTTGTTCAT 59.166 43.478 0.00 0.00 0.00 2.57
736 1311 3.230134 CACCCCCTTTCTCATTTGTTCA 58.770 45.455 0.00 0.00 0.00 3.18
737 1312 3.005791 CACACCCCCTTTCTCATTTGTTC 59.994 47.826 0.00 0.00 0.00 3.18
738 1313 2.965147 CACACCCCCTTTCTCATTTGTT 59.035 45.455 0.00 0.00 0.00 2.83
739 1314 2.597455 CACACCCCCTTTCTCATTTGT 58.403 47.619 0.00 0.00 0.00 2.83
740 1315 1.895131 CCACACCCCCTTTCTCATTTG 59.105 52.381 0.00 0.00 0.00 2.32
741 1316 1.203174 CCCACACCCCCTTTCTCATTT 60.203 52.381 0.00 0.00 0.00 2.32
742 1317 0.409484 CCCACACCCCCTTTCTCATT 59.591 55.000 0.00 0.00 0.00 2.57
743 1318 1.509548 CCCCACACCCCCTTTCTCAT 61.510 60.000 0.00 0.00 0.00 2.90
744 1319 2.160171 CCCCACACCCCCTTTCTCA 61.160 63.158 0.00 0.00 0.00 3.27
745 1320 2.763902 CCCCACACCCCCTTTCTC 59.236 66.667 0.00 0.00 0.00 2.87
746 1321 2.863988 CCCCCACACCCCCTTTCT 60.864 66.667 0.00 0.00 0.00 2.52
761 1336 2.077687 TATAGTTCAGGACGACCCCC 57.922 55.000 0.00 0.00 36.73 5.40
762 1337 8.937207 ATATATATATAGTTCAGGACGACCCC 57.063 38.462 3.27 0.00 36.73 4.95
775 1350 9.709387 TGCCCCGCACATATATATATATATAGT 57.291 33.333 20.16 17.29 32.91 2.12
777 1352 8.638873 GCTGCCCCGCACATATATATATATATA 58.361 37.037 20.16 19.97 33.29 0.86
778 1353 7.419057 GGCTGCCCCGCACATATATATATATAT 60.419 40.741 16.45 16.45 34.26 0.86
779 1354 6.127168 GGCTGCCCCGCACATATATATATATA 60.127 42.308 13.72 13.60 33.79 0.86
780 1355 5.338381 GGCTGCCCCGCACATATATATATAT 60.338 44.000 7.66 9.12 33.79 0.86
781 1356 4.020573 GGCTGCCCCGCACATATATATATA 60.021 45.833 7.66 4.92 33.79 0.86
782 1357 3.244561 GGCTGCCCCGCACATATATATAT 60.245 47.826 7.66 0.00 33.79 0.86
783 1358 2.104111 GGCTGCCCCGCACATATATATA 59.896 50.000 7.66 0.00 33.79 0.86
784 1359 1.134098 GGCTGCCCCGCACATATATAT 60.134 52.381 7.66 0.00 33.79 0.86
785 1360 0.251916 GGCTGCCCCGCACATATATA 59.748 55.000 7.66 0.00 33.79 0.86
786 1361 1.002134 GGCTGCCCCGCACATATAT 60.002 57.895 7.66 0.00 33.79 0.86
787 1362 1.988982 TTGGCTGCCCCGCACATATA 61.989 55.000 17.53 0.00 33.79 0.86
788 1363 3.357444 TTGGCTGCCCCGCACATAT 62.357 57.895 17.53 0.00 33.79 1.78
789 1364 4.040426 TTGGCTGCCCCGCACATA 62.040 61.111 17.53 0.00 33.79 2.29
1791 2400 2.744709 GCGGCGGTGAGGCTTTTA 60.745 61.111 9.78 0.00 44.22 1.52
2044 2653 2.497092 CTTCATCGGCGTCGTCGTG 61.497 63.158 19.81 15.96 39.49 4.35
2058 2667 2.224695 TGTGACTACTCCGTCCTCTTCA 60.225 50.000 0.00 0.00 32.97 3.02
2076 2685 0.448990 CATGGCATTGTCTCCGTGTG 59.551 55.000 0.00 0.00 35.25 3.82
2496 3106 1.133637 TCTCGATCCAGGAAGGGAGAG 60.134 57.143 11.56 7.99 41.08 3.20
2497 3107 0.927029 TCTCGATCCAGGAAGGGAGA 59.073 55.000 11.56 11.56 41.08 3.71
2504 3114 0.260230 AAGAGCCTCTCGATCCAGGA 59.740 55.000 8.96 0.00 35.36 3.86
2563 3190 6.869206 ACTGGAGTATTATACAGTGGTGTT 57.131 37.500 5.11 0.00 42.14 3.32
2582 3209 4.141846 ACATGCTGGACTAGATTACACTGG 60.142 45.833 0.00 0.00 0.00 4.00
2810 3440 4.847512 TGGTAGGGTGAAGTAAAATCTGGA 59.152 41.667 0.00 0.00 0.00 3.86
2839 3469 5.995282 TGAATCAACTAGAAACGACCAACAT 59.005 36.000 0.00 0.00 0.00 2.71
2904 3536 1.393539 CAAACCAGTACAAGCGATCCG 59.606 52.381 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.