>input_sequence_31393
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-------------------------------------------------------------ATGCTGGGGAGGGGGCGCG
GCGGCGACTCCGAGAGGCCGCACAGAGAGGTGAGTGGCAGATGCTTCTTGGCTTGTTCGGATCTGTTGGTGCTCATGGCG
TGTCCATTTCGTAGGATTGCTTGTTGTTCTTGGTGGGTGGTTATTCTCATCAGTTTTCT---CATTTCTCATGTGTGTCC
GTTTTTGTGCTTTTTTTGAACTCGTTTTTTGTCTGTTGTTGAAAAGAAAGCGTGTGTTCTTCT--AAGTATTCAGATTTT
CTGGTGGCTGTTTTGCTCCGAAATCTTTCGTTTCAATTTCACATTTGCGCCCTTCAAAATCCAGCTTCGCTGTTACGATT
ACTCTTTTAGCGATTATGAGCAGCCTTG-AATGCGATGTTCTGTTTAAGCATCTGAAACAGTGCTCTCCACTACCACGTT
TGATGCTATGCCTTCGGGGCAATACCGAATTCTCCGTATGCAAGTGG--------AATCTTTTGACATGTTCTGCCAGCC
A----------------------------GCTGACGCTGCGTTTCTCATGTGATG----TCCACAGCGGCCCTGCCTGTC
CCGGAGGGCGAGCATGCAGGAGCAGATGTCCTCGTCGTTCATGGAGTCGCCGCCGCCGCCGCCGCTGCATCACCTGGACG
GCCCCTTCTTCGGCGCCGACCTGCTCCCCTCCGCGCGCCTCCGCCGGATGCGCGGGTACCGCCCCTCCCCCGGCGGCCTC
GAAGAAGAGGTACGATACAGCACACTAGTCTCAGCACCAGTATTAAATACACTGCATCA-------TACCAGTATCGCCT
TGCGTTTGCTTGCACGCTTGAGCCGCATCT-ATGCCTTCTCCGCCTCGGCGTCCAGCGGTCGGTGCGCGATTACGTTACC
ATAAGATTCCCGTGCGTATGACAAT---AA---TAGTGTAGCCAGGGTTGTCATTGTGTGTGATCTGACAAATGTTCGTG
CTGTAACCCCTGGGCGTTGGAGGTGGTTGACTTGCTTCTTTCGTGCGCTAAACGTGACGTGAGATCGTGGCCTTCTCGTT
GGTT----AACGAACCCATAATTAAGTGGCTCCGGCCACGGAGCTCCGCTACGCTGTGTGGCCATGGAGAGAGACCTCTC
AACCATGGCATGCAGACGCAGACTACCAA------------------CACTTGCGCTGAGCTGAGCTGGGCCGGGCAGCC
ACGGCGCTGCTGATGGAA--------------TGGCCAGTCAAATGGCGTCCAAACTAGATATGCTGTTTCGGAGCTGGG
GAAGA----GGTGGTAGATGTGGAACACCTGAGCATGACAACCCATAATGCCACTTTATTTGTTCATTCATTCTCTTTTT
GGCATGCTGTTCTAGCGGATCGTACAGTAGGTAGGGAATGGGGATGGGCATTCTGGTGGGTGAATGATGGCTTTCAGACT
TTGCCTCGG---TGCCCAGCTCTTCTGCCTGACTCGACTGCTCTTTTGCTGCTCAGGGGGACCGGGCACCCTCATGATTT
GCCTGTTGCTTCAGTCATAATCAGATCTCATGTTGT---------TTGTGTATTTCGTGATCACCTAGCTGGTGAGGGCT
CTTATCTTATTGTTGGATGTGAATATTG---AGGGTTTCCTTGTCCCTGTAGTAGGCAACTATCAAAGAT-------ATG
CAGACGGTGGGTGGGGCAATTTAACATCTCAAGTTGTAG----------TCCTAATTGGTTGGTTGGAGGAAACCTATTT
CCTGGTCTTGCCCTTGACCCATGGGTCTAAGCGTGATGCAAAATGAGCCACCC---------------------ACCTGA
AGTATAACCTTA--AAACCTGCTGTATGTAGTCTGGAAAGAAAATCGTAG--------ACGATACAAATAAAAGTATGAA
ATAATCAACATATTATCCGTGGGCCTAAAAGTGACAATTTTTATAAGATGTTTACAC------AATGCTCACTTCTTTAT
TCGTTCATGCTTGTTCATCTAAGGTGAACATTTTTAATGGAAGCATGCCCATG---------CATGGGTGCGCAATGATT
TCTGTCTAATGAAATGCCAGCAGGGTA--CCAGTTTCGAATGCTTACCTTCTTTATATGTATGGCAGATCATGATGTTTC
AGACAAGAGTGTTGTTGGGAGGAATGAATATGTATGATCGGTACCAGGATTGGCGCCTCGATGTCGACAACATGACTTAT
GAGGTATGTCT-TCCTCCCTCCCTCCCGTGT-----AACAACACTTGGCAT--------TATCATCGTGATGGACCAACT
TTGTCTT-ACAGGAGTTGCTTGAGCTTGGAGAAAGAATAGGGCATGTCAACACAGGGCTACGCGAGGATGAGATAATTCG
CAACCTCAGGAAGGTCAAGCCTGATTCATCATTCCGGTTTCCGACGGAAGTGGAGAAGAAATGCAGTATTTGTCAAGTAT
GCCCTCTCCCTCCTTCCTTGATAGTTATCCCCCGCTTCTCTATA-TATCAATC------GCGAGAGTTTAAACCAGGTCT
GTCTATTCTGGTGGATGTTGCAGGAAGAGTTTGAAGCAAATGACGAGATGGGGAGGCTGGGCTGCGGCCACAGCTACCAT
GTTTACTGCATCAAGCAGTGGCTTTCTCAGAAGAACGTTTGCCCGGTTTGCAAGACTGCTGTCACAAAGACTTGA-----
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----
>chr3D_1_TraesCS3D01G260700
TATCTTCCAGGAACTATCTATGACTGTTGTTCAAATTTTCAATCTCGGACACTCTAGACTTAAGTTACAACTGAGGGCAT
TTGGTGTTTCTCGAAGAATATATTTAAAATCCACTTTGACGTTTCTAGTCGACACCTTTTCCACTGTGACGTTTGGCGCC
ATGTTTCGTGTTACAAGGGAAAAGGGAAACATGTTTCATGCCACATTTGTTTAAGCAGCCCTACACCATGTGTAGTGGTA
TTATTTGACCGTTCTGGAGCTCGGAACTCACCAAACCAC---CAAGTCAAGAACATCCGTCCCCTT-AATCCAGGGCCAC
GCCGATTCCGGGACAAGAATTTACCACCTCGCGTCGCATTTCCTTTCCTCCTCGTGCTCGCTCGCTC--------GGCCC
CTCGAGTATACACTTCTCTAGCCTTCCACAGGCTAGACAACAAACGCGAACCCGCGCCCCCCCCCTCTGCTCTGCCTGCG
CCCGCCCGCCCGCCCGCTCACAGGCGCTGCCTGGCAGTGCCATTACTGCCCCCACCCGTCTCTCCAGGCCCGAGCAGAGC
ACGCCAGGGGAACCGGGTTCCTCGTCATGGCCGGTGACCGCCGCGGCGGGTCGCCCACGGTGGAGCGCCGGCGGGGGATC
CGGCGCCTCCTGCTGCCACGAGGGGAGGCCTCCTCCTCCTCCT---CCTCGGCGCCGCTGCCTCCGCCGGCCGCGCCCGA
GGTGGGGCGGAGGAAGGGCTTCGCCTCCGCGGCGCTGCGCGGGCTGGGCTGCACGTCGGCCGCGGCCTCGCAGGCGTACG
CGCCATGGGCGGGCTCCGCGGCTGCGGCGGCCGTACGGTCGTCCGCCGACTGGCACGGGCGGAGGAAGAAAGGGAAGGAC
AGGAGGAAGGAGAGGGGAGGAGGTGGA------GGAGGCGGCCTTGTGGGCGGAGGGATCGGCGGCGACGTGTGGTGCGC
CCCGGGGATACCGTTCGCCGCGGAGGCGTCCTCCGTGGACTGCGTGGTGGCGCGCCACCAGATGCTGGGGAGGGGGCGCG
GCGGCGACTCCGAGAGGCCGCACAGAGAGGTGAGTGGCAGATGCTTCTTGGCTTGTTCGGATCTGTTGGTGCTCATGGCG
TGTCCATTTCGTAGGATTGCTTGTTGTTCTTGGTGGGTGGTTATTCTCATCAGTTTTCT---CATTTCTCATGTGTGTCC
GTTTTTGTGCTTTTTTTGAACTCGTTTTTTGTCTGTTGTTGAAAAGAAAGCGTGTGTTCTTCT--AAGTATTCAGATTTT
CTGGTGGCTGTTTTGCTCCGAAATCTTTCGTTTCAATTTCACATTTGCGCCCTTCAAAATCCAGCTTCGCTGTTACGATT
ACTCTTTTAGCGATTATGAGCAGCCTTG-AATGCGATGTTCTGTTTAAGCATCTGAAACAGTGCTCTCCACTACCACGTT
TGATGCTATGCCTTCGGGGCAATACCGAATTCTCCGTATGCAAGTGG--------AATCTTTTGACATGTTCTGCCAGCC
A----------------------------GCTGACGCTGCGTTTCTCATGTGATG----TCCACAGCGGCCCTGCCTGTC
CCGGAGGGCGAGCATGCAGGAGCAGATGTCCTCGTCGTTCATGGAGTCGCCGCCGCCGCCGCCGCTGCATCACCTGGACG
GCCCCTTCTTCGGCGCCGACCTGCTCCCCTCCGCGCGCCTCCGCCGGATGCGCGGGTACCGCCCCTCCCCCGGCGGCCTC
GAAGAAGAGGTACGATACAGCACACTAGTCTCAGCACCAGTATTAAATACACTGCATCA-------TACCAGTATCGCCT
TGCGTTTGCTTGCACGCTTGAGCCGCATCT-ATGCCTTCTCCGCCTCGGCGTCCAGCGGTCGGTGCGCGATTACGTTACC
ATAAGATTCCCGTGCGTATGACAAT---AA---TAGTGTAGCCAGGGTTGTCATTGTGTGTGATCTGACAAATGTTCGTG
CTGTAACCCCTGGGCGTTGGAGGTGGTTGACTTGCTTCTTTCGTGCGCTAAACGTGACGTGAGATCGTGGCCTTCTCGTT
GGTT----AACGAACCCATAATTAAGTGGCTCCGGCCACGGAGCTCCGCTACGCTGTGTGGCCATGGAGAGAGACCTCTC
AACCATGGCATGCAGACGCAGACTACCAA------------------CACTTGCGCTGAGCTGAGCTGGGCCGGGCAGCC
ACGGCGCTGCTGATGGAA--------------TGGCCAGTCAAATGGCGTCCAAACTAGATATGCTGTTTCGGAGCTGGG
GAAGA----GGTGGTAGATGTGGAACACCTGAGCATGACAACCCATAATGCCACTTTATTTGTTCATTCATTCTCTTTTT
GGCATGCTGTTCTAGCGGATCGTACAGTAGGTAGGGAATGGGGATGGGCATTCTGGTGGGTGAATGATGGCTTTCAGACT
TTGCCTCGG---TGCCCAGCTCTTCTGCCTGACTCGACTGCTCTTTTGCTGCTCAGGGGGACCGGGCACCCTCATGATTT
GCCTGTTGCTTCAGTCATAATCAGATCTCATGTTGT---------TTGTGTATTTCGTGATCACCTAGCTGGTGAGGGCT
CTTATCTTATTGTTGGATGTGAATATTG---AGGGTTTCCTTGTCCCTGTAGTAGGCAACTATCAAAGAT-------ATG
CAGACGGTGGGTGGGGCAATTTAACATCTCAAGTTGTAG----------TCCTAATTGGTTGGTTGGAGGAAACCTATTT
CCTGGTCTTGCCCTTGACCCATGGGTCTAAGCGTGATGCAAAATGAGCCACCC---------------------ACCTGA
AGTATAACCTTA--AAACCTGCTGTATGTAGTCTGGAAAGAAAATCGTAG--------ACGATACAAATAAAAGTATGAA
ATAATCAACATATTATCCGTGGGCCTAAAAGTGACAATTTTTATAAGATGTTTACAC------AATGCTCACTTCTTTAT
TCGTTCATGCTTGTTCATCTAAGGTGAACATTTTTAATGGAAGCATGCCCATG---------CATGGGTGCGCAATGATT
TCTGTCTAATGAAATGCCAGCAGGGTA--CCAGTTTCGAATGCTTACCTTCTTTATATGTATGGCAGATCATGATGTTTC
AGACAAGAGTGTTGTTGGGAGGAATGAATATGTATGATCGGTACCAGGATTGGCGCCTCGATGTCGACAACATGACTTAT
GAGGTATGTCT-TCCTCCCTCCCTCCCGTGT-----AACAACACTTGGCAT--------TATCATCGTGATGGACCAACT
TTGTCTT-ACAGGAGTTGCTTGAGCTTGGAGAAAGAATAGGGCATGTCAACACAGGGCTACGCGAGGATGAGATAATTCG
CAACCTCAGGAAGGTCAAGCCTGATTCATCATTCCGGTTTCCGACGGAAGTGGAGAAGAAATGCAGTATTTGTCAAGTAT
GCCCTCTCCCTCCTTCCTTGATAGTTATCCCCCGCTTCTCTATA-TATCAATC------GCGAGAGTTTAAACCAGGTCT
GTCTATTCTGGTGGATGTTGCAGGAAGAGTTTGAAGCAAATGACGAGATGGGGAGGCTGGGCTGCGGCCACAGCTACCAT
GTTTACTGCATCAAGCAGTGGCTTTCTCAGAAGAACGTTTGCCCGGTTTGCAAGACTGCTGTCACAAAGACTTGAACAAG
TCGGGACTCCAGGCTACACCTATTGTGTACCTGGGTGGACCTGAAAAGCC-----TCTCTTTGTTGTGTCTTGTACAGTC
CGTTACATGTATTATTATTGTCTAAACACAACATCCATTCTTTTGCATTTCCAGATAGAAATGCCATATTGCGGCGATCT
TTTATCAAACATATGG---GTTCTGGTATGCTCTTTCAAGATGGTGATGTGATGTCCAAGCGTTTTGCAGAACTGACTTA
GGCTCAGGTTGTTGAATTATGCTGTAGTGCTTATTTTATTA-----TTGTAGTGAAAAATTAGCCACAAAAGCAGACAAA
GCGGATCAAGCATACAATGAAAATAGACAACG-GTTGCTAATCCACTGTATTTCATCAAGCTTTATGGGCTATCCGCAAG
CAATAGCAAAATATTACTCCCTCCGTCCCATAATATAAGAACGTTTTTGGAACTACACTAGTGTCAAAAACATTCTTATA
TTATATGATGGAGTATTTCCTCTCTTGCATGAATGT-------------------------AAGAGCATCTACAGCCGCA
ACCTACAAATTTGG------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ACCCATGCACGTCGATTATATGATGTGTAGTCCATGTTAGGCTGGCGGGACTGTTAATAAACACCAAAT
AAATAGTTCATACTTGAGATTTTCACATCCGTATTGGGTCAGCAGGTTTCAGATGTTTAGTCCAACCTCGCCACATGAGG
AGCTAGTCGACCGGCT----TAGCCGGGTCGTCCAGAAGCGATAAGCTTCACTCATCATTGCACCCTTAGTTAAAAAGAT
GAATTGTTACCAATAATGTTCTCCGCTTATCACAAAGAAGATTTATAGTCATGGTTCACAAACGG---------AGCATT
GATGTTTGCACGGCTCTTTTTGAATCACAATGTGTCGCCGCGCCGTCGTTGCTGCACCGCCTGCATCTGCTGTCTTGCTG
GGCTCCGGCTCCTCCGGCGCGGACGCGGCCCGTGTCATGGAGATGCAGCCTCTGCCGACCTTGCCGCTGGAGGCTGAACG
TGGG
>chr3B_149
--------------------------------------------------------------------------------
--------------------------------------------------------------------ACGTTTGGCGCC
ATATTTCGTGTTACAAGGGAAACATGTGTTT------ATGCCACATTTGTTTAAGCAGCCCTACACCATGTGTAGTGGTA
T--TTTGACCGTTCCGGAGCTCGAAACTCACCAAACCACCAACAAGTCAAGAACATCCGTCCCCTTGAATCCAGGGCCAC
GCCGATTCCGGGACAAGAATTTACCACCTCGCATCGCATTTCCTTTCCTCCTCGTGCTCGCTCGCTCGCTCGCTCGGCCC
CTCAAGTATACACTTCTCTAGCCTTCCACACGCTAGACAACAAACGCGACCCCGCG-----CCCCTCTGCTCTGCCTGCG
CCCGCCCGCT----CGCTCACAGGCGCTGCCTGGCAGTGCCATTACTGCCCCCACCCGTCTCTCCGGGCCCGAGCACGCC
AG----GGGGAACCGGGTTCCTCCTCATGGCCGGTGACCGCCGCGGCGGGTCGCCCACGGTGGAGCGCCGGCGGGGGATC
CGGCGCCTCCTGCTGCCCCGCGGGGAGGTCTCCTCGTCCTCCTCGCCCTCGGTGCCGCTGCCTCCGCCGGCCGCAGCCGA
GGTGGGGCGGAGGAAGAGCTTCGCCTCCGCGGCGCTGCGCGGGCTGGGCTGCACGTCGGCCGCGGCCTCGCAGGCGTACG
CGCCAGGGGCGGGCTCCGCGGCTGCGGCGGCCGTGCGGTCGTCCGCCGACTGGCACGGGCGAAGGAAGAAAGGGAAGGAC
AGGAGGAAGGAGAGGGGAGGAGGTGGA------GGAGGCGGCCTTGTGGGCGGAGGGATCGGCGGCGACGTGTGGTGCGC
CCCGGGGATACCGTTCGCCGCGGAGGCGTCGTCCGTGGACTGCGTGGTGGCGCGCCACCAGATGCTGGGGAGGGGGCGCG
GCGGCGACGCCGAGAGGCCGCACAGAGAGGTGAGCCGTAGATGCTTACTGGCTTCTTTGGATCTGTTCGCGCTCACAGCT
TGTCCATTTCGTAGGATTGCTTGCTGTTCTTGGTGGGTGGTTATTCTCATCAGTTTTCT---CATTCCTCATGTGCGTCC
GTTTTTGTGCTTTTTTTGAACTCGTTTTTTGTCTGTTGTTGAAAAGAAAGCGTGTGTTCTTCTCCAAGTATTCAGGTTTT
CTGGTGGCTGTTTTGCTCCGAAATCTTTCATTTCAATTTCACACTTGC--------------------------------
----------------------GCCTTG-AATGCAATGTTCTGTTTAAGCATCTGAAACAGTGCTC--CACTACCACGTT
TGATGCC----------------ACCGAATTCTCCGTATGCAAGTGGG----ATGAATCTTTCGCCATGTTCTGCCAGCC
AAGCCGAATCGATGATGACGAGCCTTTCAGCTGATACTGCGTTTCTCATGTGACATCCATCCACAGCGGCCCTGCCTGTC
CCGGAGGGCGAGCATGCAGGAGCAGATATCGTCGTCGTTCATGGAGTCGCCGCCGCCGCCGCCGCCGGCGCACCTGGACG
GGCCCTTCTTCGGCGCCGACCTGCTCCCCTCCGCGCGCCTCCGCCGGATGCGCGGGTACCGCCCCTCCCCCGGCGGCCTC
GAAGAAGAGGTACGATACAGCACACTAGTCTCGGTACCAGTATTAAATACACTGCATCATACT---TACCAGTATCGCCT
TGCGTTTGCTTGCACACTTGAGCCGCATCT-ATGCCTTCCCCACCTCGGCGTCCAGCGGTCGGTGCGCGATTACGTTGCC
ATAAGATTCCCGTGCGTATGATAAT---ACTACTAGTCTAGCCAGGGTCGG------GTCTGATCTGACAATGTTGGTGC
TGTTAACCCCTGGGCGTTGGAGGTGGTTGACTTGCTTCTTTCGTGCGCTAAACGTGACGTGAGGTCGTGGCCTTCTCGTT
GGTT----AACGAACCCATAATTAAGTGGCTCCAGCCACGGAGCTCCGCTACGCTGTGTGGCCATGGAGAGAGACCTCTC
AACCATGGCATGCAGATGCAGACTGCCAA------------------CACTTGCGCTGAGCTGAGCTGAGCTGGGCAGCC
ACGGCGCAGCTGATGGAATTGCAATGGCCACTTGGCCAGTCAAATGGCGTTCCAACTA----TGCTGTTTCGGAGCTGGG
GAAGA----GGTGGTAGATGTGGAACACCTGAGCATGACAATCCATAATGTGACTTTATATT---ATTCATTCTCTTTTT
GGCTTGCTGCTCTAGCGGATCGTACAGTAGGTGGGGAATGGGGATGGGCATTCTGGTGGGTGAATGATGGCTTTCAGACG
TTGCCTCGG---TGCCCAGCTCTTCTGCCTGACTCGACTGGTCTTTTGCTGCTCAGGGGGACCGGGGACCCTTATGATTT
GCCTGTTGCTTCAGTCATAATCAGATCTCGTGTTGTGGCCATTCCTTGTGTATTTCGTGATCACCTGGCTGGTGAGGGCT
CTTATCTTACTG-TGGATGTGAAGATCCACCAGCGTTTTCTTGTCCCTGTAG---GCAACTATCATAGAT-------ATG
CAGAAGGTGGGTGGGGCAATTTAACATGCTTATTAGGTCTGGTGACAATTCCTAATTGGTTGGTTGGGGGAAGCCTCTTT
CTTGGTCTTGCCACTGACCCAAGGGTCCAAGCGTGATGCTACCTGAGAGAAAATGAGCCACCCCTTTGCATGCTACCTGA
AGTATAACCTTA--TAACCTGTTGTATATAGTCCCAGAAGAAAATCGTAG--------ACGATACAAATAAATGTATGAA
AT-----------TATCCGTGGGCCTAAAAGTGCCAATTTTTATGAGATGTTTATAC------AATGCTCACTT---TAT
TCGTTCATGCTTGTTCCTCTAAGGTGAACATTTTTAACGGAAGCATGCCCATG---------CATGGGTGCGCAATGATT
TCTGTCTCATGAAATGCAAGCAGGGTATGCCAGTTTCGAATGCTTACCTTCTTTATATGTATGGCAGATCATGATGTTTC
AGACAAGAGTGTTGTTGGGAGGAATGAACATGTATGATCGGTACCAGGATTGGCGCCTTGATGTCGACAACATGACTTAT
GAGGTCTGTCTATCCTCCCCCCCTCCCGTGT-----AACAACACTTGGCATCGTCAATTCATCATCGTGATGAACCAACT
TCGTCTT-ACAGGAGTTGCTTGAGCTTGGAGAAAGAATAGGGCATGTCAACACAGGGCTACGCGAGGATGAGATAGTTCG
CAACCTTAGGAAGGTCAAGCCTGATTCGTCATTCCGGCTTCCGACGGAAGCGGAGAAGAAATGCAGTATCTGTCAAGTAT
GCTCTTG-CCTCCTTCCGCTATAGTCC-CCCCTGCTTCTCTTTTGTATACATCGTTTGCGCAAGAGTTCAA---------
--CTATTCTGGTGGATGTTGCAGGAAGAGTTTGAAGCAAATGACGAGCTGGGGAGGCTGGGCTGCGGCCACAGCTACCAT
GTTTACTGCATCAAGCAGTGGCTTTCTCAGAAGAACGTTTGCCCGGTTTGCAAGACTGCTGTTACCAAGACCTGAACAAG
TCTCGACTCCAGGCTACACCTATTGTGTACCTGGGTGGACCTGAAATGAGAAGTTTCTCTTTGTTGCGTCTTGTACAGTC
CGTTACATGTATTATTATTGTCTAAGCACATCATCCATTCTTTTGCATTTCCAGATAGAAATGCCATATTGAGGCCATCT
TTTATCAAACATATGGTAGGTTCTGATGCGCTCGTTTTA---GATGATGTGATGTCCAAGCGTTTTGCAGAACTGACCTA
GGCTCAGGTTGCTGAATTGTGCTGTAGTGATTGTTTTTATACTAATTTGTAGTGAAAAATTAGCCACAAAAGCAGACAAA
GCGGATCAAGCAAACACTACAAATAGACAACGTGTTTCTAATCCACTGAATTTCATTAAACTTTATGGGCTATCTA-AAG
CAATAGCGAAATAT------------------------------------------------------------------
-------------TATTTTCTCGCTTGCATGAATGTGAGTGTCAGCAAGCCATGTGGATATAAGAACATCTACACCTGCG
AC------------------------------------------------------------------------GTACAA
ATTTGAACCCTCAAACATCCTGCTGACCACA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AAATGTTTAGTCCTACCTTGCCACATGAGA
AGCTAGTCAACAGGCTTAAATAGTCGGGTCGTCCAGCTGCGATAAGCTTCAACCATCATTGCATCCTTAGTTAAGAAGAT
GGACTATTACTATTAATCTTCTCTGCTTATCACAAAGAAGATTAATAGTCATGGTCTATCTCCTTCACAAAGACAGCATT
GATGTTTGCACGGCTCTTTTTGAATCATAATGTGTCG-------------------------------------------
--------------------------------------------------------------------------------
----
>chr3A_182
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AAGTGAAACATGTTTCATGCCACATTTGTTTAAGCAGCCCTACACCATGTGTAGTGGCA
TTATTTGACCGTTCCGGAGCTCGGAACTCACCAAACCACCAACAAGTCAAGAACATCCGTCCCCTTGAATCCAGGGCCAC
GCCGATTCCGGGACAAGAATTTACCACCTCACGTCGCATTTCCTTTTCTCCTCGTGCTCGCTCGCTCGCCCGCTCGGCCC
CTCAAGTATACACTTGTCTAGCCTTCCACACGCTAGACAACAAACGCGAACCCGCGCCT-CCCCCTCTGCTCTGCCTGCG
CCCGCCCGCC----CGCTCACAGGCGCTGCCAGGCAGTGCCATTACTGCCCCCACCCGTCTCTCCGGGCCCGAGCACGCC
AG----GGAC-ACCGGATTCCTCGTCATGGCCGGTGACCGCCGCGGCGGCTCGCCCACGGCGGAGCGCCGGCGGGGGATC
CGGCGCCTCCTGCTGCCCCGCGGGGAGGCCTCCTCCTCCTCGTCGTCCTCGGTGCCGTTGCCTCCCCCGGCCGCGGCCGA
GGTAGGGCGGAGGAAGGGCTTCGCCGCCGCGGCGCTGCGCGGGCTGGGCTGCACGTCGGCCGCGGCCTCGCAGGCGTACG
CGCCAGGGGCGGGCTCCGCGGCTGCGGCGGCCGTGCGGTCCTCGGCCGACTGGCACGGGCGAAGGAAGAAAGGGAAGGAC
AAGAGGAAGGAGAGGGGAGGGGGAGGGGGAGGTGGAGGCGGCCTTGTGGGCGGAGGGATCGGCGGCGACGTGTGGTGCGC
CCCGGGGATACCGTTCGCCGCGGAGGCGTCGTCCGTGGACTGCGTGGTGGCGCGCCACCAGATGCTGGGGAGGGGCCGCG
GCGGCGACGCCGAGAGGCCGCACAGAGAGGTGAGTGGCAGATGCTTCCTGGCTTGTTTGGATCTGCTCGCGCTCACGGCT
TGTCCATTTCGCAGGATTGCTTGTTGTTCTTGCTGGTTAGTTATTCTCAGTTTTCTTAGCACCATTTCTCATGTGTGTCT
GTTTTTGTGCTTTTTTTGAACTCGTTTTTTGTCTGTTGCTGAAAAGAAAGCGTGTGTTCTCCTCCAAGCATTCAGATTTT
CTGGTGGCTGTTCTGCTCCGAAATCTTCCATTTCAATTTCACATTTGC--------------------------------
----------------------GCCCTTAAATGCAATGTTCTGTTTAAGCATCTGAAACAGTGCTC--CACGACCACGTT
TGATGCC----------------ACCGAATTCTCCGTATGCAAGTGGGATGAATGAATCTCTCGCCATGTTCTGCCAGCC
A----------------------------GCTGACGCTGCGTTTCTCATGTGACATCCATCCACAGCGGCCCTGCCTGTC
CCGGAGGGCGAGCATGCAGGAGCAGATGTCCTCGTCCTTCATGGAGTCGCCGCCGCCGCCGCCGCTGCATCACCTGGACG
GCCCCTTCTTCGGCGCCGACCTGCTCCCCTCCGCGCGCCTCCGCCGGATGCGCGGCTACCGCCCCTCCCCCGGCGGCCTC
GAAGAAGAGGTACGATACAGCACACCAGCCTCAGCACCAGTACTAAATACAGCACACCAGCCTCAGTACCAGTATCGCCT
TGCGTTTGCTTGCACGCTTGACCCGCATCTAATGCCTTCCCCGCCTCGGCGTCCAGCGGTCGGTGCGCGATTACGTTGCC
ATAAGATTCCCGTGCGTATGATAATGCTACTACTAGTCTAGCCAGGGTTGTCATTGTGTGTGATCTGACAATGTTCGTGC
CTGTAACCCCTGGGCGTTGGAGGTGGTTGACTTGCTT-------GCGCTAAACGTGACGTGAGACCGTGGCCTTCTCGTT
GGTTAACTAACGAACCCATGATTAAGCGGCTCCGGCCACGGAGCTCCGCTGCGCTGTGTGGCCATGGAGAGAGACCTGTC
GACCATGGCATGCAGATGCAGACTACCAAGTGCAAATGCTAGAGACACACTTGCGCTCAACCATG------------GCC
ACGCTGATGATGGTGACA--------------TGGTCGGTCAAATGGTGTTCAAACTA----TGCTGTTTCGGAACTCTG
GGGAAGGGGGGTGGTGGATGTGGAACACCTGAGCATGACAACCCATAATGTGACTTTATT--TTCATTCATTCTCTTTTC
GGCATGCTGTTCTAGCGGATCGTACAGTAGGTGGGGAATGGGGATGGGCATTCTGGTGGGTGAATGATGGCTTTCAGACT
TTGCCTCGGCGGTGCCCAGCTCGTCTGCCTGACTCGACTGGTCTTTTGCTGCTCAGGGGGGCCGGGCACCCTCATGATTT
GCCTGTTGCTTCAGTCATAATCAGATCTCATGTTGTGGCCATTCCTTGTGTATTTCGTGATCACCTGGCTGGTGAGGGCT
CTTATCTTATTGTTGGATGTGAAGATCCACCGGCG-TTTCTTGTCCCTGTAG---GCAACTATCAAAGATACGCAGAATG
CAGAAAGTGGGTGGGGCAATTTAACATGCTTAGGGCAGGTGACAT---TTCCTAATTGGTTGGTTGGAGGAAACCTCTTT
CTTGGTCTTGCCACTGACCCATGGGTCTAAGCGTGATACTAACTGAGA---AATGAGCTACCCATTTGCATGCTACCTGA
AGTATAACCTTTATAACCTTGTTGCATGTATTTTGGAGAGAAAATCGTAGAAAAATACACGATAAAGATAAAAGTATGAA
ATAATCAACATGTTATCCATGGACCTGAAAGTACCAATTTGTAGTAAGCCATATCATGTTGATAATGCTCACTTCTTTAT
TCTTTCATGCTTGTTACCATAAAGTGAACATTTTTAATGGAAGCATGCCCATCATCTAAGGTCATGGGTGTGCAGTGATT
TCTGTCTAATGAAATGCAAGCAGGCTATGTCAGTTTCGAATGCTTACCTTTCTCATATGTATGGCAGATCATGATGTTTC
AGACAAGAGTGTTGTTGGGAGGAATGAATGTGTATGATCGGTACCAGGATTGGCGCCTTGATGTCGACAACATGACTTAT
GAGGTCTGTCT-TCCTCCCCCCCTCCCGTGTTCTGTAACAACACTTGGCAT--------CATCATCGTGATGAACCAACT
TCGTCTTAACAGGAGTTGCTTGAGCTTGGAGAAAGAATAGGACATGTCAACACAGGGCTACGCGAGGATGAGATTGTTCG
CAACCTTAGGAAGGTCAAGCCTGATTCGTCATTCCAGTTTCCGACGGAAGTGGAGAAGAAATGCAGTATTTGTCAAGTAC
GCTCTCGC--------------AGTTC-CCGCTGCTTCTCTTTA-TATACATCGTTTGTGCAAGTGTTTAAACCGGGTCT
GTCTATTCTGATGGATGTTGCAGGAAGAGTTTGAAGCAAATGACGAGATGGGGAGGCTGGGCTGCGGCCACAGCTACCAT
GTTTACTGCATCAAGCAGTGGCTTTCTCAGAAGAACGTTTGCCCGGTTTGCAAGACCGCTGTCACCAAGACTTGAACAAG
TCCCGACCCCGGGCTACACCTATTGTGTACCTGGGTGGACCTAAAATGAAAAGTTTCACTTTGTTGCGTCTTGTACAGTC
CGTTACATGTATTATTGTTGTCTAAACACATCGTCCATTCTTTTGCATTTCCAGATAGAAATGCCATATTGCGGCCATCT
TTTATCAAACATATGG---GTTCTGATGCGCTCCTTTAAGATGATGATGTGATGTCCAAGCGTTTTGCAGAACAGACCTA
GGCTCAGGTTGCTGAATTGTGCTGTAGTGCTTATTTTTATACTAATTTGTAGTGAAAAATTAGCCGCAAAAGCAGACAAA
GCGGATCAAGCAAACACTGAAAATAGATAACGGGTTTCTAATCCACTGAATTTTATTAAACTTCTTGGGCTATCTACAAG
CAATAGCGAAATAT------------------------------------------------------------------
-------------TATTTCCTCTCTTGCATGAATGTGCGTGTCAGCGAGCCATGCGGATGTAAGAGCATTTACAGCAGCA
ATTTCCAAAATAGATGACCCAACTTTGTACTAACTTTAGTACAAAGTTGGATCATCTATTTTGGAACGGAAGGAGTACAA
ATTTGAACCCTCAAACATCCGCCGACCGGAAGGGCCTCAAATTTGGCCATTTGCAACCACAAACCCTGTCCAAATCACCT
AATACATGCAAACCCATGCACGTCGACCTTAGAAAGTGTAGTCCATGTTGGGCCGGCGGGACTGTTAATAAACACCAAAT
AAATAATTGTACTTAAGATTTTTCACATCCGTATTGGGCCAACGGGTTTCAAATGTTTAGTCCCACCTTGCCACATGAGG
AGCTAGTCGACTGGTTTAAATAGTCGGGCCGTCTAGCTGCGATAAGCTTCAGCCATCACTGCACTCTTAATTAAGAAGAT
GGACTATTACTATTAATCTTCTCTGCTTATTATAGAGAAGATTAATAGTCATGG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
--S---------------------S-------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
---S--------------------------S---------------------------SS--------------------
----------SSSS---------------------------------------------------S----------SSS-
-SSSSS--------------------------------------------------------------------------
-----------------S--S-------------------------------S----------------------S----
--------------------------------------------------------------------------------
-----S----------------------------S--------------------------S------------------
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
--------S--------------------------------------S---------S---------S-S-----S---S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS------------S-------------------------------SS------------
------SSSSSSSSSSSSSSSSS---------------------------------------S-S---------------
-----------------------------------------------------SS-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-------------------------------------S--
---------------------S-------S-------S---------------------------------SSS-SSSSS
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------S--S--------
--------------------------------------------------S-------SSSS------------------
--------------------------------------------------SS---------S------------------
--------------------------------S-----------------------------------------------
----------------------------------------S---------------------------------------
------------------------------------------------------------------S-------------
-----------------------S--SS-----S----S-------------SSS-------------------------
----S----------------------SSSS---S-SS--------------------------------------S---
-S----------SS-------------------------S--S----SS-SSS---------------------------
---------------------S----------------------------------------------------------
-----------S---------------------S----------S-----------------------------------
----------------S---------------------------------------------------------------
-----------------S--------------------------------------------------------------
----------------------------------------------------------S---------------------
-----S-------------S---------------------------------------S------------S-------
-S-------------------------------------------------------------------------S----
------S--------------------S----------------------------------------------------
--S---S----------SSS------SS----S--------S------SS-----------S------------S-----
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--SS------------------------------------------S-SS----------------S-------------
------------------------------S--------------------------------------------S----
-------------------------S-SS----S--S------S---------------------------------S--
-----------S------S------------------SS-----------------------------------------
------------S---S-------------------S-----------S-------S--S--------------SS----
-------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS---------------------------------------------------------------S---
--S-S----S-S-S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------SSS--SS-S--------------S---S--------------------------
-----S--SSSSS-SSSSS-------------------S--S-S-------S-----------S----S-----------
-----------S-----------S------------SS-------------SS---------------------S-----
-S-S-S----S-S----S-----S-------------------S-----------SS-SSSS-SS---------------
---------------------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_93
------------------------------------------------------------------------GAGGGCAT
TTGGTGTTTCTCG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----
>reverse_1378
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------GAGCAGCCTTGAATGCGATG-------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>forward_1088
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GGTGAGTGGCAGATGCTTCT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_2301
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------TATGCTGTTTCGGAGCTGGG
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>forward_1459
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
TGATGCTATGCCTTCGGGG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_3286
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----ATGTCTTCCTCCCTCCCTCC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_2177
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------CTC
AACCATGGCATGCAGAC---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_3300
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------TCCCTCCCGTGTAACAACAC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>forward_2521
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------CTTCTGCCTGACTCGACTGC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_4629
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CGCCACATGAGG
AGCTAGTC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
