Multiple sequence alignment - TraesCS3D01G256500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G256500 chr3D 100.000 3290 0 0 1 3290 358505512 358502223 0.000000e+00 6076
1 TraesCS3D01G256500 chr3D 80.709 959 157 23 1035 1979 358176893 358177837 0.000000e+00 721
2 TraesCS3D01G256500 chr3D 78.482 962 177 22 1035 1978 358188074 358189023 1.310000e-168 603
3 TraesCS3D01G256500 chr3D 94.025 318 14 4 1 314 593714100 593714416 8.260000e-131 477
4 TraesCS3D01G256500 chr3A 90.681 2586 133 45 473 3007 478170037 478167509 0.000000e+00 3341
5 TraesCS3D01G256500 chr3A 80.042 957 170 15 1035 1979 477427551 477428498 0.000000e+00 689
6 TraesCS3D01G256500 chr3A 78.429 955 184 19 1035 1978 477430563 477431506 1.310000e-168 603
7 TraesCS3D01G256500 chr3A 93.528 309 15 3 1 308 441848395 441848699 3.870000e-124 455
8 TraesCS3D01G256500 chr3A 87.273 165 13 3 3133 3289 478167436 478167272 7.250000e-42 182
9 TraesCS3D01G256500 chr3B 93.047 1280 57 13 473 1740 464505737 464504478 0.000000e+00 1842
10 TraesCS3D01G256500 chr3B 92.308 169 12 1 310 477 341964523 341964691 4.240000e-59 239
11 TraesCS3D01G256500 chr3B 97.015 67 2 0 2725 2791 464502019 464502085 2.680000e-21 113
12 TraesCS3D01G256500 chr1A 80.040 1002 158 35 1007 1980 545649166 545648179 0.000000e+00 704
13 TraesCS3D01G256500 chr1A 93.413 167 11 0 311 477 344464913 344464747 7.050000e-62 248
14 TraesCS3D01G256500 chr1B 80.040 992 158 32 1010 1977 617968639 617967664 0.000000e+00 699
15 TraesCS3D01G256500 chr1D 79.899 990 155 34 1017 1977 450462957 450461983 0.000000e+00 686
16 TraesCS3D01G256500 chr1D 93.528 309 16 3 1 308 556497 556802 1.080000e-124 457
17 TraesCS3D01G256500 chr1D 91.813 171 14 0 307 477 68439158 68439328 4.240000e-59 239
18 TraesCS3D01G256500 chr1D 90.449 178 16 1 311 487 458805543 458805366 1.970000e-57 233
19 TraesCS3D01G256500 chr2D 94.268 314 9 7 1 308 380136529 380136839 3.840000e-129 472
20 TraesCS3D01G256500 chr2D 94.545 165 9 0 313 477 366924776 366924612 4.210000e-64 255
21 TraesCS3D01G256500 chr2D 92.727 165 12 0 313 477 486334741 486334905 4.240000e-59 239
22 TraesCS3D01G256500 chr2D 91.279 172 15 0 306 477 445189819 445189990 5.490000e-58 235
23 TraesCS3D01G256500 chr7D 93.671 316 13 4 1 315 75159396 75159087 1.790000e-127 466
24 TraesCS3D01G256500 chr6A 93.354 316 13 5 1 308 107062047 107062362 8.320000e-126 460
25 TraesCS3D01G256500 chr7A 93.312 314 13 7 1 308 501037504 501037815 1.080000e-124 457
26 TraesCS3D01G256500 chr7A 91.813 171 14 0 307 477 651790292 651790462 4.240000e-59 239
27 TraesCS3D01G256500 chr4B 93.248 311 17 4 1 308 592709784 592710093 3.870000e-124 455
28 TraesCS3D01G256500 chr5D 92.722 316 16 4 1 314 221003683 221003993 1.800000e-122 449
29 TraesCS3D01G256500 chr5D 90.395 177 16 1 311 486 42949558 42949734 7.100000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G256500 chr3D 358502223 358505512 3289 True 6076.0 6076 100.0000 1 3290 1 chr3D.!!$R1 3289
1 TraesCS3D01G256500 chr3D 358176893 358177837 944 False 721.0 721 80.7090 1035 1979 1 chr3D.!!$F1 944
2 TraesCS3D01G256500 chr3D 358188074 358189023 949 False 603.0 603 78.4820 1035 1978 1 chr3D.!!$F2 943
3 TraesCS3D01G256500 chr3A 478167272 478170037 2765 True 1761.5 3341 88.9770 473 3289 2 chr3A.!!$R1 2816
4 TraesCS3D01G256500 chr3A 477427551 477431506 3955 False 646.0 689 79.2355 1035 1979 2 chr3A.!!$F2 944
5 TraesCS3D01G256500 chr3B 464504478 464505737 1259 True 1842.0 1842 93.0470 473 1740 1 chr3B.!!$R1 1267
6 TraesCS3D01G256500 chr1A 545648179 545649166 987 True 704.0 704 80.0400 1007 1980 1 chr1A.!!$R2 973
7 TraesCS3D01G256500 chr1B 617967664 617968639 975 True 699.0 699 80.0400 1010 1977 1 chr1B.!!$R1 967
8 TraesCS3D01G256500 chr1D 450461983 450462957 974 True 686.0 686 79.8990 1017 1977 1 chr1D.!!$R1 960

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.025001 GTTATGCACTAGCGCGTGTG 59.975 55.0 24.38 24.38 46.23 3.82 F
177 178 0.034059 GGAGAGGGTGTGTGTGTGAG 59.966 60.0 0.00 0.00 0.00 3.51 F
306 307 0.038526 ACACACGGGCGTTCTTCTAG 60.039 55.0 0.00 0.00 0.00 2.43 F
1881 4959 0.101040 ACACCGAAGACAACGACGAA 59.899 50.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 5034 0.173481 CGATCCAGCCTTCGTCTGAA 59.827 55.0 0.00 0.00 33.54 3.02 R
2151 5238 0.250295 CACTGAAGAGGCCCGAACAA 60.250 55.0 0.00 0.00 0.00 2.83 R
2272 5362 0.109781 AATTAAGCGCGCACACAAGG 60.110 50.0 35.10 0.00 0.00 3.61 R
3030 6129 0.029035 AGCCGAGATAAGTGCGTACG 59.971 55.0 11.84 11.84 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.019656 GGTGGCAAATATAATACACATAATCCA 57.980 33.333 0.00 0.00 0.00 3.41
40 41 8.696043 ACACATAATCCATATTGTTATGCACT 57.304 30.769 0.00 0.00 38.67 4.40
41 42 9.791801 ACACATAATCCATATTGTTATGCACTA 57.208 29.630 0.00 0.00 38.67 2.74
43 44 8.950210 ACATAATCCATATTGTTATGCACTAGC 58.050 33.333 0.00 0.00 38.67 3.42
44 45 6.486253 AATCCATATTGTTATGCACTAGCG 57.514 37.500 0.00 0.00 46.23 4.26
45 46 3.745975 TCCATATTGTTATGCACTAGCGC 59.254 43.478 0.00 0.00 46.23 5.92
46 47 3.423515 CCATATTGTTATGCACTAGCGCG 60.424 47.826 0.00 0.00 46.23 6.86
47 48 1.651987 ATTGTTATGCACTAGCGCGT 58.348 45.000 8.43 2.53 46.23 6.01
48 49 0.718904 TTGTTATGCACTAGCGCGTG 59.281 50.000 8.43 10.64 46.23 5.34
49 50 0.389296 TGTTATGCACTAGCGCGTGT 60.389 50.000 15.40 9.55 46.23 4.49
50 51 0.025001 GTTATGCACTAGCGCGTGTG 59.975 55.000 24.38 24.38 46.23 3.82
62 63 3.274196 GCGTGTGCGTGTGAAATAG 57.726 52.632 0.00 0.00 40.81 1.73
63 64 0.787787 GCGTGTGCGTGTGAAATAGA 59.212 50.000 0.00 0.00 40.81 1.98
64 65 1.393539 GCGTGTGCGTGTGAAATAGAT 59.606 47.619 0.00 0.00 40.81 1.98
65 66 2.784327 GCGTGTGCGTGTGAAATAGATG 60.784 50.000 0.00 0.00 40.81 2.90
66 67 2.222796 CGTGTGCGTGTGAAATAGATGG 60.223 50.000 0.00 0.00 0.00 3.51
67 68 3.000041 GTGTGCGTGTGAAATAGATGGA 59.000 45.455 0.00 0.00 0.00 3.41
68 69 3.623060 GTGTGCGTGTGAAATAGATGGAT 59.377 43.478 0.00 0.00 0.00 3.41
69 70 4.094887 GTGTGCGTGTGAAATAGATGGATT 59.905 41.667 0.00 0.00 0.00 3.01
70 71 5.293324 GTGTGCGTGTGAAATAGATGGATTA 59.707 40.000 0.00 0.00 0.00 1.75
71 72 6.017934 GTGTGCGTGTGAAATAGATGGATTAT 60.018 38.462 0.00 0.00 0.00 1.28
72 73 6.018016 TGTGCGTGTGAAATAGATGGATTATG 60.018 38.462 0.00 0.00 0.00 1.90
73 74 6.202762 GTGCGTGTGAAATAGATGGATTATGA 59.797 38.462 0.00 0.00 0.00 2.15
74 75 6.936335 TGCGTGTGAAATAGATGGATTATGAT 59.064 34.615 0.00 0.00 0.00 2.45
75 76 7.118245 TGCGTGTGAAATAGATGGATTATGATC 59.882 37.037 0.00 0.00 0.00 2.92
76 77 7.332926 GCGTGTGAAATAGATGGATTATGATCT 59.667 37.037 0.00 0.00 33.43 2.75
77 78 8.867935 CGTGTGAAATAGATGGATTATGATCTC 58.132 37.037 0.00 0.00 31.29 2.75
78 79 8.867935 GTGTGAAATAGATGGATTATGATCTCG 58.132 37.037 0.00 0.00 31.29 4.04
79 80 8.588472 TGTGAAATAGATGGATTATGATCTCGT 58.412 33.333 0.00 0.00 31.29 4.18
82 83 9.522804 GAAATAGATGGATTATGATCTCGTACC 57.477 37.037 0.00 0.00 31.29 3.34
83 84 5.923733 AGATGGATTATGATCTCGTACCC 57.076 43.478 0.00 0.00 32.66 3.69
84 85 5.333581 AGATGGATTATGATCTCGTACCCA 58.666 41.667 0.00 0.00 32.66 4.51
85 86 5.780282 AGATGGATTATGATCTCGTACCCAA 59.220 40.000 0.00 0.00 32.66 4.12
86 87 6.441924 AGATGGATTATGATCTCGTACCCAAT 59.558 38.462 0.00 0.00 32.66 3.16
87 88 7.619698 AGATGGATTATGATCTCGTACCCAATA 59.380 37.037 0.00 0.00 32.66 1.90
88 89 7.547697 TGGATTATGATCTCGTACCCAATAA 57.452 36.000 0.00 0.00 32.66 1.40
89 90 7.611770 TGGATTATGATCTCGTACCCAATAAG 58.388 38.462 0.00 0.00 32.66 1.73
90 91 7.453439 TGGATTATGATCTCGTACCCAATAAGA 59.547 37.037 0.00 0.00 32.66 2.10
91 92 8.478877 GGATTATGATCTCGTACCCAATAAGAT 58.521 37.037 0.00 0.00 32.66 2.40
94 95 9.749340 TTATGATCTCGTACCCAATAAGATAGA 57.251 33.333 0.00 0.00 0.00 1.98
95 96 8.830915 ATGATCTCGTACCCAATAAGATAGAT 57.169 34.615 0.00 0.00 0.00 1.98
96 97 9.922477 ATGATCTCGTACCCAATAAGATAGATA 57.078 33.333 0.00 0.00 0.00 1.98
97 98 9.922477 TGATCTCGTACCCAATAAGATAGATAT 57.078 33.333 0.00 0.00 0.00 1.63
99 100 9.702253 ATCTCGTACCCAATAAGATAGATATGT 57.298 33.333 0.00 0.00 0.00 2.29
100 101 8.957466 TCTCGTACCCAATAAGATAGATATGTG 58.043 37.037 0.00 0.00 0.00 3.21
101 102 8.645814 TCGTACCCAATAAGATAGATATGTGT 57.354 34.615 0.00 0.00 0.00 3.72
102 103 8.520351 TCGTACCCAATAAGATAGATATGTGTG 58.480 37.037 0.00 0.00 0.00 3.82
103 104 8.304596 CGTACCCAATAAGATAGATATGTGTGT 58.695 37.037 0.00 0.00 0.00 3.72
104 105 9.424319 GTACCCAATAAGATAGATATGTGTGTG 57.576 37.037 0.00 0.00 0.00 3.82
105 106 8.034313 ACCCAATAAGATAGATATGTGTGTGT 57.966 34.615 0.00 0.00 0.00 3.72
106 107 7.933577 ACCCAATAAGATAGATATGTGTGTGTG 59.066 37.037 0.00 0.00 0.00 3.82
107 108 7.933577 CCCAATAAGATAGATATGTGTGTGTGT 59.066 37.037 0.00 0.00 0.00 3.72
108 109 8.768019 CCAATAAGATAGATATGTGTGTGTGTG 58.232 37.037 0.00 0.00 0.00 3.82
109 110 9.317936 CAATAAGATAGATATGTGTGTGTGTGT 57.682 33.333 0.00 0.00 0.00 3.72
110 111 9.890629 AATAAGATAGATATGTGTGTGTGTGTT 57.109 29.630 0.00 0.00 0.00 3.32
112 113 8.932945 AAGATAGATATGTGTGTGTGTGTTAG 57.067 34.615 0.00 0.00 0.00 2.34
113 114 8.293699 AGATAGATATGTGTGTGTGTGTTAGA 57.706 34.615 0.00 0.00 0.00 2.10
114 115 8.409371 AGATAGATATGTGTGTGTGTGTTAGAG 58.591 37.037 0.00 0.00 0.00 2.43
115 116 6.590234 AGATATGTGTGTGTGTGTTAGAGA 57.410 37.500 0.00 0.00 0.00 3.10
116 117 6.625362 AGATATGTGTGTGTGTGTTAGAGAG 58.375 40.000 0.00 0.00 0.00 3.20
117 118 4.937201 ATGTGTGTGTGTGTTAGAGAGA 57.063 40.909 0.00 0.00 0.00 3.10
118 119 4.307443 TGTGTGTGTGTGTTAGAGAGAG 57.693 45.455 0.00 0.00 0.00 3.20
119 120 3.951680 TGTGTGTGTGTGTTAGAGAGAGA 59.048 43.478 0.00 0.00 0.00 3.10
120 121 4.036852 TGTGTGTGTGTGTTAGAGAGAGAG 59.963 45.833 0.00 0.00 0.00 3.20
121 122 4.276183 GTGTGTGTGTGTTAGAGAGAGAGA 59.724 45.833 0.00 0.00 0.00 3.10
122 123 4.517075 TGTGTGTGTGTTAGAGAGAGAGAG 59.483 45.833 0.00 0.00 0.00 3.20
123 124 4.075682 TGTGTGTGTTAGAGAGAGAGAGG 58.924 47.826 0.00 0.00 0.00 3.69
124 125 3.442273 GTGTGTGTTAGAGAGAGAGAGGG 59.558 52.174 0.00 0.00 0.00 4.30
125 126 3.020984 GTGTGTTAGAGAGAGAGAGGGG 58.979 54.545 0.00 0.00 0.00 4.79
126 127 2.024846 TGTGTTAGAGAGAGAGAGGGGG 60.025 54.545 0.00 0.00 0.00 5.40
140 141 3.036959 GGGGGAGAGGGGGAGAGA 61.037 72.222 0.00 0.00 0.00 3.10
141 142 2.612251 GGGGAGAGGGGGAGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
142 143 2.015726 GGGGAGAGGGGGAGAGAGA 61.016 68.421 0.00 0.00 0.00 3.10
143 144 1.541672 GGGAGAGGGGGAGAGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
144 145 1.293683 GGGAGAGGGGGAGAGAGAGT 61.294 65.000 0.00 0.00 0.00 3.24
145 146 0.106217 GGAGAGGGGGAGAGAGAGTG 60.106 65.000 0.00 0.00 0.00 3.51
146 147 0.923358 GAGAGGGGGAGAGAGAGTGA 59.077 60.000 0.00 0.00 0.00 3.41
147 148 0.926293 AGAGGGGGAGAGAGAGTGAG 59.074 60.000 0.00 0.00 0.00 3.51
148 149 0.106217 GAGGGGGAGAGAGAGTGAGG 60.106 65.000 0.00 0.00 0.00 3.86
149 150 0.553862 AGGGGGAGAGAGAGTGAGGA 60.554 60.000 0.00 0.00 0.00 3.71
150 151 0.106217 GGGGGAGAGAGAGTGAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
151 152 0.106217 GGGGAGAGAGAGTGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
152 153 0.923358 GGGAGAGAGAGTGAGGAGGA 59.077 60.000 0.00 0.00 0.00 3.71
153 154 1.133792 GGGAGAGAGAGTGAGGAGGAG 60.134 61.905 0.00 0.00 0.00 3.69
154 155 1.133792 GGAGAGAGAGTGAGGAGGAGG 60.134 61.905 0.00 0.00 0.00 4.30
155 156 0.926293 AGAGAGAGTGAGGAGGAGGG 59.074 60.000 0.00 0.00 0.00 4.30
156 157 0.923358 GAGAGAGTGAGGAGGAGGGA 59.077 60.000 0.00 0.00 0.00 4.20
157 158 0.926293 AGAGAGTGAGGAGGAGGGAG 59.074 60.000 0.00 0.00 0.00 4.30
158 159 0.106217 GAGAGTGAGGAGGAGGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
159 160 1.075600 GAGTGAGGAGGAGGGAGGG 60.076 68.421 0.00 0.00 0.00 4.30
160 161 1.547755 AGTGAGGAGGAGGGAGGGA 60.548 63.158 0.00 0.00 0.00 4.20
161 162 1.075600 GTGAGGAGGAGGGAGGGAG 60.076 68.421 0.00 0.00 0.00 4.30
162 163 1.230650 TGAGGAGGAGGGAGGGAGA 60.231 63.158 0.00 0.00 0.00 3.71
163 164 1.292941 TGAGGAGGAGGGAGGGAGAG 61.293 65.000 0.00 0.00 0.00 3.20
164 165 2.018086 AGGAGGAGGGAGGGAGAGG 61.018 68.421 0.00 0.00 0.00 3.69
165 166 2.612251 GAGGAGGGAGGGAGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
166 167 2.204705 AGGAGGGAGGGAGAGGGT 60.205 66.667 0.00 0.00 0.00 4.34
167 168 2.041405 GGAGGGAGGGAGAGGGTG 60.041 72.222 0.00 0.00 0.00 4.61
168 169 2.781406 GAGGGAGGGAGAGGGTGT 59.219 66.667 0.00 0.00 0.00 4.16
169 170 1.687493 GAGGGAGGGAGAGGGTGTG 60.687 68.421 0.00 0.00 0.00 3.82
170 171 2.122954 GGGAGGGAGAGGGTGTGT 59.877 66.667 0.00 0.00 0.00 3.72
171 172 2.294078 GGGAGGGAGAGGGTGTGTG 61.294 68.421 0.00 0.00 0.00 3.82
172 173 1.536662 GGAGGGAGAGGGTGTGTGT 60.537 63.158 0.00 0.00 0.00 3.72
173 174 1.674057 GAGGGAGAGGGTGTGTGTG 59.326 63.158 0.00 0.00 0.00 3.82
174 175 1.074471 AGGGAGAGGGTGTGTGTGT 60.074 57.895 0.00 0.00 0.00 3.72
175 176 1.071471 GGGAGAGGGTGTGTGTGTG 59.929 63.158 0.00 0.00 0.00 3.82
176 177 1.407656 GGGAGAGGGTGTGTGTGTGA 61.408 60.000 0.00 0.00 0.00 3.58
177 178 0.034059 GGAGAGGGTGTGTGTGTGAG 59.966 60.000 0.00 0.00 0.00 3.51
178 179 1.040646 GAGAGGGTGTGTGTGTGAGA 58.959 55.000 0.00 0.00 0.00 3.27
179 180 1.412710 GAGAGGGTGTGTGTGTGAGAA 59.587 52.381 0.00 0.00 0.00 2.87
180 181 2.037772 GAGAGGGTGTGTGTGTGAGAAT 59.962 50.000 0.00 0.00 0.00 2.40
181 182 2.439507 AGAGGGTGTGTGTGTGAGAATT 59.560 45.455 0.00 0.00 0.00 2.17
182 183 3.117888 AGAGGGTGTGTGTGTGAGAATTT 60.118 43.478 0.00 0.00 0.00 1.82
183 184 2.951642 AGGGTGTGTGTGTGAGAATTTG 59.048 45.455 0.00 0.00 0.00 2.32
184 185 2.948979 GGGTGTGTGTGTGAGAATTTGA 59.051 45.455 0.00 0.00 0.00 2.69
185 186 3.569701 GGGTGTGTGTGTGAGAATTTGAT 59.430 43.478 0.00 0.00 0.00 2.57
186 187 4.539870 GGTGTGTGTGTGAGAATTTGATG 58.460 43.478 0.00 0.00 0.00 3.07
187 188 4.539870 GTGTGTGTGTGAGAATTTGATGG 58.460 43.478 0.00 0.00 0.00 3.51
188 189 4.036734 GTGTGTGTGTGAGAATTTGATGGT 59.963 41.667 0.00 0.00 0.00 3.55
189 190 5.238432 GTGTGTGTGTGAGAATTTGATGGTA 59.762 40.000 0.00 0.00 0.00 3.25
190 191 5.825151 TGTGTGTGTGAGAATTTGATGGTAA 59.175 36.000 0.00 0.00 0.00 2.85
191 192 6.319911 TGTGTGTGTGAGAATTTGATGGTAAA 59.680 34.615 0.00 0.00 0.00 2.01
192 193 7.148000 TGTGTGTGTGAGAATTTGATGGTAAAA 60.148 33.333 0.00 0.00 0.00 1.52
193 194 7.704472 GTGTGTGTGAGAATTTGATGGTAAAAA 59.296 33.333 0.00 0.00 0.00 1.94
210 211 2.981859 AAAAGGTCGTCACTGTCACT 57.018 45.000 0.00 0.00 0.00 3.41
211 212 2.981859 AAAGGTCGTCACTGTCACTT 57.018 45.000 0.00 0.00 0.00 3.16
212 213 4.395959 AAAAGGTCGTCACTGTCACTTA 57.604 40.909 0.00 0.00 0.00 2.24
213 214 4.395959 AAAGGTCGTCACTGTCACTTAA 57.604 40.909 0.00 0.00 0.00 1.85
214 215 4.602340 AAGGTCGTCACTGTCACTTAAT 57.398 40.909 0.00 0.00 0.00 1.40
215 216 5.717078 AAGGTCGTCACTGTCACTTAATA 57.283 39.130 0.00 0.00 0.00 0.98
216 217 5.916661 AGGTCGTCACTGTCACTTAATAT 57.083 39.130 0.00 0.00 0.00 1.28
217 218 5.651530 AGGTCGTCACTGTCACTTAATATG 58.348 41.667 0.00 0.00 0.00 1.78
218 219 5.185249 AGGTCGTCACTGTCACTTAATATGT 59.815 40.000 0.00 0.00 0.00 2.29
219 220 6.376299 AGGTCGTCACTGTCACTTAATATGTA 59.624 38.462 0.00 0.00 0.00 2.29
220 221 7.068348 AGGTCGTCACTGTCACTTAATATGTAT 59.932 37.037 0.00 0.00 0.00 2.29
221 222 7.167635 GGTCGTCACTGTCACTTAATATGTATG 59.832 40.741 0.00 0.00 0.00 2.39
222 223 7.913821 GTCGTCACTGTCACTTAATATGTATGA 59.086 37.037 0.00 0.00 0.00 2.15
223 224 8.129211 TCGTCACTGTCACTTAATATGTATGAG 58.871 37.037 0.00 0.00 0.00 2.90
224 225 8.129211 CGTCACTGTCACTTAATATGTATGAGA 58.871 37.037 0.00 0.00 0.00 3.27
225 226 9.803315 GTCACTGTCACTTAATATGTATGAGAA 57.197 33.333 0.00 0.00 0.00 2.87
281 282 5.128992 ACTTTTAAAGTTAATGTGGCCCG 57.871 39.130 4.30 0.00 39.04 6.13
282 283 4.585581 ACTTTTAAAGTTAATGTGGCCCGT 59.414 37.500 4.30 0.00 39.04 5.28
283 284 5.069383 ACTTTTAAAGTTAATGTGGCCCGTT 59.931 36.000 4.30 1.76 39.04 4.44
284 285 4.506886 TTAAAGTTAATGTGGCCCGTTG 57.493 40.909 0.00 0.00 0.00 4.10
285 286 0.601057 AAGTTAATGTGGCCCGTTGC 59.399 50.000 0.00 0.00 40.16 4.17
286 287 0.538516 AGTTAATGTGGCCCGTTGCA 60.539 50.000 0.00 0.00 43.89 4.08
287 288 0.315568 GTTAATGTGGCCCGTTGCAA 59.684 50.000 0.00 0.00 43.89 4.08
288 289 0.315568 TTAATGTGGCCCGTTGCAAC 59.684 50.000 19.89 19.89 44.85 4.17
291 292 3.522731 GTGGCCCGTTGCAACACA 61.523 61.111 28.01 17.55 43.96 3.72
292 293 3.522731 TGGCCCGTTGCAACACAC 61.523 61.111 28.01 15.85 43.89 3.82
293 294 4.622456 GGCCCGTTGCAACACACG 62.622 66.667 28.01 15.55 43.89 4.49
294 295 4.622456 GCCCGTTGCAACACACGG 62.622 66.667 28.01 23.21 40.47 4.94
296 297 4.622456 CCGTTGCAACACACGGGC 62.622 66.667 28.01 0.00 38.50 6.13
297 298 4.954680 CGTTGCAACACACGGGCG 62.955 66.667 28.01 8.82 0.00 6.13
298 299 3.883180 GTTGCAACACACGGGCGT 61.883 61.111 24.52 0.00 0.00 5.68
299 300 3.134792 TTGCAACACACGGGCGTT 61.135 55.556 0.00 0.00 0.00 4.84
300 301 3.114647 TTGCAACACACGGGCGTTC 62.115 57.895 0.00 0.00 0.00 3.95
301 302 3.276846 GCAACACACGGGCGTTCT 61.277 61.111 0.00 0.00 0.00 3.01
302 303 2.830285 GCAACACACGGGCGTTCTT 61.830 57.895 0.00 0.00 0.00 2.52
303 304 1.278637 CAACACACGGGCGTTCTTC 59.721 57.895 0.00 0.00 0.00 2.87
304 305 1.145377 AACACACGGGCGTTCTTCT 59.855 52.632 0.00 0.00 0.00 2.85
305 306 0.390124 AACACACGGGCGTTCTTCTA 59.610 50.000 0.00 0.00 0.00 2.10
306 307 0.038526 ACACACGGGCGTTCTTCTAG 60.039 55.000 0.00 0.00 0.00 2.43
307 308 0.038526 CACACGGGCGTTCTTCTAGT 60.039 55.000 0.00 0.00 0.00 2.57
308 309 0.243095 ACACGGGCGTTCTTCTAGTC 59.757 55.000 0.00 0.00 0.00 2.59
309 310 0.526662 CACGGGCGTTCTTCTAGTCT 59.473 55.000 0.00 0.00 0.00 3.24
310 311 1.067776 CACGGGCGTTCTTCTAGTCTT 60.068 52.381 0.00 0.00 0.00 3.01
311 312 2.163010 CACGGGCGTTCTTCTAGTCTTA 59.837 50.000 0.00 0.00 0.00 2.10
312 313 3.022406 ACGGGCGTTCTTCTAGTCTTAT 58.978 45.455 0.00 0.00 0.00 1.73
313 314 4.036027 CACGGGCGTTCTTCTAGTCTTATA 59.964 45.833 0.00 0.00 0.00 0.98
314 315 4.036144 ACGGGCGTTCTTCTAGTCTTATAC 59.964 45.833 0.00 0.00 0.00 1.47
315 316 4.275443 CGGGCGTTCTTCTAGTCTTATACT 59.725 45.833 0.00 0.00 42.62 2.12
316 317 5.560567 CGGGCGTTCTTCTAGTCTTATACTC 60.561 48.000 0.00 0.00 39.80 2.59
317 318 5.278414 GGGCGTTCTTCTAGTCTTATACTCC 60.278 48.000 0.00 0.00 39.80 3.85
318 319 5.532032 GGCGTTCTTCTAGTCTTATACTCCT 59.468 44.000 0.00 0.00 39.80 3.69
319 320 6.039605 GGCGTTCTTCTAGTCTTATACTCCTT 59.960 42.308 0.00 0.00 39.80 3.36
320 321 7.134163 GCGTTCTTCTAGTCTTATACTCCTTC 58.866 42.308 0.00 0.00 39.80 3.46
321 322 7.641760 CGTTCTTCTAGTCTTATACTCCTTCC 58.358 42.308 0.00 0.00 39.80 3.46
322 323 7.518689 CGTTCTTCTAGTCTTATACTCCTTCCG 60.519 44.444 0.00 0.00 39.80 4.30
323 324 6.897986 TCTTCTAGTCTTATACTCCTTCCGT 58.102 40.000 0.00 0.00 39.80 4.69
324 325 7.344913 TCTTCTAGTCTTATACTCCTTCCGTT 58.655 38.462 0.00 0.00 39.80 4.44
325 326 7.833183 TCTTCTAGTCTTATACTCCTTCCGTTT 59.167 37.037 0.00 0.00 39.80 3.60
326 327 7.951347 TCTAGTCTTATACTCCTTCCGTTTT 57.049 36.000 0.00 0.00 39.80 2.43
327 328 8.358582 TCTAGTCTTATACTCCTTCCGTTTTT 57.641 34.615 0.00 0.00 39.80 1.94
328 329 9.466497 TCTAGTCTTATACTCCTTCCGTTTTTA 57.534 33.333 0.00 0.00 39.80 1.52
331 332 9.955102 AGTCTTATACTCCTTCCGTTTTTAAAT 57.045 29.630 0.00 0.00 30.33 1.40
339 340 9.955102 ACTCCTTCCGTTTTTAAATATAAGTCT 57.045 29.630 0.00 0.00 0.00 3.24
371 372 9.485591 GTCATTTTAAATGGACTACAACATACG 57.514 33.333 16.42 0.00 0.00 3.06
372 373 8.670135 TCATTTTAAATGGACTACAACATACGG 58.330 33.333 16.42 0.00 0.00 4.02
373 374 8.670135 CATTTTAAATGGACTACAACATACGGA 58.330 33.333 9.63 0.00 0.00 4.69
374 375 8.795842 TTTTAAATGGACTACAACATACGGAT 57.204 30.769 0.00 0.00 0.00 4.18
375 376 7.780008 TTAAATGGACTACAACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
377 378 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
378 379 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
417 418 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
418 419 8.703743 AGAGTATAGATTCACTCATTTTGCTCT 58.296 33.333 4.70 0.00 42.99 4.09
419 420 8.659925 AGTATAGATTCACTCATTTTGCTCTG 57.340 34.615 0.00 0.00 0.00 3.35
420 421 8.263640 AGTATAGATTCACTCATTTTGCTCTGT 58.736 33.333 0.00 0.00 0.00 3.41
421 422 9.534565 GTATAGATTCACTCATTTTGCTCTGTA 57.465 33.333 0.00 0.00 0.00 2.74
423 424 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
424 425 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
425 426 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
426 427 7.977789 TTCACTCATTTTGCTCTGTATGTAA 57.022 32.000 0.00 0.00 0.00 2.41
427 428 8.565896 TTCACTCATTTTGCTCTGTATGTAAT 57.434 30.769 0.00 0.00 0.00 1.89
428 429 8.201554 TCACTCATTTTGCTCTGTATGTAATC 57.798 34.615 0.00 0.00 0.00 1.75
429 430 7.823799 TCACTCATTTTGCTCTGTATGTAATCA 59.176 33.333 0.00 0.00 0.00 2.57
430 431 8.618677 CACTCATTTTGCTCTGTATGTAATCAT 58.381 33.333 0.00 0.00 38.00 2.45
431 432 9.182214 ACTCATTTTGCTCTGTATGTAATCATT 57.818 29.630 0.00 0.00 35.70 2.57
433 434 9.791820 TCATTTTGCTCTGTATGTAATCATTTG 57.208 29.630 0.00 0.00 35.70 2.32
434 435 9.577110 CATTTTGCTCTGTATGTAATCATTTGT 57.423 29.630 0.00 0.00 35.70 2.83
467 468 9.983804 GTTTAGAAAGACTTATATTTGGGAACG 57.016 33.333 0.00 0.00 0.00 3.95
468 469 8.726870 TTAGAAAGACTTATATTTGGGAACGG 57.273 34.615 0.00 0.00 0.00 4.44
469 470 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
470 471 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
471 472 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
472 473 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
473 474 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
474 475 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
475 476 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
476 477 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
477 478 1.272807 TTTGGGAACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
488 489 5.134661 ACGGAGGGAGTAGAAGAATTAGAG 58.865 45.833 0.00 0.00 0.00 2.43
492 493 6.489022 GGAGGGAGTAGAAGAATTAGAGAGAC 59.511 46.154 0.00 0.00 0.00 3.36
519 520 2.796031 GAGAAGCAATGAGAGCATCGAG 59.204 50.000 0.00 0.00 42.67 4.04
580 588 2.407210 GCGCGAGAGAGACAGGAG 59.593 66.667 12.10 0.00 0.00 3.69
634 642 1.298157 CGCCGTTTTCCATCTGCTCA 61.298 55.000 0.00 0.00 0.00 4.26
635 643 0.169009 GCCGTTTTCCATCTGCTCAC 59.831 55.000 0.00 0.00 0.00 3.51
657 665 1.001393 GCTCCCGGAACCCAATTCA 60.001 57.895 0.73 0.00 39.30 2.57
812 830 0.249322 CGCGGAATTGGTACGGATCT 60.249 55.000 0.00 0.00 0.00 2.75
813 831 1.805120 CGCGGAATTGGTACGGATCTT 60.805 52.381 0.00 0.00 0.00 2.40
821 839 6.145696 GGAATTGGTACGGATCTTAATCGAAG 59.854 42.308 0.00 0.00 36.38 3.79
822 840 3.973657 TGGTACGGATCTTAATCGAAGC 58.026 45.455 0.00 0.00 34.87 3.86
823 841 3.243636 TGGTACGGATCTTAATCGAAGCC 60.244 47.826 0.00 0.00 34.87 4.35
824 842 3.243636 GGTACGGATCTTAATCGAAGCCA 60.244 47.826 0.00 0.00 34.87 4.75
825 843 2.822764 ACGGATCTTAATCGAAGCCAC 58.177 47.619 0.00 0.00 34.87 5.01
906 933 4.154737 TCTCCACTTCAAATCAAATCGCAG 59.845 41.667 0.00 0.00 0.00 5.18
933 963 1.741401 CCAATCGAGCGAGCCAACA 60.741 57.895 0.00 0.00 0.00 3.33
951 981 1.228245 AACTCGCAGCCACCACAAT 60.228 52.632 0.00 0.00 0.00 2.71
959 989 2.610232 GCAGCCACCACAATTTCGAAAT 60.610 45.455 17.60 17.60 0.00 2.17
982 1019 1.904865 CCTGCCTGCCTGCAAGAAA 60.905 57.895 0.00 0.00 41.51 2.52
1615 1666 2.272447 TGGAGCGACATGGACGACA 61.272 57.895 16.39 9.65 0.00 4.35
1873 4951 1.521450 GGAGTCCGACACCGAAGACA 61.521 60.000 0.40 0.00 38.22 3.41
1881 4959 0.101040 ACACCGAAGACAACGACGAA 59.899 50.000 0.00 0.00 0.00 3.85
1887 4965 1.798813 GAAGACAACGACGAAGGCATT 59.201 47.619 0.00 0.00 0.00 3.56
1899 4980 2.832201 GGCATTGCAGAGAGCCCC 60.832 66.667 11.39 0.00 44.83 5.80
1952 5033 2.190578 GGCATTCCCGGACTGGAG 59.809 66.667 0.73 0.00 42.00 3.86
1953 5034 2.670148 GGCATTCCCGGACTGGAGT 61.670 63.158 0.73 0.00 42.00 3.85
1982 5063 1.446099 GCTGGATCGACGTGCTCAA 60.446 57.895 0.00 0.00 0.00 3.02
2049 5130 2.029964 TCGGGCGAAGAAGCGTTT 59.970 55.556 0.00 0.00 38.18 3.60
2051 5132 2.126850 GGGCGAAGAAGCGTTTGC 60.127 61.111 0.00 1.26 43.24 3.68
2053 5134 1.008995 GGCGAAGAAGCGTTTGCAA 60.009 52.632 0.00 0.00 46.23 4.08
2092 5173 1.961394 GGTCTGCATACGTGGAGGATA 59.039 52.381 0.00 0.00 43.33 2.59
2122 5203 5.484715 GTGTTGGCACTGTAGGATTAACTA 58.515 41.667 0.00 0.00 42.13 2.24
2154 5241 3.216800 TGAGCAGCAGAATGACTTTTGT 58.783 40.909 0.00 0.00 39.69 2.83
2166 5253 1.535896 GACTTTTGTTCGGGCCTCTTC 59.464 52.381 0.84 0.00 0.00 2.87
2192 5279 2.714250 ACCCACCTGTATTTCCTGTGAA 59.286 45.455 0.00 0.00 0.00 3.18
2216 5303 3.149196 GTGCCTTCCTTGATGAAAGTGA 58.851 45.455 0.00 0.00 33.66 3.41
2227 5314 8.786898 TCCTTGATGAAAGTGAAATAACAGAAG 58.213 33.333 0.00 0.00 33.66 2.85
2246 5333 5.050490 AGAAGCGTTATTGCATCGAACTAT 58.950 37.500 0.00 0.00 37.63 2.12
2249 5339 6.211664 AGCGTTATTGCATCGAACTATAAC 57.788 37.500 17.90 17.90 37.31 1.89
2263 5353 7.062322 TCGAACTATAACTATTACTGTCCCCA 58.938 38.462 0.00 0.00 0.00 4.96
2265 5355 8.365647 CGAACTATAACTATTACTGTCCCCATT 58.634 37.037 0.00 0.00 0.00 3.16
2268 5358 9.220906 ACTATAACTATTACTGTCCCCATTTCA 57.779 33.333 0.00 0.00 0.00 2.69
2271 5361 7.881775 AACTATTACTGTCCCCATTTCAATC 57.118 36.000 0.00 0.00 0.00 2.67
2272 5362 6.365520 ACTATTACTGTCCCCATTTCAATCC 58.634 40.000 0.00 0.00 0.00 3.01
2273 5363 2.532250 ACTGTCCCCATTTCAATCCC 57.468 50.000 0.00 0.00 0.00 3.85
2274 5364 2.003072 ACTGTCCCCATTTCAATCCCT 58.997 47.619 0.00 0.00 0.00 4.20
2275 5365 2.383338 ACTGTCCCCATTTCAATCCCTT 59.617 45.455 0.00 0.00 0.00 3.95
2276 5366 2.762327 CTGTCCCCATTTCAATCCCTTG 59.238 50.000 0.00 0.00 0.00 3.61
2277 5367 2.111613 TGTCCCCATTTCAATCCCTTGT 59.888 45.455 0.00 0.00 33.87 3.16
2292 5382 0.976963 CTTGTGTGCGCGCTTAATTG 59.023 50.000 33.29 14.41 0.00 2.32
2293 5383 0.309302 TTGTGTGCGCGCTTAATTGT 59.691 45.000 33.29 0.00 0.00 2.71
2363 5453 4.526262 AGACTAGAGATATGCATGACCCAC 59.474 45.833 10.16 0.00 0.00 4.61
2364 5454 2.827800 AGAGATATGCATGACCCACG 57.172 50.000 10.16 0.00 0.00 4.94
2365 5455 1.345741 AGAGATATGCATGACCCACGG 59.654 52.381 10.16 0.00 0.00 4.94
2366 5456 1.344438 GAGATATGCATGACCCACGGA 59.656 52.381 10.16 0.00 0.00 4.69
2374 5465 0.325671 ATGACCCACGGAGGATCACT 60.326 55.000 0.00 0.00 41.22 3.41
2375 5466 1.257750 TGACCCACGGAGGATCACTG 61.258 60.000 0.00 0.00 41.22 3.66
2377 5468 2.735772 CCCACGGAGGATCACTGGG 61.736 68.421 0.00 0.00 41.22 4.45
2402 5493 3.574826 GGTTAGCATGGAGTAGGAGTAGG 59.425 52.174 0.00 0.00 0.00 3.18
2403 5494 4.471548 GTTAGCATGGAGTAGGAGTAGGA 58.528 47.826 0.00 0.00 0.00 2.94
2404 5495 3.237268 AGCATGGAGTAGGAGTAGGAG 57.763 52.381 0.00 0.00 0.00 3.69
2405 5496 2.516277 AGCATGGAGTAGGAGTAGGAGT 59.484 50.000 0.00 0.00 0.00 3.85
2406 5497 3.722627 AGCATGGAGTAGGAGTAGGAGTA 59.277 47.826 0.00 0.00 0.00 2.59
2407 5498 4.076394 GCATGGAGTAGGAGTAGGAGTAG 58.924 52.174 0.00 0.00 0.00 2.57
2429 5520 5.022787 AGCATATGTCTATCTTCTCCTCCC 58.977 45.833 4.29 0.00 0.00 4.30
2451 5546 0.769873 GTCTCATCTCATGGGGCCAT 59.230 55.000 4.39 0.00 37.08 4.40
2465 5560 1.523524 GCCATCCATGCCAAAAGGG 59.476 57.895 0.00 0.00 40.85 3.95
2476 5571 1.478105 GCCAAAAGGGGTTGCTAGATG 59.522 52.381 0.00 0.00 37.04 2.90
2478 5573 3.635591 CCAAAAGGGGTTGCTAGATGAT 58.364 45.455 0.00 0.00 0.00 2.45
2480 5575 4.019174 CAAAAGGGGTTGCTAGATGATGT 58.981 43.478 0.00 0.00 0.00 3.06
2499 5594 0.976073 TTAGAGAAGGCCACTCCCCG 60.976 60.000 21.07 0.00 35.27 5.73
2511 5606 1.366366 CTCCCCGTTCGACACACTT 59.634 57.895 0.00 0.00 0.00 3.16
2514 5609 1.068417 CCCGTTCGACACACTTGGA 59.932 57.895 0.00 0.00 0.00 3.53
2515 5610 0.320421 CCCGTTCGACACACTTGGAT 60.320 55.000 0.00 0.00 0.00 3.41
2516 5611 1.068474 CCGTTCGACACACTTGGATC 58.932 55.000 0.00 0.00 0.00 3.36
2518 5613 1.336887 CGTTCGACACACTTGGATCCT 60.337 52.381 14.23 0.00 0.00 3.24
2519 5614 2.767505 GTTCGACACACTTGGATCCTT 58.232 47.619 14.23 0.00 0.00 3.36
2520 5615 2.737252 GTTCGACACACTTGGATCCTTC 59.263 50.000 14.23 0.00 0.00 3.46
2531 5626 7.829211 CACACTTGGATCCTTCTTTATCCTTTA 59.171 37.037 14.23 0.00 41.94 1.85
2537 5632 7.007116 GGATCCTTCTTTATCCTTTATTGGCT 58.993 38.462 3.84 0.00 38.92 4.75
2547 5642 3.255642 TCCTTTATTGGCTTGTGCACTTC 59.744 43.478 19.41 6.70 41.91 3.01
2558 5653 1.134521 TGTGCACTTCTCCGTCAGTTT 60.135 47.619 19.41 0.00 0.00 2.66
2603 5698 5.994250 AGCAGCAAAGAGAAGACCATAATA 58.006 37.500 0.00 0.00 0.00 0.98
2609 5704 9.077885 AGCAAAGAGAAGACCATAATAAAACAA 57.922 29.630 0.00 0.00 0.00 2.83
2650 5745 1.291132 GCCTGATTAGACCGCACTTC 58.709 55.000 0.00 0.00 0.00 3.01
2674 5769 6.606395 TCTTCTAAACGGCCTCTTATCTTAGT 59.394 38.462 0.00 0.00 0.00 2.24
2678 5773 3.633418 ACGGCCTCTTATCTTAGTGACT 58.367 45.455 0.00 0.00 0.00 3.41
2684 5779 6.321690 GGCCTCTTATCTTAGTGACTAACAGA 59.678 42.308 0.00 0.00 0.00 3.41
2726 5821 1.270305 TGTGACACTGGCTGAAGCTAC 60.270 52.381 7.20 0.00 41.70 3.58
2739 5834 2.106511 TGAAGCTACAAGACCAAAGGCT 59.893 45.455 0.00 0.00 0.00 4.58
2740 5835 2.959465 AGCTACAAGACCAAAGGCTT 57.041 45.000 0.00 0.00 0.00 4.35
2741 5836 2.508526 AGCTACAAGACCAAAGGCTTG 58.491 47.619 7.11 7.11 40.22 4.01
2826 5925 1.371183 CGCCCAGGTGTTCTTCTCA 59.629 57.895 0.00 0.00 0.00 3.27
2830 5929 1.694150 CCCAGGTGTTCTTCTCAGACA 59.306 52.381 0.00 0.00 0.00 3.41
2834 5933 2.139118 GGTGTTCTTCTCAGACAGTGC 58.861 52.381 0.00 0.00 0.00 4.40
2840 5939 2.819019 TCTTCTCAGACAGTGCAGAGAG 59.181 50.000 9.01 3.81 38.27 3.20
2841 5940 2.575805 TCTCAGACAGTGCAGAGAGA 57.424 50.000 5.86 4.03 32.57 3.10
2891 5990 0.252558 ACGTGGAAGTAGGGATGGGT 60.253 55.000 0.00 0.00 0.00 4.51
2923 6022 4.651045 AGCTTGTTCAAATCCTCAAGGTTT 59.349 37.500 0.00 0.00 43.03 3.27
2944 6043 3.877612 TTACCGTGACACGCGTCCG 62.878 63.158 22.46 9.56 41.85 4.79
2948 6047 2.431942 GTGACACGCGTCCGGAAT 60.432 61.111 9.86 0.00 41.85 3.01
2949 6048 2.126228 TGACACGCGTCCGGAATC 60.126 61.111 9.86 0.00 41.85 2.52
2963 6062 1.134670 CGGAATCCTCGGAAAGCTCTT 60.135 52.381 0.00 0.00 0.00 2.85
2964 6063 2.678190 CGGAATCCTCGGAAAGCTCTTT 60.678 50.000 0.00 0.00 35.14 2.52
2976 6075 3.460857 AAGCTCTTTCGTGAGACTTGT 57.539 42.857 0.00 0.00 41.84 3.16
2982 6081 2.218953 TTCGTGAGACTTGTGTCCAC 57.781 50.000 0.00 0.00 43.91 4.02
2994 6093 5.365619 ACTTGTGTCCACGTTTCTAGATTT 58.634 37.500 0.00 0.00 0.00 2.17
2995 6094 5.820947 ACTTGTGTCCACGTTTCTAGATTTT 59.179 36.000 0.00 0.00 0.00 1.82
2996 6095 5.666969 TGTGTCCACGTTTCTAGATTTTG 57.333 39.130 0.00 0.00 0.00 2.44
2997 6096 4.024387 TGTGTCCACGTTTCTAGATTTTGC 60.024 41.667 0.00 0.00 0.00 3.68
2998 6097 4.024387 GTGTCCACGTTTCTAGATTTTGCA 60.024 41.667 0.00 0.00 0.00 4.08
2999 6098 4.213270 TGTCCACGTTTCTAGATTTTGCAG 59.787 41.667 0.00 0.00 0.00 4.41
3000 6099 3.188460 TCCACGTTTCTAGATTTTGCAGC 59.812 43.478 0.00 0.00 0.00 5.25
3001 6100 3.189287 CCACGTTTCTAGATTTTGCAGCT 59.811 43.478 0.00 0.00 0.00 4.24
3002 6101 4.398247 CACGTTTCTAGATTTTGCAGCTC 58.602 43.478 0.00 0.00 0.00 4.09
3017 6116 1.658673 GCTCTTGCAGCTTGCTTGT 59.341 52.632 9.12 0.00 45.83 3.16
3029 6128 1.737355 TTGCTTGTCCAAGTGGCAGC 61.737 55.000 8.69 8.36 40.45 5.25
3030 6129 2.924105 GCTTGTCCAAGTGGCAGCC 61.924 63.158 3.66 3.66 40.45 4.85
3032 6131 3.414136 TTGTCCAAGTGGCAGCCGT 62.414 57.895 7.03 0.00 34.44 5.68
3034 6133 2.033194 GTCCAAGTGGCAGCCGTAC 61.033 63.158 7.03 0.00 34.44 3.67
3035 6134 3.118454 CCAAGTGGCAGCCGTACG 61.118 66.667 8.69 8.69 0.00 3.67
3036 6135 3.788766 CAAGTGGCAGCCGTACGC 61.789 66.667 10.49 5.63 37.98 4.42
3037 6136 4.308458 AAGTGGCAGCCGTACGCA 62.308 61.111 10.49 0.00 41.38 5.24
3040 6139 4.308458 TGGCAGCCGTACGCACTT 62.308 61.111 10.49 0.00 41.38 3.16
3041 6140 2.125832 GGCAGCCGTACGCACTTA 60.126 61.111 10.49 0.00 41.38 2.24
3042 6141 1.520787 GGCAGCCGTACGCACTTAT 60.521 57.895 10.49 0.00 41.38 1.73
3043 6142 1.488261 GGCAGCCGTACGCACTTATC 61.488 60.000 10.49 1.43 41.38 1.75
3044 6143 0.527817 GCAGCCGTACGCACTTATCT 60.528 55.000 10.49 0.00 41.38 1.98
3046 6145 0.029035 AGCCGTACGCACTTATCTCG 59.971 55.000 10.49 0.00 41.38 4.04
3047 6146 0.933509 GCCGTACGCACTTATCTCGG 60.934 60.000 10.49 0.00 39.52 4.63
3050 6149 1.756367 GTACGCACTTATCTCGGCTC 58.244 55.000 0.00 0.00 0.00 4.70
3065 6167 1.144936 GCTCCTCTGGTTCATCCGG 59.855 63.158 0.00 0.00 43.70 5.14
3066 6168 1.617947 GCTCCTCTGGTTCATCCGGT 61.618 60.000 0.00 0.00 42.90 5.28
3070 6172 2.084546 CCTCTGGTTCATCCGGTTTTC 58.915 52.381 0.00 0.00 42.90 2.29
3071 6173 2.084546 CTCTGGTTCATCCGGTTTTCC 58.915 52.381 0.00 0.00 42.90 3.13
3072 6174 1.702957 TCTGGTTCATCCGGTTTTCCT 59.297 47.619 0.00 0.00 42.90 3.36
3073 6175 2.107552 TCTGGTTCATCCGGTTTTCCTT 59.892 45.455 0.00 0.00 42.90 3.36
3074 6176 2.890945 CTGGTTCATCCGGTTTTCCTTT 59.109 45.455 0.00 0.00 39.52 3.11
3075 6177 2.888414 TGGTTCATCCGGTTTTCCTTTC 59.112 45.455 0.00 0.00 39.52 2.62
3076 6178 2.230508 GGTTCATCCGGTTTTCCTTTCC 59.769 50.000 0.00 0.00 37.95 3.13
3077 6179 2.209690 TCATCCGGTTTTCCTTTCCC 57.790 50.000 0.00 0.00 37.95 3.97
3078 6180 1.182667 CATCCGGTTTTCCTTTCCCC 58.817 55.000 0.00 0.00 37.95 4.81
3080 6182 1.073548 CCGGTTTTCCTTTCCCCGA 59.926 57.895 0.00 0.00 41.08 5.14
3081 6183 1.239296 CCGGTTTTCCTTTCCCCGAC 61.239 60.000 0.00 0.00 41.08 4.79
3082 6184 0.535553 CGGTTTTCCTTTCCCCGACA 60.536 55.000 0.00 0.00 41.08 4.35
3084 6186 1.544246 GGTTTTCCTTTCCCCGACATG 59.456 52.381 0.00 0.00 36.94 3.21
3085 6187 2.510613 GTTTTCCTTTCCCCGACATGA 58.489 47.619 0.00 0.00 0.00 3.07
3086 6188 2.888414 GTTTTCCTTTCCCCGACATGAA 59.112 45.455 0.00 0.00 0.00 2.57
3087 6189 2.961531 TTCCTTTCCCCGACATGAAA 57.038 45.000 0.00 0.00 0.00 2.69
3088 6190 2.489938 TCCTTTCCCCGACATGAAAG 57.510 50.000 0.00 5.27 44.45 2.62
3090 6192 0.811281 CTTTCCCCGACATGAAAGGC 59.189 55.000 0.00 0.00 42.28 4.35
3091 6193 0.610785 TTTCCCCGACATGAAAGGCC 60.611 55.000 0.00 0.00 0.00 5.19
3092 6194 1.784301 TTCCCCGACATGAAAGGCCA 61.784 55.000 5.01 0.00 0.00 5.36
3093 6195 1.304052 CCCCGACATGAAAGGCCAA 60.304 57.895 5.01 0.00 0.00 4.52
3094 6196 0.897863 CCCCGACATGAAAGGCCAAA 60.898 55.000 5.01 0.00 0.00 3.28
3095 6197 0.965439 CCCGACATGAAAGGCCAAAA 59.035 50.000 5.01 0.00 0.00 2.44
3096 6198 1.067635 CCCGACATGAAAGGCCAAAAG 60.068 52.381 5.01 0.00 0.00 2.27
3097 6199 1.067635 CCGACATGAAAGGCCAAAAGG 60.068 52.381 5.01 0.00 0.00 3.11
3098 6200 1.613437 CGACATGAAAGGCCAAAAGGT 59.387 47.619 5.01 0.00 0.00 3.50
3099 6201 2.607771 CGACATGAAAGGCCAAAAGGTG 60.608 50.000 5.01 0.00 0.00 4.00
3100 6202 2.365293 GACATGAAAGGCCAAAAGGTGT 59.635 45.455 5.01 2.02 0.00 4.16
3101 6203 2.102925 ACATGAAAGGCCAAAAGGTGTG 59.897 45.455 5.01 0.00 0.00 3.82
3102 6204 0.463620 TGAAAGGCCAAAAGGTGTGC 59.536 50.000 5.01 0.00 0.00 4.57
3103 6205 0.249868 GAAAGGCCAAAAGGTGTGCC 60.250 55.000 5.01 0.00 41.45 5.01
3104 6206 2.026945 AAAGGCCAAAAGGTGTGCCG 62.027 55.000 5.01 0.00 44.16 5.69
3105 6207 3.223589 GGCCAAAAGGTGTGCCGT 61.224 61.111 0.00 0.00 40.50 5.68
3106 6208 2.027460 GCCAAAAGGTGTGCCGTG 59.973 61.111 0.00 0.00 40.50 4.94
3107 6209 2.485795 GCCAAAAGGTGTGCCGTGA 61.486 57.895 0.00 0.00 40.50 4.35
3108 6210 2.010582 GCCAAAAGGTGTGCCGTGAA 62.011 55.000 0.00 0.00 40.50 3.18
3109 6211 0.030638 CCAAAAGGTGTGCCGTGAAG 59.969 55.000 0.00 0.00 40.50 3.02
3110 6212 0.594796 CAAAAGGTGTGCCGTGAAGC 60.595 55.000 0.00 0.00 40.50 3.86
3111 6213 1.734388 AAAAGGTGTGCCGTGAAGCC 61.734 55.000 0.00 0.00 40.50 4.35
3112 6214 4.643387 AGGTGTGCCGTGAAGCCC 62.643 66.667 0.00 0.00 40.50 5.19
3113 6215 4.643387 GGTGTGCCGTGAAGCCCT 62.643 66.667 0.00 0.00 0.00 5.19
3114 6216 2.345991 GTGTGCCGTGAAGCCCTA 59.654 61.111 0.00 0.00 0.00 3.53
3115 6217 1.302192 GTGTGCCGTGAAGCCCTAA 60.302 57.895 0.00 0.00 0.00 2.69
3116 6218 0.887387 GTGTGCCGTGAAGCCCTAAA 60.887 55.000 0.00 0.00 0.00 1.85
3117 6219 0.179015 TGTGCCGTGAAGCCCTAAAA 60.179 50.000 0.00 0.00 0.00 1.52
3118 6220 1.173913 GTGCCGTGAAGCCCTAAAAT 58.826 50.000 0.00 0.00 0.00 1.82
3119 6221 1.135402 GTGCCGTGAAGCCCTAAAATG 60.135 52.381 0.00 0.00 0.00 2.32
3120 6222 1.173913 GCCGTGAAGCCCTAAAATGT 58.826 50.000 0.00 0.00 0.00 2.71
3121 6223 1.544246 GCCGTGAAGCCCTAAAATGTT 59.456 47.619 0.00 0.00 0.00 2.71
3122 6224 2.029380 GCCGTGAAGCCCTAAAATGTTT 60.029 45.455 0.00 0.00 0.00 2.83
3123 6225 3.554129 GCCGTGAAGCCCTAAAATGTTTT 60.554 43.478 0.00 0.00 0.00 2.43
3124 6226 4.627058 CCGTGAAGCCCTAAAATGTTTTT 58.373 39.130 0.00 0.00 0.00 1.94
3164 6266 7.216317 CGAATCGTGAAATCTGTATTTGTTTCC 59.784 37.037 0.00 0.00 35.41 3.13
3168 6274 5.342259 GTGAAATCTGTATTTGTTTCCGCAC 59.658 40.000 0.00 0.00 35.41 5.34
3176 6282 0.681564 TTGTTTCCGCACACTGGGTT 60.682 50.000 0.00 0.00 0.00 4.11
3178 6284 1.527380 TTTCCGCACACTGGGTTCC 60.527 57.895 0.00 0.00 0.00 3.62
3180 6286 2.203280 CCGCACACTGGGTTCCAA 60.203 61.111 0.00 0.00 30.80 3.53
3188 6294 0.759060 ACTGGGTTCCAAAAGGGTGC 60.759 55.000 0.00 0.00 38.11 5.01
3196 6302 0.958091 CCAAAAGGGTGCATTCGTCA 59.042 50.000 0.00 0.00 0.00 4.35
3220 6326 3.488489 CTGTAAAAGAATTTGGTCGCCG 58.512 45.455 0.00 0.00 39.02 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.791801 AGTGCATAACAATATGGATTATGTGTA 57.208 29.630 12.17 2.42 41.20 2.90
15 16 8.696043 AGTGCATAACAATATGGATTATGTGT 57.304 30.769 12.17 0.00 41.20 3.72
17 18 8.950210 GCTAGTGCATAACAATATGGATTATGT 58.050 33.333 12.17 0.00 41.20 2.29
18 19 8.118607 CGCTAGTGCATAACAATATGGATTATG 58.881 37.037 0.00 8.50 41.20 1.90
19 20 7.201644 GCGCTAGTGCATAACAATATGGATTAT 60.202 37.037 23.15 0.00 41.20 1.28
20 21 6.092122 GCGCTAGTGCATAACAATATGGATTA 59.908 38.462 23.15 0.00 41.20 1.75
21 22 5.106555 GCGCTAGTGCATAACAATATGGATT 60.107 40.000 23.15 0.00 41.20 3.01
22 23 4.393062 GCGCTAGTGCATAACAATATGGAT 59.607 41.667 23.15 0.00 41.20 3.41
23 24 3.745975 GCGCTAGTGCATAACAATATGGA 59.254 43.478 23.15 0.00 39.49 3.41
24 25 3.423515 CGCGCTAGTGCATAACAATATGG 60.424 47.826 26.75 3.24 39.49 2.74
25 26 3.184379 ACGCGCTAGTGCATAACAATATG 59.816 43.478 26.75 9.62 41.59 1.78
26 27 3.184379 CACGCGCTAGTGCATAACAATAT 59.816 43.478 26.75 0.00 39.64 1.28
27 28 2.538037 CACGCGCTAGTGCATAACAATA 59.462 45.455 26.75 0.00 39.64 1.90
28 29 1.327460 CACGCGCTAGTGCATAACAAT 59.673 47.619 26.75 1.33 39.64 2.71
29 30 0.718904 CACGCGCTAGTGCATAACAA 59.281 50.000 26.75 0.00 39.64 2.83
30 31 0.389296 ACACGCGCTAGTGCATAACA 60.389 50.000 26.75 0.00 45.45 2.41
31 32 0.025001 CACACGCGCTAGTGCATAAC 59.975 55.000 26.75 0.00 45.45 1.89
32 33 2.368856 CACACGCGCTAGTGCATAA 58.631 52.632 26.75 0.00 45.45 1.90
33 34 4.086860 CACACGCGCTAGTGCATA 57.913 55.556 26.75 0.00 45.45 3.14
44 45 0.787787 TCTATTTCACACGCACACGC 59.212 50.000 0.00 0.00 45.53 5.34
46 47 3.000041 TCCATCTATTTCACACGCACAC 59.000 45.455 0.00 0.00 0.00 3.82
47 48 3.326836 TCCATCTATTTCACACGCACA 57.673 42.857 0.00 0.00 0.00 4.57
48 49 4.882671 AATCCATCTATTTCACACGCAC 57.117 40.909 0.00 0.00 0.00 5.34
49 50 6.287525 TCATAATCCATCTATTTCACACGCA 58.712 36.000 0.00 0.00 0.00 5.24
50 51 6.785488 TCATAATCCATCTATTTCACACGC 57.215 37.500 0.00 0.00 0.00 5.34
51 52 8.768957 AGATCATAATCCATCTATTTCACACG 57.231 34.615 0.00 0.00 31.78 4.49
52 53 8.867935 CGAGATCATAATCCATCTATTTCACAC 58.132 37.037 0.00 0.00 31.78 3.82
53 54 8.588472 ACGAGATCATAATCCATCTATTTCACA 58.412 33.333 0.00 0.00 31.78 3.58
54 55 8.994429 ACGAGATCATAATCCATCTATTTCAC 57.006 34.615 0.00 0.00 31.78 3.18
56 57 9.522804 GGTACGAGATCATAATCCATCTATTTC 57.477 37.037 0.00 0.00 31.78 2.17
57 58 8.478877 GGGTACGAGATCATAATCCATCTATTT 58.521 37.037 0.00 0.00 31.78 1.40
58 59 7.619698 TGGGTACGAGATCATAATCCATCTATT 59.380 37.037 0.00 0.00 31.78 1.73
59 60 7.126061 TGGGTACGAGATCATAATCCATCTAT 58.874 38.462 0.00 0.00 31.78 1.98
60 61 6.490492 TGGGTACGAGATCATAATCCATCTA 58.510 40.000 0.00 0.00 31.78 1.98
61 62 5.333581 TGGGTACGAGATCATAATCCATCT 58.666 41.667 0.00 0.00 31.78 2.90
62 63 5.661056 TGGGTACGAGATCATAATCCATC 57.339 43.478 0.00 0.00 31.78 3.51
63 64 6.627087 ATTGGGTACGAGATCATAATCCAT 57.373 37.500 0.00 0.00 31.78 3.41
64 65 7.453439 TCTTATTGGGTACGAGATCATAATCCA 59.547 37.037 0.00 0.00 31.78 3.41
65 66 7.837863 TCTTATTGGGTACGAGATCATAATCC 58.162 38.462 0.00 0.00 31.78 3.01
68 69 9.749340 TCTATCTTATTGGGTACGAGATCATAA 57.251 33.333 0.00 0.00 0.00 1.90
69 70 9.922477 ATCTATCTTATTGGGTACGAGATCATA 57.078 33.333 0.00 0.00 0.00 2.15
70 71 8.830915 ATCTATCTTATTGGGTACGAGATCAT 57.169 34.615 0.00 0.00 0.00 2.45
71 72 9.922477 ATATCTATCTTATTGGGTACGAGATCA 57.078 33.333 0.00 0.00 0.00 2.92
73 74 9.702253 ACATATCTATCTTATTGGGTACGAGAT 57.298 33.333 0.00 0.00 0.00 2.75
74 75 8.957466 CACATATCTATCTTATTGGGTACGAGA 58.043 37.037 0.00 0.00 0.00 4.04
75 76 8.740906 ACACATATCTATCTTATTGGGTACGAG 58.259 37.037 0.00 0.00 0.00 4.18
76 77 8.520351 CACACATATCTATCTTATTGGGTACGA 58.480 37.037 0.00 0.00 0.00 3.43
77 78 8.304596 ACACACATATCTATCTTATTGGGTACG 58.695 37.037 0.00 0.00 0.00 3.67
78 79 9.424319 CACACACATATCTATCTTATTGGGTAC 57.576 37.037 0.00 0.00 0.00 3.34
79 80 9.154632 ACACACACATATCTATCTTATTGGGTA 57.845 33.333 0.00 0.00 0.00 3.69
80 81 7.933577 CACACACACATATCTATCTTATTGGGT 59.066 37.037 0.00 0.00 0.00 4.51
81 82 7.933577 ACACACACACATATCTATCTTATTGGG 59.066 37.037 0.00 0.00 0.00 4.12
82 83 8.768019 CACACACACACATATCTATCTTATTGG 58.232 37.037 0.00 0.00 0.00 3.16
83 84 9.317936 ACACACACACACATATCTATCTTATTG 57.682 33.333 0.00 0.00 0.00 1.90
84 85 9.890629 AACACACACACACATATCTATCTTATT 57.109 29.630 0.00 0.00 0.00 1.40
87 88 8.749354 TCTAACACACACACACATATCTATCTT 58.251 33.333 0.00 0.00 0.00 2.40
88 89 8.293699 TCTAACACACACACACATATCTATCT 57.706 34.615 0.00 0.00 0.00 1.98
89 90 8.406297 TCTCTAACACACACACACATATCTATC 58.594 37.037 0.00 0.00 0.00 2.08
90 91 8.293699 TCTCTAACACACACACACATATCTAT 57.706 34.615 0.00 0.00 0.00 1.98
91 92 7.610305 TCTCTCTAACACACACACACATATCTA 59.390 37.037 0.00 0.00 0.00 1.98
92 93 6.434340 TCTCTCTAACACACACACACATATCT 59.566 38.462 0.00 0.00 0.00 1.98
93 94 6.621613 TCTCTCTAACACACACACACATATC 58.378 40.000 0.00 0.00 0.00 1.63
94 95 6.434340 TCTCTCTCTAACACACACACACATAT 59.566 38.462 0.00 0.00 0.00 1.78
95 96 5.768164 TCTCTCTCTAACACACACACACATA 59.232 40.000 0.00 0.00 0.00 2.29
96 97 4.584743 TCTCTCTCTAACACACACACACAT 59.415 41.667 0.00 0.00 0.00 3.21
97 98 3.951680 TCTCTCTCTAACACACACACACA 59.048 43.478 0.00 0.00 0.00 3.72
98 99 4.276183 TCTCTCTCTCTAACACACACACAC 59.724 45.833 0.00 0.00 0.00 3.82
99 100 4.461198 TCTCTCTCTCTAACACACACACA 58.539 43.478 0.00 0.00 0.00 3.72
100 101 4.083003 CCTCTCTCTCTCTAACACACACAC 60.083 50.000 0.00 0.00 0.00 3.82
101 102 4.075682 CCTCTCTCTCTCTAACACACACA 58.924 47.826 0.00 0.00 0.00 3.72
102 103 3.442273 CCCTCTCTCTCTCTAACACACAC 59.558 52.174 0.00 0.00 0.00 3.82
103 104 3.562393 CCCCTCTCTCTCTCTAACACACA 60.562 52.174 0.00 0.00 0.00 3.72
104 105 3.020984 CCCCTCTCTCTCTCTAACACAC 58.979 54.545 0.00 0.00 0.00 3.82
105 106 2.024846 CCCCCTCTCTCTCTCTAACACA 60.025 54.545 0.00 0.00 0.00 3.72
106 107 2.661718 CCCCCTCTCTCTCTCTAACAC 58.338 57.143 0.00 0.00 0.00 3.32
123 124 3.036959 TCTCTCCCCCTCTCCCCC 61.037 72.222 0.00 0.00 0.00 5.40
124 125 2.015726 TCTCTCTCCCCCTCTCCCC 61.016 68.421 0.00 0.00 0.00 4.81
125 126 1.293683 ACTCTCTCTCCCCCTCTCCC 61.294 65.000 0.00 0.00 0.00 4.30
126 127 0.106217 CACTCTCTCTCCCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
127 128 0.923358 TCACTCTCTCTCCCCCTCTC 59.077 60.000 0.00 0.00 0.00 3.20
128 129 0.926293 CTCACTCTCTCTCCCCCTCT 59.074 60.000 0.00 0.00 0.00 3.69
129 130 0.106217 CCTCACTCTCTCTCCCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
130 131 0.553862 TCCTCACTCTCTCTCCCCCT 60.554 60.000 0.00 0.00 0.00 4.79
131 132 0.106217 CTCCTCACTCTCTCTCCCCC 60.106 65.000 0.00 0.00 0.00 5.40
132 133 0.106217 CCTCCTCACTCTCTCTCCCC 60.106 65.000 0.00 0.00 0.00 4.81
133 134 0.923358 TCCTCCTCACTCTCTCTCCC 59.077 60.000 0.00 0.00 0.00 4.30
134 135 1.133792 CCTCCTCCTCACTCTCTCTCC 60.134 61.905 0.00 0.00 0.00 3.71
135 136 1.133792 CCCTCCTCCTCACTCTCTCTC 60.134 61.905 0.00 0.00 0.00 3.20
136 137 0.926293 CCCTCCTCCTCACTCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
137 138 0.923358 TCCCTCCTCCTCACTCTCTC 59.077 60.000 0.00 0.00 0.00 3.20
138 139 0.926293 CTCCCTCCTCCTCACTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
139 140 0.106217 CCTCCCTCCTCCTCACTCTC 60.106 65.000 0.00 0.00 0.00 3.20
140 141 1.589399 CCCTCCCTCCTCCTCACTCT 61.589 65.000 0.00 0.00 0.00 3.24
141 142 1.075600 CCCTCCCTCCTCCTCACTC 60.076 68.421 0.00 0.00 0.00 3.51
142 143 1.547755 TCCCTCCCTCCTCCTCACT 60.548 63.158 0.00 0.00 0.00 3.41
143 144 1.075600 CTCCCTCCCTCCTCCTCAC 60.076 68.421 0.00 0.00 0.00 3.51
144 145 1.230650 TCTCCCTCCCTCCTCCTCA 60.231 63.158 0.00 0.00 0.00 3.86
145 146 1.541672 CTCTCCCTCCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
146 147 2.018086 CCTCTCCCTCCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
147 148 2.612251 CCTCTCCCTCCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
148 149 2.329399 ACCCTCTCCCTCCCTCCTC 61.329 68.421 0.00 0.00 0.00 3.71
149 150 2.204705 ACCCTCTCCCTCCCTCCT 60.205 66.667 0.00 0.00 0.00 3.69
150 151 2.041405 CACCCTCTCCCTCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
151 152 1.687493 CACACCCTCTCCCTCCCTC 60.687 68.421 0.00 0.00 0.00 4.30
152 153 2.452114 CACACCCTCTCCCTCCCT 59.548 66.667 0.00 0.00 0.00 4.20
153 154 2.122954 ACACACCCTCTCCCTCCC 59.877 66.667 0.00 0.00 0.00 4.30
154 155 1.536662 ACACACACCCTCTCCCTCC 60.537 63.158 0.00 0.00 0.00 4.30
155 156 1.122019 ACACACACACCCTCTCCCTC 61.122 60.000 0.00 0.00 0.00 4.30
156 157 1.074471 ACACACACACCCTCTCCCT 60.074 57.895 0.00 0.00 0.00 4.20
157 158 1.071471 CACACACACACCCTCTCCC 59.929 63.158 0.00 0.00 0.00 4.30
158 159 0.034059 CTCACACACACACCCTCTCC 59.966 60.000 0.00 0.00 0.00 3.71
159 160 1.040646 TCTCACACACACACCCTCTC 58.959 55.000 0.00 0.00 0.00 3.20
160 161 1.496060 TTCTCACACACACACCCTCT 58.504 50.000 0.00 0.00 0.00 3.69
161 162 2.550830 ATTCTCACACACACACCCTC 57.449 50.000 0.00 0.00 0.00 4.30
162 163 2.951642 CAAATTCTCACACACACACCCT 59.048 45.455 0.00 0.00 0.00 4.34
163 164 2.948979 TCAAATTCTCACACACACACCC 59.051 45.455 0.00 0.00 0.00 4.61
164 165 4.539870 CATCAAATTCTCACACACACACC 58.460 43.478 0.00 0.00 0.00 4.16
165 166 4.036734 ACCATCAAATTCTCACACACACAC 59.963 41.667 0.00 0.00 0.00 3.82
166 167 4.206375 ACCATCAAATTCTCACACACACA 58.794 39.130 0.00 0.00 0.00 3.72
167 168 4.836125 ACCATCAAATTCTCACACACAC 57.164 40.909 0.00 0.00 0.00 3.82
168 169 6.951062 TTTACCATCAAATTCTCACACACA 57.049 33.333 0.00 0.00 0.00 3.72
190 191 3.261981 AGTGACAGTGACGACCTTTTT 57.738 42.857 0.00 0.00 0.00 1.94
191 192 2.981859 AGTGACAGTGACGACCTTTT 57.018 45.000 0.00 0.00 0.00 2.27
192 193 2.981859 AAGTGACAGTGACGACCTTT 57.018 45.000 0.00 0.00 0.00 3.11
193 194 4.602340 ATTAAGTGACAGTGACGACCTT 57.398 40.909 0.00 0.00 0.00 3.50
194 195 5.185249 ACATATTAAGTGACAGTGACGACCT 59.815 40.000 0.00 0.00 0.00 3.85
195 196 5.408356 ACATATTAAGTGACAGTGACGACC 58.592 41.667 0.00 0.00 0.00 4.79
196 197 7.913821 TCATACATATTAAGTGACAGTGACGAC 59.086 37.037 0.00 0.00 0.00 4.34
197 198 7.992008 TCATACATATTAAGTGACAGTGACGA 58.008 34.615 0.00 0.00 0.00 4.20
198 199 8.129211 TCTCATACATATTAAGTGACAGTGACG 58.871 37.037 0.00 0.00 0.00 4.35
199 200 9.803315 TTCTCATACATATTAAGTGACAGTGAC 57.197 33.333 0.00 0.00 0.00 3.67
259 260 4.585581 ACGGGCCACATTAACTTTAAAAGT 59.414 37.500 4.39 0.00 45.46 2.66
260 261 5.128992 ACGGGCCACATTAACTTTAAAAG 57.871 39.130 4.39 0.00 0.00 2.27
261 262 5.290386 CAACGGGCCACATTAACTTTAAAA 58.710 37.500 4.39 0.00 0.00 1.52
262 263 4.796618 GCAACGGGCCACATTAACTTTAAA 60.797 41.667 4.39 0.00 36.11 1.52
263 264 3.305471 GCAACGGGCCACATTAACTTTAA 60.305 43.478 4.39 0.00 36.11 1.52
264 265 2.229302 GCAACGGGCCACATTAACTTTA 59.771 45.455 4.39 0.00 36.11 1.85
265 266 1.000394 GCAACGGGCCACATTAACTTT 60.000 47.619 4.39 0.00 36.11 2.66
266 267 0.601057 GCAACGGGCCACATTAACTT 59.399 50.000 4.39 0.00 36.11 2.66
267 268 0.538516 TGCAACGGGCCACATTAACT 60.539 50.000 4.39 0.00 43.89 2.24
268 269 0.315568 TTGCAACGGGCCACATTAAC 59.684 50.000 4.39 0.00 43.89 2.01
269 270 0.315568 GTTGCAACGGGCCACATTAA 59.684 50.000 14.90 0.00 43.89 1.40
270 271 0.823769 TGTTGCAACGGGCCACATTA 60.824 50.000 23.79 0.00 42.63 1.90
271 272 2.130426 TGTTGCAACGGGCCACATT 61.130 52.632 23.79 0.00 42.63 2.71
272 273 2.520500 TGTTGCAACGGGCCACAT 60.521 55.556 23.79 0.00 42.63 3.21
273 274 3.522731 GTGTTGCAACGGGCCACA 61.523 61.111 23.79 2.84 45.00 4.17
274 275 3.522731 TGTGTTGCAACGGGCCAC 61.523 61.111 23.79 16.20 43.89 5.01
275 276 3.522731 GTGTGTTGCAACGGGCCA 61.523 61.111 23.79 14.56 43.89 5.36
276 277 4.622456 CGTGTGTTGCAACGGGCC 62.622 66.667 23.79 12.28 43.89 5.80
277 278 4.622456 CCGTGTGTTGCAACGGGC 62.622 66.667 23.79 16.43 45.13 6.13
278 279 3.959975 CCCGTGTGTTGCAACGGG 61.960 66.667 27.40 27.40 46.81 5.28
279 280 4.622456 GCCCGTGTGTTGCAACGG 62.622 66.667 23.79 21.12 39.63 4.44
280 281 4.954680 CGCCCGTGTGTTGCAACG 62.955 66.667 23.79 13.15 0.00 4.10
281 282 3.404141 AACGCCCGTGTGTTGCAAC 62.404 57.895 22.83 22.83 43.33 4.17
282 283 3.114647 GAACGCCCGTGTGTTGCAA 62.115 57.895 0.36 0.00 44.90 4.08
283 284 3.578272 GAACGCCCGTGTGTTGCA 61.578 61.111 0.36 0.00 44.90 4.08
284 285 2.711185 GAAGAACGCCCGTGTGTTGC 62.711 60.000 0.36 0.00 44.90 4.17
285 286 1.157870 AGAAGAACGCCCGTGTGTTG 61.158 55.000 0.36 0.00 44.90 3.33
287 288 0.038526 CTAGAAGAACGCCCGTGTGT 60.039 55.000 0.00 0.00 36.58 3.72
288 289 0.038526 ACTAGAAGAACGCCCGTGTG 60.039 55.000 0.00 0.00 0.00 3.82
289 290 0.243095 GACTAGAAGAACGCCCGTGT 59.757 55.000 0.00 0.00 0.00 4.49
290 291 0.526662 AGACTAGAAGAACGCCCGTG 59.473 55.000 0.00 0.00 0.00 4.94
291 292 1.254954 AAGACTAGAAGAACGCCCGT 58.745 50.000 0.00 0.00 0.00 5.28
292 293 3.712091 ATAAGACTAGAAGAACGCCCG 57.288 47.619 0.00 0.00 0.00 6.13
293 294 5.278414 GGAGTATAAGACTAGAAGAACGCCC 60.278 48.000 0.00 0.00 39.06 6.13
294 295 5.532032 AGGAGTATAAGACTAGAAGAACGCC 59.468 44.000 0.00 0.00 39.06 5.68
295 296 6.622833 AGGAGTATAAGACTAGAAGAACGC 57.377 41.667 0.00 0.00 39.06 4.84
296 297 7.518689 CGGAAGGAGTATAAGACTAGAAGAACG 60.519 44.444 0.00 0.00 39.06 3.95
297 298 7.282901 ACGGAAGGAGTATAAGACTAGAAGAAC 59.717 40.741 0.00 0.00 39.06 3.01
298 299 7.344913 ACGGAAGGAGTATAAGACTAGAAGAA 58.655 38.462 0.00 0.00 39.06 2.52
299 300 6.897986 ACGGAAGGAGTATAAGACTAGAAGA 58.102 40.000 0.00 0.00 39.06 2.87
300 301 7.571080 AACGGAAGGAGTATAAGACTAGAAG 57.429 40.000 0.00 0.00 39.06 2.85
301 302 7.951347 AAACGGAAGGAGTATAAGACTAGAA 57.049 36.000 0.00 0.00 39.06 2.10
302 303 7.951347 AAAACGGAAGGAGTATAAGACTAGA 57.049 36.000 0.00 0.00 39.06 2.43
305 306 9.955102 ATTTAAAAACGGAAGGAGTATAAGACT 57.045 29.630 0.00 0.00 42.90 3.24
313 314 9.955102 AGACTTATATTTAAAAACGGAAGGAGT 57.045 29.630 0.00 0.00 0.00 3.85
345 346 9.485591 CGTATGTTGTAGTCCATTTAAAATGAC 57.514 33.333 10.81 10.81 0.00 3.06
346 347 8.670135 CCGTATGTTGTAGTCCATTTAAAATGA 58.330 33.333 0.00 0.00 0.00 2.57
347 348 8.670135 TCCGTATGTTGTAGTCCATTTAAAATG 58.330 33.333 0.00 0.00 0.00 2.32
348 349 8.795842 TCCGTATGTTGTAGTCCATTTAAAAT 57.204 30.769 0.00 0.00 0.00 1.82
349 350 8.670135 CATCCGTATGTTGTAGTCCATTTAAAA 58.330 33.333 0.00 0.00 0.00 1.52
350 351 7.825270 ACATCCGTATGTTGTAGTCCATTTAAA 59.175 33.333 0.00 0.00 44.07 1.52
351 352 7.332557 ACATCCGTATGTTGTAGTCCATTTAA 58.667 34.615 0.00 0.00 44.07 1.52
352 353 6.880484 ACATCCGTATGTTGTAGTCCATTTA 58.120 36.000 0.00 0.00 44.07 1.40
353 354 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
354 355 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
355 356 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
356 357 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
391 392 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
392 393 8.703743 AGAGCAAAATGAGTGAATCTATACTCT 58.296 33.333 0.00 0.00 42.86 3.24
393 394 8.763356 CAGAGCAAAATGAGTGAATCTATACTC 58.237 37.037 0.00 0.00 42.77 2.59
394 395 8.263640 ACAGAGCAAAATGAGTGAATCTATACT 58.736 33.333 0.00 0.00 0.00 2.12
395 396 8.430801 ACAGAGCAAAATGAGTGAATCTATAC 57.569 34.615 0.00 0.00 0.00 1.47
397 398 9.053840 CATACAGAGCAAAATGAGTGAATCTAT 57.946 33.333 0.00 0.00 0.00 1.98
398 399 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
399 400 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
400 401 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
401 402 8.565896 TTACATACAGAGCAAAATGAGTGAAT 57.434 30.769 0.00 0.00 0.00 2.57
402 403 7.977789 TTACATACAGAGCAAAATGAGTGAA 57.022 32.000 0.00 0.00 0.00 3.18
403 404 7.823799 TGATTACATACAGAGCAAAATGAGTGA 59.176 33.333 0.00 0.00 0.00 3.41
404 405 7.977904 TGATTACATACAGAGCAAAATGAGTG 58.022 34.615 0.00 0.00 0.00 3.51
405 406 8.743085 ATGATTACATACAGAGCAAAATGAGT 57.257 30.769 0.00 0.00 34.71 3.41
407 408 9.791820 CAAATGATTACATACAGAGCAAAATGA 57.208 29.630 0.00 0.00 35.50 2.57
408 409 9.577110 ACAAATGATTACATACAGAGCAAAATG 57.423 29.630 0.00 0.00 35.50 2.32
441 442 9.983804 CGTTCCCAAATATAAGTCTTTCTAAAC 57.016 33.333 0.00 0.00 0.00 2.01
442 443 9.169592 CCGTTCCCAAATATAAGTCTTTCTAAA 57.830 33.333 0.00 0.00 0.00 1.85
443 444 8.542080 TCCGTTCCCAAATATAAGTCTTTCTAA 58.458 33.333 0.00 0.00 0.00 2.10
444 445 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
445 446 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
446 447 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
447 448 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
448 449 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
449 450 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
450 451 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
451 452 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
452 453 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
453 454 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
454 455 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
455 456 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
456 457 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
457 458 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
458 459 1.203212 TCTACTCCCTCCGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
459 460 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
460 461 0.410663 TTCTACTCCCTCCGTTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
461 462 1.112950 CTTCTACTCCCTCCGTTCCC 58.887 60.000 0.00 0.00 0.00 3.97
462 463 2.140839 TCTTCTACTCCCTCCGTTCC 57.859 55.000 0.00 0.00 0.00 3.62
463 464 4.739587 AATTCTTCTACTCCCTCCGTTC 57.260 45.455 0.00 0.00 0.00 3.95
464 465 5.516984 TCTAATTCTTCTACTCCCTCCGTT 58.483 41.667 0.00 0.00 0.00 4.44
465 466 5.104024 TCTCTAATTCTTCTACTCCCTCCGT 60.104 44.000 0.00 0.00 0.00 4.69
466 467 5.378332 TCTCTAATTCTTCTACTCCCTCCG 58.622 45.833 0.00 0.00 0.00 4.63
467 468 6.489022 GTCTCTCTAATTCTTCTACTCCCTCC 59.511 46.154 0.00 0.00 0.00 4.30
468 469 6.489022 GGTCTCTCTAATTCTTCTACTCCCTC 59.511 46.154 0.00 0.00 0.00 4.30
469 470 6.068735 TGGTCTCTCTAATTCTTCTACTCCCT 60.069 42.308 0.00 0.00 0.00 4.20
470 471 6.130569 TGGTCTCTCTAATTCTTCTACTCCC 58.869 44.000 0.00 0.00 0.00 4.30
471 472 7.504238 TCATGGTCTCTCTAATTCTTCTACTCC 59.496 40.741 0.00 0.00 0.00 3.85
472 473 8.458573 TCATGGTCTCTCTAATTCTTCTACTC 57.541 38.462 0.00 0.00 0.00 2.59
473 474 8.278639 TCTCATGGTCTCTCTAATTCTTCTACT 58.721 37.037 0.00 0.00 0.00 2.57
474 475 8.458573 TCTCATGGTCTCTCTAATTCTTCTAC 57.541 38.462 0.00 0.00 0.00 2.59
475 476 8.498575 TCTCTCATGGTCTCTCTAATTCTTCTA 58.501 37.037 0.00 0.00 0.00 2.10
476 477 7.353525 TCTCTCATGGTCTCTCTAATTCTTCT 58.646 38.462 0.00 0.00 0.00 2.85
477 478 7.581213 TCTCTCATGGTCTCTCTAATTCTTC 57.419 40.000 0.00 0.00 0.00 2.87
488 489 4.121317 CTCATTGCTTCTCTCATGGTCTC 58.879 47.826 0.00 0.00 0.00 3.36
492 493 2.873472 GCTCTCATTGCTTCTCTCATGG 59.127 50.000 0.00 0.00 0.00 3.66
519 520 0.851495 CGTCATCGCTTCTCTCATGC 59.149 55.000 0.00 0.00 0.00 4.06
657 665 2.676471 GCACGTGGGGGATTTGCT 60.676 61.111 18.88 0.00 0.00 3.91
773 787 1.269726 GGTGTGGTGTGAAAAGCATGG 60.270 52.381 0.00 0.00 0.00 3.66
812 830 1.355796 CGTGGCGTGGCTTCGATTAA 61.356 55.000 6.82 0.00 0.00 1.40
813 831 1.807981 CGTGGCGTGGCTTCGATTA 60.808 57.895 6.82 0.00 0.00 1.75
825 843 4.988598 AAGACAGGTGGCGTGGCG 62.989 66.667 0.00 0.00 31.94 5.69
906 933 0.727398 CGCTCGATTGGTTTCCCTTC 59.273 55.000 0.00 0.00 0.00 3.46
933 963 0.823356 AATTGTGGTGGCTGCGAGTT 60.823 50.000 0.00 0.00 0.00 3.01
951 981 2.939640 GCAGGCAGGAGGTATTTCGAAA 60.940 50.000 13.91 13.91 0.00 3.46
959 989 3.402681 GCAGGCAGGCAGGAGGTA 61.403 66.667 0.00 0.00 0.00 3.08
982 1019 0.389948 ATTTCTTTCTCGGCGCTCGT 60.390 50.000 7.64 0.00 40.32 4.18
1230 1281 0.805614 CGAACTCGAGGAAGAGCTGA 59.194 55.000 18.41 0.00 41.77 4.26
1570 1621 4.899239 GCCGGTGGCCATCTCGAG 62.899 72.222 15.59 5.93 44.06 4.04
1683 4746 1.294780 CAGGAAGTGCTTCGCCTCT 59.705 57.895 5.93 0.00 40.37 3.69
1873 4951 0.602638 TCTGCAATGCCTTCGTCGTT 60.603 50.000 1.53 0.00 0.00 3.85
1881 4959 2.274760 GGGCTCTCTGCAATGCCT 59.725 61.111 1.53 0.00 44.36 4.75
1899 4980 1.804396 ATGCTCTGATCCTCTCGGCG 61.804 60.000 0.00 0.00 0.00 6.46
1951 5032 1.205893 GATCCAGCCTTCGTCTGAACT 59.794 52.381 0.00 0.00 33.54 3.01
1952 5033 1.646189 GATCCAGCCTTCGTCTGAAC 58.354 55.000 0.00 0.00 33.54 3.18
1953 5034 0.173481 CGATCCAGCCTTCGTCTGAA 59.827 55.000 0.00 0.00 33.54 3.02
1986 5067 4.742201 TCGCAAGCTCCACGGCTC 62.742 66.667 0.00 0.00 42.24 4.70
2031 5112 2.315386 AAACGCTTCTTCGCCCGAC 61.315 57.895 0.00 0.00 0.00 4.79
2065 5146 1.360551 CGTATGCAGACCCGGAGAG 59.639 63.158 0.73 0.00 0.00 3.20
2069 5150 2.202878 CCACGTATGCAGACCCGG 60.203 66.667 5.78 2.51 0.00 5.73
2072 5153 0.753262 ATCCTCCACGTATGCAGACC 59.247 55.000 5.78 0.00 0.00 3.85
2151 5238 0.250295 CACTGAAGAGGCCCGAACAA 60.250 55.000 0.00 0.00 0.00 2.83
2154 5241 1.671742 GTCACTGAAGAGGCCCGAA 59.328 57.895 0.00 0.00 0.00 4.30
2166 5253 2.305927 AGGAAATACAGGTGGGTCACTG 59.694 50.000 0.00 0.00 34.40 3.66
2192 5279 2.957402 TTCATCAAGGAAGGCACTGT 57.043 45.000 0.00 0.00 40.86 3.55
2227 5314 6.211664 AGTTATAGTTCGATGCAATAACGC 57.788 37.500 8.71 0.00 37.83 4.84
2263 5353 1.067635 GCGCACACAAGGGATTGAAAT 60.068 47.619 0.30 0.00 0.00 2.17
2265 5355 1.851021 CGCGCACACAAGGGATTGAA 61.851 55.000 8.75 0.00 0.00 2.69
2266 5356 2.324330 CGCGCACACAAGGGATTGA 61.324 57.895 8.75 0.00 0.00 2.57
2267 5357 2.176546 CGCGCACACAAGGGATTG 59.823 61.111 8.75 0.00 0.00 2.67
2268 5358 3.737172 GCGCGCACACAAGGGATT 61.737 61.111 29.10 0.00 0.00 3.01
2269 5359 2.796483 TAAGCGCGCACACAAGGGAT 62.796 55.000 35.10 4.83 0.00 3.85
2270 5360 2.997952 TTAAGCGCGCACACAAGGGA 62.998 55.000 35.10 5.10 0.00 4.20
2271 5361 1.922135 ATTAAGCGCGCACACAAGGG 61.922 55.000 35.10 0.00 0.00 3.95
2272 5362 0.109781 AATTAAGCGCGCACACAAGG 60.110 50.000 35.10 0.00 0.00 3.61
2273 5363 0.976963 CAATTAAGCGCGCACACAAG 59.023 50.000 35.10 14.94 0.00 3.16
2274 5364 0.309302 ACAATTAAGCGCGCACACAA 59.691 45.000 35.10 20.33 0.00 3.33
2275 5365 0.309302 AACAATTAAGCGCGCACACA 59.691 45.000 35.10 14.56 0.00 3.72
2276 5366 1.382088 GAAACAATTAAGCGCGCACAC 59.618 47.619 35.10 2.98 0.00 3.82
2277 5367 1.664588 GGAAACAATTAAGCGCGCACA 60.665 47.619 35.10 17.92 0.00 4.57
2359 5449 2.735772 CCCAGTGATCCTCCGTGGG 61.736 68.421 0.00 0.00 42.04 4.61
2363 5453 4.227134 CCGCCCAGTGATCCTCCG 62.227 72.222 0.00 0.00 0.00 4.63
2364 5454 3.866582 CCCGCCCAGTGATCCTCC 61.867 72.222 0.00 0.00 0.00 4.30
2365 5455 1.335132 TAACCCGCCCAGTGATCCTC 61.335 60.000 0.00 0.00 0.00 3.71
2366 5456 1.306654 TAACCCGCCCAGTGATCCT 60.307 57.895 0.00 0.00 0.00 3.24
2374 5465 3.012119 TCCATGCTAACCCGCCCA 61.012 61.111 0.00 0.00 0.00 5.36
2375 5466 1.692173 TACTCCATGCTAACCCGCCC 61.692 60.000 0.00 0.00 0.00 6.13
2377 5468 0.249911 CCTACTCCATGCTAACCCGC 60.250 60.000 0.00 0.00 0.00 6.13
2402 5493 7.067008 GGAGGAGAAGATAGACATATGCTACTC 59.933 44.444 1.58 4.68 0.00 2.59
2403 5494 6.889722 GGAGGAGAAGATAGACATATGCTACT 59.110 42.308 1.58 2.95 0.00 2.57
2404 5495 6.096282 GGGAGGAGAAGATAGACATATGCTAC 59.904 46.154 1.58 0.00 0.00 3.58
2405 5496 6.191315 GGGAGGAGAAGATAGACATATGCTA 58.809 44.000 1.58 6.02 0.00 3.49
2406 5497 5.022787 GGGAGGAGAAGATAGACATATGCT 58.977 45.833 1.58 3.84 0.00 3.79
2407 5498 4.142271 CGGGAGGAGAAGATAGACATATGC 60.142 50.000 1.58 0.00 0.00 3.14
2429 5520 0.531532 GCCCCATGAGATGAGACACG 60.532 60.000 0.00 0.00 0.00 4.49
2451 5546 1.479368 GCAACCCCTTTTGGCATGGA 61.479 55.000 0.00 0.00 38.58 3.41
2459 5554 4.322057 ACATCATCTAGCAACCCCTTTT 57.678 40.909 0.00 0.00 0.00 2.27
2465 5560 5.988561 CCTTCTCTAACATCATCTAGCAACC 59.011 44.000 0.00 0.00 0.00 3.77
2476 5571 2.158885 GGGAGTGGCCTTCTCTAACATC 60.159 54.545 21.40 8.97 36.66 3.06
2478 5573 1.276622 GGGAGTGGCCTTCTCTAACA 58.723 55.000 21.40 0.00 36.66 2.41
2480 5575 0.976073 CGGGGAGTGGCCTTCTCTAA 60.976 60.000 21.40 0.00 36.66 2.10
2499 5594 2.457366 AGGATCCAAGTGTGTCGAAC 57.543 50.000 15.82 0.00 0.00 3.95
2511 5606 6.777580 GCCAATAAAGGATAAAGAAGGATCCA 59.222 38.462 15.82 0.00 43.63 3.41
2514 5609 7.841222 ACAAGCCAATAAAGGATAAAGAAGGAT 59.159 33.333 0.00 0.00 0.00 3.24
2515 5610 7.122650 CACAAGCCAATAAAGGATAAAGAAGGA 59.877 37.037 0.00 0.00 0.00 3.36
2516 5611 7.260603 CACAAGCCAATAAAGGATAAAGAAGG 58.739 38.462 0.00 0.00 0.00 3.46
2518 5613 6.210385 TGCACAAGCCAATAAAGGATAAAGAA 59.790 34.615 0.00 0.00 41.13 2.52
2519 5614 5.714333 TGCACAAGCCAATAAAGGATAAAGA 59.286 36.000 0.00 0.00 41.13 2.52
2520 5615 5.807011 GTGCACAAGCCAATAAAGGATAAAG 59.193 40.000 13.17 0.00 41.13 1.85
2531 5626 1.251251 GGAGAAGTGCACAAGCCAAT 58.749 50.000 21.04 0.00 41.13 3.16
2537 5632 0.464036 ACTGACGGAGAAGTGCACAA 59.536 50.000 21.04 0.00 0.00 3.33
2547 5642 2.561419 TCCTAACTGGAAACTGACGGAG 59.439 50.000 0.00 0.00 42.94 4.63
2558 5653 3.018856 CAGCATTGCATTCCTAACTGGA 58.981 45.455 11.91 0.00 44.51 3.86
2603 5698 6.594159 ACTCATCGATCGGTTTATCTTGTTTT 59.406 34.615 16.41 0.00 0.00 2.43
2609 5704 4.082679 GCCTACTCATCGATCGGTTTATCT 60.083 45.833 16.41 0.00 0.00 1.98
2650 5745 6.697892 CACTAAGATAAGAGGCCGTTTAGAAG 59.302 42.308 0.00 0.36 0.00 2.85
2674 5769 4.082733 CGTTGACCAGATCTCTGTTAGTCA 60.083 45.833 11.39 11.39 42.27 3.41
2678 5773 2.496070 CCCGTTGACCAGATCTCTGTTA 59.504 50.000 6.46 0.00 42.27 2.41
2684 5779 0.252284 ACTCCCCGTTGACCAGATCT 60.252 55.000 0.00 0.00 0.00 2.75
2739 5834 1.134220 GCGATATGTCCCAACTCCCAA 60.134 52.381 0.00 0.00 0.00 4.12
2740 5835 0.468226 GCGATATGTCCCAACTCCCA 59.532 55.000 0.00 0.00 0.00 4.37
2741 5836 0.250338 GGCGATATGTCCCAACTCCC 60.250 60.000 0.00 0.00 0.00 4.30
2742 5837 0.468226 TGGCGATATGTCCCAACTCC 59.532 55.000 0.00 0.00 0.00 3.85
2743 5838 2.146342 CATGGCGATATGTCCCAACTC 58.854 52.381 4.28 0.00 31.37 3.01
2744 5839 1.815408 GCATGGCGATATGTCCCAACT 60.815 52.381 0.00 0.00 31.37 3.16
2745 5840 0.593128 GCATGGCGATATGTCCCAAC 59.407 55.000 0.00 0.00 31.37 3.77
2774 5873 3.390521 ACTTGGCCATCGCTCGGA 61.391 61.111 6.09 0.00 34.44 4.55
2805 5904 0.250338 AGAAGAACACCTGGGCGTTC 60.250 55.000 18.39 18.39 41.48 3.95
2826 5925 3.726607 CAACTTTCTCTCTGCACTGTCT 58.273 45.455 0.00 0.00 0.00 3.41
2830 5929 1.875576 CGGCAACTTTCTCTCTGCACT 60.876 52.381 0.00 0.00 36.50 4.40
2834 5933 2.731976 GTGTACGGCAACTTTCTCTCTG 59.268 50.000 0.00 0.00 0.00 3.35
2840 5939 2.030701 TCAAACGTGTACGGCAACTTTC 59.969 45.455 9.40 0.00 44.95 2.62
2841 5940 2.008329 TCAAACGTGTACGGCAACTTT 58.992 42.857 9.40 0.00 44.95 2.66
2891 5990 4.516698 GGATTTGAACAAGCTCACTCTCAA 59.483 41.667 0.00 0.00 0.00 3.02
2923 6022 2.731721 CGCGTGTCACGGTAAGCA 60.732 61.111 25.70 0.00 42.82 3.91
2944 6043 2.700722 AAGAGCTTTCCGAGGATTCC 57.299 50.000 0.00 0.00 0.00 3.01
2945 6044 2.605366 CGAAAGAGCTTTCCGAGGATTC 59.395 50.000 15.22 0.00 44.43 2.52
2948 6047 0.966920 ACGAAAGAGCTTTCCGAGGA 59.033 50.000 15.22 0.00 44.43 3.71
2949 6048 1.071605 CACGAAAGAGCTTTCCGAGG 58.928 55.000 15.22 5.92 44.43 4.63
2963 6062 2.218953 GTGGACACAAGTCTCACGAA 57.781 50.000 0.00 0.00 44.36 3.85
2964 6063 3.959478 GTGGACACAAGTCTCACGA 57.041 52.632 0.00 0.00 44.36 4.35
2970 6069 3.973657 TCTAGAAACGTGGACACAAGTC 58.026 45.455 3.12 0.00 44.21 3.01
2976 6075 4.130857 TGCAAAATCTAGAAACGTGGACA 58.869 39.130 0.00 0.00 0.00 4.02
2982 6081 4.935885 AGAGCTGCAAAATCTAGAAACG 57.064 40.909 1.02 0.00 0.00 3.60
3017 6116 2.345991 GTACGGCTGCCACTTGGA 59.654 61.111 20.29 0.00 37.39 3.53
3029 6128 0.933509 GCCGAGATAAGTGCGTACGG 60.934 60.000 18.39 0.00 41.44 4.02
3030 6129 0.029035 AGCCGAGATAAGTGCGTACG 59.971 55.000 11.84 11.84 0.00 3.67
3032 6131 0.666913 GGAGCCGAGATAAGTGCGTA 59.333 55.000 0.00 0.00 0.00 4.42
3034 6133 0.318275 GAGGAGCCGAGATAAGTGCG 60.318 60.000 0.00 0.00 0.00 5.34
3035 6134 1.036707 AGAGGAGCCGAGATAAGTGC 58.963 55.000 0.00 0.00 0.00 4.40
3036 6135 1.339610 CCAGAGGAGCCGAGATAAGTG 59.660 57.143 0.00 0.00 0.00 3.16
3037 6136 1.063567 ACCAGAGGAGCCGAGATAAGT 60.064 52.381 0.00 0.00 0.00 2.24
3038 6137 1.698506 ACCAGAGGAGCCGAGATAAG 58.301 55.000 0.00 0.00 0.00 1.73
3039 6138 2.032620 GAACCAGAGGAGCCGAGATAA 58.967 52.381 0.00 0.00 0.00 1.75
3040 6139 1.063942 TGAACCAGAGGAGCCGAGATA 60.064 52.381 0.00 0.00 0.00 1.98
3041 6140 0.324738 TGAACCAGAGGAGCCGAGAT 60.325 55.000 0.00 0.00 0.00 2.75
3042 6141 0.324738 ATGAACCAGAGGAGCCGAGA 60.325 55.000 0.00 0.00 0.00 4.04
3043 6142 0.103937 GATGAACCAGAGGAGCCGAG 59.896 60.000 0.00 0.00 0.00 4.63
3044 6143 1.330655 GGATGAACCAGAGGAGCCGA 61.331 60.000 0.00 0.00 38.79 5.54
3046 6145 1.144936 CGGATGAACCAGAGGAGCC 59.855 63.158 0.00 0.00 38.90 4.70
3047 6146 1.144936 CCGGATGAACCAGAGGAGC 59.855 63.158 0.00 0.00 38.90 4.70
3050 6149 2.084546 GAAAACCGGATGAACCAGAGG 58.915 52.381 9.46 0.00 38.90 3.69
3065 6167 2.510613 TCATGTCGGGGAAAGGAAAAC 58.489 47.619 0.00 0.00 0.00 2.43
3066 6168 2.961531 TCATGTCGGGGAAAGGAAAA 57.038 45.000 0.00 0.00 0.00 2.29
3071 6173 0.811281 GCCTTTCATGTCGGGGAAAG 59.189 55.000 7.06 7.06 45.97 2.62
3072 6174 0.610785 GGCCTTTCATGTCGGGGAAA 60.611 55.000 0.00 0.00 0.00 3.13
3073 6175 1.001393 GGCCTTTCATGTCGGGGAA 60.001 57.895 0.00 0.00 0.00 3.97
3074 6176 1.784301 TTGGCCTTTCATGTCGGGGA 61.784 55.000 3.32 0.00 0.00 4.81
3075 6177 0.897863 TTTGGCCTTTCATGTCGGGG 60.898 55.000 3.32 0.00 0.00 5.73
3076 6178 0.965439 TTTTGGCCTTTCATGTCGGG 59.035 50.000 3.32 0.00 0.00 5.14
3077 6179 1.067635 CCTTTTGGCCTTTCATGTCGG 60.068 52.381 3.32 0.00 0.00 4.79
3078 6180 1.613437 ACCTTTTGGCCTTTCATGTCG 59.387 47.619 3.32 0.00 45.59 4.35
3080 6182 2.102925 CACACCTTTTGGCCTTTCATGT 59.897 45.455 3.32 0.00 45.59 3.21
3081 6183 2.758009 CACACCTTTTGGCCTTTCATG 58.242 47.619 3.32 0.00 45.59 3.07
3082 6184 1.070601 GCACACCTTTTGGCCTTTCAT 59.929 47.619 3.32 0.00 45.59 2.57
3084 6186 0.249868 GGCACACCTTTTGGCCTTTC 60.250 55.000 3.32 0.00 45.59 2.62
3085 6187 1.829456 GGCACACCTTTTGGCCTTT 59.171 52.632 3.32 0.00 45.59 3.11
3086 6188 2.498056 CGGCACACCTTTTGGCCTT 61.498 57.895 3.32 0.00 45.59 4.35
3087 6189 2.912025 CGGCACACCTTTTGGCCT 60.912 61.111 3.32 0.00 45.59 5.19
3088 6190 3.223589 ACGGCACACCTTTTGGCC 61.224 61.111 0.00 0.00 45.59 5.36
3089 6191 2.010582 TTCACGGCACACCTTTTGGC 62.011 55.000 0.00 0.00 45.59 4.52
3091 6193 0.594796 GCTTCACGGCACACCTTTTG 60.595 55.000 0.00 0.00 0.00 2.44
3092 6194 1.733526 GCTTCACGGCACACCTTTT 59.266 52.632 0.00 0.00 0.00 2.27
3093 6195 2.193536 GGCTTCACGGCACACCTTT 61.194 57.895 0.00 0.00 38.25 3.11
3094 6196 2.594592 GGCTTCACGGCACACCTT 60.595 61.111 0.00 0.00 38.25 3.50
3095 6197 4.643387 GGGCTTCACGGCACACCT 62.643 66.667 0.00 0.00 40.61 4.00
3096 6198 2.741486 TTAGGGCTTCACGGCACACC 62.741 60.000 0.00 0.00 38.23 4.16
3097 6199 0.887387 TTTAGGGCTTCACGGCACAC 60.887 55.000 0.00 0.00 38.23 3.82
3098 6200 0.179015 TTTTAGGGCTTCACGGCACA 60.179 50.000 0.00 0.00 38.23 4.57
3099 6201 1.135402 CATTTTAGGGCTTCACGGCAC 60.135 52.381 0.00 0.00 40.61 5.01
3100 6202 1.173043 CATTTTAGGGCTTCACGGCA 58.827 50.000 0.00 0.00 40.61 5.69
3101 6203 1.173913 ACATTTTAGGGCTTCACGGC 58.826 50.000 0.00 0.00 37.49 5.68
3102 6204 3.934457 AAACATTTTAGGGCTTCACGG 57.066 42.857 0.00 0.00 0.00 4.94
3123 6225 5.974158 TCACGATTCGCAAAATGAAGAAAAA 59.026 32.000 5.86 0.00 0.00 1.94
3124 6226 5.515184 TCACGATTCGCAAAATGAAGAAAA 58.485 33.333 5.86 0.00 0.00 2.29
3125 6227 5.102020 TCACGATTCGCAAAATGAAGAAA 57.898 34.783 5.86 0.00 0.00 2.52
3126 6228 4.740741 TCACGATTCGCAAAATGAAGAA 57.259 36.364 5.86 0.00 0.00 2.52
3127 6229 4.740741 TTCACGATTCGCAAAATGAAGA 57.259 36.364 5.86 0.00 0.00 2.87
3128 6230 5.796935 AGATTTCACGATTCGCAAAATGAAG 59.203 36.000 18.37 0.00 29.19 3.02
3131 6233 4.853196 ACAGATTTCACGATTCGCAAAATG 59.147 37.500 18.37 15.36 29.19 2.32
3138 6240 7.216317 GGAAACAAATACAGATTTCACGATTCG 59.784 37.037 4.14 4.14 32.73 3.34
3142 6244 5.615984 GCGGAAACAAATACAGATTTCACGA 60.616 40.000 0.00 0.00 32.73 4.35
3164 6266 0.030638 CTTTTGGAACCCAGTGTGCG 59.969 55.000 0.00 0.00 33.81 5.34
3168 6274 1.039856 CACCCTTTTGGAACCCAGTG 58.960 55.000 0.00 0.00 44.07 3.66
3176 6282 1.243902 GACGAATGCACCCTTTTGGA 58.756 50.000 0.00 0.00 44.07 3.53
3178 6284 2.598589 CATGACGAATGCACCCTTTTG 58.401 47.619 0.00 0.00 0.00 2.44
3188 6294 7.201376 CCAAATTCTTTTACAGCATGACGAATG 60.201 37.037 0.00 0.00 39.69 2.67
3196 6302 4.485163 GCGACCAAATTCTTTTACAGCAT 58.515 39.130 0.00 0.00 0.00 3.79
3201 6307 3.817148 TCGGCGACCAAATTCTTTTAC 57.183 42.857 4.99 0.00 0.00 2.01
3202 6308 4.936411 TGTATCGGCGACCAAATTCTTTTA 59.064 37.500 13.76 0.00 0.00 1.52
3203 6309 3.754323 TGTATCGGCGACCAAATTCTTTT 59.246 39.130 13.76 0.00 0.00 2.27
3210 6316 0.107897 ATGCTGTATCGGCGACCAAA 60.108 50.000 13.76 3.89 38.82 3.28
3220 6326 7.565323 AAAAAGAAGATCCAGATGCTGTATC 57.435 36.000 0.00 0.00 35.97 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.