Multiple sequence alignment - TraesCS3D01G260700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G260700 chr3D 100.000 4532 0 0 1 4532 363050673 363055204 0.000000e+00 8370.0
1 TraesCS3D01G260700 chr3D 98.473 131 2 0 4402 4532 605575825 605575695 9.800000e-57 231.0
2 TraesCS3D01G260700 chr3B 88.963 2546 151 59 1485 3939 472855378 472857884 0.000000e+00 3025.0
3 TraesCS3D01G260700 chr3B 92.857 1176 42 16 149 1305 472854086 472855238 0.000000e+00 1668.0
4 TraesCS3D01G260700 chr3B 83.556 225 24 2 4194 4405 472857991 472858215 9.940000e-47 198.0
5 TraesCS3D01G260700 chr3B 95.238 63 1 1 1357 1419 472855236 472855296 1.040000e-16 99.0
6 TraesCS3D01G260700 chr3A 86.912 2720 181 85 1358 3946 483450427 483453102 0.000000e+00 2889.0
7 TraesCS3D01G260700 chr3A 91.810 1160 52 19 182 1312 483449288 483450433 0.000000e+00 1576.0
8 TraesCS3D01G260700 chr3A 83.451 284 41 3 4073 4351 483453332 483453614 4.500000e-65 259.0
9 TraesCS3D01G260700 chr3A 89.583 96 8 2 3922 4016 583696425 583696331 2.210000e-23 121.0
10 TraesCS3D01G260700 chr4D 80.057 351 40 13 4076 4411 30753208 30752873 2.730000e-57 233.0
11 TraesCS3D01G260700 chr4D 97.403 77 2 0 3931 4007 225215518 225215594 1.020000e-26 132.0
12 TraesCS3D01G260700 chr4D 88.889 99 9 2 3919 4016 300885906 300886003 2.210000e-23 121.0
13 TraesCS3D01G260700 chr4D 91.525 59 2 2 2968 3026 507548286 507548231 1.350000e-10 78.7
14 TraesCS3D01G260700 chr2D 96.947 131 4 0 4402 4532 632246758 632246628 2.120000e-53 220.0
15 TraesCS3D01G260700 chr2D 96.183 131 5 0 4402 4532 164267220 164267350 9.870000e-52 215.0
16 TraesCS3D01G260700 chr2D 94.444 54 2 1 4352 4405 35666040 35666092 1.040000e-11 82.4
17 TraesCS3D01G260700 chr2D 96.774 31 1 0 4038 4068 55589699 55589729 8.000000e-03 52.8
18 TraesCS3D01G260700 chr7D 96.183 131 5 0 4402 4532 518101522 518101392 9.870000e-52 215.0
19 TraesCS3D01G260700 chr7D 83.696 92 11 1 4198 4285 124028239 124028330 2.910000e-12 84.2
20 TraesCS3D01G260700 chr6B 96.183 131 5 0 4402 4532 52814493 52814363 9.870000e-52 215.0
21 TraesCS3D01G260700 chr6B 92.941 85 6 0 3932 4016 304200678 304200594 1.710000e-24 124.0
22 TraesCS3D01G260700 chr4B 96.183 131 5 0 4402 4532 665271626 665271756 9.870000e-52 215.0
23 TraesCS3D01G260700 chr4B 80.147 272 36 5 4152 4405 672954139 672953868 2.150000e-43 187.0
24 TraesCS3D01G260700 chr4B 94.118 85 5 0 3932 4016 137482788 137482872 3.680000e-26 130.0
25 TraesCS3D01G260700 chr4B 96.000 50 2 0 2977 3026 654047024 654047073 1.040000e-11 82.4
26 TraesCS3D01G260700 chr1A 78.750 320 46 8 4103 4404 547943347 547943032 1.290000e-45 195.0
27 TraesCS3D01G260700 chr1B 91.736 121 10 0 4412 4532 534196362 534196242 7.800000e-38 169.0
28 TraesCS3D01G260700 chr5B 94.118 85 5 0 3932 4016 516406431 516406347 3.680000e-26 130.0
29 TraesCS3D01G260700 chr5B 92.941 85 6 0 3932 4016 276409515 276409431 1.710000e-24 124.0
30 TraesCS3D01G260700 chr5B 92.941 85 6 0 3932 4016 471958102 471958018 1.710000e-24 124.0
31 TraesCS3D01G260700 chr2B 94.118 85 5 0 3932 4016 243188284 243188368 3.680000e-26 130.0
32 TraesCS3D01G260700 chr6A 94.118 51 3 0 4352 4402 410788785 410788735 1.350000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G260700 chr3D 363050673 363055204 4531 False 8370.000000 8370 100.0000 1 4532 1 chr3D.!!$F1 4531
1 TraesCS3D01G260700 chr3B 472854086 472858215 4129 False 1247.500000 3025 90.1535 149 4405 4 chr3B.!!$F1 4256
2 TraesCS3D01G260700 chr3A 483449288 483453614 4326 False 1574.666667 2889 87.3910 182 4351 3 chr3A.!!$F1 4169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 1.200020 GAGGGCATTTGGTGTTTCTCG 59.800 52.381 0.00 0.00 0.00 4.04 F
1066 1088 0.035630 GGTGAGTGGCAGATGCTTCT 60.036 55.000 4.59 0.00 41.70 2.85 F
1431 1459 0.179020 TTGATGCTATGCCTTCGGGG 60.179 55.000 0.00 0.00 35.16 5.73 F
2091 2177 0.454600 CTCAACCATGGCATGCAGAC 59.545 55.000 22.02 2.31 0.00 3.51 F
2396 2521 0.735632 CTTCTGCCTGACTCGACTGC 60.736 60.000 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1351 1378 0.029035 CATCGCATTCAAGGCTGCTC 59.971 55.0 0.00 0.00 36.23 4.26 R
2183 2301 0.107703 CCCAGCTCCGAAACAGCATA 60.108 55.0 0.00 0.00 39.56 3.14 R
3084 3286 0.030603 GGAGGGAGGGAGGAAGACAT 60.031 60.0 0.00 0.00 0.00 3.06 R
3097 3300 0.393820 GTGTTGTTACACGGGAGGGA 59.606 55.0 0.00 0.00 44.66 4.20 R
4209 4629 0.249238 GACTAGCTCCTCATGTGGCG 60.249 60.0 9.02 4.11 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.968263 TCTTCCAGGAACTATCTATGACTG 57.032 41.667 0.00 0.00 36.02 3.51
26 27 6.436027 TCTTCCAGGAACTATCTATGACTGT 58.564 40.000 0.00 0.00 36.02 3.55
27 28 6.897966 TCTTCCAGGAACTATCTATGACTGTT 59.102 38.462 0.00 0.00 36.02 3.16
28 29 6.471233 TCCAGGAACTATCTATGACTGTTG 57.529 41.667 0.00 0.00 36.02 3.33
29 30 5.958380 TCCAGGAACTATCTATGACTGTTGT 59.042 40.000 0.00 0.00 36.02 3.32
30 31 6.440647 TCCAGGAACTATCTATGACTGTTGTT 59.559 38.462 0.00 0.00 36.02 2.83
31 32 6.758886 CCAGGAACTATCTATGACTGTTGTTC 59.241 42.308 0.00 0.00 36.02 3.18
32 33 7.323420 CAGGAACTATCTATGACTGTTGTTCA 58.677 38.462 0.00 0.00 36.02 3.18
33 34 7.819415 CAGGAACTATCTATGACTGTTGTTCAA 59.181 37.037 0.00 0.00 36.02 2.69
34 35 8.375506 AGGAACTATCTATGACTGTTGTTCAAA 58.624 33.333 0.00 0.00 36.02 2.69
35 36 9.167311 GGAACTATCTATGACTGTTGTTCAAAT 57.833 33.333 0.00 0.00 35.61 2.32
45 46 8.633075 TGACTGTTGTTCAAATTTTCAATCTC 57.367 30.769 0.00 0.00 0.00 2.75
46 47 7.431960 TGACTGTTGTTCAAATTTTCAATCTCG 59.568 33.333 0.00 0.00 0.00 4.04
47 48 6.697019 ACTGTTGTTCAAATTTTCAATCTCGG 59.303 34.615 0.00 0.00 0.00 4.63
48 49 6.800543 TGTTGTTCAAATTTTCAATCTCGGA 58.199 32.000 0.00 0.00 0.00 4.55
49 50 6.695278 TGTTGTTCAAATTTTCAATCTCGGAC 59.305 34.615 0.00 0.00 0.00 4.79
50 51 6.384258 TGTTCAAATTTTCAATCTCGGACA 57.616 33.333 0.00 0.00 0.00 4.02
51 52 6.205784 TGTTCAAATTTTCAATCTCGGACAC 58.794 36.000 0.00 0.00 0.00 3.67
52 53 6.039270 TGTTCAAATTTTCAATCTCGGACACT 59.961 34.615 0.00 0.00 0.00 3.55
53 54 6.241207 TCAAATTTTCAATCTCGGACACTC 57.759 37.500 0.00 0.00 0.00 3.51
54 55 5.997746 TCAAATTTTCAATCTCGGACACTCT 59.002 36.000 0.00 0.00 0.00 3.24
55 56 7.158697 TCAAATTTTCAATCTCGGACACTCTA 58.841 34.615 0.00 0.00 0.00 2.43
56 57 7.331934 TCAAATTTTCAATCTCGGACACTCTAG 59.668 37.037 0.00 0.00 0.00 2.43
57 58 5.977489 TTTTCAATCTCGGACACTCTAGA 57.023 39.130 0.00 0.00 0.00 2.43
58 59 4.966965 TTCAATCTCGGACACTCTAGAC 57.033 45.455 0.00 0.00 0.00 2.59
59 60 4.223556 TCAATCTCGGACACTCTAGACT 57.776 45.455 0.00 0.00 0.00 3.24
60 61 4.590918 TCAATCTCGGACACTCTAGACTT 58.409 43.478 0.00 0.00 0.00 3.01
61 62 5.742063 TCAATCTCGGACACTCTAGACTTA 58.258 41.667 0.00 0.00 0.00 2.24
62 63 6.178324 TCAATCTCGGACACTCTAGACTTAA 58.822 40.000 0.00 0.00 0.00 1.85
63 64 6.316640 TCAATCTCGGACACTCTAGACTTAAG 59.683 42.308 0.00 0.00 0.00 1.85
64 65 5.163281 TCTCGGACACTCTAGACTTAAGT 57.837 43.478 8.13 8.13 0.00 2.24
65 66 5.558818 TCTCGGACACTCTAGACTTAAGTT 58.441 41.667 10.02 2.79 0.00 2.66
66 67 6.705302 TCTCGGACACTCTAGACTTAAGTTA 58.295 40.000 10.02 3.81 0.00 2.24
67 68 6.593382 TCTCGGACACTCTAGACTTAAGTTAC 59.407 42.308 10.02 0.00 0.00 2.50
68 69 6.233434 TCGGACACTCTAGACTTAAGTTACA 58.767 40.000 10.02 0.00 0.00 2.41
69 70 6.712095 TCGGACACTCTAGACTTAAGTTACAA 59.288 38.462 10.02 0.00 0.00 2.41
70 71 6.800892 CGGACACTCTAGACTTAAGTTACAAC 59.199 42.308 10.02 0.00 0.00 3.32
71 72 7.308469 CGGACACTCTAGACTTAAGTTACAACT 60.308 40.741 10.02 4.34 42.04 3.16
72 73 7.808856 GGACACTCTAGACTTAAGTTACAACTG 59.191 40.741 10.02 4.88 39.66 3.16
73 74 8.461249 ACACTCTAGACTTAAGTTACAACTGA 57.539 34.615 10.02 2.42 39.66 3.41
74 75 8.569641 ACACTCTAGACTTAAGTTACAACTGAG 58.430 37.037 10.02 12.23 39.66 3.35
75 76 8.024285 CACTCTAGACTTAAGTTACAACTGAGG 58.976 40.741 10.02 0.00 39.66 3.86
76 77 7.177041 ACTCTAGACTTAAGTTACAACTGAGGG 59.823 40.741 10.02 3.63 39.66 4.30
77 78 4.895961 AGACTTAAGTTACAACTGAGGGC 58.104 43.478 10.02 0.00 39.66 5.19
78 79 4.347000 AGACTTAAGTTACAACTGAGGGCA 59.653 41.667 10.02 0.00 39.66 5.36
79 80 5.013183 AGACTTAAGTTACAACTGAGGGCAT 59.987 40.000 10.02 0.00 39.66 4.40
80 81 5.631119 ACTTAAGTTACAACTGAGGGCATT 58.369 37.500 1.12 0.00 39.66 3.56
81 82 6.068670 ACTTAAGTTACAACTGAGGGCATTT 58.931 36.000 1.12 0.00 39.66 2.32
82 83 4.853924 AAGTTACAACTGAGGGCATTTG 57.146 40.909 0.00 0.00 39.66 2.32
83 84 3.157087 AGTTACAACTGAGGGCATTTGG 58.843 45.455 0.00 0.00 38.55 3.28
84 85 2.890945 GTTACAACTGAGGGCATTTGGT 59.109 45.455 0.00 0.00 38.55 3.67
85 86 1.331214 ACAACTGAGGGCATTTGGTG 58.669 50.000 0.00 0.00 38.55 4.17
86 87 1.331214 CAACTGAGGGCATTTGGTGT 58.669 50.000 0.00 0.00 32.74 4.16
87 88 1.688197 CAACTGAGGGCATTTGGTGTT 59.312 47.619 0.00 0.00 32.74 3.32
88 89 2.086610 ACTGAGGGCATTTGGTGTTT 57.913 45.000 0.00 0.00 0.00 2.83
89 90 1.963515 ACTGAGGGCATTTGGTGTTTC 59.036 47.619 0.00 0.00 0.00 2.78
90 91 2.242043 CTGAGGGCATTTGGTGTTTCT 58.758 47.619 0.00 0.00 0.00 2.52
91 92 2.229784 CTGAGGGCATTTGGTGTTTCTC 59.770 50.000 0.00 0.00 0.00 2.87
92 93 1.200020 GAGGGCATTTGGTGTTTCTCG 59.800 52.381 0.00 0.00 0.00 4.04
93 94 1.202879 AGGGCATTTGGTGTTTCTCGA 60.203 47.619 0.00 0.00 0.00 4.04
94 95 1.611491 GGGCATTTGGTGTTTCTCGAA 59.389 47.619 0.00 0.00 0.00 3.71
95 96 2.351738 GGGCATTTGGTGTTTCTCGAAG 60.352 50.000 0.00 0.00 0.00 3.79
96 97 2.552315 GGCATTTGGTGTTTCTCGAAGA 59.448 45.455 0.00 0.00 0.00 2.87
97 98 3.004315 GGCATTTGGTGTTTCTCGAAGAA 59.996 43.478 0.00 0.00 34.09 2.52
98 99 4.321230 GGCATTTGGTGTTTCTCGAAGAAT 60.321 41.667 0.00 0.00 33.67 2.40
99 100 5.106317 GGCATTTGGTGTTTCTCGAAGAATA 60.106 40.000 0.00 0.00 33.67 1.75
100 101 6.404734 GGCATTTGGTGTTTCTCGAAGAATAT 60.405 38.462 0.00 0.00 33.67 1.28
101 102 7.201696 GGCATTTGGTGTTTCTCGAAGAATATA 60.202 37.037 0.00 0.00 33.67 0.86
102 103 8.345565 GCATTTGGTGTTTCTCGAAGAATATAT 58.654 33.333 0.00 0.00 33.67 0.86
127 128 9.893305 ATTTAAAATCCACTTTGACGTTTCTAG 57.107 29.630 0.00 0.00 0.00 2.43
128 129 6.937436 AAAATCCACTTTGACGTTTCTAGT 57.063 33.333 0.00 0.00 0.00 2.57
129 130 6.541111 AAATCCACTTTGACGTTTCTAGTC 57.459 37.500 0.00 0.00 38.98 2.59
130 131 3.635331 TCCACTTTGACGTTTCTAGTCG 58.365 45.455 0.00 0.00 41.24 4.18
131 132 3.316029 TCCACTTTGACGTTTCTAGTCGA 59.684 43.478 10.42 0.00 41.24 4.20
132 133 3.424529 CCACTTTGACGTTTCTAGTCGAC 59.575 47.826 7.70 7.70 41.24 4.20
133 134 4.039703 CACTTTGACGTTTCTAGTCGACA 58.960 43.478 19.50 2.84 41.24 4.35
134 135 4.040376 ACTTTGACGTTTCTAGTCGACAC 58.960 43.478 19.50 5.58 41.24 3.67
135 136 2.693797 TGACGTTTCTAGTCGACACC 57.306 50.000 19.50 0.00 41.24 4.16
136 137 2.224606 TGACGTTTCTAGTCGACACCT 58.775 47.619 19.50 0.00 41.24 4.00
137 138 2.620115 TGACGTTTCTAGTCGACACCTT 59.380 45.455 19.50 0.00 41.24 3.50
138 139 3.067180 TGACGTTTCTAGTCGACACCTTT 59.933 43.478 19.50 0.00 41.24 3.11
139 140 4.047142 GACGTTTCTAGTCGACACCTTTT 58.953 43.478 19.50 0.00 0.00 2.27
140 141 4.047142 ACGTTTCTAGTCGACACCTTTTC 58.953 43.478 19.50 1.71 0.00 2.29
141 142 3.427863 CGTTTCTAGTCGACACCTTTTCC 59.572 47.826 19.50 0.00 0.00 3.13
142 143 4.374399 GTTTCTAGTCGACACCTTTTCCA 58.626 43.478 19.50 0.00 0.00 3.53
143 144 3.655276 TCTAGTCGACACCTTTTCCAC 57.345 47.619 19.50 0.00 0.00 4.02
144 145 3.228453 TCTAGTCGACACCTTTTCCACT 58.772 45.455 19.50 0.00 0.00 4.00
145 146 2.240493 AGTCGACACCTTTTCCACTG 57.760 50.000 19.50 0.00 0.00 3.66
146 147 1.485066 AGTCGACACCTTTTCCACTGT 59.515 47.619 19.50 0.00 0.00 3.55
147 148 1.597663 GTCGACACCTTTTCCACTGTG 59.402 52.381 11.55 0.00 34.92 3.66
162 163 2.126888 GTGACGTTTGGCGCCATG 60.127 61.111 33.25 24.74 46.11 3.66
184 185 4.096682 TGTTTCGTGTTACAAGGGAAAAGG 59.903 41.667 8.38 0.00 0.00 3.11
254 255 6.815142 GTGTAGTGGTATTATTTGACCGTTCT 59.185 38.462 0.00 0.00 38.69 3.01
418 431 2.564947 ACACTTCTCTAGCCTTCCACAG 59.435 50.000 0.00 0.00 0.00 3.66
533 546 4.715130 CCCCCACCCGTCTCTCCA 62.715 72.222 0.00 0.00 0.00 3.86
544 557 3.847602 CTCTCCAGGCCCGAGCAG 61.848 72.222 11.82 7.31 42.56 4.24
545 558 4.382541 TCTCCAGGCCCGAGCAGA 62.383 66.667 11.82 0.00 42.56 4.26
546 559 3.847602 CTCCAGGCCCGAGCAGAG 61.848 72.222 0.00 0.00 42.56 3.35
677 693 2.520741 CTCCTCCTCCTCCTCGGC 60.521 72.222 0.00 0.00 0.00 5.54
1066 1088 0.035630 GGTGAGTGGCAGATGCTTCT 60.036 55.000 4.59 0.00 41.70 2.85
1076 1098 2.670509 GCAGATGCTTCTTGGCTTGTTC 60.671 50.000 0.00 0.00 38.21 3.18
1086 1108 1.522668 TGGCTTGTTCGGATCTGTTG 58.477 50.000 0.42 0.00 0.00 3.33
1088 1110 1.523758 GCTTGTTCGGATCTGTTGGT 58.476 50.000 0.42 0.00 0.00 3.67
1094 1116 0.904649 TCGGATCTGTTGGTGCTCAT 59.095 50.000 0.42 0.00 0.00 2.90
1098 1120 1.028330 ATCTGTTGGTGCTCATGGCG 61.028 55.000 0.00 0.00 45.43 5.69
1302 1329 4.945292 TCGTTTCAATTTCACATTTGCG 57.055 36.364 0.00 0.00 0.00 4.85
1303 1330 3.181377 TCGTTTCAATTTCACATTTGCGC 59.819 39.130 0.00 0.00 0.00 6.09
1304 1331 3.661419 CGTTTCAATTTCACATTTGCGCC 60.661 43.478 4.18 0.00 0.00 6.53
1305 1332 2.077413 TCAATTTCACATTTGCGCCC 57.923 45.000 4.18 0.00 0.00 6.13
1306 1333 1.617850 TCAATTTCACATTTGCGCCCT 59.382 42.857 4.18 0.00 0.00 5.19
1307 1334 2.036992 TCAATTTCACATTTGCGCCCTT 59.963 40.909 4.18 0.00 0.00 3.95
1308 1335 2.368655 ATTTCACATTTGCGCCCTTC 57.631 45.000 4.18 0.00 0.00 3.46
1309 1336 1.035923 TTTCACATTTGCGCCCTTCA 58.964 45.000 4.18 0.00 0.00 3.02
1310 1337 1.035923 TTCACATTTGCGCCCTTCAA 58.964 45.000 4.18 0.00 0.00 2.69
1311 1338 1.035923 TCACATTTGCGCCCTTCAAA 58.964 45.000 4.18 0.00 37.75 2.69
1312 1339 1.410517 TCACATTTGCGCCCTTCAAAA 59.589 42.857 4.18 0.00 37.04 2.44
1313 1340 2.036992 TCACATTTGCGCCCTTCAAAAT 59.963 40.909 4.18 0.00 37.04 1.82
1314 1341 2.412770 CACATTTGCGCCCTTCAAAATC 59.587 45.455 4.18 0.00 37.04 2.17
1315 1342 2.001872 CATTTGCGCCCTTCAAAATCC 58.998 47.619 4.18 0.00 37.04 3.01
1316 1343 1.043816 TTTGCGCCCTTCAAAATCCA 58.956 45.000 4.18 0.00 31.27 3.41
1317 1344 0.602562 TTGCGCCCTTCAAAATCCAG 59.397 50.000 4.18 0.00 0.00 3.86
1318 1345 1.153765 GCGCCCTTCAAAATCCAGC 60.154 57.895 0.00 0.00 0.00 4.85
1319 1346 1.598701 GCGCCCTTCAAAATCCAGCT 61.599 55.000 0.00 0.00 0.00 4.24
1320 1347 0.890683 CGCCCTTCAAAATCCAGCTT 59.109 50.000 0.00 0.00 0.00 3.74
1321 1348 1.135286 CGCCCTTCAAAATCCAGCTTC 60.135 52.381 0.00 0.00 0.00 3.86
1322 1349 1.135286 GCCCTTCAAAATCCAGCTTCG 60.135 52.381 0.00 0.00 0.00 3.79
1323 1350 1.135286 CCCTTCAAAATCCAGCTTCGC 60.135 52.381 0.00 0.00 0.00 4.70
1324 1351 1.815003 CCTTCAAAATCCAGCTTCGCT 59.185 47.619 0.00 0.00 40.77 4.93
1336 1363 3.505464 AGCTTCGCTGTTACGATTACT 57.495 42.857 0.00 0.00 42.54 2.24
1337 1364 3.436496 AGCTTCGCTGTTACGATTACTC 58.564 45.455 0.00 0.00 42.54 2.59
1338 1365 3.128938 AGCTTCGCTGTTACGATTACTCT 59.871 43.478 0.00 0.00 42.54 3.24
1339 1366 3.858238 GCTTCGCTGTTACGATTACTCTT 59.142 43.478 0.00 0.00 42.54 2.85
1340 1367 4.326548 GCTTCGCTGTTACGATTACTCTTT 59.673 41.667 0.00 0.00 42.54 2.52
1341 1368 5.163982 GCTTCGCTGTTACGATTACTCTTTT 60.164 40.000 0.00 0.00 42.54 2.27
1342 1369 6.034256 GCTTCGCTGTTACGATTACTCTTTTA 59.966 38.462 0.00 0.00 42.54 1.52
1343 1370 7.502177 TTCGCTGTTACGATTACTCTTTTAG 57.498 36.000 0.00 0.00 42.54 1.85
1344 1371 5.514204 TCGCTGTTACGATTACTCTTTTAGC 59.486 40.000 0.00 0.00 37.09 3.09
1345 1372 5.552104 CGCTGTTACGATTACTCTTTTAGCG 60.552 44.000 0.00 0.00 42.14 4.26
1346 1373 5.514204 GCTGTTACGATTACTCTTTTAGCGA 59.486 40.000 0.00 0.00 0.00 4.93
1347 1374 6.198591 GCTGTTACGATTACTCTTTTAGCGAT 59.801 38.462 0.00 0.00 0.00 4.58
1348 1375 7.254017 GCTGTTACGATTACTCTTTTAGCGATT 60.254 37.037 0.00 0.00 0.00 3.34
1349 1376 9.229784 CTGTTACGATTACTCTTTTAGCGATTA 57.770 33.333 0.00 0.00 0.00 1.75
1350 1377 9.740239 TGTTACGATTACTCTTTTAGCGATTAT 57.260 29.630 0.00 0.00 0.00 1.28
1351 1378 9.990888 GTTACGATTACTCTTTTAGCGATTATG 57.009 33.333 0.00 0.00 0.00 1.90
1352 1379 9.955208 TTACGATTACTCTTTTAGCGATTATGA 57.045 29.630 0.00 0.00 0.00 2.15
1353 1380 8.508800 ACGATTACTCTTTTAGCGATTATGAG 57.491 34.615 0.00 0.00 0.00 2.90
1354 1381 7.115095 ACGATTACTCTTTTAGCGATTATGAGC 59.885 37.037 0.00 0.00 0.00 4.26
1355 1382 7.114953 CGATTACTCTTTTAGCGATTATGAGCA 59.885 37.037 0.00 0.00 35.48 4.26
1399 1427 2.855209 AGCATCTGAAACAGTGCTCT 57.145 45.000 16.54 0.00 41.30 4.09
1400 1428 2.697654 AGCATCTGAAACAGTGCTCTC 58.302 47.619 16.54 0.00 41.30 3.20
1419 1447 1.346395 TCCACTACCACGTTTGATGCT 59.654 47.619 0.00 0.00 0.00 3.79
1420 1448 2.563620 TCCACTACCACGTTTGATGCTA 59.436 45.455 0.00 0.00 0.00 3.49
1421 1449 3.196901 TCCACTACCACGTTTGATGCTAT 59.803 43.478 0.00 0.00 0.00 2.97
1422 1450 3.309682 CCACTACCACGTTTGATGCTATG 59.690 47.826 0.00 0.00 0.00 2.23
1423 1451 2.936498 ACTACCACGTTTGATGCTATGC 59.064 45.455 0.00 0.00 0.00 3.14
1424 1452 1.094785 ACCACGTTTGATGCTATGCC 58.905 50.000 0.00 0.00 0.00 4.40
1425 1453 1.340017 ACCACGTTTGATGCTATGCCT 60.340 47.619 0.00 0.00 0.00 4.75
1426 1454 1.745087 CCACGTTTGATGCTATGCCTT 59.255 47.619 0.00 0.00 0.00 4.35
1427 1455 2.223340 CCACGTTTGATGCTATGCCTTC 60.223 50.000 0.00 0.00 0.00 3.46
1428 1456 1.665679 ACGTTTGATGCTATGCCTTCG 59.334 47.619 0.00 0.00 0.00 3.79
1429 1457 1.003545 CGTTTGATGCTATGCCTTCGG 60.004 52.381 0.00 0.00 0.00 4.30
1430 1458 1.334869 GTTTGATGCTATGCCTTCGGG 59.665 52.381 0.00 0.00 38.37 5.14
1431 1459 0.179020 TTGATGCTATGCCTTCGGGG 60.179 55.000 0.00 0.00 35.16 5.73
1467 1503 4.331968 TCCGTATGCAAGTGGAATCTTTT 58.668 39.130 0.00 0.00 0.00 2.27
1469 1505 4.155826 CCGTATGCAAGTGGAATCTTTTGA 59.844 41.667 0.00 0.00 0.00 2.69
1510 1574 0.723414 CGCTGCGTTTCTCATGTGAT 59.277 50.000 14.93 0.00 0.00 3.06
1511 1575 1.528400 CGCTGCGTTTCTCATGTGATG 60.528 52.381 14.93 0.00 0.00 3.07
1842 1918 1.133363 GTCGGTGCGCGATTACGTTA 61.133 55.000 12.10 0.00 41.98 3.18
1866 1942 1.935933 AAGATTCCCGTGCGTATGAC 58.064 50.000 0.00 0.00 0.00 3.06
1871 1950 2.963548 TCCCGTGCGTATGACAATAA 57.036 45.000 0.00 0.00 0.00 1.40
1876 1958 4.149922 CCCGTGCGTATGACAATAATAGTG 59.850 45.833 0.00 0.00 0.00 2.74
1910 1992 4.880696 TGTCATTGTGTGTGATCTGACAAA 59.119 37.500 7.47 0.00 39.80 2.83
1911 1993 5.532032 TGTCATTGTGTGTGATCTGACAAAT 59.468 36.000 7.47 4.52 39.80 2.32
1912 1994 5.854866 GTCATTGTGTGTGATCTGACAAATG 59.145 40.000 16.01 16.01 34.57 2.32
1914 1996 5.833406 TTGTGTGTGATCTGACAAATGTT 57.167 34.783 0.00 0.00 0.00 2.71
1915 1997 5.422666 TGTGTGTGATCTGACAAATGTTC 57.577 39.130 0.00 0.00 0.00 3.18
1916 1998 4.024977 TGTGTGTGATCTGACAAATGTTCG 60.025 41.667 0.00 0.00 0.00 3.95
1917 1999 4.024893 GTGTGTGATCTGACAAATGTTCGT 60.025 41.667 0.00 0.00 0.00 3.85
1918 2000 4.024977 TGTGTGATCTGACAAATGTTCGTG 60.025 41.667 0.00 0.00 0.00 4.35
2091 2177 0.454600 CTCAACCATGGCATGCAGAC 59.545 55.000 22.02 2.31 0.00 3.51
2181 2299 3.074412 AGTCAAATGGCGTCCAAACTAG 58.926 45.455 2.68 0.00 36.95 2.57
2182 2300 3.071479 GTCAAATGGCGTCCAAACTAGA 58.929 45.455 0.00 0.00 36.95 2.43
2183 2301 3.689649 GTCAAATGGCGTCCAAACTAGAT 59.310 43.478 0.00 0.00 36.95 1.98
2184 2302 4.873827 GTCAAATGGCGTCCAAACTAGATA 59.126 41.667 0.00 0.00 36.95 1.98
2249 2371 2.689471 TGAGCATGACAACCCATAATGC 59.311 45.455 0.00 0.00 43.10 3.56
2250 2372 2.034124 AGCATGACAACCCATAATGCC 58.966 47.619 0.00 0.00 43.66 4.40
2260 2382 6.405538 ACAACCCATAATGCCACTTTATTTG 58.594 36.000 0.00 0.00 0.00 2.32
2311 2433 2.627515 AGCGGATCGTACAGTAGGTA 57.372 50.000 0.27 0.00 0.00 3.08
2396 2521 0.735632 CTTCTGCCTGACTCGACTGC 60.736 60.000 0.00 0.00 0.00 4.40
2493 2627 6.224584 TGTTTGTGTATTTCGTGATCACCTA 58.775 36.000 20.03 5.86 0.00 3.08
2530 2664 8.844244 GCTCTTATCTTATTGTTGGATGTGAAT 58.156 33.333 0.00 0.00 0.00 2.57
2537 2674 9.123902 TCTTATTGTTGGATGTGAATATTGAGG 57.876 33.333 0.00 0.00 0.00 3.86
2542 2679 6.152661 TGTTGGATGTGAATATTGAGGGTTTC 59.847 38.462 0.00 0.00 0.00 2.78
2556 2693 1.703513 GGGTTTCCTTGTCCCTGTAGT 59.296 52.381 0.00 0.00 38.29 2.73
2557 2694 2.908351 GGGTTTCCTTGTCCCTGTAGTA 59.092 50.000 0.00 0.00 38.29 1.82
2558 2695 3.055312 GGGTTTCCTTGTCCCTGTAGTAG 60.055 52.174 0.00 0.00 38.29 2.57
2581 2725 5.995055 GGCAACTATCAAAGATATGCAGAC 58.005 41.667 12.16 0.00 35.77 3.51
2604 2748 2.093711 GTGGGTGGGGCAATTTAACATC 60.094 50.000 0.00 0.00 0.00 3.06
2605 2749 2.225496 TGGGTGGGGCAATTTAACATCT 60.225 45.455 0.00 0.00 0.00 2.90
2606 2750 2.430694 GGGTGGGGCAATTTAACATCTC 59.569 50.000 0.00 0.00 0.00 2.75
2607 2751 3.096092 GGTGGGGCAATTTAACATCTCA 58.904 45.455 0.00 0.00 0.00 3.27
2611 2755 4.837860 TGGGGCAATTTAACATCTCAAGTT 59.162 37.500 0.00 0.00 0.00 2.66
2613 2757 5.279456 GGGGCAATTTAACATCTCAAGTTGT 60.279 40.000 2.11 0.00 0.00 3.32
2614 2758 6.071616 GGGGCAATTTAACATCTCAAGTTGTA 60.072 38.462 2.11 0.00 0.00 2.41
2659 2813 1.285078 ACCTATTTCCTGGTCTTGCCC 59.715 52.381 0.00 0.00 36.04 5.36
2660 2814 1.566231 CCTATTTCCTGGTCTTGCCCT 59.434 52.381 0.00 0.00 36.04 5.19
2695 2849 2.657336 GCGTGATGCAAAATGAGCC 58.343 52.632 0.00 0.00 45.45 4.70
2697 2851 1.621107 CGTGATGCAAAATGAGCCAC 58.379 50.000 0.00 0.00 0.00 5.01
2698 2852 1.733389 CGTGATGCAAAATGAGCCACC 60.733 52.381 0.00 0.00 0.00 4.61
2699 2853 0.896923 TGATGCAAAATGAGCCACCC 59.103 50.000 0.00 0.00 0.00 4.61
2725 2902 6.657966 ACCTGAAGTATAACCTTAAAACCTGC 59.342 38.462 0.00 0.00 0.00 4.85
2809 2994 0.988832 ATCCGTGGGCCTAAAAGTGA 59.011 50.000 4.53 0.00 0.00 3.41
2820 3005 8.308207 GTGGGCCTAAAAGTGACAATTTTTATA 58.692 33.333 17.71 1.03 30.04 0.98
2866 3057 6.552859 TCTTTATTCGTTCATGCTTGTTCA 57.447 33.333 0.00 0.00 0.00 3.18
2938 3138 7.042925 GCAATGATTTCTGTCTAATGAAATGCC 60.043 37.037 5.80 0.00 41.30 4.40
3084 3286 5.184287 TGTCGACAACATGACTTATGAGGTA 59.816 40.000 17.62 0.00 39.21 3.08
3097 3300 3.715648 ATGAGGTATGTCTTCCTCCCT 57.284 47.619 8.45 0.00 46.76 4.20
3124 3340 2.034053 CCGTGTAACAACACTTGGCATT 59.966 45.455 7.04 0.00 38.40 3.56
3137 3353 3.817084 ACTTGGCATTATCATCGTGATGG 59.183 43.478 9.81 0.00 37.70 3.51
3146 3362 3.417069 TCATCGTGATGGACCAACTTT 57.583 42.857 9.81 0.00 39.24 2.66
3219 3436 1.540267 GGCTACGCGAGGATGAGATAA 59.460 52.381 15.93 0.00 0.00 1.75
3230 3447 4.999751 GGATGAGATAATTCGCAACCTC 57.000 45.455 0.04 0.00 40.14 3.85
3306 3523 4.963276 TGCAGTATTTGTCAAGTATGCC 57.037 40.909 14.18 0.00 0.00 4.40
3310 3527 5.431765 CAGTATTTGTCAAGTATGCCCTCT 58.568 41.667 0.00 0.00 0.00 3.69
3321 3538 1.907470 ATGCCCTCTCCCTCCTTCCT 61.907 60.000 0.00 0.00 0.00 3.36
3322 3539 1.307430 GCCCTCTCCCTCCTTCCTT 60.307 63.158 0.00 0.00 0.00 3.36
3323 3540 1.631071 GCCCTCTCCCTCCTTCCTTG 61.631 65.000 0.00 0.00 0.00 3.61
3330 3547 5.459505 CTCTCCCTCCTTCCTTGATAGTTA 58.540 45.833 0.00 0.00 0.00 2.24
3331 3548 6.044411 TCTCCCTCCTTCCTTGATAGTTAT 57.956 41.667 0.00 0.00 0.00 1.89
3336 3553 4.240323 TCCTTCCTTGATAGTTATCCCCC 58.760 47.826 0.00 0.00 31.71 5.40
3345 3562 2.769602 AGTTATCCCCCGCTTCTCTA 57.230 50.000 0.00 0.00 0.00 2.43
3351 3569 6.778559 AGTTATCCCCCGCTTCTCTATATATC 59.221 42.308 0.00 0.00 0.00 1.63
3352 3570 4.603094 TCCCCCGCTTCTCTATATATCA 57.397 45.455 0.00 0.00 0.00 2.15
3358 3582 4.672862 CCGCTTCTCTATATATCAATCGCG 59.327 45.833 0.00 0.00 35.97 5.87
3583 3807 1.422402 GTACCTGGGTGGACCTGAAAA 59.578 52.381 2.07 0.00 40.42 2.29
3585 3809 0.895559 CCTGGGTGGACCTGAAAAGC 60.896 60.000 0.00 0.00 40.42 3.51
3586 3810 0.895559 CTGGGTGGACCTGAAAAGCC 60.896 60.000 0.00 0.00 40.42 4.35
3598 3827 3.633986 CCTGAAAAGCCTCTCTTTGTTGT 59.366 43.478 0.00 0.00 43.84 3.32
3714 3946 8.292444 TCTTTTATCAAACATATGGGTTCTGG 57.708 34.615 7.80 0.00 0.00 3.86
3716 3948 9.184523 CTTTTATCAAACATATGGGTTCTGGTA 57.815 33.333 7.80 0.00 0.00 3.25
3717 3949 9.707957 TTTTATCAAACATATGGGTTCTGGTAT 57.292 29.630 7.80 0.00 0.00 2.73
3722 3954 3.976654 ACATATGGGTTCTGGTATGCTCT 59.023 43.478 7.80 0.00 0.00 4.09
3725 3957 3.350219 TGGGTTCTGGTATGCTCTTTC 57.650 47.619 0.00 0.00 0.00 2.62
3732 3964 4.774124 TCTGGTATGCTCTTTCAAGATGG 58.226 43.478 0.00 0.00 33.93 3.51
3780 4012 2.330216 ACTGACTTAGGCTCAGGTTGT 58.670 47.619 0.10 0.00 39.69 3.32
3787 4019 5.876357 ACTTAGGCTCAGGTTGTTGAATTA 58.124 37.500 0.10 0.00 0.00 1.40
3856 4093 1.741706 CAGACAAAGCGGATCAAGCAT 59.258 47.619 13.69 0.28 37.01 3.79
3860 4097 3.081061 ACAAAGCGGATCAAGCATACAA 58.919 40.909 13.69 0.00 37.01 2.41
3879 4117 7.008266 GCATACAATGAAAATAGACAACGGTTG 59.992 37.037 18.81 18.81 0.00 3.77
3891 4129 2.151202 CAACGGTTGCTAATCCACTGT 58.849 47.619 8.09 0.00 0.00 3.55
3899 4137 6.511767 CGGTTGCTAATCCACTGTATTTCATC 60.512 42.308 0.00 0.00 0.00 2.92
3902 4140 7.558161 TGCTAATCCACTGTATTTCATCAAG 57.442 36.000 0.00 0.00 0.00 3.02
3917 4155 4.655963 TCATCAAGCTTTATGGGCTATCC 58.344 43.478 18.24 0.00 39.30 2.59
3918 4156 3.126001 TCAAGCTTTATGGGCTATCCG 57.874 47.619 0.00 0.00 39.30 4.18
3937 4175 5.261209 TCCGCAAGCAATAGCAAAATATT 57.739 34.783 0.00 0.00 45.49 1.28
3938 4176 6.384258 TCCGCAAGCAATAGCAAAATATTA 57.616 33.333 0.00 0.00 45.49 0.98
3939 4177 6.205784 TCCGCAAGCAATAGCAAAATATTAC 58.794 36.000 0.00 0.00 45.49 1.89
3940 4178 6.039270 TCCGCAAGCAATAGCAAAATATTACT 59.961 34.615 0.00 0.00 45.49 2.24
3941 4179 6.360681 CCGCAAGCAATAGCAAAATATTACTC 59.639 38.462 0.00 0.00 45.49 2.59
3942 4180 6.360681 CGCAAGCAATAGCAAAATATTACTCC 59.639 38.462 0.00 0.00 45.49 3.85
3943 4181 6.642540 GCAAGCAATAGCAAAATATTACTCCC 59.357 38.462 0.00 0.00 45.49 4.30
3944 4182 7.470563 GCAAGCAATAGCAAAATATTACTCCCT 60.471 37.037 0.00 0.00 45.49 4.20
3945 4183 7.751768 AGCAATAGCAAAATATTACTCCCTC 57.248 36.000 0.00 0.00 45.49 4.30
3946 4184 6.717084 AGCAATAGCAAAATATTACTCCCTCC 59.283 38.462 0.00 0.00 45.49 4.30
3947 4185 6.348540 GCAATAGCAAAATATTACTCCCTCCG 60.349 42.308 0.00 0.00 41.58 4.63
3948 4186 4.772886 AGCAAAATATTACTCCCTCCGT 57.227 40.909 0.00 0.00 0.00 4.69
3949 4187 4.704965 AGCAAAATATTACTCCCTCCGTC 58.295 43.478 0.00 0.00 0.00 4.79
3950 4188 3.813724 GCAAAATATTACTCCCTCCGTCC 59.186 47.826 0.00 0.00 0.00 4.79
3951 4189 4.386711 CAAAATATTACTCCCTCCGTCCC 58.613 47.826 0.00 0.00 0.00 4.46
3952 4190 3.339713 AATATTACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
3953 4191 3.562108 ATATTACTCCCTCCGTCCCAT 57.438 47.619 0.00 0.00 0.00 4.00
3954 4192 4.687262 ATATTACTCCCTCCGTCCCATA 57.313 45.455 0.00 0.00 0.00 2.74
3955 4193 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
3956 4194 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
3957 4195 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
3958 4196 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3959 4197 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3960 4198 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3961 4199 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3962 4200 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3963 4201 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3964 4202 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3965 4203 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3966 4204 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3967 4205 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3968 4206 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3969 4207 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
3970 4208 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
3971 4209 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
3972 4210 7.853929 CGTCCCATAATATAAGAACGTTTTTGG 59.146 37.037 13.87 5.54 0.00 3.28
3973 4211 8.895737 GTCCCATAATATAAGAACGTTTTTGGA 58.104 33.333 13.87 6.61 0.00 3.53
3974 4212 9.463902 TCCCATAATATAAGAACGTTTTTGGAA 57.536 29.630 13.87 0.35 0.00 3.53
3975 4213 9.511144 CCCATAATATAAGAACGTTTTTGGAAC 57.489 33.333 13.87 0.00 0.00 3.62
3981 4219 7.797038 ATAAGAACGTTTTTGGAACTACACT 57.203 32.000 13.87 0.00 0.00 3.55
3982 4220 8.891671 ATAAGAACGTTTTTGGAACTACACTA 57.108 30.769 13.87 0.00 0.00 2.74
3983 4221 6.839820 AGAACGTTTTTGGAACTACACTAG 57.160 37.500 0.46 0.00 0.00 2.57
3984 4222 6.343703 AGAACGTTTTTGGAACTACACTAGT 58.656 36.000 0.46 0.00 41.73 2.57
3985 4223 5.978934 ACGTTTTTGGAACTACACTAGTG 57.021 39.130 21.44 21.44 39.39 2.74
3986 4224 5.422145 ACGTTTTTGGAACTACACTAGTGT 58.578 37.500 30.13 30.13 46.87 3.55
3987 4225 5.521372 ACGTTTTTGGAACTACACTAGTGTC 59.479 40.000 31.11 16.83 43.74 3.67
3988 4226 5.521010 CGTTTTTGGAACTACACTAGTGTCA 59.479 40.000 31.11 19.43 43.74 3.58
3989 4227 6.036300 CGTTTTTGGAACTACACTAGTGTCAA 59.964 38.462 31.11 23.63 43.74 3.18
3990 4228 7.413219 CGTTTTTGGAACTACACTAGTGTCAAA 60.413 37.037 31.11 27.21 43.74 2.69
3991 4229 7.925043 TTTTGGAACTACACTAGTGTCAAAA 57.075 32.000 29.84 29.84 43.74 2.44
3992 4230 7.925043 TTTGGAACTACACTAGTGTCAAAAA 57.075 32.000 31.11 19.25 43.74 1.94
3993 4231 6.913873 TGGAACTACACTAGTGTCAAAAAC 57.086 37.500 31.11 17.92 43.74 2.43
3994 4232 6.408035 TGGAACTACACTAGTGTCAAAAACA 58.592 36.000 31.11 20.02 43.74 2.83
3995 4233 7.051623 TGGAACTACACTAGTGTCAAAAACAT 58.948 34.615 31.11 10.57 43.74 2.71
3996 4234 7.554835 TGGAACTACACTAGTGTCAAAAACATT 59.445 33.333 31.11 14.33 43.74 2.71
3997 4235 8.068380 GGAACTACACTAGTGTCAAAAACATTC 58.932 37.037 31.11 20.24 43.74 2.67
3998 4236 8.732746 AACTACACTAGTGTCAAAAACATTCT 57.267 30.769 31.11 5.44 43.74 2.40
3999 4237 8.732746 ACTACACTAGTGTCAAAAACATTCTT 57.267 30.769 31.11 4.99 43.74 2.52
4000 4238 9.826574 ACTACACTAGTGTCAAAAACATTCTTA 57.173 29.630 31.11 8.36 43.74 2.10
4060 4323 1.432270 GAGCATCTACAGCCGCAACC 61.432 60.000 0.00 0.00 0.00 3.77
4062 4325 0.179084 GCATCTACAGCCGCAACCTA 60.179 55.000 0.00 0.00 0.00 3.08
4067 4330 2.027561 TCTACAGCCGCAACCTACAAAT 60.028 45.455 0.00 0.00 0.00 2.32
4069 4332 1.960689 ACAGCCGCAACCTACAAATTT 59.039 42.857 0.00 0.00 0.00 1.82
4071 4334 1.272212 AGCCGCAACCTACAAATTTGG 59.728 47.619 21.74 7.28 0.00 3.28
4087 4507 2.178876 TTGGACCCATGCACGTCGAT 62.179 55.000 0.00 0.00 0.00 3.59
4088 4508 1.449601 GGACCCATGCACGTCGATT 60.450 57.895 0.00 0.00 0.00 3.34
4089 4509 0.179094 GGACCCATGCACGTCGATTA 60.179 55.000 0.00 0.00 0.00 1.75
4092 4512 3.585862 GACCCATGCACGTCGATTATAT 58.414 45.455 0.00 0.00 0.00 0.86
4093 4513 3.325870 ACCCATGCACGTCGATTATATG 58.674 45.455 0.00 0.00 0.00 1.78
4095 4515 4.183865 CCCATGCACGTCGATTATATGAT 58.816 43.478 0.00 0.00 0.00 2.45
4110 4530 9.855021 CGATTATATGATGTGTAGTCCATGTTA 57.145 33.333 0.00 0.00 0.00 2.41
4114 4534 3.774766 TGATGTGTAGTCCATGTTAGGCT 59.225 43.478 0.00 0.00 0.00 4.58
4179 4599 4.855340 AGATTTTCACATCCGTATTGGGT 58.145 39.130 0.00 0.00 38.76 4.51
4182 4602 2.979814 TCACATCCGTATTGGGTCAG 57.020 50.000 0.00 0.00 38.76 3.51
4184 4604 0.908910 ACATCCGTATTGGGTCAGCA 59.091 50.000 0.00 0.00 38.76 4.41
4192 4612 1.915141 ATTGGGTCAGCAGGTTTCAG 58.085 50.000 0.00 0.00 0.00 3.02
4204 4624 4.072131 GCAGGTTTCAGATGTTTAGTCCA 58.928 43.478 0.00 0.00 0.00 4.02
4209 4629 5.181433 GGTTTCAGATGTTTAGTCCAACCTC 59.819 44.000 0.00 0.00 0.00 3.85
4232 4652 1.066303 CACATGAGGAGCTAGTCGACC 59.934 57.143 13.01 0.00 0.00 4.79
4240 4664 1.299240 GCTAGTCGACCGGCTTAGC 60.299 63.158 13.01 14.44 0.00 3.09
4253 4677 2.036098 TTAGCCGGGTCGTCCAGA 59.964 61.111 10.79 0.00 34.36 3.86
4254 4678 1.601419 CTTAGCCGGGTCGTCCAGAA 61.601 60.000 10.79 0.00 34.36 3.02
4291 4715 6.150976 CACTCATCATTGCACCCTTAGTTAAA 59.849 38.462 0.00 0.00 0.00 1.52
4298 4722 7.450014 TCATTGCACCCTTAGTTAAAAAGATGA 59.550 33.333 0.00 0.00 0.00 2.92
4300 4724 7.775053 TGCACCCTTAGTTAAAAAGATGAAT 57.225 32.000 1.31 0.00 0.00 2.57
4302 4726 8.087750 TGCACCCTTAGTTAAAAAGATGAATTG 58.912 33.333 1.31 0.00 0.00 2.32
4320 4744 9.736023 GATGAATTGTTACCAATAATGTTCTCC 57.264 33.333 0.00 0.00 40.42 3.71
4340 4764 6.173339 TCTCCGCTTATCACAAAGAAGATTT 58.827 36.000 0.00 0.00 0.00 2.17
4352 4776 9.739276 TCACAAAGAAGATTTATAGTCATGGTT 57.261 29.630 0.00 0.00 0.00 3.67
4353 4777 9.994432 CACAAAGAAGATTTATAGTCATGGTTC 57.006 33.333 0.00 0.00 0.00 3.62
4355 4779 9.994432 CAAAGAAGATTTATAGTCATGGTTCAC 57.006 33.333 0.00 0.00 0.00 3.18
4356 4780 9.739276 AAAGAAGATTTATAGTCATGGTTCACA 57.261 29.630 0.00 0.00 0.00 3.58
4357 4781 9.739276 AAGAAGATTTATAGTCATGGTTCACAA 57.261 29.630 0.00 0.00 0.00 3.33
4358 4782 9.739276 AGAAGATTTATAGTCATGGTTCACAAA 57.261 29.630 0.00 0.00 0.00 2.83
4360 4784 7.974675 AGATTTATAGTCATGGTTCACAAACG 58.025 34.615 0.00 0.00 36.16 3.60
4361 4785 6.489127 TTTATAGTCATGGTTCACAAACGG 57.511 37.500 0.00 0.00 36.16 4.44
4395 4828 2.287547 TGCACGGCTCTTTTTGAATCAC 60.288 45.455 0.00 0.00 0.00 3.06
4405 4838 4.975502 TCTTTTTGAATCACAATGTGTCGC 59.024 37.500 13.55 4.47 38.36 5.19
4406 4839 2.987413 TTGAATCACAATGTGTCGCC 57.013 45.000 13.55 2.61 34.79 5.54
4407 4840 0.795698 TGAATCACAATGTGTCGCCG 59.204 50.000 13.55 0.00 34.79 6.46
4408 4841 0.521242 GAATCACAATGTGTCGCCGC 60.521 55.000 13.55 0.00 34.79 6.53
4409 4842 2.239341 AATCACAATGTGTCGCCGCG 62.239 55.000 13.55 6.39 34.79 6.46
4439 4872 3.506096 CACCGCCTGCATCTGCTG 61.506 66.667 3.53 2.92 42.66 4.41
4440 4873 4.025858 ACCGCCTGCATCTGCTGT 62.026 61.111 3.53 0.00 42.66 4.40
4441 4874 3.200593 CCGCCTGCATCTGCTGTC 61.201 66.667 3.53 0.00 42.66 3.51
4442 4875 2.125229 CGCCTGCATCTGCTGTCT 60.125 61.111 3.53 0.00 42.66 3.41
4443 4876 1.744368 CGCCTGCATCTGCTGTCTT 60.744 57.895 3.53 0.00 42.66 3.01
4444 4877 1.801332 GCCTGCATCTGCTGTCTTG 59.199 57.895 3.53 0.00 42.66 3.02
4445 4878 1.801332 CCTGCATCTGCTGTCTTGC 59.199 57.895 3.53 8.26 42.66 4.01
4446 4879 0.677098 CCTGCATCTGCTGTCTTGCT 60.677 55.000 3.53 0.00 42.66 3.91
4447 4880 0.448197 CTGCATCTGCTGTCTTGCTG 59.552 55.000 3.53 10.62 42.66 4.41
4448 4881 0.958876 TGCATCTGCTGTCTTGCTGG 60.959 55.000 3.53 0.00 42.66 4.85
4449 4882 1.654954 GCATCTGCTGTCTTGCTGGG 61.655 60.000 0.00 0.00 38.21 4.45
4450 4883 1.378250 ATCTGCTGTCTTGCTGGGC 60.378 57.895 0.00 0.00 33.58 5.36
4451 4884 1.849975 ATCTGCTGTCTTGCTGGGCT 61.850 55.000 0.00 0.00 33.58 5.19
4452 4885 2.033141 TGCTGTCTTGCTGGGCTC 59.967 61.111 0.00 0.00 0.00 4.70
4453 4886 2.749441 GCTGTCTTGCTGGGCTCC 60.749 66.667 0.00 0.00 0.00 4.70
4454 4887 2.435586 CTGTCTTGCTGGGCTCCG 60.436 66.667 0.00 0.00 0.00 4.63
4455 4888 3.965539 CTGTCTTGCTGGGCTCCGG 62.966 68.421 0.00 0.00 0.00 5.14
4490 4923 3.770040 CGGCCCGTGTCATGGAGA 61.770 66.667 13.05 0.00 0.00 3.71
4491 4924 2.911143 GGCCCGTGTCATGGAGAT 59.089 61.111 13.05 0.00 0.00 2.75
4492 4925 1.524621 GGCCCGTGTCATGGAGATG 60.525 63.158 13.05 0.00 0.00 2.90
4493 4926 2.182842 GCCCGTGTCATGGAGATGC 61.183 63.158 13.05 3.54 0.00 3.91
4494 4927 1.221566 CCCGTGTCATGGAGATGCA 59.778 57.895 13.05 0.00 0.00 3.96
4495 4928 0.812811 CCCGTGTCATGGAGATGCAG 60.813 60.000 13.05 0.00 0.00 4.41
4496 4929 1.434622 CCGTGTCATGGAGATGCAGC 61.435 60.000 4.96 0.00 0.00 5.25
4497 4930 1.434622 CGTGTCATGGAGATGCAGCC 61.435 60.000 0.00 0.00 0.00 4.85
4498 4931 0.107312 GTGTCATGGAGATGCAGCCT 60.107 55.000 0.00 0.00 0.00 4.58
4499 4932 0.179702 TGTCATGGAGATGCAGCCTC 59.820 55.000 0.00 4.20 0.00 4.70
4500 4933 0.469070 GTCATGGAGATGCAGCCTCT 59.531 55.000 15.70 0.00 0.00 3.69
4501 4934 0.468648 TCATGGAGATGCAGCCTCTG 59.531 55.000 4.72 9.28 34.12 3.35
4510 4943 2.435586 CAGCCTCTGCCGACCTTG 60.436 66.667 0.00 0.00 38.69 3.61
4511 4944 4.400961 AGCCTCTGCCGACCTTGC 62.401 66.667 0.00 0.00 38.69 4.01
4528 4961 4.379243 CCGCTGGAGGCTGAACGT 62.379 66.667 0.00 0.00 39.13 3.99
4529 4962 3.114616 CGCTGGAGGCTGAACGTG 61.115 66.667 0.00 0.00 39.13 4.49
4530 4963 2.743928 GCTGGAGGCTGAACGTGG 60.744 66.667 0.00 0.00 38.06 4.94
4531 4964 2.046892 CTGGAGGCTGAACGTGGG 60.047 66.667 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.228206 ACAGTCATAGATAGTTCCTGGAAGATA 58.772 37.037 9.92 6.57 34.07 1.98
1 2 7.072562 ACAGTCATAGATAGTTCCTGGAAGAT 58.927 38.462 9.92 6.42 34.07 2.40
2 3 6.436027 ACAGTCATAGATAGTTCCTGGAAGA 58.564 40.000 9.92 1.06 34.07 2.87
3 4 6.723298 ACAGTCATAGATAGTTCCTGGAAG 57.277 41.667 9.92 0.00 0.00 3.46
4 5 6.440647 ACAACAGTCATAGATAGTTCCTGGAA 59.559 38.462 4.68 4.68 0.00 3.53
5 6 5.958380 ACAACAGTCATAGATAGTTCCTGGA 59.042 40.000 0.00 0.00 0.00 3.86
6 7 6.227298 ACAACAGTCATAGATAGTTCCTGG 57.773 41.667 0.00 0.00 0.00 4.45
7 8 7.323420 TGAACAACAGTCATAGATAGTTCCTG 58.677 38.462 0.00 0.00 34.73 3.86
8 9 7.482169 TGAACAACAGTCATAGATAGTTCCT 57.518 36.000 0.00 0.00 34.73 3.36
9 10 8.547967 TTTGAACAACAGTCATAGATAGTTCC 57.452 34.615 0.00 0.00 34.73 3.62
19 20 9.252962 GAGATTGAAAATTTGAACAACAGTCAT 57.747 29.630 0.00 0.00 0.00 3.06
20 21 7.431960 CGAGATTGAAAATTTGAACAACAGTCA 59.568 33.333 0.00 0.00 0.00 3.41
21 22 7.096477 CCGAGATTGAAAATTTGAACAACAGTC 60.096 37.037 0.00 0.00 0.00 3.51
22 23 6.697019 CCGAGATTGAAAATTTGAACAACAGT 59.303 34.615 0.00 0.00 0.00 3.55
23 24 6.917477 TCCGAGATTGAAAATTTGAACAACAG 59.083 34.615 0.00 0.00 0.00 3.16
24 25 6.695278 GTCCGAGATTGAAAATTTGAACAACA 59.305 34.615 0.00 0.00 0.00 3.33
25 26 6.695278 TGTCCGAGATTGAAAATTTGAACAAC 59.305 34.615 0.00 0.00 0.00 3.32
26 27 6.695278 GTGTCCGAGATTGAAAATTTGAACAA 59.305 34.615 0.00 0.00 0.00 2.83
27 28 6.039270 AGTGTCCGAGATTGAAAATTTGAACA 59.961 34.615 0.00 0.00 0.00 3.18
28 29 6.438763 AGTGTCCGAGATTGAAAATTTGAAC 58.561 36.000 0.00 0.00 0.00 3.18
29 30 6.486657 AGAGTGTCCGAGATTGAAAATTTGAA 59.513 34.615 0.00 0.00 0.00 2.69
30 31 5.997746 AGAGTGTCCGAGATTGAAAATTTGA 59.002 36.000 0.00 0.00 0.00 2.69
31 32 6.246420 AGAGTGTCCGAGATTGAAAATTTG 57.754 37.500 0.00 0.00 0.00 2.32
32 33 7.332182 GTCTAGAGTGTCCGAGATTGAAAATTT 59.668 37.037 0.00 0.00 0.00 1.82
33 34 6.814146 GTCTAGAGTGTCCGAGATTGAAAATT 59.186 38.462 0.00 0.00 0.00 1.82
34 35 6.153680 AGTCTAGAGTGTCCGAGATTGAAAAT 59.846 38.462 0.00 0.00 0.00 1.82
35 36 5.477291 AGTCTAGAGTGTCCGAGATTGAAAA 59.523 40.000 0.00 0.00 0.00 2.29
36 37 5.010933 AGTCTAGAGTGTCCGAGATTGAAA 58.989 41.667 0.00 0.00 0.00 2.69
37 38 4.590918 AGTCTAGAGTGTCCGAGATTGAA 58.409 43.478 0.00 0.00 0.00 2.69
38 39 4.223556 AGTCTAGAGTGTCCGAGATTGA 57.776 45.455 0.00 0.00 0.00 2.57
39 40 4.974368 AAGTCTAGAGTGTCCGAGATTG 57.026 45.455 0.00 0.00 0.00 2.67
40 41 6.181908 ACTTAAGTCTAGAGTGTCCGAGATT 58.818 40.000 1.12 0.00 0.00 2.40
41 42 5.747342 ACTTAAGTCTAGAGTGTCCGAGAT 58.253 41.667 1.12 0.00 0.00 2.75
42 43 5.163281 ACTTAAGTCTAGAGTGTCCGAGA 57.837 43.478 1.12 0.00 0.00 4.04
43 44 5.883503 AACTTAAGTCTAGAGTGTCCGAG 57.116 43.478 8.95 0.00 0.00 4.63
44 45 6.233434 TGTAACTTAAGTCTAGAGTGTCCGA 58.767 40.000 8.95 0.00 0.00 4.55
45 46 6.492007 TGTAACTTAAGTCTAGAGTGTCCG 57.508 41.667 8.95 0.00 0.00 4.79
46 47 7.808856 CAGTTGTAACTTAAGTCTAGAGTGTCC 59.191 40.741 8.95 0.00 37.08 4.02
47 48 8.566260 TCAGTTGTAACTTAAGTCTAGAGTGTC 58.434 37.037 8.95 0.00 37.08 3.67
48 49 8.461249 TCAGTTGTAACTTAAGTCTAGAGTGT 57.539 34.615 8.95 0.00 37.08 3.55
49 50 8.024285 CCTCAGTTGTAACTTAAGTCTAGAGTG 58.976 40.741 8.95 9.03 37.08 3.51
50 51 7.177041 CCCTCAGTTGTAACTTAAGTCTAGAGT 59.823 40.741 8.95 0.00 37.08 3.24
51 52 7.540299 CCCTCAGTTGTAACTTAAGTCTAGAG 58.460 42.308 8.95 9.24 37.08 2.43
52 53 6.071503 GCCCTCAGTTGTAACTTAAGTCTAGA 60.072 42.308 8.95 0.14 37.08 2.43
53 54 6.100668 GCCCTCAGTTGTAACTTAAGTCTAG 58.899 44.000 8.95 1.05 37.08 2.43
54 55 5.541101 TGCCCTCAGTTGTAACTTAAGTCTA 59.459 40.000 8.95 1.31 37.08 2.59
55 56 4.347000 TGCCCTCAGTTGTAACTTAAGTCT 59.653 41.667 8.95 0.00 37.08 3.24
56 57 4.638304 TGCCCTCAGTTGTAACTTAAGTC 58.362 43.478 8.95 0.00 37.08 3.01
57 58 4.699925 TGCCCTCAGTTGTAACTTAAGT 57.300 40.909 1.12 1.12 37.08 2.24
58 59 6.381801 CAAATGCCCTCAGTTGTAACTTAAG 58.618 40.000 0.00 0.00 41.73 1.85
59 60 5.242838 CCAAATGCCCTCAGTTGTAACTTAA 59.757 40.000 5.05 0.00 44.23 1.85
60 61 4.764823 CCAAATGCCCTCAGTTGTAACTTA 59.235 41.667 5.05 0.00 44.23 2.24
61 62 3.573967 CCAAATGCCCTCAGTTGTAACTT 59.426 43.478 5.05 0.00 44.23 2.66
62 63 3.157087 CCAAATGCCCTCAGTTGTAACT 58.843 45.455 5.05 0.00 44.23 2.24
63 64 2.890945 ACCAAATGCCCTCAGTTGTAAC 59.109 45.455 5.05 0.00 44.23 2.50
64 65 2.890311 CACCAAATGCCCTCAGTTGTAA 59.110 45.455 5.05 0.00 44.23 2.41
65 66 2.158534 ACACCAAATGCCCTCAGTTGTA 60.159 45.455 5.05 0.00 44.23 2.41
66 67 1.331214 CACCAAATGCCCTCAGTTGT 58.669 50.000 5.05 0.00 44.23 3.32
67 68 1.331214 ACACCAAATGCCCTCAGTTG 58.669 50.000 0.00 0.00 45.02 3.16
68 69 2.086610 AACACCAAATGCCCTCAGTT 57.913 45.000 0.00 0.00 0.00 3.16
69 70 1.963515 GAAACACCAAATGCCCTCAGT 59.036 47.619 0.00 0.00 0.00 3.41
70 71 2.229784 GAGAAACACCAAATGCCCTCAG 59.770 50.000 0.00 0.00 0.00 3.35
71 72 2.238521 GAGAAACACCAAATGCCCTCA 58.761 47.619 0.00 0.00 0.00 3.86
72 73 1.200020 CGAGAAACACCAAATGCCCTC 59.800 52.381 0.00 0.00 0.00 4.30
73 74 1.202879 TCGAGAAACACCAAATGCCCT 60.203 47.619 0.00 0.00 0.00 5.19
74 75 1.243902 TCGAGAAACACCAAATGCCC 58.756 50.000 0.00 0.00 0.00 5.36
75 76 2.552315 TCTTCGAGAAACACCAAATGCC 59.448 45.455 0.00 0.00 0.00 4.40
76 77 3.896648 TCTTCGAGAAACACCAAATGC 57.103 42.857 0.00 0.00 0.00 3.56
101 102 9.893305 CTAGAAACGTCAAAGTGGATTTTAAAT 57.107 29.630 0.00 0.00 0.00 1.40
102 103 8.895737 ACTAGAAACGTCAAAGTGGATTTTAAA 58.104 29.630 0.00 0.00 0.00 1.52
103 104 8.441312 ACTAGAAACGTCAAAGTGGATTTTAA 57.559 30.769 0.00 0.00 0.00 1.52
104 105 7.095940 CGACTAGAAACGTCAAAGTGGATTTTA 60.096 37.037 0.00 0.00 0.00 1.52
105 106 6.292703 CGACTAGAAACGTCAAAGTGGATTTT 60.293 38.462 0.00 0.00 0.00 1.82
106 107 5.176958 CGACTAGAAACGTCAAAGTGGATTT 59.823 40.000 0.00 0.00 0.00 2.17
107 108 4.684703 CGACTAGAAACGTCAAAGTGGATT 59.315 41.667 0.00 0.00 0.00 3.01
108 109 4.022589 TCGACTAGAAACGTCAAAGTGGAT 60.023 41.667 0.00 0.00 28.52 3.41
109 110 3.316029 TCGACTAGAAACGTCAAAGTGGA 59.684 43.478 0.00 0.00 29.95 4.02
110 111 3.424529 GTCGACTAGAAACGTCAAAGTGG 59.575 47.826 8.70 0.00 0.00 4.00
111 112 4.039703 TGTCGACTAGAAACGTCAAAGTG 58.960 43.478 17.92 0.00 0.00 3.16
112 113 4.040376 GTGTCGACTAGAAACGTCAAAGT 58.960 43.478 17.92 0.00 31.07 2.66
113 114 3.424529 GGTGTCGACTAGAAACGTCAAAG 59.575 47.826 17.92 0.00 37.98 2.77
114 115 3.067180 AGGTGTCGACTAGAAACGTCAAA 59.933 43.478 17.92 0.00 37.98 2.69
115 116 2.620115 AGGTGTCGACTAGAAACGTCAA 59.380 45.455 17.92 0.00 37.98 3.18
116 117 2.224606 AGGTGTCGACTAGAAACGTCA 58.775 47.619 17.92 0.98 37.98 4.35
117 118 2.985406 AGGTGTCGACTAGAAACGTC 57.015 50.000 17.92 0.00 37.98 4.34
118 119 3.722728 AAAGGTGTCGACTAGAAACGT 57.277 42.857 17.92 4.74 37.98 3.99
119 120 3.427863 GGAAAAGGTGTCGACTAGAAACG 59.572 47.826 17.92 0.00 37.98 3.60
120 121 4.210746 GTGGAAAAGGTGTCGACTAGAAAC 59.789 45.833 17.92 5.74 36.33 2.78
121 122 4.100498 AGTGGAAAAGGTGTCGACTAGAAA 59.900 41.667 17.92 0.00 32.94 2.52
122 123 3.640029 AGTGGAAAAGGTGTCGACTAGAA 59.360 43.478 17.92 0.00 32.94 2.10
123 124 3.005472 CAGTGGAAAAGGTGTCGACTAGA 59.995 47.826 17.92 0.00 32.94 2.43
124 125 3.243771 ACAGTGGAAAAGGTGTCGACTAG 60.244 47.826 17.92 0.00 32.94 2.57
125 126 2.696707 ACAGTGGAAAAGGTGTCGACTA 59.303 45.455 17.92 0.00 32.94 2.59
126 127 1.485066 ACAGTGGAAAAGGTGTCGACT 59.515 47.619 17.92 0.00 34.77 4.18
127 128 1.597663 CACAGTGGAAAAGGTGTCGAC 59.402 52.381 9.11 9.11 0.00 4.20
128 129 1.483004 TCACAGTGGAAAAGGTGTCGA 59.517 47.619 0.00 0.00 33.17 4.20
129 130 1.597663 GTCACAGTGGAAAAGGTGTCG 59.402 52.381 0.00 0.00 33.17 4.35
130 131 1.597663 CGTCACAGTGGAAAAGGTGTC 59.402 52.381 0.00 0.00 33.17 3.67
131 132 1.065709 ACGTCACAGTGGAAAAGGTGT 60.066 47.619 0.00 0.00 33.17 4.16
132 133 1.663695 ACGTCACAGTGGAAAAGGTG 58.336 50.000 0.00 0.00 0.00 4.00
133 134 2.413310 AACGTCACAGTGGAAAAGGT 57.587 45.000 0.00 0.00 0.00 3.50
134 135 2.223479 CCAAACGTCACAGTGGAAAAGG 60.223 50.000 0.00 0.00 32.54 3.11
135 136 2.794631 GCCAAACGTCACAGTGGAAAAG 60.795 50.000 0.00 0.00 32.54 2.27
136 137 1.133407 GCCAAACGTCACAGTGGAAAA 59.867 47.619 0.00 0.00 32.54 2.29
137 138 0.736053 GCCAAACGTCACAGTGGAAA 59.264 50.000 0.00 0.00 32.54 3.13
138 139 1.433053 CGCCAAACGTCACAGTGGAA 61.433 55.000 0.00 0.00 36.87 3.53
139 140 1.885388 CGCCAAACGTCACAGTGGA 60.885 57.895 0.00 0.00 36.87 4.02
140 141 2.631428 CGCCAAACGTCACAGTGG 59.369 61.111 0.00 0.00 36.87 4.00
141 142 2.052237 GCGCCAAACGTCACAGTG 60.052 61.111 0.00 0.00 46.11 3.66
162 163 4.498513 CCCTTTTCCCTTGTAACACGAAAC 60.499 45.833 0.00 0.00 0.00 2.78
184 185 3.383620 TGTGGCATGAAACATGTTTCC 57.616 42.857 36.35 26.46 46.15 3.13
254 255 1.118965 TTGGTGAGTTCCGAGCTCCA 61.119 55.000 8.47 0.00 32.31 3.86
391 404 5.828859 TGGAAGGCTAGAGAAGTGTATACTC 59.171 44.000 4.17 0.09 35.69 2.59
418 431 0.863144 TTCGCGTTTGTTGTCTAGCC 59.137 50.000 5.77 0.00 0.00 3.93
550 563 4.735358 GAACCCGGTTCCCCTGGC 62.735 72.222 18.32 0.00 38.65 4.85
846 862 2.026729 CCTGTCCTTCCCTTTCTTCCTC 60.027 54.545 0.00 0.00 0.00 3.71
969 991 3.991051 ACCACGCAGTCCACGGAG 61.991 66.667 0.00 0.00 41.61 4.63
1066 1088 1.879380 CAACAGATCCGAACAAGCCAA 59.121 47.619 0.00 0.00 0.00 4.52
1076 1098 1.012086 CATGAGCACCAACAGATCCG 58.988 55.000 0.00 0.00 0.00 4.18
1086 1108 3.127533 GGACACGCCATGAGCACC 61.128 66.667 0.00 0.00 44.04 5.01
1098 1120 3.270877 AGCAATCCTACGAAATGGACAC 58.729 45.455 0.00 0.00 34.90 3.67
1283 1310 3.363871 GGGCGCAAATGTGAAATTGAAAC 60.364 43.478 10.83 0.00 0.00 2.78
1302 1329 1.135286 CGAAGCTGGATTTTGAAGGGC 60.135 52.381 0.00 0.00 0.00 5.19
1303 1330 2.927553 CGAAGCTGGATTTTGAAGGG 57.072 50.000 0.00 0.00 0.00 3.95
1318 1345 6.390987 AAAAGAGTAATCGTAACAGCGAAG 57.609 37.500 0.00 0.00 44.38 3.79
1319 1346 6.034256 GCTAAAAGAGTAATCGTAACAGCGAA 59.966 38.462 0.00 0.00 44.38 4.70
1320 1347 5.514204 GCTAAAAGAGTAATCGTAACAGCGA 59.486 40.000 0.00 0.00 45.32 4.93
1321 1348 5.552104 CGCTAAAAGAGTAATCGTAACAGCG 60.552 44.000 11.87 11.87 40.60 5.18
1322 1349 5.514204 TCGCTAAAAGAGTAATCGTAACAGC 59.486 40.000 0.00 0.00 0.00 4.40
1323 1350 7.681125 ATCGCTAAAAGAGTAATCGTAACAG 57.319 36.000 0.00 0.00 0.00 3.16
1324 1351 9.740239 ATAATCGCTAAAAGAGTAATCGTAACA 57.260 29.630 0.00 0.00 0.00 2.41
1325 1352 9.990888 CATAATCGCTAAAAGAGTAATCGTAAC 57.009 33.333 0.00 0.00 0.00 2.50
1326 1353 9.955208 TCATAATCGCTAAAAGAGTAATCGTAA 57.045 29.630 0.00 0.00 0.00 3.18
1327 1354 9.608617 CTCATAATCGCTAAAAGAGTAATCGTA 57.391 33.333 0.00 0.00 0.00 3.43
1328 1355 7.115095 GCTCATAATCGCTAAAAGAGTAATCGT 59.885 37.037 0.00 0.00 0.00 3.73
1329 1356 7.114953 TGCTCATAATCGCTAAAAGAGTAATCG 59.885 37.037 0.00 0.00 0.00 3.34
1330 1357 8.299262 TGCTCATAATCGCTAAAAGAGTAATC 57.701 34.615 0.00 0.00 0.00 1.75
1331 1358 7.095439 GCTGCTCATAATCGCTAAAAGAGTAAT 60.095 37.037 0.00 0.00 0.00 1.89
1332 1359 6.201044 GCTGCTCATAATCGCTAAAAGAGTAA 59.799 38.462 0.00 0.00 0.00 2.24
1333 1360 5.692204 GCTGCTCATAATCGCTAAAAGAGTA 59.308 40.000 0.00 0.00 0.00 2.59
1334 1361 4.509600 GCTGCTCATAATCGCTAAAAGAGT 59.490 41.667 0.00 0.00 0.00 3.24
1335 1362 4.084118 GGCTGCTCATAATCGCTAAAAGAG 60.084 45.833 0.00 0.00 0.00 2.85
1336 1363 3.809832 GGCTGCTCATAATCGCTAAAAGA 59.190 43.478 0.00 0.00 0.00 2.52
1337 1364 3.812053 AGGCTGCTCATAATCGCTAAAAG 59.188 43.478 0.00 0.00 0.00 2.27
1338 1365 3.808728 AGGCTGCTCATAATCGCTAAAA 58.191 40.909 0.00 0.00 0.00 1.52
1339 1366 3.475566 AGGCTGCTCATAATCGCTAAA 57.524 42.857 0.00 0.00 0.00 1.85
1340 1367 3.133691 CAAGGCTGCTCATAATCGCTAA 58.866 45.455 0.00 0.00 0.00 3.09
1341 1368 2.365293 TCAAGGCTGCTCATAATCGCTA 59.635 45.455 0.00 0.00 0.00 4.26
1342 1369 1.139654 TCAAGGCTGCTCATAATCGCT 59.860 47.619 0.00 0.00 0.00 4.93
1343 1370 1.586422 TCAAGGCTGCTCATAATCGC 58.414 50.000 0.00 0.00 0.00 4.58
1344 1371 3.608707 GCATTCAAGGCTGCTCATAATCG 60.609 47.826 0.00 0.00 35.49 3.34
1345 1372 3.608707 CGCATTCAAGGCTGCTCATAATC 60.609 47.826 0.00 0.00 36.23 1.75
1346 1373 2.292569 CGCATTCAAGGCTGCTCATAAT 59.707 45.455 0.00 0.00 36.23 1.28
1347 1374 1.672363 CGCATTCAAGGCTGCTCATAA 59.328 47.619 0.00 0.00 36.23 1.90
1348 1375 1.134431 TCGCATTCAAGGCTGCTCATA 60.134 47.619 0.00 0.00 36.23 2.15
1349 1376 0.393402 TCGCATTCAAGGCTGCTCAT 60.393 50.000 0.00 0.00 36.23 2.90
1350 1377 0.393402 ATCGCATTCAAGGCTGCTCA 60.393 50.000 0.00 0.00 36.23 4.26
1351 1378 0.029035 CATCGCATTCAAGGCTGCTC 59.971 55.000 0.00 0.00 36.23 4.26
1352 1379 0.679002 ACATCGCATTCAAGGCTGCT 60.679 50.000 0.00 0.00 36.23 4.24
1353 1380 0.171903 AACATCGCATTCAAGGCTGC 59.828 50.000 0.00 0.00 35.02 5.25
1354 1381 1.741706 AGAACATCGCATTCAAGGCTG 59.258 47.619 0.00 0.00 0.00 4.85
1355 1382 1.741706 CAGAACATCGCATTCAAGGCT 59.258 47.619 0.00 0.00 0.00 4.58
1367 1395 7.362662 TGTTTCAGATGCTTAAACAGAACATC 58.637 34.615 3.54 0.00 37.99 3.06
1399 1427 1.346395 AGCATCAAACGTGGTAGTGGA 59.654 47.619 0.00 0.00 0.00 4.02
1400 1428 1.808411 AGCATCAAACGTGGTAGTGG 58.192 50.000 0.00 0.00 0.00 4.00
1427 1455 1.226746 GAGAATTCGGTATTGCCCCG 58.773 55.000 0.00 0.00 46.83 5.73
1428 1456 1.605753 GGAGAATTCGGTATTGCCCC 58.394 55.000 0.00 0.00 0.00 5.80
1429 1457 1.226746 CGGAGAATTCGGTATTGCCC 58.773 55.000 0.00 0.00 29.33 5.36
1430 1458 1.949465 ACGGAGAATTCGGTATTGCC 58.051 50.000 0.00 0.00 45.64 4.52
1431 1459 3.120649 GCATACGGAGAATTCGGTATTGC 60.121 47.826 13.63 15.01 45.64 3.56
1432 1460 4.055360 TGCATACGGAGAATTCGGTATTG 58.945 43.478 13.63 11.32 45.64 1.90
1433 1461 4.330944 TGCATACGGAGAATTCGGTATT 57.669 40.909 13.63 0.00 45.64 1.89
1434 1462 4.202223 ACTTGCATACGGAGAATTCGGTAT 60.202 41.667 11.60 11.60 45.64 2.73
1435 1463 3.131577 ACTTGCATACGGAGAATTCGGTA 59.868 43.478 0.00 4.84 45.64 4.02
1467 1503 0.607217 CTGGCTGGCAGAACATGTCA 60.607 55.000 25.34 0.00 42.61 3.58
1469 1505 1.975407 GCTGGCTGGCAGAACATGT 60.975 57.895 32.31 0.00 0.00 3.21
1842 1918 0.539986 ACGCACGGGAATCTTATGGT 59.460 50.000 0.00 0.00 0.00 3.55
1866 1942 5.437060 ACAACCCTGGCTACACTATTATTG 58.563 41.667 0.00 0.00 0.00 1.90
1871 1950 2.546899 TGACAACCCTGGCTACACTAT 58.453 47.619 0.00 0.00 0.00 2.12
1876 1958 1.812571 CACAATGACAACCCTGGCTAC 59.187 52.381 0.00 0.00 0.00 3.58
1910 1992 0.690762 AGGGGTTACAGCACGAACAT 59.309 50.000 0.00 0.00 0.00 2.71
1911 1993 0.250124 CAGGGGTTACAGCACGAACA 60.250 55.000 0.00 0.00 0.00 3.18
1912 1994 0.953960 CCAGGGGTTACAGCACGAAC 60.954 60.000 0.00 0.00 0.00 3.95
1914 1996 2.589157 CCCAGGGGTTACAGCACGA 61.589 63.158 0.00 0.00 0.00 4.35
1915 1997 2.046314 CCCAGGGGTTACAGCACG 60.046 66.667 0.00 0.00 0.00 5.34
1916 1998 2.361230 GCCCAGGGGTTACAGCAC 60.361 66.667 7.91 0.00 37.65 4.40
1917 1999 4.028490 CGCCCAGGGGTTACAGCA 62.028 66.667 7.91 0.00 37.65 4.41
1918 2000 3.562732 AACGCCCAGGGGTTACAGC 62.563 63.158 16.72 0.00 46.88 4.40
2091 2177 0.512952 GCAAGTGTTGGTAGTCTGCG 59.487 55.000 0.00 0.00 0.00 5.18
2173 2291 5.116180 TCCGAAACAGCATATCTAGTTTGG 58.884 41.667 0.00 0.00 34.62 3.28
2181 2299 1.869767 CCAGCTCCGAAACAGCATATC 59.130 52.381 0.00 0.00 39.56 1.63
2182 2300 1.475751 CCCAGCTCCGAAACAGCATAT 60.476 52.381 0.00 0.00 39.56 1.78
2183 2301 0.107703 CCCAGCTCCGAAACAGCATA 60.108 55.000 0.00 0.00 39.56 3.14
2184 2302 1.377725 CCCAGCTCCGAAACAGCAT 60.378 57.895 0.00 0.00 39.56 3.79
2249 2371 9.918630 AAGAGAATGAATGAACAAATAAAGTGG 57.081 29.630 0.00 0.00 0.00 4.00
2260 2382 6.401796 GCATGCCAAAAAGAGAATGAATGAAC 60.402 38.462 6.36 0.00 0.00 3.18
2311 2433 1.306454 AATGCCCATCCCCATTCCCT 61.306 55.000 0.00 0.00 0.00 4.20
2396 2521 0.964358 CCCCCTGAGCAGCAAAAGAG 60.964 60.000 0.00 0.00 0.00 2.85
2493 2627 1.127343 GATAAGAGCCCTCACCAGCT 58.873 55.000 0.00 0.00 43.55 4.24
2530 2664 3.732048 GGGACAAGGAAACCCTCAATA 57.268 47.619 0.00 0.00 40.39 1.90
2537 2674 3.055312 CCTACTACAGGGACAAGGAAACC 60.055 52.174 0.00 0.00 41.26 3.27
2542 2679 1.568504 TGCCTACTACAGGGACAAGG 58.431 55.000 0.00 0.00 45.66 3.61
2556 2693 6.931281 GTCTGCATATCTTTGATAGTTGCCTA 59.069 38.462 9.34 0.00 0.00 3.93
2557 2694 5.762218 GTCTGCATATCTTTGATAGTTGCCT 59.238 40.000 9.34 0.00 0.00 4.75
2558 2695 5.333645 CGTCTGCATATCTTTGATAGTTGCC 60.334 44.000 9.34 0.00 0.00 4.52
2581 2725 0.900647 TTAAATTGCCCCACCCACCG 60.901 55.000 0.00 0.00 0.00 4.94
2604 2748 6.149474 CCAACCAATTAGGACTACAACTTGAG 59.851 42.308 0.00 0.00 41.22 3.02
2605 2749 6.001460 CCAACCAATTAGGACTACAACTTGA 58.999 40.000 0.00 0.00 41.22 3.02
2606 2750 5.768164 ACCAACCAATTAGGACTACAACTTG 59.232 40.000 1.54 0.00 41.22 3.16
2607 2751 5.948842 ACCAACCAATTAGGACTACAACTT 58.051 37.500 1.54 0.00 41.22 2.66
2611 2755 4.351407 TCCAACCAACCAATTAGGACTACA 59.649 41.667 1.54 0.00 41.22 2.74
2613 2757 4.018779 CCTCCAACCAACCAATTAGGACTA 60.019 45.833 1.54 0.00 41.22 2.59
2614 2758 3.245264 CCTCCAACCAACCAATTAGGACT 60.245 47.826 1.54 0.00 41.22 3.85
2643 2797 1.428912 TCAAGGGCAAGACCAGGAAAT 59.571 47.619 0.00 0.00 42.05 2.17
2686 2840 0.482446 TCAGGTGGGTGGCTCATTTT 59.518 50.000 0.00 0.00 0.00 1.82
2689 2843 1.136329 ACTTCAGGTGGGTGGCTCAT 61.136 55.000 0.00 0.00 0.00 2.90
2694 2848 2.844348 AGGTTATACTTCAGGTGGGTGG 59.156 50.000 0.00 0.00 0.00 4.61
2695 2849 4.569719 AAGGTTATACTTCAGGTGGGTG 57.430 45.455 0.00 0.00 0.00 4.61
2697 2851 6.376299 GGTTTTAAGGTTATACTTCAGGTGGG 59.624 42.308 0.00 0.00 32.02 4.61
2698 2852 7.120726 CAGGTTTTAAGGTTATACTTCAGGTGG 59.879 40.741 0.00 0.00 32.02 4.61
2699 2853 7.361799 GCAGGTTTTAAGGTTATACTTCAGGTG 60.362 40.741 0.00 0.00 32.02 4.00
2725 2902 7.545965 ACGATTTTCTTTCCAGACTACATACAG 59.454 37.037 0.00 0.00 0.00 2.74
2787 2972 3.201266 TCACTTTTAGGCCCACGGATAAT 59.799 43.478 0.00 0.00 0.00 1.28
2820 3005 6.488006 AGAAGTGAGCATTGTGTAAACATCTT 59.512 34.615 0.00 0.00 0.00 2.40
2938 3138 0.320374 TCGAAACTGGTACCCTGCTG 59.680 55.000 10.07 0.00 0.00 4.41
3057 3259 4.798387 TCATAAGTCATGTTGTCGACATCG 59.202 41.667 20.80 8.30 45.88 3.84
3084 3286 0.030603 GGAGGGAGGGAGGAAGACAT 60.031 60.000 0.00 0.00 0.00 3.06
3097 3300 0.393820 GTGTTGTTACACGGGAGGGA 59.606 55.000 0.00 0.00 44.66 4.20
3124 3340 4.753516 AAGTTGGTCCATCACGATGATA 57.246 40.909 8.62 0.00 41.20 2.15
3137 3353 4.704965 ACTCCTGTAAGACAAAGTTGGTC 58.295 43.478 1.76 1.76 34.07 4.02
3146 3362 3.803715 GCTCAAGCAACTCCTGTAAGACA 60.804 47.826 0.00 0.00 41.59 3.41
3219 3436 3.558674 CCTTCCTGAGGTTGCGAAT 57.441 52.632 0.00 0.00 40.95 3.34
3306 3523 2.188818 ATCAAGGAAGGAGGGAGAGG 57.811 55.000 0.00 0.00 0.00 3.69
3310 3527 5.155905 GGATAACTATCAAGGAAGGAGGGA 58.844 45.833 0.00 0.00 34.40 4.20
3321 3538 3.314693 AGAAGCGGGGGATAACTATCAA 58.685 45.455 0.00 0.00 34.40 2.57
3322 3539 2.897969 GAGAAGCGGGGGATAACTATCA 59.102 50.000 0.00 0.00 34.40 2.15
3323 3540 3.166679 AGAGAAGCGGGGGATAACTATC 58.833 50.000 0.00 0.00 0.00 2.08
3330 3547 5.144159 TGATATATAGAGAAGCGGGGGAT 57.856 43.478 0.00 0.00 0.00 3.85
3331 3548 4.603094 TGATATATAGAGAAGCGGGGGA 57.397 45.455 0.00 0.00 0.00 4.81
3336 3553 5.502606 TCGCGATTGATATATAGAGAAGCG 58.497 41.667 3.71 11.97 43.37 4.68
3345 3562 7.870954 TGGTTTAAACTCTCGCGATTGATATAT 59.129 33.333 10.36 0.00 0.00 0.86
3351 3569 3.181520 CCTGGTTTAAACTCTCGCGATTG 60.182 47.826 10.36 8.21 0.00 2.67
3352 3570 3.000727 CCTGGTTTAAACTCTCGCGATT 58.999 45.455 10.36 3.06 0.00 3.34
3358 3582 5.216614 AGACAGACCTGGTTTAAACTCTC 57.783 43.478 17.50 7.43 34.19 3.20
3371 3595 3.474798 TCCACCAGAATAGACAGACCT 57.525 47.619 0.00 0.00 0.00 3.85
3522 3746 3.118371 AGTCCCGACTTGTTCAAGTCTTT 60.118 43.478 30.04 15.68 45.25 2.52
3539 3763 3.310652 GGTGTAGCCTGGAGTCCC 58.689 66.667 6.74 0.00 0.00 4.46
3583 3807 3.209410 CAAGACACAACAAAGAGAGGCT 58.791 45.455 0.00 0.00 0.00 4.58
3585 3809 5.116180 TGTACAAGACACAACAAAGAGAGG 58.884 41.667 0.00 0.00 31.20 3.69
3586 3810 5.812642 ACTGTACAAGACACAACAAAGAGAG 59.187 40.000 0.00 0.00 33.31 3.20
3598 3827 4.038282 ACATGTAACGGACTGTACAAGACA 59.962 41.667 0.00 0.00 36.35 3.41
3642 3871 5.246656 TCTGGAAATGCAAAAGAATGGATGT 59.753 36.000 0.00 0.00 31.19 3.06
3687 3916 9.956720 CAGAACCCATATGTTTGATAAAAGATC 57.043 33.333 1.24 0.00 0.00 2.75
3714 3946 5.587844 ACATCACCATCTTGAAAGAGCATAC 59.412 40.000 0.00 0.00 38.66 2.39
3716 3948 4.398358 CACATCACCATCTTGAAAGAGCAT 59.602 41.667 0.00 0.00 38.66 3.79
3717 3949 3.754850 CACATCACCATCTTGAAAGAGCA 59.245 43.478 0.00 0.00 38.66 4.26
3722 3954 4.701651 GGACATCACATCACCATCTTGAAA 59.298 41.667 0.00 0.00 0.00 2.69
3725 3957 3.613030 TGGACATCACATCACCATCTTG 58.387 45.455 0.00 0.00 0.00 3.02
3732 3964 1.442769 ACGCTTGGACATCACATCAC 58.557 50.000 0.00 0.00 0.00 3.06
3766 3998 5.125417 GCATAATTCAACAACCTGAGCCTAA 59.875 40.000 0.00 0.00 0.00 2.69
3856 4093 6.205853 AGCAACCGTTGTCTATTTTCATTGTA 59.794 34.615 12.77 0.00 0.00 2.41
3860 4097 6.811253 TTAGCAACCGTTGTCTATTTTCAT 57.189 33.333 12.77 0.00 0.00 2.57
3879 4117 6.261826 AGCTTGATGAAATACAGTGGATTAGC 59.738 38.462 9.41 9.41 0.00 3.09
3891 4129 7.394359 GGATAGCCCATAAAGCTTGATGAAATA 59.606 37.037 23.45 12.99 41.83 1.40
3899 4137 1.537202 GCGGATAGCCCATAAAGCTTG 59.463 52.381 0.00 0.00 41.83 4.01
3917 4155 6.360681 GGAGTAATATTTTGCTATTGCTTGCG 59.639 38.462 0.00 0.00 35.16 4.85
3918 4156 6.642540 GGGAGTAATATTTTGCTATTGCTTGC 59.357 38.462 0.00 0.00 35.16 4.01
3930 4168 4.042174 TGGGACGGAGGGAGTAATATTTT 58.958 43.478 0.00 0.00 0.00 1.82
3937 4175 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3938 4176 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3939 4177 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3940 4178 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3941 4179 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3942 4180 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3943 4181 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3944 4182 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3945 4183 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
3946 4184 7.853929 CCAAAAACGTTCTTATATTATGGGACG 59.146 37.037 0.00 9.33 0.00 4.79
3947 4185 8.895737 TCCAAAAACGTTCTTATATTATGGGAC 58.104 33.333 0.00 0.00 0.00 4.46
3948 4186 9.463902 TTCCAAAAACGTTCTTATATTATGGGA 57.536 29.630 0.00 0.00 0.00 4.37
3949 4187 9.511144 GTTCCAAAAACGTTCTTATATTATGGG 57.489 33.333 0.00 0.00 0.00 4.00
3955 4193 9.498176 AGTGTAGTTCCAAAAACGTTCTTATAT 57.502 29.630 0.00 0.00 0.00 0.86
3956 4194 8.891671 AGTGTAGTTCCAAAAACGTTCTTATA 57.108 30.769 0.00 0.00 0.00 0.98
3957 4195 7.797038 AGTGTAGTTCCAAAAACGTTCTTAT 57.203 32.000 0.00 0.00 0.00 1.73
3958 4196 7.981225 ACTAGTGTAGTTCCAAAAACGTTCTTA 59.019 33.333 0.00 0.00 34.86 2.10
3959 4197 6.820152 ACTAGTGTAGTTCCAAAAACGTTCTT 59.180 34.615 0.00 0.00 34.86 2.52
3960 4198 6.257193 CACTAGTGTAGTTCCAAAAACGTTCT 59.743 38.462 15.06 0.00 36.76 3.01
3961 4199 6.036408 ACACTAGTGTAGTTCCAAAAACGTTC 59.964 38.462 26.91 0.00 42.90 3.95
3962 4200 5.876460 ACACTAGTGTAGTTCCAAAAACGTT 59.124 36.000 26.91 0.00 42.90 3.99
3963 4201 5.422145 ACACTAGTGTAGTTCCAAAAACGT 58.578 37.500 26.91 0.00 42.90 3.99
3964 4202 5.521010 TGACACTAGTGTAGTTCCAAAAACG 59.479 40.000 27.98 0.00 45.05 3.60
3965 4203 6.913873 TGACACTAGTGTAGTTCCAAAAAC 57.086 37.500 27.98 11.61 45.05 2.43
3966 4204 7.925043 TTTGACACTAGTGTAGTTCCAAAAA 57.075 32.000 27.98 14.36 45.05 1.94
3967 4205 7.925043 TTTTGACACTAGTGTAGTTCCAAAA 57.075 32.000 29.84 29.84 45.05 2.44
3968 4206 7.390996 TGTTTTTGACACTAGTGTAGTTCCAAA 59.609 33.333 27.98 25.99 45.05 3.28
3969 4207 6.879993 TGTTTTTGACACTAGTGTAGTTCCAA 59.120 34.615 27.98 22.31 45.05 3.53
3970 4208 6.408035 TGTTTTTGACACTAGTGTAGTTCCA 58.592 36.000 27.98 17.99 45.05 3.53
3971 4209 6.913873 TGTTTTTGACACTAGTGTAGTTCC 57.086 37.500 27.98 15.61 45.05 3.62
3972 4210 8.827677 AGAATGTTTTTGACACTAGTGTAGTTC 58.172 33.333 27.98 15.97 45.05 3.01
3973 4211 8.732746 AGAATGTTTTTGACACTAGTGTAGTT 57.267 30.769 27.98 13.21 45.05 2.24
3974 4212 8.732746 AAGAATGTTTTTGACACTAGTGTAGT 57.267 30.769 27.98 10.32 45.05 2.73
4012 4250 5.028549 TCATGCAAGAGAGGAAATACTCC 57.971 43.478 0.00 0.00 45.81 3.85
4013 4251 6.541641 ACATTCATGCAAGAGAGGAAATACTC 59.458 38.462 0.00 0.00 37.77 2.59
4014 4252 6.421485 ACATTCATGCAAGAGAGGAAATACT 58.579 36.000 0.00 0.00 0.00 2.12
4015 4253 6.690194 ACATTCATGCAAGAGAGGAAATAC 57.310 37.500 0.00 0.00 0.00 1.89
4054 4317 2.352323 GGGTCCAAATTTGTAGGTTGCG 60.352 50.000 16.73 0.00 0.00 4.85
4060 4323 3.673052 CGTGCATGGGTCCAAATTTGTAG 60.673 47.826 16.73 2.95 0.00 2.74
4062 4325 1.000731 CGTGCATGGGTCCAAATTTGT 59.999 47.619 16.73 0.00 0.00 2.83
4067 4330 1.963855 CGACGTGCATGGGTCCAAA 60.964 57.895 11.36 0.00 0.00 3.28
4069 4332 2.178876 AATCGACGTGCATGGGTCCA 62.179 55.000 11.36 0.00 0.00 4.02
4071 4334 1.865865 ATAATCGACGTGCATGGGTC 58.134 50.000 11.36 8.05 0.00 4.46
4087 4507 8.094548 GCCTAACATGGACTACACATCATATAA 58.905 37.037 0.00 0.00 0.00 0.98
4088 4508 7.454694 AGCCTAACATGGACTACACATCATATA 59.545 37.037 0.00 0.00 0.00 0.86
4089 4509 6.270927 AGCCTAACATGGACTACACATCATAT 59.729 38.462 0.00 0.00 0.00 1.78
4092 4512 3.774766 AGCCTAACATGGACTACACATCA 59.225 43.478 0.00 0.00 0.00 3.07
4093 4513 4.122776 CAGCCTAACATGGACTACACATC 58.877 47.826 0.00 0.00 0.00 3.06
4095 4515 2.236146 CCAGCCTAACATGGACTACACA 59.764 50.000 0.00 0.00 39.02 3.72
4110 4530 1.562672 ATTAACAGTCCCGCCAGCCT 61.563 55.000 0.00 0.00 0.00 4.58
4114 4534 3.075884 GTGTTTATTAACAGTCCCGCCA 58.924 45.455 0.00 0.00 44.53 5.69
4146 4566 7.148407 ACGGATGTGAAAATCTCAAGTATGAAC 60.148 37.037 0.00 0.00 35.22 3.18
4149 4569 6.668541 ACGGATGTGAAAATCTCAAGTATG 57.331 37.500 0.00 0.00 35.22 2.39
4150 4570 8.830580 CAATACGGATGTGAAAATCTCAAGTAT 58.169 33.333 0.00 0.00 35.22 2.12
4151 4571 7.279981 CCAATACGGATGTGAAAATCTCAAGTA 59.720 37.037 0.00 0.00 33.72 2.24
4152 4572 6.094048 CCAATACGGATGTGAAAATCTCAAGT 59.906 38.462 0.00 0.00 33.72 3.16
4153 4573 6.458751 CCCAATACGGATGTGAAAATCTCAAG 60.459 42.308 0.00 0.00 33.72 3.02
4155 4575 4.881273 CCCAATACGGATGTGAAAATCTCA 59.119 41.667 0.00 0.00 36.56 3.27
4156 4576 4.881850 ACCCAATACGGATGTGAAAATCTC 59.118 41.667 0.00 0.00 36.56 2.75
4157 4577 4.855340 ACCCAATACGGATGTGAAAATCT 58.145 39.130 0.00 0.00 36.56 2.40
4158 4578 4.638421 TGACCCAATACGGATGTGAAAATC 59.362 41.667 0.00 0.00 36.56 2.17
4159 4579 4.594970 TGACCCAATACGGATGTGAAAAT 58.405 39.130 0.00 0.00 36.56 1.82
4179 4599 4.973168 ACTAAACATCTGAAACCTGCTGA 58.027 39.130 0.00 0.00 0.00 4.26
4182 4602 4.072131 TGGACTAAACATCTGAAACCTGC 58.928 43.478 0.00 0.00 0.00 4.85
4184 4604 5.070685 GGTTGGACTAAACATCTGAAACCT 58.929 41.667 0.00 0.00 0.00 3.50
4192 4612 2.007608 GGCGAGGTTGGACTAAACATC 58.992 52.381 0.00 0.00 37.47 3.06
4209 4629 0.249238 GACTAGCTCCTCATGTGGCG 60.249 60.000 9.02 4.11 0.00 5.69
4240 4664 4.796231 CGCTTCTGGACGACCCGG 62.796 72.222 0.34 0.00 42.96 5.73
4268 4692 6.757897 TTTAACTAAGGGTGCAATGATGAG 57.242 37.500 0.00 0.00 0.00 2.90
4269 4693 7.450014 TCTTTTTAACTAAGGGTGCAATGATGA 59.550 33.333 0.00 0.00 0.00 2.92
4302 4726 5.813080 AAGCGGAGAACATTATTGGTAAC 57.187 39.130 0.00 0.00 0.00 2.50
4307 4731 6.603237 TGTGATAAGCGGAGAACATTATTG 57.397 37.500 0.00 0.00 0.00 1.90
4309 4733 7.047891 TCTTTGTGATAAGCGGAGAACATTAT 58.952 34.615 0.00 0.00 0.00 1.28
4314 4738 4.929808 TCTTCTTTGTGATAAGCGGAGAAC 59.070 41.667 0.00 0.00 0.00 3.01
4340 4764 5.408880 TCCGTTTGTGAACCATGACTATA 57.591 39.130 0.00 0.00 31.93 1.31
4352 4776 2.503331 ACATCAATGCTCCGTTTGTGA 58.497 42.857 0.00 0.00 0.00 3.58
4353 4777 2.995466 ACATCAATGCTCCGTTTGTG 57.005 45.000 0.00 0.00 0.00 3.33
4355 4779 2.409378 GCAAACATCAATGCTCCGTTTG 59.591 45.455 8.54 8.54 45.75 2.93
4356 4780 2.035704 TGCAAACATCAATGCTCCGTTT 59.964 40.909 0.00 0.00 42.97 3.60
4357 4781 1.612950 TGCAAACATCAATGCTCCGTT 59.387 42.857 0.00 0.00 42.97 4.44
4358 4782 1.068333 GTGCAAACATCAATGCTCCGT 60.068 47.619 0.00 0.00 42.97 4.69
4360 4784 1.621107 CGTGCAAACATCAATGCTCC 58.379 50.000 0.00 0.00 42.97 4.70
4361 4785 1.621107 CCGTGCAAACATCAATGCTC 58.379 50.000 0.00 0.00 42.97 4.26
4422 4855 3.506096 CAGCAGATGCAGGCGGTG 61.506 66.667 7.68 0.00 45.16 4.94
4423 4856 3.965539 GACAGCAGATGCAGGCGGT 62.966 63.158 12.02 12.02 45.16 5.68
4424 4857 3.200593 GACAGCAGATGCAGGCGG 61.201 66.667 7.68 0.00 45.16 6.13
4425 4858 1.744368 AAGACAGCAGATGCAGGCG 60.744 57.895 7.68 0.00 40.85 5.52
4426 4859 1.801332 CAAGACAGCAGATGCAGGC 59.199 57.895 7.68 0.52 45.16 4.85
4427 4860 0.677098 AGCAAGACAGCAGATGCAGG 60.677 55.000 7.68 1.33 45.16 4.85
4428 4861 0.448197 CAGCAAGACAGCAGATGCAG 59.552 55.000 7.68 1.15 45.16 4.41
4429 4862 0.958876 CCAGCAAGACAGCAGATGCA 60.959 55.000 7.68 0.00 45.16 3.96
4430 4863 1.654954 CCCAGCAAGACAGCAGATGC 61.655 60.000 0.00 0.00 42.49 3.91
4431 4864 1.654954 GCCCAGCAAGACAGCAGATG 61.655 60.000 0.00 0.00 36.85 2.90
4432 4865 1.378250 GCCCAGCAAGACAGCAGAT 60.378 57.895 0.00 0.00 36.85 2.90
4433 4866 2.033141 GCCCAGCAAGACAGCAGA 59.967 61.111 0.00 0.00 36.85 4.26
4434 4867 2.033757 AGCCCAGCAAGACAGCAG 59.966 61.111 0.00 0.00 36.85 4.24
4435 4868 2.033141 GAGCCCAGCAAGACAGCA 59.967 61.111 0.00 0.00 36.85 4.41
4436 4869 2.749441 GGAGCCCAGCAAGACAGC 60.749 66.667 0.00 0.00 0.00 4.40
4437 4870 2.435586 CGGAGCCCAGCAAGACAG 60.436 66.667 0.00 0.00 0.00 3.51
4438 4871 4.020617 CCGGAGCCCAGCAAGACA 62.021 66.667 0.00 0.00 0.00 3.41
4473 4906 3.094062 ATCTCCATGACACGGGCCG 62.094 63.158 27.06 27.06 0.00 6.13
4474 4907 1.524621 CATCTCCATGACACGGGCC 60.525 63.158 0.00 0.00 30.57 5.80
4475 4908 2.182842 GCATCTCCATGACACGGGC 61.183 63.158 0.00 0.00 30.57 6.13
4476 4909 0.812811 CTGCATCTCCATGACACGGG 60.813 60.000 0.00 0.00 30.57 5.28
4477 4910 1.434622 GCTGCATCTCCATGACACGG 61.435 60.000 0.00 0.00 30.57 4.94
4478 4911 1.434622 GGCTGCATCTCCATGACACG 61.435 60.000 0.50 0.00 30.57 4.49
4479 4912 0.107312 AGGCTGCATCTCCATGACAC 60.107 55.000 0.50 0.00 30.57 3.67
4480 4913 0.179702 GAGGCTGCATCTCCATGACA 59.820 55.000 7.11 0.00 30.57 3.58
4481 4914 0.469070 AGAGGCTGCATCTCCATGAC 59.531 55.000 11.54 0.00 30.57 3.06
4482 4915 0.468648 CAGAGGCTGCATCTCCATGA 59.531 55.000 14.64 0.00 30.57 3.07
4483 4916 3.008141 CAGAGGCTGCATCTCCATG 57.992 57.895 14.64 0.03 31.96 3.66
4494 4927 4.400961 GCAAGGTCGGCAGAGGCT 62.401 66.667 0.00 0.00 40.87 4.58
4513 4946 2.743928 CCACGTTCAGCCTCCAGC 60.744 66.667 0.00 0.00 44.25 4.85
4514 4947 2.046892 CCCACGTTCAGCCTCCAG 60.047 66.667 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.