Multiple sequence alignment - TraesCS3D01G260600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G260600 chr3D 100.000 2765 0 0 1 2765 362860927 362858163 0.000000e+00 5107.0
1 TraesCS3D01G260600 chr3B 94.359 1436 38 21 766 2197 472603600 472602204 0.000000e+00 2163.0
2 TraesCS3D01G260600 chr3B 96.728 489 8 1 286 774 472604261 472603781 0.000000e+00 808.0
3 TraesCS3D01G260600 chr3B 91.566 581 23 4 2211 2765 472602218 472601638 0.000000e+00 778.0
4 TraesCS3D01G260600 chr3B 93.886 229 14 0 36 264 472604473 472604245 2.040000e-91 346.0
5 TraesCS3D01G260600 chr3B 100.000 28 0 0 2559 2586 24745340 24745367 5.000000e-03 52.8
6 TraesCS3D01G260600 chr3A 92.368 1520 51 11 697 2197 483158761 483157288 0.000000e+00 2104.0
7 TraesCS3D01G260600 chr3A 84.480 567 50 12 2211 2765 483157302 483156762 2.440000e-145 525.0
8 TraesCS3D01G260600 chr3A 93.865 163 8 2 308 468 483159144 483158982 7.650000e-61 244.0
9 TraesCS3D01G260600 chr3A 88.517 209 12 4 497 702 483158990 483158791 2.750000e-60 243.0
10 TraesCS3D01G260600 chr3A 86.408 103 13 1 2654 2755 520186721 520186823 8.090000e-21 111.0
11 TraesCS3D01G260600 chr7D 93.299 194 12 1 1323 1516 576744983 576745175 4.510000e-73 285.0
12 TraesCS3D01G260600 chr1A 88.679 106 11 1 2653 2757 179409346 179409451 8.040000e-26 128.0
13 TraesCS3D01G260600 chr1A 87.879 99 11 1 2653 2750 155075253 155075351 6.260000e-22 115.0
14 TraesCS3D01G260600 chr1A 87.000 100 11 2 2658 2755 284146825 284146726 8.090000e-21 111.0
15 TraesCS3D01G260600 chr5B 91.111 90 7 1 2662 2750 466652396 466652485 1.340000e-23 121.0
16 TraesCS3D01G260600 chr4B 88.660 97 9 2 2661 2755 664400393 664400297 1.740000e-22 117.0
17 TraesCS3D01G260600 chr6A 85.586 111 11 4 2659 2764 72438304 72438414 8.090000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G260600 chr3D 362858163 362860927 2764 True 5107.00 5107 100.00000 1 2765 1 chr3D.!!$R1 2764
1 TraesCS3D01G260600 chr3B 472601638 472604473 2835 True 1023.75 2163 94.13475 36 2765 4 chr3B.!!$R1 2729
2 TraesCS3D01G260600 chr3A 483156762 483159144 2382 True 779.00 2104 89.80750 308 2765 4 chr3A.!!$R1 2457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 325 0.036765 TGTTAGCCATGTCACCGGTC 60.037 55.0 2.59 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 2053 0.736636 TCGACACACAAGACGACACT 59.263 50.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.399611 GCGCCAGCGACATTACAC 59.600 61.111 17.53 0.00 42.83 2.90
19 20 3.089784 CGCCAGCGACATTACACC 58.910 61.111 6.06 0.00 42.83 4.16
20 21 1.447838 CGCCAGCGACATTACACCT 60.448 57.895 6.06 0.00 42.83 4.00
21 22 1.421410 CGCCAGCGACATTACACCTC 61.421 60.000 6.06 0.00 42.83 3.85
22 23 0.391130 GCCAGCGACATTACACCTCA 60.391 55.000 0.00 0.00 0.00 3.86
23 24 1.743772 GCCAGCGACATTACACCTCAT 60.744 52.381 0.00 0.00 0.00 2.90
24 25 1.935873 CCAGCGACATTACACCTCATG 59.064 52.381 0.00 0.00 0.00 3.07
25 26 2.621338 CAGCGACATTACACCTCATGT 58.379 47.619 0.00 0.00 46.06 3.21
26 27 3.002791 CAGCGACATTACACCTCATGTT 58.997 45.455 0.00 0.00 43.19 2.71
27 28 3.436704 CAGCGACATTACACCTCATGTTT 59.563 43.478 0.00 0.00 43.19 2.83
28 29 4.072131 AGCGACATTACACCTCATGTTTT 58.928 39.130 0.00 0.00 43.19 2.43
29 30 4.154195 AGCGACATTACACCTCATGTTTTC 59.846 41.667 0.00 0.00 43.19 2.29
30 31 4.154195 GCGACATTACACCTCATGTTTTCT 59.846 41.667 0.00 0.00 43.19 2.52
31 32 5.671329 GCGACATTACACCTCATGTTTTCTC 60.671 44.000 0.00 0.00 43.19 2.87
32 33 5.408299 CGACATTACACCTCATGTTTTCTCA 59.592 40.000 0.00 0.00 43.19 3.27
33 34 6.401474 CGACATTACACCTCATGTTTTCTCAG 60.401 42.308 0.00 0.00 43.19 3.35
34 35 5.182001 ACATTACACCTCATGTTTTCTCAGC 59.818 40.000 0.00 0.00 43.19 4.26
35 36 2.508526 ACACCTCATGTTTTCTCAGCC 58.491 47.619 0.00 0.00 38.98 4.85
36 37 2.158623 ACACCTCATGTTTTCTCAGCCA 60.159 45.455 0.00 0.00 38.98 4.75
37 38 3.087031 CACCTCATGTTTTCTCAGCCAT 58.913 45.455 0.00 0.00 0.00 4.40
38 39 3.087031 ACCTCATGTTTTCTCAGCCATG 58.913 45.455 0.00 0.00 36.80 3.66
61 62 1.335810 CATCAATCCTCAACCATGCCG 59.664 52.381 0.00 0.00 0.00 5.69
104 105 5.438761 ACAACAACTAAAGTCCATGCTTC 57.561 39.130 0.00 0.00 0.00 3.86
111 112 7.039504 ACAACTAAAGTCCATGCTTCAAATGAT 60.040 33.333 0.00 0.00 0.00 2.45
113 114 6.888632 ACTAAAGTCCATGCTTCAAATGATCT 59.111 34.615 0.00 0.00 0.00 2.75
118 119 6.039493 AGTCCATGCTTCAAATGATCTCAATC 59.961 38.462 0.00 0.00 0.00 2.67
121 122 5.729974 TGCTTCAAATGATCTCAATCTCG 57.270 39.130 0.00 0.00 32.75 4.04
128 129 8.754230 TCAAATGATCTCAATCTCGTATCATC 57.246 34.615 0.00 0.00 36.52 2.92
133 134 7.815641 TGATCTCAATCTCGTATCATCTCTTC 58.184 38.462 0.00 0.00 32.75 2.87
155 156 9.621629 TCTTCCTTGAAACTTAGTTTTGTATCA 57.378 29.630 11.88 2.20 35.77 2.15
247 248 7.386573 CACGATGTTATGGTAAATATGCCAGTA 59.613 37.037 0.00 0.00 45.07 2.74
248 249 7.934665 ACGATGTTATGGTAAATATGCCAGTAA 59.065 33.333 0.00 0.00 45.07 2.24
249 250 8.227791 CGATGTTATGGTAAATATGCCAGTAAC 58.772 37.037 0.00 0.00 45.07 2.50
250 251 7.485418 TGTTATGGTAAATATGCCAGTAACG 57.515 36.000 0.00 0.00 45.07 3.18
251 252 7.273712 TGTTATGGTAAATATGCCAGTAACGA 58.726 34.615 0.00 0.00 45.07 3.85
252 253 7.769507 TGTTATGGTAAATATGCCAGTAACGAA 59.230 33.333 0.00 0.00 45.07 3.85
253 254 8.614346 GTTATGGTAAATATGCCAGTAACGAAA 58.386 33.333 0.00 0.00 45.07 3.46
254 255 7.633193 ATGGTAAATATGCCAGTAACGAAAA 57.367 32.000 0.00 0.00 45.07 2.29
255 256 6.844254 TGGTAAATATGCCAGTAACGAAAAC 58.156 36.000 0.00 0.00 36.27 2.43
256 257 6.655848 TGGTAAATATGCCAGTAACGAAAACT 59.344 34.615 0.00 0.00 36.27 2.66
257 258 7.823310 TGGTAAATATGCCAGTAACGAAAACTA 59.177 33.333 0.00 0.00 36.27 2.24
258 259 8.118607 GGTAAATATGCCAGTAACGAAAACTAC 58.881 37.037 0.00 0.00 0.00 2.73
259 260 7.916914 AAATATGCCAGTAACGAAAACTACT 57.083 32.000 0.00 0.00 0.00 2.57
261 262 7.998753 ATATGCCAGTAACGAAAACTACTAC 57.001 36.000 0.00 0.00 0.00 2.73
262 263 4.229096 TGCCAGTAACGAAAACTACTACG 58.771 43.478 0.00 0.00 0.00 3.51
263 264 3.059966 GCCAGTAACGAAAACTACTACGC 59.940 47.826 0.00 0.00 0.00 4.42
264 265 3.609807 CCAGTAACGAAAACTACTACGCC 59.390 47.826 0.00 0.00 0.00 5.68
265 266 3.609807 CAGTAACGAAAACTACTACGCCC 59.390 47.826 0.00 0.00 0.00 6.13
266 267 2.084610 AACGAAAACTACTACGCCCC 57.915 50.000 0.00 0.00 0.00 5.80
267 268 1.260544 ACGAAAACTACTACGCCCCT 58.739 50.000 0.00 0.00 0.00 4.79
268 269 1.203287 ACGAAAACTACTACGCCCCTC 59.797 52.381 0.00 0.00 0.00 4.30
269 270 1.796617 CGAAAACTACTACGCCCCTCG 60.797 57.143 0.00 0.00 45.38 4.63
270 271 0.108472 AAAACTACTACGCCCCTCGC 60.108 55.000 0.00 0.00 43.23 5.03
271 272 1.252904 AAACTACTACGCCCCTCGCA 61.253 55.000 0.00 0.00 43.23 5.10
272 273 1.252904 AACTACTACGCCCCTCGCAA 61.253 55.000 0.00 0.00 43.23 4.85
273 274 1.252904 ACTACTACGCCCCTCGCAAA 61.253 55.000 0.00 0.00 43.23 3.68
274 275 0.108520 CTACTACGCCCCTCGCAAAA 60.109 55.000 0.00 0.00 43.23 2.44
275 276 0.321021 TACTACGCCCCTCGCAAAAA 59.679 50.000 0.00 0.00 43.23 1.94
324 325 0.036765 TGTTAGCCATGTCACCGGTC 60.037 55.000 2.59 0.00 0.00 4.79
462 465 4.296690 CGAGTCGGTTGTAATAAGGGATC 58.703 47.826 4.10 0.00 0.00 3.36
720 760 2.656651 CGCCGCGAAGGAGAGATG 60.657 66.667 8.23 0.00 43.02 2.90
750 790 6.463995 ACATGCCTTTTTGTTAGACAAGAA 57.536 33.333 0.00 0.00 39.53 2.52
774 814 6.583562 AGGAGATCGGAGTAATTAAAAGTGG 58.416 40.000 0.00 0.00 0.00 4.00
775 815 5.758784 GGAGATCGGAGTAATTAAAAGTGGG 59.241 44.000 0.00 0.00 0.00 4.61
776 816 5.681639 AGATCGGAGTAATTAAAAGTGGGG 58.318 41.667 0.00 0.00 0.00 4.96
893 1122 1.007387 CAGGTTTTTCGGCTGCCAC 60.007 57.895 20.29 8.55 0.00 5.01
1796 2044 1.090728 TGCGCGCAGATGGATTTTTA 58.909 45.000 33.09 1.22 0.00 1.52
1797 2045 1.675483 TGCGCGCAGATGGATTTTTAT 59.325 42.857 33.09 0.00 0.00 1.40
1798 2046 2.046313 GCGCGCAGATGGATTTTTATG 58.954 47.619 29.10 0.00 0.00 1.90
1799 2047 2.541588 GCGCGCAGATGGATTTTTATGT 60.542 45.455 29.10 0.00 0.00 2.29
1800 2048 3.291585 CGCGCAGATGGATTTTTATGTC 58.708 45.455 8.75 0.00 0.00 3.06
1801 2049 3.242706 CGCGCAGATGGATTTTTATGTCA 60.243 43.478 8.75 0.00 0.00 3.58
1802 2050 4.555313 CGCGCAGATGGATTTTTATGTCAT 60.555 41.667 8.75 0.00 0.00 3.06
1803 2051 4.678287 GCGCAGATGGATTTTTATGTCATG 59.322 41.667 0.30 0.00 0.00 3.07
1804 2052 5.734220 GCGCAGATGGATTTTTATGTCATGT 60.734 40.000 0.30 0.00 0.00 3.21
1805 2053 6.513230 GCGCAGATGGATTTTTATGTCATGTA 60.513 38.462 0.30 0.00 0.00 2.29
1813 2064 7.064134 TGGATTTTTATGTCATGTAGTGTCGTC 59.936 37.037 0.00 0.00 0.00 4.20
1891 2142 7.604657 AGATTTAATCTAGGGATGACGAAGT 57.395 36.000 5.56 0.00 40.86 3.01
1892 2143 8.707796 AGATTTAATCTAGGGATGACGAAGTA 57.292 34.615 5.56 0.00 38.60 2.24
1973 2224 6.898041 TGTTCTTGCACTCAACATGTAATAC 58.102 36.000 0.00 0.00 0.00 1.89
1974 2225 6.484977 TGTTCTTGCACTCAACATGTAATACA 59.515 34.615 0.00 0.00 0.00 2.29
1975 2226 7.174772 TGTTCTTGCACTCAACATGTAATACAT 59.825 33.333 0.00 0.00 39.91 2.29
1976 2227 7.686438 TCTTGCACTCAACATGTAATACATT 57.314 32.000 2.67 0.00 36.53 2.71
1977 2228 8.785329 TCTTGCACTCAACATGTAATACATTA 57.215 30.769 2.67 0.00 36.53 1.90
1978 2229 8.664798 TCTTGCACTCAACATGTAATACATTAC 58.335 33.333 2.67 5.35 36.53 1.89
1979 2230 8.560355 TTGCACTCAACATGTAATACATTACT 57.440 30.769 2.67 0.00 42.32 2.24
1980 2231 9.660180 TTGCACTCAACATGTAATACATTACTA 57.340 29.630 2.67 1.71 42.32 1.82
1981 2232 9.313118 TGCACTCAACATGTAATACATTACTAG 57.687 33.333 2.67 2.73 42.32 2.57
1982 2233 9.314321 GCACTCAACATGTAATACATTACTAGT 57.686 33.333 2.67 0.00 42.32 2.57
2241 2492 3.795623 ATTGCAAGATTGTGCTCCATC 57.204 42.857 4.94 0.00 45.17 3.51
2380 2642 3.188159 ACAGAACTTTCCACGTTAGCA 57.812 42.857 0.00 0.00 0.00 3.49
2408 2670 7.492344 ACCCGTACATAAAAAGATTTACGTAGG 59.508 37.037 0.00 0.00 36.27 3.18
2479 2741 2.294233 GCATGGATGGCGTCATAAATGT 59.706 45.455 19.77 0.00 32.84 2.71
2488 2750 4.069304 GGCGTCATAAATGTAAGGGCATA 58.931 43.478 0.00 0.00 0.00 3.14
2685 2964 9.614792 AATACTCACTCTGTTCCCAAATATAAC 57.385 33.333 0.00 0.00 0.00 1.89
2686 2965 6.415573 ACTCACTCTGTTCCCAAATATAACC 58.584 40.000 0.00 0.00 0.00 2.85
2687 2966 5.751586 TCACTCTGTTCCCAAATATAACCC 58.248 41.667 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.817834 TGTAATGTCGCTGGCGCC 60.818 61.111 22.73 22.73 39.59 6.53
1 2 2.399611 GTGTAATGTCGCTGGCGC 59.600 61.111 10.28 0.00 39.59 6.53
2 3 1.421410 GAGGTGTAATGTCGCTGGCG 61.421 60.000 8.80 8.80 41.35 5.69
3 4 0.391130 TGAGGTGTAATGTCGCTGGC 60.391 55.000 0.00 0.00 0.00 4.85
4 5 1.935873 CATGAGGTGTAATGTCGCTGG 59.064 52.381 0.00 0.00 0.00 4.85
5 6 2.621338 ACATGAGGTGTAATGTCGCTG 58.379 47.619 0.00 0.00 39.91 5.18
6 7 3.334583 AACATGAGGTGTAATGTCGCT 57.665 42.857 0.00 0.00 41.14 4.93
7 8 4.154195 AGAAAACATGAGGTGTAATGTCGC 59.846 41.667 0.00 0.00 41.14 5.19
8 9 5.408299 TGAGAAAACATGAGGTGTAATGTCG 59.592 40.000 0.00 0.00 41.14 4.35
9 10 6.621596 GCTGAGAAAACATGAGGTGTAATGTC 60.622 42.308 0.00 0.00 41.14 3.06
10 11 5.182001 GCTGAGAAAACATGAGGTGTAATGT 59.818 40.000 0.00 0.00 41.14 2.71
11 12 5.392380 GGCTGAGAAAACATGAGGTGTAATG 60.392 44.000 0.00 0.00 41.14 1.90
12 13 4.702131 GGCTGAGAAAACATGAGGTGTAAT 59.298 41.667 0.00 0.00 41.14 1.89
13 14 4.072131 GGCTGAGAAAACATGAGGTGTAA 58.928 43.478 0.00 0.00 41.14 2.41
14 15 3.072330 TGGCTGAGAAAACATGAGGTGTA 59.928 43.478 0.00 0.00 41.14 2.90
15 16 2.158623 TGGCTGAGAAAACATGAGGTGT 60.159 45.455 0.00 0.00 44.84 4.16
16 17 2.507484 TGGCTGAGAAAACATGAGGTG 58.493 47.619 0.00 0.00 0.00 4.00
17 18 2.957402 TGGCTGAGAAAACATGAGGT 57.043 45.000 0.00 0.00 0.00 3.85
18 19 3.349927 TCATGGCTGAGAAAACATGAGG 58.650 45.455 0.00 0.00 43.23 3.86
30 31 1.493446 AGGATTGATGCTCATGGCTGA 59.507 47.619 7.54 0.00 42.39 4.26
31 32 1.880675 GAGGATTGATGCTCATGGCTG 59.119 52.381 7.52 0.00 43.73 4.85
32 33 2.273538 GAGGATTGATGCTCATGGCT 57.726 50.000 7.52 0.00 43.73 4.75
38 39 2.034305 GCATGGTTGAGGATTGATGCTC 59.966 50.000 5.65 5.65 44.42 4.26
61 62 0.810648 TGCCATCTTCAACCATTCGC 59.189 50.000 0.00 0.00 0.00 4.70
104 105 8.760103 AGATGATACGAGATTGAGATCATTTG 57.240 34.615 0.00 0.00 37.37 2.32
111 112 6.303054 AGGAAGAGATGATACGAGATTGAGA 58.697 40.000 0.00 0.00 0.00 3.27
113 114 6.547510 TCAAGGAAGAGATGATACGAGATTGA 59.452 38.462 0.00 0.00 0.00 2.57
118 119 6.568869 AGTTTCAAGGAAGAGATGATACGAG 58.431 40.000 0.00 0.00 32.52 4.18
121 122 9.660180 AACTAAGTTTCAAGGAAGAGATGATAC 57.340 33.333 0.00 0.00 0.00 2.24
159 160 4.344679 TGAGATTTTGCTGTGAACCCAATT 59.655 37.500 0.00 0.00 0.00 2.32
219 220 6.544197 TGGCATATTTACCATAACATCGTGTT 59.456 34.615 8.15 8.15 43.88 3.32
241 242 3.059966 GCGTAGTAGTTTTCGTTACTGGC 59.940 47.826 0.00 0.00 32.64 4.85
247 248 1.620323 AGGGGCGTAGTAGTTTTCGTT 59.380 47.619 0.00 0.00 0.00 3.85
248 249 1.203287 GAGGGGCGTAGTAGTTTTCGT 59.797 52.381 0.00 0.00 0.00 3.85
249 250 1.796617 CGAGGGGCGTAGTAGTTTTCG 60.797 57.143 0.00 0.00 34.64 3.46
250 251 1.918595 CGAGGGGCGTAGTAGTTTTC 58.081 55.000 0.00 0.00 34.64 2.29
251 252 0.108472 GCGAGGGGCGTAGTAGTTTT 60.108 55.000 0.00 0.00 43.41 2.43
252 253 1.514553 GCGAGGGGCGTAGTAGTTT 59.485 57.895 0.00 0.00 43.41 2.66
253 254 3.204418 GCGAGGGGCGTAGTAGTT 58.796 61.111 0.00 0.00 43.41 2.24
282 283 7.799784 ACATATGCGTAGTAGTTTTCGTTTTT 58.200 30.769 1.58 0.00 0.00 1.94
283 284 7.355332 ACATATGCGTAGTAGTTTTCGTTTT 57.645 32.000 1.58 0.00 0.00 2.43
284 285 6.956299 ACATATGCGTAGTAGTTTTCGTTT 57.044 33.333 1.58 0.00 0.00 3.60
324 325 0.255604 TGGATATGTGCACCCACTGG 59.744 55.000 15.69 0.00 42.54 4.00
480 483 1.201414 GGATCCACGCCGTCAATTTTT 59.799 47.619 6.95 0.00 0.00 1.94
491 494 1.750193 TGGAAATTGAGGATCCACGC 58.250 50.000 15.82 3.29 38.30 5.34
710 750 4.643784 GGCATGTTCAATTCATCTCTCCTT 59.356 41.667 0.00 0.00 0.00 3.36
720 760 7.437862 TGTCTAACAAAAAGGCATGTTCAATTC 59.562 33.333 0.00 0.00 40.14 2.17
750 790 6.408206 CCCACTTTTAATTACTCCGATCTCCT 60.408 42.308 0.00 0.00 0.00 3.69
774 814 4.103311 ACCATTTCTCTGGCTTATCTACCC 59.897 45.833 0.00 0.00 40.15 3.69
775 815 5.297569 ACCATTTCTCTGGCTTATCTACC 57.702 43.478 0.00 0.00 40.15 3.18
776 816 4.985409 CGACCATTTCTCTGGCTTATCTAC 59.015 45.833 0.00 0.00 40.15 2.59
893 1122 2.189499 GGGCTGGCTTTATGCTCCG 61.189 63.158 0.00 0.00 42.39 4.63
1796 2044 4.237724 CACAAGACGACACTACATGACAT 58.762 43.478 0.00 0.00 0.00 3.06
1797 2045 3.067601 ACACAAGACGACACTACATGACA 59.932 43.478 0.00 0.00 0.00 3.58
1798 2046 3.425525 CACACAAGACGACACTACATGAC 59.574 47.826 0.00 0.00 0.00 3.06
1799 2047 3.067601 ACACACAAGACGACACTACATGA 59.932 43.478 0.00 0.00 0.00 3.07
1800 2048 3.381045 ACACACAAGACGACACTACATG 58.619 45.455 0.00 0.00 0.00 3.21
1801 2049 3.639538 GACACACAAGACGACACTACAT 58.360 45.455 0.00 0.00 0.00 2.29
1802 2050 2.540157 CGACACACAAGACGACACTACA 60.540 50.000 0.00 0.00 0.00 2.74
1803 2051 2.041966 CGACACACAAGACGACACTAC 58.958 52.381 0.00 0.00 0.00 2.73
1804 2052 1.941975 TCGACACACAAGACGACACTA 59.058 47.619 0.00 0.00 0.00 2.74
1805 2053 0.736636 TCGACACACAAGACGACACT 59.263 50.000 0.00 0.00 0.00 3.55
1813 2064 5.639506 AGAAATTACCAGATCGACACACAAG 59.360 40.000 0.00 0.00 0.00 3.16
1880 2131 6.157211 ACGATCCAATAATACTTCGTCATCC 58.843 40.000 0.00 0.00 35.09 3.51
1881 2132 7.639162 AACGATCCAATAATACTTCGTCATC 57.361 36.000 0.00 0.00 38.72 2.92
1884 2135 8.738199 TCATAACGATCCAATAATACTTCGTC 57.262 34.615 0.00 0.00 38.72 4.20
1885 2136 9.706691 AATCATAACGATCCAATAATACTTCGT 57.293 29.630 0.00 0.00 41.11 3.85
2021 2272 3.136763 AGTCACTTGCATGAAGACACTG 58.863 45.455 21.89 5.62 35.42 3.66
2212 2463 9.748708 GGAGCACAATCTTGCAATATAAATTAA 57.251 29.630 0.00 0.00 45.62 1.40
2213 2464 8.911965 TGGAGCACAATCTTGCAATATAAATTA 58.088 29.630 0.00 0.00 45.62 1.40
2214 2465 7.784037 TGGAGCACAATCTTGCAATATAAATT 58.216 30.769 0.00 0.00 45.62 1.82
2215 2466 7.350744 TGGAGCACAATCTTGCAATATAAAT 57.649 32.000 0.00 0.00 45.62 1.40
2216 2467 6.772360 TGGAGCACAATCTTGCAATATAAA 57.228 33.333 0.00 0.00 45.62 1.40
2217 2468 6.293571 CGATGGAGCACAATCTTGCAATATAA 60.294 38.462 0.00 0.00 45.62 0.98
2218 2469 5.179929 CGATGGAGCACAATCTTGCAATATA 59.820 40.000 0.00 0.00 45.62 0.86
2219 2470 4.023450 CGATGGAGCACAATCTTGCAATAT 60.023 41.667 0.00 0.00 45.62 1.28
2220 2471 3.313249 CGATGGAGCACAATCTTGCAATA 59.687 43.478 0.00 0.00 45.62 1.90
2221 2472 2.098607 CGATGGAGCACAATCTTGCAAT 59.901 45.455 0.00 0.00 45.62 3.56
2222 2473 1.469703 CGATGGAGCACAATCTTGCAA 59.530 47.619 0.00 0.00 45.62 4.08
2223 2474 1.089112 CGATGGAGCACAATCTTGCA 58.911 50.000 0.00 0.00 45.62 4.08
2224 2475 1.372582 TCGATGGAGCACAATCTTGC 58.627 50.000 0.00 0.00 43.34 4.01
2241 2492 2.163818 TTCCAGTGTGCCTTAGTTCG 57.836 50.000 0.00 0.00 0.00 3.95
2380 2642 6.650390 ACGTAAATCTTTTTATGTACGGGTGT 59.350 34.615 10.39 0.00 44.04 4.16
2408 2670 6.111768 CTCCTACAATGAGCAATGTTACAC 57.888 41.667 0.00 0.00 0.00 2.90
2479 2741 9.725019 CAATCTTATCAACACTATATGCCCTTA 57.275 33.333 0.00 0.00 0.00 2.69
2575 2843 6.569179 TTCTGTTTTGGTTGATAGCTTACC 57.431 37.500 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.