>input_sequence_55381
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------------------------------------------------------------------------------AT
GGAGGCGGCGGTCGGCGGCAGCTGGACACGCGTCCGCACGCTCGGCCGCGGCGCGTCCGGCGCCGTGGTGTCCC---TCG
CCGCCGACGACCTCTC---GGGCGCGCTCTTCGCCGTCAAGTCGGCGCCCGCGGCCGCCGCG---GACCAGCTCCGGCGC
GAGGGCGACATCCTGTCCGGCCTCAGCTCGCCGCACGTCCTGCCCTGCCTCGGCTTCCGCGCC---GCCGCCGGCGAGTG
TCAGCTCTTCCTCGAGTTCGCGCCCGGCGGCTCGGTCGCCGTCGTCGCCGCGAGGAGCGGCGGCCGGCTCGAGGAGTGCG
CCGTCCGGGCGTACGCCGCCGACGTGGCCAGAGGCCTGGCGTACCTCCACGGGAGGTCCCTCGTCCACGGGGACGTGAAG
GGGAGGAACGTCGTGGTCGGCGCCGACGGCCGGGCGAAGATCGCGGACTTCGGGTGCGCGAGGGCGGTGGGCTCTTTCGA
TCGGCCCATCGGGGGCACGCCCGCGTTCATGGCGCCGGAGGTGGCGCGGGGCGAGGAGCAGGGCCCCGCGGCCGACGTCT
GGGCGCTGGGCTGCACCGTCCTCGAGATGGCCACCGGCCGCGCCCCGTGGAGCGACATGGACGACATCC-----------
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-----------------------------------------TCGCGGCGATGCACCGGATCGGCTACACGGACGCCGTGC
CGGAGGTGCCCGCGTGGCTGTCCGCAGAGGCGAAGCACTTCCTGGCCATGTGCTTCGCGAGAGACGCCCGCGACCGGTGC
ACGGCGGCGCAGCTGCTGGAGCACCCGTTCCTGGCATCCGCCGGCTGCGGCGTGAAGC------------CGGAGGAGGC
GGCGACCAAATGGGTGTCCCCCAAGAGCACGCTGGACGCGGCGCTCTGGGAG---TCCGACACCGAAGACAACGACGAAG
GCATTGCAGAGAGCC---CCGCCGAGAGGATCAGAGCATTGGCATCCCCTTCCTCGGCATTCCCGGACTGGAGTTCAGAC
GAAGGCTGGATCGACGTGCTCAACGAGAGCCGTGGAGCTTGCGATGCCGCCGCCGAGGACGAGCGCGCATCGTCGGGCGA
AGAAGCGTTTGCAACGGAGGCCGAACTCTCCGGGTCTGCATACGTGGAGGATACCGATCGTGTTGGCACTGTAGGATTAA
CTACTCTCTCAG------CTGAGCAGCAGAATGACTTTTGTTCGGGCCTCTTCAGTGACCCACCTGTATTTCCTGTGAAC
AGTGCCTTCCTTGATGAAAGTGAAATAACAGAAGCGTTATTGCATCGAACTAT---AACTATTACTGTCCCCATTTCAAT
CCCTTGTGTGCGCGCTTAA-------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G256500
GGTGGCAAATATAATACACATAATCCATATTGTTATGCACTAGCGCGTGTGCGTGTGAAATAGATGGATTATGATCTCGT
ACCCAATAAGATAGATATGTGTGTGTGTGTTAGAGAGAGAGAGGGGGGAGAGGGGGAGAGAGAGTGAGGAGGAGGGAGGG
AGAGGGTGTGTGTGTGAGAATTTGATGGTAAAAAAGGTCGTCACTGTCACTTAATATGTATGAGAATATTAAATGTAATA
TTAACATAATTAATATTGAACTTTTAAAGTTAATGTGGCCCGTTGCAACACACGGGCGTTCTTCTAGTCTTATACTCCTT
CCGTTTTTAAATATAAGTCTTTTTAGTCATTTTAAATGGACTACAACATACGGATGTATGTAGACATATTTTAGAGTATA
GATTCACTCATTTTGCTCTGTATGTAATCATTTGTTAAAATGTTTAGAAAGACTTATATTTGGGAACGGAGGGAGTAGAA
GAATTAGAGAGACCATGAGAGAAGCAATGAGAGCATCGAGC-----ATGAGAGAAGCGATGACGCGGCTGAAGAAGCTTC
GCTCGAT--CGCGCGAGAGAGACAGGAGCTCTCCCAGCCTCCTGCGGTCCTGCCCAATTTGACGCCGTTTTCCATCTGCT
CACCCCGCTCCCGGAACCCAATTCAGCAAATCCCCCACGTGCAGCGAAATGAGGCCACGTTGACGGTGCCTCCGACCCGC
CCGGCCCACGCGACAGTGTCCCGTCAACGCCCACCCTCCCGTTTCCTCGCGCAGCTC------GGCCCATGCTTTTCACA
CCACACCG----CGGAATTGGTACGGATCTTAATCGAAGCCACGCCACGCCAC-----CTGTCTTTTCCGGCCCCGCCAT
ATATCATC----CCACGCCGAGCCCGAGCTCTCCACTTCAAATCAAATCGCAGAAGGGAAACCAATCGAGCGA---GCCA
ACAACTCGCAGCCACCACAATTTCGAAATACCTCCTGC-------CTGCCTGCAAGAAACGAGCGCCGAGAAAG--AAAT
GGAGGCGGCGGTCGGCGGCAGCTGGACACGCGTCCGCACGCTCGGCCGCGGCGCGTCCGGCGCCGTGGTGTCCC---TCG
CCGCCGACGACCTCTC---GGGCGCGCTCTTCGCCGTCAAGTCGGCGCCCGCGGCCGCCGCG---GACCAGCTCCGGCGC
GAGGGCGACATCCTGTCCGGCCTCAGCTCGCCGCACGTCCTGCCCTGCCTCGGCTTCCGCGCC---GCCGCCGGCGAGTG
TCAGCTCTTCCTCGAGTTCGCGCCCGGCGGCTCGGTCGCCGTCGTCGCCGCGAGGAGCGGCGGCCGGCTCGAGGAGTGCG
CCGTCCGGGCGTACGCCGCCGACGTGGCCAGAGGCCTGGCGTACCTCCACGGGAGGTCCCTCGTCCACGGGGACGTGAAG
GGGAGGAACGTCGTGGTCGGCGCCGACGGCCGGGCGAAGATCGCGGACTTCGGGTGCGCGAGGGCGGTGGGCTCTTTCGA
TCGGCCCATCGGGGGCACGCCCGCGTTCATGGCGCCGGAGGTGGCGCGGGGCGAGGAGCAGGGCCCCGCGGCCGACGTCT
GGGCGCTGGGCTGCACCGTCCTCGAGATGGCCACCGGCCGCGCCCCGTGGAGCGACATGGACGACATCC-----------
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-----------------------------------------TCGCGGCGATGCACCGGATCGGCTACACGGACGCCGTGC
CGGAGGTGCCCGCGTGGCTGTCCGCAGAGGCGAAGCACTTCCTGGCCATGTGCTTCGCGAGAGACGCCCGCGACCGGTGC
ACGGCGGCGCAGCTGCTGGAGCACCCGTTCCTGGCATCCGCCGGCTGCGGCGTGAAGC------------CGGAGGAGGC
GGCGACCAAATGGGTGTCCCCCAAGAGCACGCTGGACGCGGCGCTCTGGGAG---TCCGACACCGAAGACAACGACGAAG
GCATTGCAGAGAGCC---CCGCCGAGAGGATCAGAGCATTGGCATCCCCTTCCTCGGCATTCCCGGACTGGAGTTCAGAC
GAAGGCTGGATCGACGTGCTCAACGAGAGCCGTGGAGCTTGCGATGCCGCCGCCGAGGACGAGCGCGCATCGTCGGGCGA
AGAAGCGTTTGCAACGGAGGCCGAACTCTCCGGGTCTGCATACGTGGAGGATACCGATCGTGTTGGCACTGTAGGATTAA
CTACTCTCTCAG------CTGAGCAGCAGAATGACTTTTGTTCGGGCCTCTTCAGTGACCCACCTGTATTTCCTGTGAAC
AGTGCCTTCCTTGATGAAAGTGAAATAACAGAAGCGTTATTGCATCGAACTAT---AACTATTACTGTCCCCATTTCAAT
CCCTTGTGTGCGCGCTTAATTGTTTCCGCCGAACTATCGTGGCGTGACGATTCCAGAAACGTTTGCTCTAGACTAGAGAT
ATGCATGACCCACGGA-GGATCACTGGGCGGGTTAGCATGGAGTAGGAGTAGGAGTAGCATATGTCTATCTTCTCCTCCC
GTGTCTCATCTCATGGGG----CCATCCATGCCAAAAGGGGTTGCTAGATGATGTTAGAGAAGGCCACTCCCCGTTCGAC
ACACTTGGATCCTTCTTTATCCTTTATTGGCTTGTGCACTTCTCCGTCAGTTTCCAGTTAGGAATGCAATGCTGAGCAGC
AAAGAGAAGACCATAATAAAACAAGATAAACCGATCGATGAGTAGGCCTGATTAGACCGCACTTCTTCTAAACGGCCTCT
TATCTTAGTGACTAACAGAGATCTGGTCAACGGGGAGTCTTGTGACACTGGCTGAAGCTACAAGACCAAAGGCTTGGGAG
TTGGGACATATCGCCATGC----GGCCGCGTCTCCGAGCGATGGCCAAGTGGCGGCGTGCTCCGAACGCCCAGGTGTTCT
TCTCAGACAGTGCAGAGAGAAAGTTGCCGTACACGTTTGATGTTTGCCACACGTGGAAGTAGGGATGGGTTGAGAGTGAG
CTTGTTCAAATCCTCAAGGTTTGCTTACCGTGACACGCGTCCGGAATCCTCGGAAAGCTCTTTCGTGAGACTTGTGTCCA
CGTTTCTAGATTTTGCAGCTCTTGCAGCTTGCTTGTCCAAGTGGCAGCCGTACGCACTTATCTCGGCTC---CTCTGGTT
CATCCGGTTTTCCTTTCCCCGACATGAAAGGCCAAAAGGTGTGCCGTGAAGCCCTAAAATGTTTTTTTTCTTCATTTTGC
GAATCGTGAAATCTGTATTTGTTTCC----GCACACTGGGTTCCAAAAGGGTGCATTCGTCATGCTGTAAAAGAATTTGG
TCGCCGATACAGCATCTGGATCTTCTT----TTTTCAACAACCTTGCTGTGAGCCAACTACCTTGGCATTTCTGCTGGC
>chr3A_473
GAGAG---------------------------------------------------------------------------
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------------------------------------------------------------------------------AA
GAATTAGAAAGAGCATGAGAGAAGCAATGAGAGCATCGACCATGAGATGAGAGAAGCGATGACGCGGCTGAAGAAGCTTC
GCTCGAT--CGCGCGAGAGAGACAGGACCTCTCCCTGCCTCCTGC--------CCAACTTGACGCCGTTTTCCATCTGCT
CTGCCCGCTCCCGGAACCCAATTCGGCAAATCCCCCACGTGCAGCGAAATGAGGCCACGTTGACGGTGCCTCCGACCCGC
CCGGCCCACGCGACAGTGTCCCGTCAACGCCCACCCTCCCGTTTCCTCGCGCAGCTCCCGCTGGGCACATGCTTTTCACA
CCACGCCGCGGCCGGAATTGGTACGGATCGAAATCGAA-----GCCACGCCAC-----CTGTCTTTTCCGGCCCCGCCAT
ATATACACACACACACCCCGACCCCGAG--CTCCACTTCAAATCAAATCGCACAAGGGAAACCAATCGAGCGACGAGCCA
GCTACTCGCAGCCACCACAAATTCGAAACACCT------------------GCAAGAACCGAGCGCCGAGAAAAGAAAAT
GGAGACAGCGGTCGGCGGCAGCTGGACACGCGTCCGCACGCTCGGCCGCGGCGCGTCCGGCGCCGTCGTGTCCC---TCG
CCGCCGACGACCTCTC---GGGCGCGCTCTTCGCCGTCAAGTCGGCGCCCGCGGCCGCCGCG---GACCAGCTCCGGCGC
GAGGGCCGCATCCTGTCCGGCCTCTGCTCGCCGCACGTCCTGCCCTGCCTCGGCTTCCGCGCC---GCCGCCGGCGAGTG
CCAGCTCTTCCTCGAGTTCGCGCCGGGCGGCTCCGTTGCCGACGTCGCCGCGAGGAGCGGGGGCCGGCTCGAGGAGCGCG
CCGTCCGGGCGTACGCCGCCGACGTGGCCAGAGGCCTGGCGTACCTCCACGGGAGGTCCCTCGTCCACGGCGACGTGAAG
GCGAGGAACGTCGTGGTCGGCGCCGACGGCCGCGCGAAGATCGCGGACTTCGGGTGCGCGAGGGCGGTGGGCTCTTCCGA
CCGGCCCGTCGGGGGCACGCCGGCGTTCATGGCGCCGGAGGTGGCGCGGGGCGAGGAGCAGGGCCCCGCGGCCGACGTCT
GGGCGCTGGGCTGCACCGTCGTCGAGATGGCCACCGGCCGCGCCCCGTGGAGCGACATGGACGACGTCC-----------
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-----------------------------------------TCGCCGCGATGCACCGGATCGGCTACACGGACGCCGTGC
CGGAGGTGCCGGCGTGGCTGTCCGCGGAGGCGAAGCGCTTCCTGGCCATGTGCTTCGCGAGAGACGCCCGCGACCGGTGC
ACGGCGGCGCAGCTGCTGGAGCACCCGTTCCTGGCATCGGCCGGTTGCGGCGTGAAGC------------CCGAGGAGGC
GGCGGCCAAATGGGTGTCCCCCAAGAGCACGCTGGACGCGGCGCTCTGGGAGGAGTCCGACACCGAAGAGGACGACGACG
GCATGTCAGAGAGCCCCGCTGCCGAGAGGATCAGAGCATTGGCATCCCCTCCGTCGGCATTCCCGGACTGGGACTCAGAC
GAAGGCTGGATCGACGTGCTCAGCGACAGCCGTGAAGCTCGCGATGCCGCCGCCGAGGACGAGCGCGCATCATCGGGCGA
AGTAGCTTTCGAAGCGGAGGCCGAATTCTTCGTGTCTGCATACGTGGAGGATGCCGATCGTGTTGGCACTGTAGGATTAA
CTGCTCTCTCAGTCTCAGCTGAGCAGCAGAATGACTTCTGCTCGGGCCTCTTGAGTGACCCACCTGTATTTCCTGTGAGC
AGTGCCTTCCTTGATGAAAGTGGAATAACAGAATCGTTATTGCATCGAACTAGTACAAGTATTACTGTCCCCTTCC----
-------GTGCGCGCTTAATTACTTCCGCCGAACTATCGTGGCGTGACGATTCCAGAAACGTTTGCTCTAGACTAGAGAT
ATGCACGAGCCATTTGGGGATCACCTGTCGGGTTAGCATGGAGTAGGAGTAG------CATATGTCTATCTTCTCCTCCG
GTGTCTCATCTCATGGGGCCGGCCACCCATGCCTAAAGGAGTTGCTAGATCACGCTAGAGAAGGCCACTCCCCATTCGAC
ACACTCGGGATCA--TTTATCCTTTCTTGGCCTGTGCACTTATCCGTCAGTTCCCAGTTAGGAATGCAATGCTGAGCAGC
AAAAAGCAGACCATAAT-AAACAGGATAAACCGATCGATGAGTAGGCCTGATTAGACCGCACTTGTTCTAAACGGCCTCT
TATCTTAGCGACGAACAGTGATCTGGTCAACGGGGAGTCTTGTGACACTGGCTGAAGCTATAAGACCAAAGGC-------
TTGGGACATATCGCCATGCACGCGGCCGCGTCCCCGAGCGATGGCCAAGTGGCGCCGTGCTCCCAACGCCCAGGTGTTCT
TCTCGGACGGTGTAGAGA--AAGTTGCCGTACACGTTTGATGTTTGCCACACGTGGAAGTAGGGATGGGATGAGAGTGAG
CTTGTTCAAATCCTCAAGGTTAGCTTACCGTGACACGCGTCCACAACTCTCGGAAAGCTCTGCCGTGAAACTTGCGTCCA
TGTTTCTAGATT---------TTGCAGCTTGCTTGCCCAAGTGGCAGGAGGAGCGTGCATCTACTACTAGTACTCTGGTT
CATCCGCGTTTTTCGAAAATGTTGT---------------------------------------------TTTATTTTGT
GAACCGTGAAATCTGTATTTGTTTCTGCATGCATACTGGGTCCGAGAAGGGTGAATTCGTCGTGCTTCCAAAGAAATTGG
TCGCCAATACAGCATCTGGATCTTCTTCTTTTTTTCAACAACCTTGCTGTGAGCCAACTACCTTGGCATTTCTGCTGG-
>chr3B_473
GAGAG---------------------------------------------------------------------------
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------------------------------------------------------------------------------AA
GAATTACAAAGAGCATGAGAGAAGCAATGAGAGCATCGACTAT---ATGAGAGAAGCGATGACGCGGCTGAAGAAGCTTC
GCTCGATCGCGCGAGAGAGAGACAGGATCTCTCCCAGCCTCCTGCGGTCCTGCCCAATTTGACGCCGTTTTCCATCTG--
------------GGAACCCAATTCGGCAAAGCCCCCACGTGCATCGAAATGAAGCCACGTTGACTAGGCCTCCGACTCGC
CCGGCCCACGCGACAGTGTCCCGTCAACGCCCACCCTCCCGTTTCCTCGCGCA------GCTGGGCACATGCTTTTCACA
CCACACCG----CGGAATTGGTACGGATCGAAATCGAA-----GCCACGCCACGCCACCTGTATTTTCCGGCCCCGCCAT
ATATACATCCATCCACGCCGAGCCCGAGCTC--CACTTCAAATCAAATCGCACAAGGGAAACCAATCGAGCGAGCA---A
ACTACTCGCAGCCACCACAAATTCGAAACACCTCCTGCCTCTTGCCTGCCTGCAGGAACCGAGA------AAAG--AAAT
GGAGGCGGCGGTCGGCGGCAGCTGGACACGCGTCCGCACGCTCGGCCGCGGCGCGTCCGGCGCCGTGGTGTCCC---TCG
CCGCCGACGACCTCTT---GGGCGCGCTCTTCGCCGTCAAGTCGGCGCCCGCTGCCGCCGCG---GACCAGCTCCGGCGC
GAGGGCGACATCCTGTCCGGCCTCAGCTCGCCGCACGTCTTGCCCTGCCTCGGCTTCCGCGCC---GCCGCCGGCGAGTG
CCAGCTCTTCCTCGAGTTCGCGCCGGGCGGCTCCGTCGCCGACGTCGCCGAGAGGTGCGGCGGCCGGCTCGAGGAGGGCG
CTGTCCGGGCGTACGCCGCCGATGTGGCTAGAGGCCTGGCGTACCTCCACGGGAGGTCCCTCGTCCACGGGGACGTGAAG
GCGAGAAACGTCGTGGTCGGCGCCGACGGCCGAGCGAAGATCGCGGACTTCGTGTGTGCGAGGGCGGTGGGTTCTTCCGA
TCGGCCCATCGGGGGCACGCCGGCGTTCATGGCGCCGGAGGTGGCACGGGGCGAGGAGCAGGGCCCCGCGGCCGACGTCT
GGGCGCTGGGCTGCACCGTCGTCGAGATGGCCACCGGCCGCGCCCCGTGGAGCGACATGGACGACGTCC-----------
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-----------------------------------------TCGCGGCGATGCACCGGATCGGCTACACGGACGCCGTGC
CGGAGGTGCCGGCGTGGCTGTCCGCGGAGGCGAAGCACTTCCTCGCCCTGTGCTTCGCGAGAGACGCCCGCGACCGGTGC
AC------------------------------------------------------------------------------
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>chr1A_1007
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----GCGGCTGGCCGCGGCGGCTGAAG-CGCGTCCGCACGCTCGGCCGCGGCGCGTCCGGCGCCGTCGTGTCGCTCTTCG
CCGCCGGCGACGGCGACGGCGACGAGCTGCTCGCGGTCAAGTCGGCCGGGGCCGCCGACGCGCAGGCGCTGCTGCGGCGG
GAGGGCGGCATCCTGGCCTCCCTCTGCTCGCCCTACGTGCTCCCCTGCCTCGGCTCCCGCGCCGCGGCCGGCGGGGAATA
CCAGCTGTTTCTCGAGTTCGCGCCCGGCGGCTCGCTCGCGGACGAGGTGGAGCGGAACGGCGGCTGCCTCGAGGAAGGCG
CCGTCCGCGCCTACGCGGCCGACGTGGCCAGGGGCCTCGCGTACCTCCACGGGGAGTCCATGGTCCACGGCGACGTCAAG
GGCCGGAACGTGGTCATCGGCGCCGACGGCTGGGCCAAGCTCGCGGACTTCGGGTGCGCCCGGAGCGTGGGCTCGGCGG-
--GCCCGATAGGGGGCACGCCGGCGTTCATGGCGCCCGAGGTGGCGCGCGGGGAGGAGCAGGGCCCGGCCGCCGACGTCT
GGGCCCTGGGCTGCACTGTCATCGAGATGGCCACCGGCCGCGCCCCCTGGAGCCACATGGACGACGTGT-----------
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-----------------------------------------TCGCGGCGGTGCGCCTGATCGGGTACACGGACGCCGTGC
CGGAGGCGCCCGAGCGGCTGTCGTCGGAGGCCAAGGACTTCCTTGATAAGTGCCTCAGGCGGTGCGCCTGCGAGCGGTGG
ACGGCGGAGCAGCTGCTGGAGCACCCGTTCCTGGCGTTCGCCGGCTGCGGTGCGGACGTCGAG------TCGGCTGAGCT
GAAGGGCAAGTGGGTTTCCCCCAAGAGCACATTGGACGCCGCAATGTGGGAA---TCCGACGCCGACGAGGATGAGAACG
TGCCCGATGATGACA---CGGCCGAGAGGATGAGGGCATTGGCGGCCTTCTGCTCGGTCTTGCCTGACTGGGAGTCCGAC
GACGGCTGGATCGATGTACT------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr1B_1010
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-------GCGGCCGGCGGCGGCTGACG-CGCGTCCGCACGCTCGGCCGGGGCGCGTCCGGCGCCGTCGTGTCGCTCTTCG
CGGC------CGGCGACGGCGACGAGCTGCTCGCGGTCAAGTCGGCCGGAGCCGCCGACGCGCAGGCGCTGCTGCGGCGG
GAGGGCGGCATCCTGGCCTCCCTCTGCTCGCCCTACGTGCTCCCCTGCCTCGGCTCCCGCGCCGCGGCCGGCGGGGAGTA
CCAGCTCTTCCTCGAGTTCGCGCCCGGCGGCTCGCTCGCCGACGAGGTCGAGCGCAACGGCGGCTGCCTCGAGGAAGGCG
CCGTCCGCGCCTACGCGGCCGACGTGGCCAGGGGCCTCGCGTACCTCCACGGGGAGTCCATGGTCCACGGCGACGTCAAG
GGCCGGAACGTGGTCATCGGCGCCGACGGCTGGGCCAAGCTCGCGGACTTCGGGTGCGCCCGGAGCGTGGGCTCGGCGG-
--GGCCGATTGGGGGCACGCCGGCGTTCATGGCGCCTGAGGTGGTGCGAGGGGAGGAGCAGGGCCCGGCCGCCGACGTCT
GGGCCCTGGGCTGCACCGTCATCGAGATGGCCACCGGCCGCGCCCCCTGGAGCCACATGGACGACGTGG-----------
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-----------------------------------------TCGCGGCGGTGCGCCTCATCGGGTACACGGACGCCGTGC
CGGAGGCGCCCGAGCGCCTGTCGTCGGAGGCCAAGGACTTCCTTGACAAGTGCCTCAGGCGGTGCGCCGGCGAGCGGTGG
ACCGCGGAGCAGCTGCTGGAGCACCCGTTCTTGGCGTTCGCCGGCTGTGGCGCCGACGTCGAG------TCGGCTGAGCT
GAAGGGCAAGTGGGTCTCCCCCAAGAGCACATTGGACGCTGCAATGTGGGAA---TCTGACGCCGACGAGGATGAGAACG
TGCCCGATGATGACA---CGGCCGAGAGGATGAAGGCATTGGCGGCCTTCTGCTCGGTCTTGCCGGACTGGGAGTCCGAC
GACGGCTGGATCGATGT---------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr1D_1017
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--------------GCGGCGGCTGACG-CGCGTCCGCACGCTCGGCCGGGGCGCGTCCGGCGCCGTCGTGTCGCTCTTCG
CGGCCGGCGACGGCGACGGCGACGAGCTGCTCGCGGTCAAGTCGGCCGGGGCCGCCGACGCGCAGGCGCTGCTGCGGCGG
GAGGGCGGCATCCTGGCCTCGCTCTGCTCCCCGTACGTGCTCCCCTGCCTCGGCTCTCGGTCCAAGGCCGGCGGGGAGTA
CCAGCTCTTCCTCGAGTTCGCGCCTGGCGGCTCGCTCGCCGACGAGGTGGAGCGGAACGGCGGCTGCCTCGAGGAAGGCG
CCGTCCGCGCCTACGCGGCCGACGTGGCCAGGGGCCTCGCGTACCTGCACGGGGAGTCCATGGTCCACGGCGACGTCAAG
GGCCGGAACGTGGTGATCGGCGCCGACGGCTGGGCCAAGCTCGCGGACTTTGGGTGCGCCCGGAGCGTGGGCTCGGCGG-
--GGCCGATTGGGGGCACCCCGGCGTTCATGGCGCCGGAGGTGGCGCGGGGGGAGGAGCAGGGCCCGGCCGCCGACGTCT
GGGCCCTGGGCTGCACCGTCATCGAGATGGCCACCGGCCGCGCCCCCTGGAGCCACATGGACGACGTGG-----------
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-----------------------------------------TCGCGGCGGTGCGCCTGATCGGGTACACGGACGCCGTGC
CGGAGGCGCCCGAGCGGCTGTCGTCGGAGGCCAAGGATTTCCTTGACAAGTGCCTCAGGCGGTGCGCCGGCGAGCGGTGG
ACGGCAGAGCAGCTGCTGGAGCACCCGTTCTTGGCGTTCGCCGGCTGTGGCGCCGACGTCGAG------TCGGCGGAGCT
GAAGGGCAAGTGGGTTTCCCCCAAGAGCACATTGGACGCCGCAATGTGGGAA---TCCGACGCCGACGAGGATGAGAACG
TGCCCGATGATGACA---CGGCCGAGAGGATGAGGGCATTGGCGGCCTTCTGCTCGGTCTTGCCGGACTGGGAGTCCGAC
GACGGCTGGATCGATGT---------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3D_1035
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--------------------------------TCCGCACGCTCGGCCGCGGCGCGTCCGGCGCCGTCGTCTGGC---TCG
CCTCCGACGACGCCTC---CGGCGAGCTTCTCGCGGTCAAGTCGGCCGGCGCCGGCGCGGCC---GAGACGCTGCGGCGC
GAGGGCCGCGTCATGGCCGGGCTCTGCTCCCCGCACATCGTCCCGTGCCTCGGCTCCCGCGCCGCACCCGGCGGCGAGTA
CCAGCTCTTCCTCGAGTTCGCGCCGCGCGGCTCGCTCGCCGACGAGGCTGCCAGGAGCGGCGGGAGCCTCGCGGAGCGCG
CCATCCAGGGGTACGCGGGGGACGTGGCCAGGGGGCTTGCCTACCTCCACGGGAACTCGCTGGTGCACGGGGACGTCAAG
GCTAGGAACGTCATGCTCGGCGGCGACGGCCGAGCCAAGCTCGCGGACTTCGGATGCGCGAGGGCGGCGGA---TTCCGA
CCGGACGATCGGCGGCACTCCGGCGTTCATGGCGCCGGAGGTGGCGCGCGGGGAGGAGCAGGGCCTGGCGGCCGACGTGT
GGGCGCTCGGCTGCACCGTCATCGAGATGGCCACCGGCCGCGCCCCGTGGGGCGACATGGACGACGTCT-----------
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-----------------------------------------TCGCGGCGGTCCACCGGATCGGATACACGGACGCCGTGC
CCGAGCTGCCAGCGTCGCTGTCGCCGCAGGCCAAGGACTTCCTGTGCAAGTGCTTGGCAAGAAACCCCCGCCACCGGTCC
ACCGCCGCGCAGCTCCTAGAGCACCCGTTCCTCGCGTCCGCCTTCCGCGACGTCGACGCGGAA------CCGGCGAAGCA
GGATTGGA------TGTCCCCCAAGAGCACACTCAACGCGGAATTCTGGGAG---TCGGACGAGGAAAGCGAAACAGAGG
ACATGCTGACGAG---CGCGGCCGAGAGGATCGCCTCGTTGGCGAGCCCTTGCTCGGCCTTGCCAGACTGGGAGTCCGAC
GATGGCTGGATCGACGTGC-------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3D_1035
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--------------------------------TCCGCACGCTGGGACGCGGCGCGTCCGGCGCCGTCGTGTGGC---TTG
CGTCCGACGAAGCCTC---CGGAGAGCTCCTGGCCGTCAAGTCCGCCGGCGCCGGTGGCGCG---GCGCAGCTGGAGCGC
GAGGGCAGCGTGCTCACCGGGCTCTGCTCGCCGCACATCATCCCCTGCCTCGGCTCCCGCGCCGCGG-------------
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------------------------------------------AGTGCGGCGAGTACCAGCTCTTCCTCGAGTTCGCGCCC
GGCGGCTCGCTCGCGGATGAGGCCGCCAGGAGCGGGGGCTGCCTCCCGGAGCCCGCCATCCGGGCGTACGCAGGGGACGT
GGCCAGGGGGCTGGAGTACCTCCATGCGAGGTCGCTGGTCCACGGGGACGTGAAGGCACGGAACGTGGTGATCGGCGGCG
ACGGCCGCGCCAGGCTGACGGACTTCGGCTGCGCGAGGGCCGTGGACTCCCTGCTCCCGATGGGCGGCACGCCCGCGTTC
ATGGCGCCCGAGGTCGCGCGCGTCGAGGAGCAGGGGCCGGCGTCCGACGTGTGGGCGCTCGGCTGCACCGTCGTCGAGAT
GGCCACTGGCCGCGCGCCATGGAGCGACATGAACGATCTGCTCGCGGCCGTGCACCGGATCGGGTACACGGCCGCCGTGC
CGGAGGTGCCGGGGTGGCTCTCGGCGGAGGCCAAGGACTTCTTGGACGGATGCTTCAGGAGACAGCCCAGCGACCGGTCC
ACGGCAGCGCAGCTCTTGGATCACCCATTCGTTGCTTCCGCCGCTGCCGCCGGCGACTATAAGGCTGCGCCGGCGAAGCA
ACAATACA------CGTCTCCCAAGAGCACACTGCAGGACGCACTCTGGGAC---TCGGACACCGACGACGAGGCGGACG
AGATGTCGGCGACGC---CGGCCGAGAGGATCGGGGCATTGGCCTGCGGCAACTCGGCCCTGCCGGACTGGGACTCGGAC
GACGGCTGGATCGACGTG--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>chr3A_1035
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TCCGCACGCTCGGCCGCGGCGCGTCCGGCGCTGTCGTCTGGC---TCG
CCTCTGACGACGCCTC---CGGCCAGCTGCTCGCGGTCAAGTCTGCCGGCGCCGGCGCGGCC---GACACGCTGCGGCGC
GAGGGTAGTGTCATGGCGGGGCTCTGCTCCCCGCACATCGTCCCGTGCCTCGGCTCCCGCGCCGCGCCCGGCGGCGAGTA
CCAGCTCTTCCTCGAGTTCGCGCCGCGCGGCTCGCTCGCCGACGAGGCCGCCAGGAGCGGCGGCAGCCTCGCGGAGCGCG
CCATCCAGGGGTACGCGGCGGACGTGGCCAGGGGGCTGGCCTACCTCCACGGGAACTCGCTGGTGCACGGGGACGTCAAG
GCGAGGAACGTCATGGTCGGCGCCGACGGCCGAGCCAAGCTCGCGGACTTCGGGTGCGCGAGGGCCGCGGA---TTCCGA
CCGGACGATCGGCGGCACTCCGGCCTTCATGGCGCCGGAGGTGGCGCGCGGGGAGGAGCAGGGCCTGGCGGCCGACGTGT
GGGCGCTCGGCTGCACCGTCATCGAGATGGCCACCGGCCGCGCCCCCTGGAGCGGCATGGACGACGTCTTCGCGGCGGTC
CACCGGATCGGATACACGGACGACGTGCCTGAGCTGCCCGCGTCGCTGTCGCCGCAGGCCAAGGACTTCCTGCGCAAGTG
CTTCGCAAGAAACCCCCGCCACCGGTCCACCGCCGCGCAGCTCCTAGAGCACCCGTTCCTCGCGTCCGCCTTCCACGACG
TCGACGCGGAGCCGGCGAAGCAGGATTGGATCATGTCCCCCGAGAGCACACTCAACGCGGAATTCTGGGAGTCGGACGAG
GAAAGCGAAACAGAGGACATGCTGACGAGCGCGGCCGAGAGGATCGGCTCGCTGGCGAGCCCTTGCTCGGCCTTGCCAGA
CTGGGAGTCCGACGATGGCTGGATCGTCGTGCACGGCGGACGCCCTGAAGCTTCAGAAACAACGACGCCCACGGCGATCG
CCGGCACAGACTTCGGTCCTTGGAGTGAAGAAGGATTGGAAGCCGAGGTTGATGTCCATTTCGCTGGTGCTGATGCCGGC
AGGTGGTACGACCTTGTGCGGAATGTGGATGGAGCGCATTATTTCGGTTGGTACGAGAGAGATTTGGGTGTCAGTGTCGT
TACTGATAGACCGTTGTGCCTCATTGTTAGTCACGGACGCAAAATTGTAAAATTCGGTTGTCATTGCGACAGAGAAAGAA
CAATGCATTTTGATTTTGCACAAATATTTCGTTCTCTTGAGCTTCCGTCGCATGCTGTGTGCATTTTATCTTCCACTGAA
TGGGGGTATTGTCGTTTTTTGGCCTTTTCTTTTTATAACTAGCTGCTTATGGCCTCTTTAATATGCAGAATTTCAGAAAA
CGTAGAATTAGACAAAACACAAAAATAGGATAGGATCGCAGGGGCAATACAGAGGAATGGCAAAATAAAGGAATTTGCAG
AATCACATTTTTTTTTCTAAGGGATGCAGAATTACATGTTTGATAGGTAGGAATATGAGAAACATAGGATACATGGTCAA
ATTAAGGTTAGACCATATGCAAATTTAAGGTTAGCCAAAAGAGAGGTTTGACTGGATTGTAAATTTCCTTTGTTTTTTCT
AGTCAGTCCAAAAAGGAAATTTTCTCCATTTTTCATATTTTGAATCAAACAAATGATGGTGTTATCATATAAAAAAATTA
TAATCCCATGATTTTCCTTTAATTTTTTAACACAGCACAAACGCAACACACGCGCACACACTCACCCCTATGAACGCACA
CACCCACATCATACTTCCATGAACATCTTCAAGAGACTGAGCCGGCATATCATCAAGATCTTCACGGCTTGGGTTCCCTA
ACCATCCAACCACAGGTTGGTTCGCGATTCTCATTTACTTTTCTAATGAATTAAAGTGGCCCTTACTAAGTCGGCAATAG
AATTGCATTTTCTGCTTCACAATGTTCTAGGATTAAACAAATTACTACTCCGAGTCTTCTGGGAGAAAATGTTAGGGAAT
CCAAGCCGTGAAGATCTTGATCTGCAATCCAATAAGAAGAAAATAGTAGTCTTTTTTTGCGGGTGAAAAAAATTGTACTC
CAGGTTTGCTCCTAGAGCACTGTGTCATCTTTTGAGTTTTGATACCAGGTGGTAACTTCTTGTTACAGTGTGTGTTGTGT
TCTCAACGGATGTCCTTGAGAGGCTTAAACCCCCCGAAAATGGTGGGATGTTCTGGCCGCCGAACGAAACGTGCCTCTAG
CAAACGGCGATGGACTGGATGATGATGGACGTGTCGACGTTGTACGACAAAGCCTAACGAGAGAAATGTCCAAGGCGAGA
CTGGGACGTAACCGCGAGGCACATAACTAACACGACGCGTCGAGGAGGCCTTATCGGTTAGGCTCGGCTCCGGAGCACGT
CACGTGGAGAGCCAAAATGACACTTCACCCAGACACTTACTGAGAAGCAAGTAAGCAACGCTAGTATATATCCACTATTT
TTATTTCTAAAAGTCGGAGTAGAATGATCATCGTATACGTCGACAATGATCATGTTGCATCACGTGACGCTCACAATTCA
ATTCAGGCGCCGACGCACCTACCCCTGGAGCTGATCCAGATCCGCCAAACAAACGCAAAGGCAGCAGAAAAACGACGGGA
AAGGACACGCCAAAAATACCATGACCAAAATAAGACCCCCACGTTCGTTACACCTTCCTTTGCAGCCGGAGAACAGAGGA
GAAGGCCTTTTCATTTCTAGCAGCAGACGCGCACAGAAACGCTGCGAGCTCCATTCTCGCACGTGTTCCTTCCGCGCACC
CAACCAATGCTGGTCTCTTCCTCGTCGCACGCCACTCCGCACATATAATAAATACACCTCGCGCACCATCCCTCCTGTCC
ATCCTCACATCGCATACAAAGTCAGCTCAGAATCAATCCAACCGGAACACCGACGACCAACTATGGATGTCGCCGTGGCG
AAGCAACTCAGGCGGATCCGCACGCTGGGCCGCGGCGCGTCTGGCGCCGTCGTGTGGCTCGCGTCCGACGAGGCCTCGGG
GAAGCTCCTGGCCGTCAAGTCCGCCGCCGCCGGTGGCGCGGCGCAGCTGGAGCGCGAGGGCAGCGTGCTCACCGGGCTCT
GCTCGCCGCACATCATCCCCTGCCTCGGCTCCCGCGCCGCGGAGTGCGGCGAGTACCAGCTCTTCCTCGAGTTCGCGCCC
GGCGGCTCGCTCGCGGATGAGGCCGCCAGGAGCGGGGGCTGCCTCCCGGAGCCCGCCATCCGGGCGTACGCCGGGGACGT
GGCCAGGGGGCTGGAGTACCTCCATGCGAGGTCGCTGGTCCACGGGGACGTGAAGGCACGGAACGTGGTGATCGGCGGCG
ACGGCCGCGCCAGGCTCACCGACTTCGGCTGCGCGAGGGCCGTGGACTCCCTGCTCCCGATGGGCGGCACGCCGGCGTTC
ATGGCGCCGGAGGTCGCGCGCGGCGAGGAGCAGGGGCCGGCGTCCGACGTGTGGGCGCTCGGCTGCACCGTCGTCGAGAT
GGCCACTGGCCGCGCGCCATGGAGCGACATGAACGATCTGCTCGCGGCCGTGCACCGGATCGGGTACACCGCCGCCGTGC
CGGAGGTGCCGGGGTGGCTCTCCGCGGAGGCCAAGGACTTCTTGGACGGATGCTTCAGGAGGCAGCCCAGCGACAGGTCC
ACCGGAGCGCAGCTCTTGGATCACCCGTTCGTTGCTTCCGCCGCTGCCGCCTGCGACTACAAGGCCGCGCCGGCGAAGCA
ACAATACA------CGTCTCCCAAGAGCACGCTGCAGGACGCACTCTGGGAC---TCGGACACCGACGACGAGGAGGCGG
ACGAA------ACGC---CGGCCGAGAGGATCGGGGCATTGGCCTGCGGCAACTCGGCCTTGCCGGACTGGGACTCGGAA
GATGGCTGGATCGATGTG--------------------------------------------------------------
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-------------------------------------------------------------------------------
>SNPs
-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--------S---S--------------------------S----------------------------------------
---------------------------S----------------------------------------------------
-SS---------------------S-------------------------------------------------------
------------------------------------------------------------------S-------------
-----------------------------SS-------SSSSS-------------------------------------
----SSS---------------------------------------------S---------------------------
--S-----------------S-------S-----------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S----------------------------------------S----------------------------------S---
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
---------------------S----------------------------------------------------------
--------------------S--------------------------------------------S--------------
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-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
----S-----------------------------------------------------------------S-------S-
----S--------------S---------------------------------------------------SSS------
----------------------S---S-------S----S-------------------------------S--------
--S---S--S-S-S-----------S---S--S-------------------S---------------------------
--S----------------------------------S--S-----------S-------------------------S-
----------------------S----------S------------------S-----S-------------S-SSSSSS
SSSSSSS--------------SS---------------------------------------------------------
-----S--S---SSSS--------SS-S------------------------SSSSSS---------------------S
-------------------------S-------S-----S----------S-S-S------------------S------
-----S--SSS-SSS----------S-----S---------S----------S---------------------------
---S--S----------S-----S----------------------------------------S---------------
--------S---S-----S-----------------------------------------S------------SSSSSSS
--------------------------------S---------------------S--------S----------------
----S---S---S-----SS-------------------------------------------------S----------
---------------------S--------------------SS--SS-------------SS-----S-----S-----
S-----------SSSSSSSSS--------------S-----------SS-S-SSSSSSSSSSS-SS--S-----------
------SS---SSSSSSSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------S
---S---------------------S-------S-------S-S-S-------S-------S----SSS------S----
-----S------------------------------------------------------------------------S
>forward_51
-------------------------------GTTATGCACTAGCGCGTGTG-----------------------------
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>reverse_5034
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-------------------------------------------------------------------------TTCAGAC
GAAGGCTGGATCG-------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------
>forward_178
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GG
AGAGGGTGTGTGTGTGAG--------------------------------------------------------------
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>reverse_5238
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-------------------------------------TTGTTCGGGCCTCTTCAGTG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>forward_307
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ACACACGGGCGTTCTTCTAG-------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_5362
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-CCTTGTGTGCGCGCTTAATT-----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------
>forward_4959
--------------------------------------------------------------------------------
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-----------------------------------------------------------ACACCGAAGACAACGACGAA-
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------
>reverse_6129
--------------------------------------------------------------------------------
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------------------------------------------------CGTACGCACTTATCTCGGCT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
