>input_sequence_69471
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-----------------------------------------------ATGGACGCGCAGGCCGCCGTGACCCGTGACGCC
GTCGGCCTCGACGACCCGCTCGTCGCCCTCACCCTCGGATCCATCTACGCCGCCGCCCCGACCCCGCCGCCCAAGCCGCG
GCGCCCCTCTCCTCCGACCCCTCCGCCTTCCCAGCCGGCGTCCGCCACCCGCCGCCGCCTCAACGACTCCGCCCCCGTCC
AGCGCCGCCGCCCGAGAAACGAGCCGCCGTCCGACGACGACGCCGCCGCCGCGGACGGGGCGCCGCCGCCGTTCCCGTGG
GCCACGGAGCGGCCCGCGCGGCACGACACCCTGGACAGCCTGCTGCGCCGGGGCGTCACGTCCGTCGAGGGCGAGGCCCG
GTGCAAGCGCTGCAGCCGCACGGTCACCGTGGCGTACGAGCTGGCGCCCAAGTTCCGGGAGGTGCGCGAGTTCGTCGTCG
CCAACCGGCACGCGTTCGACGACCGCGCCCCGGACGCGTGGATGTACCCGGTGCTGCCCGACTGCGCGGCGTGCGGGGAG
AAGCGCTGCGTGTGGCCGTGGATCGCCGACGACAAGGGCGAGATCAACTGGCTGTTCCTCCTGCTGGGCCAGATGCTGGG
CTGCTGCACGCTGGAGCAGCTCAAGTACTTCTGCAAGAACACCGGCCGCCACCGGACAGGCGCCAAGAACCGGGTCCTCT
ACTACGCCTTCCTGGAGATGTGCAGGCAGCTCGAGCCGCGCGGGCCGTTCGATGACACCGTCGCCGACGGCAACGGGTTC
CTGCACTCCTGA--------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G260600
GGCGCCAGCGACATTACACCTCATGTTTTCTCAGCCATGAGCATCAATCCTCAACCATGCCGCGAATGGTTGAAGATGGC
ATACAACAACTAAAGTCCATGCTTCAAATGATCTCAATCTCGTATCATCTCTTCCTTGAAACTTAGTTTTGTATCAAAAA
ATTGGGTTCACAGCAAAATCTCAATAAGACAGAGTGCATGTTATTTTTTTAAATAAAAAAACACGATGTTATGGTAAATA
TGCCAGTAACGAAAACTACTACGCCCCTCGCAAAAAAAAAAAAAAAACGAAAACTACTACGCATATGTTAGCCATGTCAC
CGGTCCAGTGGGTGCACATATCCATCCGGTGCACCGGATTTTTGTTCCGTGACCAGAG--GGTGTTCGCCCAAGGTGCGG
GCATGCATGTCGGTGCGAGAGCTAACCGGACGCAAAGCACGGCGAGTCGGTTGTAATAAGGGATCCTCAAAAAAAAAATT
AAAAAAATTGACGGCGTGGATCCTCAATTTCCAACATCACCGCGGCAGCCCGCAACAGAAAGGCAGGCACAGATCCACCT
CCACGCCTCCACGGGATAAGCATTACGGAGACACGCATTGCATTGCC-TGCTAGGGGCCAGCCAGCCAGTG-GGGTCGAC
CGAACCAACATCCGGGACACGAGGAAAGAAATCCCAGCCATTCTTCACTGACACCCGGGGCCAAGGG-------------
----------------------CGCCGCGAAGGAGAGATGAATTGAACATGCCTTTTTGTTAGACAAGAAGGAGATCGGA
GTAATTAAAAGTGGGG----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TAGATAAGCCAGAGAAATGGTCGGAAGACAATCGT
ATCTTGCATGTCCAAAAGATTCTCGCGTGGTTGTTAGAACCAACCACCTCGCCTCACCATCGCCAGGTTTTTCGGCTGCC
AC-----GGAGCATAAAGCCAGCCCGCCAT------AAACCCCTCGC--------CGCCCGGTCACCACCACACAGAGTA
GCGGCGGCGAGCGCTCGGTCGCGTTGGGTCGGGGGCTGTGAGAGAGAATGGACGCGCAGGCCGCCGTGACCCGTGACGCC
GTCGGCCTCGACGACCCGCTCGTCGCCCTCACCCTCGGATCCATCTACGCCGCCGCCCCGACCCCGCCGCCCAAGCCGCG
GCGCCCCTCTCCTCCGACCCCTCCGCCTTCCCAGCCGGCGTCCGCCACCCGCCGCCGCCTCAACGACTCCGCCCCCGTCC
AGCGCCGCCGCCCGAGAAACGAGCCGCCGTCCGACGACGACGCCGCCGCCGCGGACGGGGCGCCGCCGCCGTTCCCGTGG
GCCACGGAGCGGCCCGCGCGGCACGACACCCTGGACAGCCTGCTGCGCCGGGGCGTCACGTCCGTCGAGGGCGAGGCCCG
GTGCAAGCGCTGCAGCCGCACGGTCACCGTGGCGTACGAGCTGGCGCCCAAGTTCCGGGAGGTGCGCGAGTTCGTCGTCG
CCAACCGGCACGCGTTCGACGACCGCGCCCCGGACGCGTGGATGTACCCGGTGCTGCCCGACTGCGCGGCGTGCGGGGAG
AAGCGCTGCGTGTGGCCGTGGATCGCCGACGACAAGGGCGAGATCAACTGGCTGTTCCTCCTGCTGGGCCAGATGCTGGG
CTGCTGCACGCTGGAGCAGCTCAAGTACTTCTGCAAGAACACCGGCCGCCACCGGACAGGCGCCAAGAACCGGGTCCTCT
ACTACGCCTTCCTGGAGATGTGCAGGCAGCTCGAGCCGCGCGGGCCGTTCGATGACACCGTCGCCGACGGCAACGGGTTC
CTGCACTCCTGATCTACCGGCCCCTGCGCGCAGATGGATTTTTATGTCATGTA---GTGTCGTCTTGTGTGTCGATCTGG
TAATTTCTAGGGATGACGAGGAAAGAACAACTTCTCTAGATTTAATCTAGGGATGACGAAGTATTATTGGATCGTTATGA
TTATTATTTATCATGAGTTTTGATGAAAATGATTAATCATGTTCTTGCACTCAACATGTAATACATTACTAGTAACAAAA
ATGTAGTAATACTACATTACTACATTATCTGCAGTGTCTTCATGCAAGTGACTCTATTGCCGAGATATTTTTTTTGCCCC
ATTTATTTATTTACAATATTATATTATTTACCGATTAATTTGGCTCTTGTATTGGAGAAGGAAACTCACTTGGCATTCTT
GGCTAGGATTGGCAGTGTTTAGCATGGAGATCAATTAATTTATATTGTTCTCGCAAAAAAAATTAATTTATATTGCAAGA
TTGTGCTCCATCGAACTAA--GGCACACTGGAATGCTAGACCAACAAGCGTGC---------CTACGAAACTTTCCATCC
CTAATTAATCTCCCCCAACCCTCTGAATTTCACCGGGTGAGGCCCTTGTTCTTTTTTTCAAACAGAACTTTCCACGTTAG
CACACCCGTACATAAAAAGATTTACGTAGGTGTAACATTGCTCATTGTAGGAGCATGGATGGTTCTTCTAAAAAAAAGAG
CATGGATGGCGTCATAAATGTAAGGGCATATAGTGTTGATAAGATTGGCATTTT------ATATGAAGTCCACGTCATCT
AGAAAAGGTAACAAAACATGTTATACACCAGGCGGCAAGTCTG-----------GTAAGCTATCAACCAAAACAGAAAAT
AAATAAAACATATTATAAAATTTATTATCTCTTAAGTGTTATATTTTAGTGTTCATAAATACTCACTCTGTTCCCAAATA
TAACCCTTTTTAGAGATTCT-AAATAGACTATATACGAAGCAAAATGAATGAATCTACACTCTAAAATATATCTGTCTGT
ACAA
>chr3B_36
CATA-----------------------------------AGCATCAATCCTCAACCATGCCACGAATGGTTGAAGATGGC
ATACAACAACTAAAGTCCATGCTTTAAATGAACCCAATTTCATATCATTTCTTTCTTGAAACTTAGTTTTGTATCCAAAT
ATTGGGTTCACAGCAAAATCTCAATAAGACAGAGTGCATGTTATTTTTGTAAATAAAAACACACGATGTTATGGTAAATA
TTCCAGT--------------------------------------AACGAAAACTACTACGCATATGTTAGCCATGTCAC
CGGTGCAGTGGGTGCACATATCCATCCGGTGCACCGGATTTTTGTTCCGTGACCAGAG--GGTGTTCGCCCAAGGTGCGG
GCATGCATGTCGGTGCGAGAGCTAACCGGACGCAAAGCACGGCGAGTCGGTTGTAATAAGGGATTCTCAAAAAAG-----
---AAAATTGACGACGTGGATCCTCAATTTCCAACATCACCGCGGCAGCCCGCAACAGAAAGGCAGGCACATATCCACCT
CCACGCCTCCACGGGATAAGCATTACGGAGACACGCATTGCATTGCC-TGCTAGGGGCCAGCCAGCCAGTG-GGGTCGAC
CGAACCAACATCCGGGACACGAGGAAAGAAATCCCAGCCATTCTTCACTGACACCCGGGGCCAAGGG-------------
----------------------CGCCGCGGAGGAGAGATAAATTGAACATGCCTTTTTGTTAGACAAGAGGGAGATCGGA
GTAATTAAAAGTGCAAAAATGCTACACGTACAGGCTCATTCTACAGGTTTTTACAGGTTAAAGACCATTCGCTCTTCTAA
TTGGCCCCCCCTGATTTTCACTGGTGGGCCCGTGCATCTTAATCAATCCTCGGCCAATCACTATTAAGCAACCTGTAAAC
CTCCTGTAAAACTCCGTACGTCTAGCAAAGCTCTTAAAAGTGGGATAGATAAGCCAGAGAAATGGTCGGAAGACAATCGT
ATCTTGCATGTCCAAAAGATTCTCGCGTGGTTGTTAGAACCAACCACCTCGCCTCACCATCGCCAGGTTTTTCGGCTGCC
AT-----GGAGCATAAAGCCAGCCCGCCAT------AAACCCCTCGC--------CGCCCGGTCACCACCACACAGAGTA
GCGGCGGCGAGCGCTTGGTCGTGTTGGGTCGGGGGCTGC----GAGAATGGACGCGCAGGCCGCCGTGACCCGTGACGCC
GTCGGCCTCGACGACCCGCTCGTCGCCCTCACCCTCGGATCCATCTACGCCGCCGCCCCGACCCCGCCGCCCAAGCCGTG
GCGCCCCTCTCCTCCGACCCCTCCGCCTTCCCAGCCGGCGTCCGCCACCCGCCGCCGCCTCAACGACTCCGCCACCGGCC
AGCGCCGCCGCGCGAGCAACGAGCCGCCATCCGACGACGACGACGCCGCCGCGGACGGGCTGCCGCCGCCGTTCCCGTGG
GCCACGGAGCGGCCCGCGCGGCACGACCCCCTGGACAGCCTGCTGCGCCGGGGCGTCACGTCCGTCGAGGGCGAGACCCG
GTGCAGGCGCTGCAACCGCACGTCGACCGTGGCGTACGAGCTGGCGCCCAAGTTCCAGGAGGTGCGCCAGTTCGTCGTCG
CCAACCGGCACTCGTTCGACGACCGCGCCCCGGACGCGTGGATGAACCCGGTGCTGCTCGACTGCGCTGCGTGCGGGGAG
AAGCGCTGCGTGTGGCCGGTGATCGCCGCCGACAAGGGCGAGATCAACTGGCTGTTCCTCCTGCTGGGCCAGATGCTGGG
CTGCTGCACGCTGGAGCAGCTCAAGTACTTCTGCAAGAACACCGGCCGCCACCGGACCGGCGCCAAGAACCGGGTCCTCT
ACTACGCCTTCCTGGAGATGTGCAGGCAGCTCGAGCCGCGCGGGCCGTTCGATGACACCGTCGCCGACGGTAACGGGTTC
CTGCACTCCTGATCTACCGGCCCCTGCGCGCAGATGGATTTTTTATGTCATGTGGTGTGTCGTGTTGTGTGTCGATCTGG
TAATTTCTAGGGATGACGAGGAAAGAACAACTTCTCTATATTTAATCTAGTTATATG------TTATTGGATCGTTATGA
TTATTATTTATCATGAGTTTTGCTGAAAATGATTAATCATGTTCTTGCACTCAACATGTACTAA----------------
------------TACATTACTACATTATCTGTAGTGTCTTCATGCAAGTGACTCTATTGCCGAGATATTTTTTTTGCCCC
ATTTATTTATTTACAATATTATATTATTTACCGATTAATTTGGCTCTTGTATTGGAGAAGGAAACTCACTTGGCATTCTT
GGCTAGGATTGACAGTGTTTAGCATGGAGATCAATTAATTTATATTG----------------------------CAAGA
TTGTGCTCCATTGAACTAA--GGCACACTGGAATGCTAGACCAACAAGCGTGCTACCAAAGCCTACGAAACTTTCCATCC
CTAATTAATCTCCCGCAACCATCTGAATTTCACCGGGTGAGGCCCTTGTTCCTTTTTTCAAACAGAACTTTCCACGTTAG
CTCACCCGTACATAAAAAGATTTACGTAGTTGTAACATTGCTCATTGTAGGAGCATGGATGGTTCTTCTAAAAAAGAGAG
CATGGATGGCGTCATAAATGCAAGGGCATGTAGTGTTGATAAGATTGGCATTTTTCTTATATATGAAGTCCACGTCATTT
AGAAAAGGTAACAAAACATGTTATACACCAGGCGGCAAGTCTAGTAAGAGTCTAGTAAGCTATCAACCAAAACAGAAAAT
AAATAAAACATGTTATACAATTTATTATCTCTTAAGTGTTATATTTTAGTGTTCATAAATACTCACTCTGTTCACAAATA
TAAGTTTTTTTAGAGATTCT-AAATGAATTATATACGAAGCAAAATGGGTGAATCTACACTCTAAAATACATCCGTCTGT
ACAA
>chr3A_308
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-------------------------------------------------------------------TTAACCATGTCAC
CGGTGCAGTGGGTGCACATATCCATCTGGTGCACCGGATTTTTGTTCCGTGAGCAGAGAGGGTGTTCGCCCAAGGTGCGG
GCATGCATGTCGGTGCGAGAGCTAGCCGGACGCAAAACACGGCAAGTCGGTTGTAATAAGA-------------------
------------------GATCCTCAATTTCCAACGTCACCGCGGCAGCCGGCAACAGAAAGGCAGGCGCAGATCCA---
-----CCTCCACGGGATAATCATTACGGAGACACGCATTGCCTGCTAGTGCGAGGGGCCAGCCAGTGGGGTCGGGTCGAC
CGAACCAACATCCGGGACACGAGGAAAGAAATCCTAGCCATTCTTCACTGACACCCGGGGCCAAGGTCTCGTCCGACCTA
TAGTTGCCATCTCAACCAAGGACGCCGCGGAGGGGAGATAAATTGAACATGCCTTTTTGTTAGACAAGAGGAAGATCGAA
GTAATTAAAAG---------------------------------------------------------------------
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----------------------------------------TGGGATAGATAAGCCAGAGAAATGGTCGGAAGACAATCGT
GTCTTGCATGTCCAAAAGATTCTCGCGTGGTTGTTAGAACCAACCACCTCGCCTCACCATCGCCAGGTTTTTCGACTGCC
ATGGGGAGGAGCATAAAGCCAGCCATAAAACCCCCCAAACCCCTCGCCATTGTCACGCCCGGTCACCACCACACAGAGCA
GCAGCGGCGAGCGCTTGGTCGTGTTGGGTCGGGGGCTGTGAGAGAGAATGGACGCGCAGGCCGCCGTGACACGTGACGCC
GTCGGCCTCGACGACCCGCTCGTCGCCCTCACCCTCGGATCCATCTACGCCGCCGCCCCGACCCCGCCGCCCAAGCCGCG
GCGCCCCTCTCCTCCGACCCCTCCACCTTCCAAGCCGGCGTCCGCCACCCGCCGCCGCCTCAATGCCTCCGCCCCCGGCC
AGCGCCGCCGCGCGAGCAACGAGCCGCCTTCCGACGACGACGCCGCCGCCGCGGACGGGGCGCCGCCCCCGTTCCCGTGG
GCCACGGAGCGGCCCGCGCGGCACGACACCCTGGACAGCCTGCTGCGCCGGGGCGTCACGACCGTCGAGGGCGAGGGCCG
GTGCAAGCGCTGCAGCGGCACGGCGACCGTGGCGTACGAGCTGGCGCCCAAGTTCAGGGAGGTGCGCGAGTTCGTCGTCG
CCAACCGGCACTCGTTCGACGACCGCGCCCCGGACGCGTGGATGTACCCGGTGCTGCCCGACTGCGCGGCGTGCGGGGAG
AAGCGATGCATGTGGCCGTGGATCGCCGAGGACAAGGGCGAGATCAACTGGCTGTTCCTCCTGCTGGGCCAGATGCTGGG
CTGCTGCACGCTGGAGCAGCTCAAGTACTTCTGCAAGAACACCGGCCGCCACCGGACCGGCGCCAAGAACCGGGTCCTCT
ACTACGCCTTCCTGGAGATGTGCAGGCAGCTCGAGCCGCGCGGGCCGTTCGATGACACCGTCGCCGACGGCAACGGGTTC
CTGCACTCGTGATCTACCGGCCCCTGCGCGCAGATGGATTTTTTATGTCATGTG------------GTGTGTCGATCTGG
TAATTTCTAGGGATGACGAGGAAAGAACAACTTCTCTAGATTTAATCTAGTTATATG------TTATTGGATCGTTATGA
TTATTATTTATCATGAGTTTTGATGAAAATGATTAATCATGTTCTTGCACTCAACATGTAATA-----------------
--------------CATTACTACATTATCTGTAGCGTCTTCATGCAAGTGACTCTATTGCCGAGATATTTTTCTTGTACC
ATTTATTTATTTACAATATTATATTATTTACCGGTTAATTTGGCTCTTGTATTGGAGAAGGAAACTCACTTGGCATTCTT
GGCTAGGATTGGCAGTGTTTAGCATGGAGATCAATTAATTTATATTG----------------------------CAAGA
TTGTGCTCCATTGAACTATAGGGCACACTAGAATGCTAGACCAACAAGCGTGCCACCAGAGCCTAAGAAACTTTCCATCC
CTAATCAATCTCCCCCAACCCCCTGAATTTCAGCGGGTGAGGCCCCTGTTCTTC--TTCAAACAGAACTTTCCACGTTAG
CTCACCCGTACACAAAAATATTTAGGTAGATGTAACATTGCTCATTGTAGGAGCATGGATAGTTCTTCTAAAAAAAT-AG
CATGGATGGCGGG-----------------------------GATTGACATTTTTCTTATGTATGAAGTCCACGTCATCT
AGAAAAGATAATTAAACATGTTATACACCAGACGGCAAGTCAAC-----------TAAGCTATCAAACAAAACAGAAAAT
AAATAAAACATGCTATACAATTTATTATTTCTTAAGTGTTATATTTTAGTGTTCATAAATACTCACTTTGTTCCTAAATA
GAAGTATTTTTAGATATTCTAATAGAGATTATAGACGGAGCAAAATAAGTGAATCTACACTTTAAAATACATCCGTCCGT
ACAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S------------------
------------------------S------S-S----S--S------S----S---------------------S---S
------------------------------------------------S----------S--------------------
-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
----S---------------------------------------------------------------------------
----------------------------------------------------------------S---------SSSSSS
SSS----------S------------------------------------------------------------------
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-----------------------------S---------S-----------------------------S----------
-------------SSS----------------------------------------------------------------
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-S------------------------------------------------------------------------------
---------------S-----S----------------------------------------------------------
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-----------------------------------------------------------------------------S--
-----------S----S-----------S---------------------------------------------------
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-----------------------SS-------------------------------------------------------
-----------S--------------------------------------------------------------------
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---------------------------------------------------------S----------------------
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-------------------------------------------SSSSSSSSSS----------S----------------
--------------------------------------------------SS--SSSSSSSSS-----------------
---------------------------------------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-------------------S------------------------------------------------
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-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-----------S--------------------------------------------------------------------
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-S---------------------------S--------------------------------------------------
--------------------S--------S--------------------------------------------------
------------------------------------------S-------------------------------------
-----------S-----S--------------------------------------------------------------
---SSS----------------------S-------------------S--------------------S---S------
----
>forward_325
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-----------------------------------------------------------------TGTTAGCCATGTCAC
CGGTC---------------------------------------------------------------------------
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>reverse_2053
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----------------------------------------------------AGTGTCGTCTTGTGTGTCGA--------
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