Multiple sequence alignment - TraesCS3D01G251600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G251600 chr3D 100.000 3448 0 0 1 3448 352369195 352365748 0.000000e+00 6368.0
1 TraesCS3D01G251600 chr3B 92.668 3478 106 53 1 3448 451362785 451359427 0.000000e+00 4872.0
2 TraesCS3D01G251600 chr3A 94.138 2951 97 29 516 3448 470830456 470827564 0.000000e+00 4421.0
3 TraesCS3D01G251600 chr3A 89.474 399 20 8 1 387 470830921 470830533 5.170000e-133 484.0
4 TraesCS3D01G251600 chr2A 91.589 107 9 0 1261 1367 100826056 100825950 7.710000e-32 148.0
5 TraesCS3D01G251600 chr2B 91.509 106 9 0 1261 1366 152844328 152844223 2.770000e-31 147.0
6 TraesCS3D01G251600 chr2B 93.421 76 4 1 3370 3444 215840800 215840725 1.010000e-20 111.0
7 TraesCS3D01G251600 chr1D 84.559 136 21 0 1251 1386 68446376 68446511 6.000000e-28 135.0
8 TraesCS3D01G251600 chr1A 84.559 136 21 0 1251 1386 66892801 66892936 6.000000e-28 135.0
9 TraesCS3D01G251600 chr1A 85.714 84 9 3 1040 1122 545000231 545000312 6.130000e-13 86.1
10 TraesCS3D01G251600 chr4B 80.925 173 30 3 1218 1388 100576626 100576797 2.160000e-27 134.0
11 TraesCS3D01G251600 chr4D 80.571 175 27 6 1218 1388 68053377 68053548 1.000000e-25 128.0
12 TraesCS3D01G251600 chr4A 82.759 145 24 1 1244 1388 517884585 517884728 1.000000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G251600 chr3D 352365748 352369195 3447 True 6368.0 6368 100.000 1 3448 1 chr3D.!!$R1 3447
1 TraesCS3D01G251600 chr3B 451359427 451362785 3358 True 4872.0 4872 92.668 1 3448 1 chr3B.!!$R1 3447
2 TraesCS3D01G251600 chr3A 470827564 470830921 3357 True 2452.5 4421 91.806 1 3448 2 chr3A.!!$R1 3447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 534 0.182061 ATTCACAGCCAGGCATCGAT 59.818 50.000 15.80 0.00 0.00 3.59 F
738 756 0.243907 TGCTGCTCACGAGTAGGTTC 59.756 55.000 13.13 0.00 40.81 3.62 F
952 973 0.321034 CTACCAGTGCAGCAGCTCAA 60.321 55.000 1.76 0.00 42.74 3.02 F
1427 1459 1.404986 GCTTGAATGCATGCATGGTGT 60.405 47.619 32.79 17.96 42.79 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1398 1430 0.037160 TGCATTCAAGCTGGAGCAGA 59.963 50.000 0.94 0.0 45.16 4.26 R
2336 2384 2.125512 GCGTCCATGAAGTCCGCT 60.126 61.111 0.00 0.0 41.06 5.52 R
2360 2408 2.675772 GACGTGGACGAGGACCCT 60.676 66.667 6.12 0.0 43.02 4.34 R
3377 3442 0.313672 TGTTCAGCCGCAAATGGAAC 59.686 50.000 0.00 0.0 38.59 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 68 1.178276 GCTCCTCGTCTCTCTTTGGA 58.822 55.000 0.00 0.00 0.00 3.53
103 116 4.202121 CGATCCCAAATCTCGACCTTTCTA 60.202 45.833 0.00 0.00 34.41 2.10
115 128 3.186613 CGACCTTTCTACCAAAGCTGAAC 59.813 47.826 0.00 0.00 0.00 3.18
170 183 9.170584 CTGTATATATACAAAGTGACACAGTCG 57.829 37.037 22.67 5.99 42.20 4.18
171 184 7.646526 TGTATATATACAAAGTGACACAGTCGC 59.353 37.037 20.81 2.65 40.08 5.19
172 185 2.588027 TACAAAGTGACACAGTCGCA 57.412 45.000 8.59 0.00 44.42 5.10
173 186 1.732941 ACAAAGTGACACAGTCGCAA 58.267 45.000 8.59 0.00 44.42 4.85
205 218 6.901300 AGTGATACAGTCCCAGAGGTAAATTA 59.099 38.462 0.00 0.00 0.00 1.40
242 256 0.931702 TGTGGCACGTAAGAACAACG 59.068 50.000 13.77 0.00 45.64 4.10
328 342 1.573829 GGTCAGAACGCGCAAATGGA 61.574 55.000 5.73 0.00 0.00 3.41
414 431 2.932614 CCATGTACTCTGAAGAAAGCGG 59.067 50.000 0.00 0.00 0.00 5.52
415 432 2.743636 TGTACTCTGAAGAAAGCGGG 57.256 50.000 0.00 0.00 0.00 6.13
416 433 1.275291 TGTACTCTGAAGAAAGCGGGG 59.725 52.381 0.00 0.00 0.00 5.73
417 434 0.249398 TACTCTGAAGAAAGCGGGGC 59.751 55.000 0.00 0.00 0.00 5.80
436 453 1.525442 GGGCAGTTATGGGCGTACT 59.475 57.895 0.00 0.00 0.00 2.73
437 454 0.814010 GGGCAGTTATGGGCGTACTG 60.814 60.000 0.00 0.00 41.64 2.74
453 470 4.426971 TGCATGCAGGCAGTGAAT 57.573 50.000 24.07 0.00 39.25 2.57
485 503 8.184192 GCTTATGCAAATTGATTACACACTACT 58.816 33.333 0.00 0.00 39.41 2.57
486 504 9.494479 CTTATGCAAATTGATTACACACTACTG 57.506 33.333 0.00 0.00 0.00 2.74
487 505 6.875948 TGCAAATTGATTACACACTACTGT 57.124 33.333 0.00 0.00 0.00 3.55
488 506 7.971183 TGCAAATTGATTACACACTACTGTA 57.029 32.000 0.00 0.00 0.00 2.74
489 507 8.384607 TGCAAATTGATTACACACTACTGTAA 57.615 30.769 0.00 0.00 40.17 2.41
505 523 5.862924 ACTGTAATGTACACATTCACAGC 57.137 39.130 25.03 11.64 44.67 4.40
515 533 0.745486 CATTCACAGCCAGGCATCGA 60.745 55.000 15.80 3.11 0.00 3.59
516 534 0.182061 ATTCACAGCCAGGCATCGAT 59.818 50.000 15.80 0.00 0.00 3.59
519 537 2.369633 ACAGCCAGGCATCGATGGA 61.370 57.895 26.00 0.00 39.02 3.41
520 538 1.072678 CAGCCAGGCATCGATGGAT 59.927 57.895 26.00 7.68 39.02 3.41
521 539 0.954449 CAGCCAGGCATCGATGGATC 60.954 60.000 26.00 10.03 39.02 3.36
738 756 0.243907 TGCTGCTCACGAGTAGGTTC 59.756 55.000 13.13 0.00 40.81 3.62
765 783 0.969894 GCCCGTGCTAGATGGATACT 59.030 55.000 0.00 0.00 31.27 2.12
768 786 3.687125 CCCGTGCTAGATGGATACTAGA 58.313 50.000 0.00 0.00 39.48 2.43
769 787 4.274147 CCCGTGCTAGATGGATACTAGAT 58.726 47.826 0.00 0.00 39.48 1.98
770 788 5.437946 CCCGTGCTAGATGGATACTAGATA 58.562 45.833 0.00 0.00 39.48 1.98
771 789 5.529430 CCCGTGCTAGATGGATACTAGATAG 59.471 48.000 0.00 0.00 39.48 2.08
772 790 5.529430 CCGTGCTAGATGGATACTAGATAGG 59.471 48.000 0.00 0.00 39.48 2.57
773 791 6.350103 CGTGCTAGATGGATACTAGATAGGA 58.650 44.000 0.00 0.00 39.48 2.94
850 868 2.694397 TCTGCCTGCCCTTAGATGTAT 58.306 47.619 0.00 0.00 0.00 2.29
908 929 1.714541 TGCCCTCTCTCATCTCATCC 58.285 55.000 0.00 0.00 0.00 3.51
926 947 8.280258 TCTCATCCCATCTTCTTTATAACCAT 57.720 34.615 0.00 0.00 0.00 3.55
927 948 8.159447 TCTCATCCCATCTTCTTTATAACCATG 58.841 37.037 0.00 0.00 0.00 3.66
928 949 7.815383 TCATCCCATCTTCTTTATAACCATGT 58.185 34.615 0.00 0.00 0.00 3.21
929 950 8.944138 TCATCCCATCTTCTTTATAACCATGTA 58.056 33.333 0.00 0.00 0.00 2.29
930 951 9.003658 CATCCCATCTTCTTTATAACCATGTAC 57.996 37.037 0.00 0.00 0.00 2.90
931 952 8.331931 TCCCATCTTCTTTATAACCATGTACT 57.668 34.615 0.00 0.00 0.00 2.73
932 953 8.429641 TCCCATCTTCTTTATAACCATGTACTC 58.570 37.037 0.00 0.00 0.00 2.59
933 954 7.661847 CCCATCTTCTTTATAACCATGTACTCC 59.338 40.741 0.00 0.00 0.00 3.85
934 955 8.432805 CCATCTTCTTTATAACCATGTACTCCT 58.567 37.037 0.00 0.00 0.00 3.69
937 958 8.921205 TCTTCTTTATAACCATGTACTCCTACC 58.079 37.037 0.00 0.00 0.00 3.18
938 959 8.612486 TTCTTTATAACCATGTACTCCTACCA 57.388 34.615 0.00 0.00 0.00 3.25
939 960 8.246430 TCTTTATAACCATGTACTCCTACCAG 57.754 38.462 0.00 0.00 0.00 4.00
940 961 7.842743 TCTTTATAACCATGTACTCCTACCAGT 59.157 37.037 0.00 0.00 0.00 4.00
941 962 5.871396 ATAACCATGTACTCCTACCAGTG 57.129 43.478 0.00 0.00 0.00 3.66
942 963 1.831736 ACCATGTACTCCTACCAGTGC 59.168 52.381 0.00 0.00 0.00 4.40
943 964 1.831106 CCATGTACTCCTACCAGTGCA 59.169 52.381 0.00 0.00 42.36 4.57
944 965 2.159043 CCATGTACTCCTACCAGTGCAG 60.159 54.545 0.00 0.00 41.59 4.41
945 966 0.895530 TGTACTCCTACCAGTGCAGC 59.104 55.000 0.00 0.00 34.45 5.25
946 967 0.895530 GTACTCCTACCAGTGCAGCA 59.104 55.000 0.00 0.00 0.00 4.41
947 968 1.134965 GTACTCCTACCAGTGCAGCAG 60.135 57.143 0.00 0.00 0.00 4.24
948 969 1.449246 CTCCTACCAGTGCAGCAGC 60.449 63.158 0.00 0.00 42.57 5.25
949 970 1.897225 CTCCTACCAGTGCAGCAGCT 61.897 60.000 1.76 0.00 42.74 4.24
950 971 1.449246 CCTACCAGTGCAGCAGCTC 60.449 63.158 1.76 0.00 42.74 4.09
951 972 1.294459 CTACCAGTGCAGCAGCTCA 59.706 57.895 1.76 0.00 42.74 4.26
952 973 0.321034 CTACCAGTGCAGCAGCTCAA 60.321 55.000 1.76 0.00 42.74 3.02
965 986 3.123620 CTCAAGCAGCCTGCCGTC 61.124 66.667 14.25 0.00 46.52 4.79
990 1015 6.017026 CAGTGTGAAGTAGTAGTTGAGTGAGA 60.017 42.308 0.00 0.00 0.00 3.27
991 1016 6.205853 AGTGTGAAGTAGTAGTTGAGTGAGAG 59.794 42.308 0.00 0.00 0.00 3.20
1197 1229 3.791245 GCTAGCTAGCTGTGTTCTTGAT 58.209 45.455 33.71 0.00 45.62 2.57
1226 1258 5.515270 CACTTTCTGCATTGCTGAATATGTG 59.485 40.000 25.41 25.39 43.68 3.21
1244 1276 4.730600 TGTGTGTGTTCATCTTCATTCG 57.269 40.909 0.00 0.00 0.00 3.34
1427 1459 1.404986 GCTTGAATGCATGCATGGTGT 60.405 47.619 32.79 17.96 42.79 4.16
1557 1599 4.399112 CGCGTAGTGCAAAATCACATTAA 58.601 39.130 0.00 0.00 46.97 1.40
1622 1664 6.694411 CAGATTGAGCTAATACCAAAATGTGC 59.306 38.462 0.00 0.00 0.00 4.57
1709 1751 3.815401 CGGACAATGAGGTGAAGAACTTT 59.185 43.478 0.00 0.00 0.00 2.66
1833 1877 8.191446 TGTACTAGTAACTACTCCAGTACGTAG 58.809 40.741 17.32 4.64 44.06 3.51
1847 1895 1.739067 ACGTAGGAAATTGCAGAGCC 58.261 50.000 0.00 0.00 0.00 4.70
1901 1949 7.201644 CCATCTAATCTGACACCAAACATGTAC 60.202 40.741 0.00 0.00 0.00 2.90
2108 2156 2.097825 GCATGGCTCAATTTCACCTCT 58.902 47.619 0.00 0.00 0.00 3.69
2462 2510 1.358152 CCTGAGTTACTGGTTGGGGA 58.642 55.000 0.00 0.00 33.70 4.81
2496 2544 4.499183 GTGTATGTATGGCCTGATCTAGC 58.501 47.826 3.32 0.00 0.00 3.42
2913 2966 2.159572 GCAGTAACCGGTGCTAAACATG 60.160 50.000 8.52 0.00 36.71 3.21
3074 3139 0.623723 TGGTAGGCCAAGGTTGATCC 59.376 55.000 5.01 0.00 42.83 3.36
3075 3140 0.623723 GGTAGGCCAAGGTTGATCCA 59.376 55.000 5.01 0.00 34.92 3.41
3076 3141 1.682087 GGTAGGCCAAGGTTGATCCAC 60.682 57.143 5.01 0.00 34.92 4.02
3222 3287 2.704572 GCTACAGTCCTGCAAATGTCT 58.295 47.619 0.00 0.00 0.00 3.41
3377 3442 4.174129 GGACGCGCAAATTCCCCG 62.174 66.667 5.73 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 68 2.916703 TGTGCGCCCTGCCAATTT 60.917 55.556 4.18 0.00 45.60 1.82
103 116 3.612479 GCATTCATTCGTTCAGCTTTGGT 60.612 43.478 0.00 0.00 0.00 3.67
115 128 1.296867 GTCCGCGTGCATTCATTCG 60.297 57.895 4.92 0.00 0.00 3.34
186 199 6.449830 AAACTAATTTACCTCTGGGACTGT 57.550 37.500 0.00 0.00 36.25 3.55
192 205 5.093849 TCGGGAAACTAATTTACCTCTGG 57.906 43.478 0.00 0.00 45.75 3.86
242 256 3.432252 TGTGCTCTTTACTTCTTTAGCGC 59.568 43.478 0.00 0.00 40.08 5.92
328 342 8.830580 CAATTCGTCAAGAAGATATGTAATGGT 58.169 33.333 0.00 0.00 42.92 3.55
416 433 3.743534 TACGCCCATAACTGCCCGC 62.744 63.158 0.00 0.00 0.00 6.13
417 434 1.885850 GTACGCCCATAACTGCCCG 60.886 63.158 0.00 0.00 0.00 6.13
436 453 0.970640 AAATTCACTGCCTGCATGCA 59.029 45.000 21.29 21.29 39.37 3.96
437 454 1.997606 GAAAATTCACTGCCTGCATGC 59.002 47.619 11.82 11.82 0.00 4.06
438 455 3.250744 CAGAAAATTCACTGCCTGCATG 58.749 45.455 0.00 0.00 0.00 4.06
439 456 3.587797 CAGAAAATTCACTGCCTGCAT 57.412 42.857 0.00 0.00 0.00 3.96
475 492 8.578151 TGAATGTGTACATTACAGTAGTGTGTA 58.422 33.333 16.92 4.60 45.72 2.90
482 500 5.872617 GGCTGTGAATGTGTACATTACAGTA 59.127 40.000 26.10 14.02 45.72 2.74
485 503 4.646572 TGGCTGTGAATGTGTACATTACA 58.353 39.130 10.00 12.45 45.72 2.41
486 504 4.094887 CCTGGCTGTGAATGTGTACATTAC 59.905 45.833 10.00 9.29 45.72 1.89
487 505 4.260985 CCTGGCTGTGAATGTGTACATTA 58.739 43.478 10.00 0.00 45.72 1.90
489 507 2.715046 CCTGGCTGTGAATGTGTACAT 58.285 47.619 0.00 0.00 38.41 2.29
515 533 1.323271 ACTGTGCGTCTCCGATCCAT 61.323 55.000 0.00 0.00 35.63 3.41
516 534 0.678684 TACTGTGCGTCTCCGATCCA 60.679 55.000 0.00 0.00 35.63 3.41
519 537 0.885879 TTGTACTGTGCGTCTCCGAT 59.114 50.000 0.00 0.00 35.63 4.18
520 538 0.240145 CTTGTACTGTGCGTCTCCGA 59.760 55.000 0.00 0.00 35.63 4.55
521 539 0.240145 TCTTGTACTGTGCGTCTCCG 59.760 55.000 0.00 0.00 37.07 4.63
522 540 1.269998 ACTCTTGTACTGTGCGTCTCC 59.730 52.381 0.00 0.00 0.00 3.71
523 541 2.708386 ACTCTTGTACTGTGCGTCTC 57.292 50.000 0.00 0.00 0.00 3.36
524 542 2.288273 GGAACTCTTGTACTGTGCGTCT 60.288 50.000 0.00 0.00 0.00 4.18
525 543 2.059541 GGAACTCTTGTACTGTGCGTC 58.940 52.381 0.00 0.00 0.00 5.19
526 544 1.270147 GGGAACTCTTGTACTGTGCGT 60.270 52.381 0.00 0.00 0.00 5.24
765 783 4.202695 GCCCTACTCCTTCCTTCCTATCTA 60.203 50.000 0.00 0.00 0.00 1.98
768 786 2.524875 AGCCCTACTCCTTCCTTCCTAT 59.475 50.000 0.00 0.00 0.00 2.57
769 787 1.938069 AGCCCTACTCCTTCCTTCCTA 59.062 52.381 0.00 0.00 0.00 2.94
770 788 0.719623 AGCCCTACTCCTTCCTTCCT 59.280 55.000 0.00 0.00 0.00 3.36
771 789 1.124780 GAGCCCTACTCCTTCCTTCC 58.875 60.000 0.00 0.00 39.75 3.46
772 790 0.747852 CGAGCCCTACTCCTTCCTTC 59.252 60.000 0.00 0.00 43.01 3.46
773 791 0.335361 TCGAGCCCTACTCCTTCCTT 59.665 55.000 0.00 0.00 43.01 3.36
908 929 8.432805 AGGAGTACATGGTTATAAAGAAGATGG 58.567 37.037 0.00 0.00 0.00 3.51
926 947 0.895530 GCTGCACTGGTAGGAGTACA 59.104 55.000 0.00 0.00 0.00 2.90
927 948 0.895530 TGCTGCACTGGTAGGAGTAC 59.104 55.000 0.00 0.00 0.00 2.73
928 949 1.186200 CTGCTGCACTGGTAGGAGTA 58.814 55.000 0.00 0.00 39.70 2.59
929 950 1.978473 CTGCTGCACTGGTAGGAGT 59.022 57.895 0.00 0.00 39.70 3.85
930 951 1.449246 GCTGCTGCACTGGTAGGAG 60.449 63.158 11.11 0.00 45.66 3.69
931 952 1.892819 GAGCTGCTGCACTGGTAGGA 61.893 60.000 18.42 0.00 42.74 2.94
932 953 1.449246 GAGCTGCTGCACTGGTAGG 60.449 63.158 18.42 0.00 42.74 3.18
933 954 0.321034 TTGAGCTGCTGCACTGGTAG 60.321 55.000 18.42 0.00 42.74 3.18
934 955 0.321034 CTTGAGCTGCTGCACTGGTA 60.321 55.000 18.42 0.00 42.74 3.25
935 956 1.600076 CTTGAGCTGCTGCACTGGT 60.600 57.895 18.42 0.00 42.74 4.00
936 957 2.979197 GCTTGAGCTGCTGCACTGG 61.979 63.158 18.42 9.33 42.74 4.00
937 958 2.188849 CTGCTTGAGCTGCTGCACTG 62.189 60.000 18.42 9.68 42.74 3.66
938 959 1.966972 CTGCTTGAGCTGCTGCACT 60.967 57.895 18.42 0.86 42.74 4.40
939 960 2.561885 CTGCTTGAGCTGCTGCAC 59.438 61.111 18.42 12.19 42.74 4.57
948 969 3.123620 GACGGCAGGCTGCTTGAG 61.124 66.667 35.73 25.57 44.28 3.02
949 970 3.889134 CTGACGGCAGGCTGCTTGA 62.889 63.158 35.73 18.25 44.28 3.02
950 971 3.429141 CTGACGGCAGGCTGCTTG 61.429 66.667 35.73 29.24 44.28 4.01
951 972 3.946201 ACTGACGGCAGGCTGCTT 61.946 61.111 35.73 24.31 46.60 3.91
952 973 4.694233 CACTGACGGCAGGCTGCT 62.694 66.667 35.73 20.08 46.60 4.24
962 983 5.104562 TCAACTACTACTTCACACTGACG 57.895 43.478 0.00 0.00 0.00 4.35
965 986 6.017026 TCTCACTCAACTACTACTTCACACTG 60.017 42.308 0.00 0.00 0.00 3.66
990 1015 1.383803 GTGCCCCATCTCCTCTCCT 60.384 63.158 0.00 0.00 0.00 3.69
991 1016 2.447714 GGTGCCCCATCTCCTCTCC 61.448 68.421 0.00 0.00 0.00 3.71
1197 1229 2.551032 CAGCAATGCAGAAAGTGAGTGA 59.449 45.455 8.35 0.00 0.00 3.41
1226 1258 3.482786 GCACGAATGAAGATGAACACAC 58.517 45.455 0.00 0.00 0.00 3.82
1397 1429 0.733729 GCATTCAAGCTGGAGCAGAG 59.266 55.000 0.65 0.00 45.16 3.35
1398 1430 0.037160 TGCATTCAAGCTGGAGCAGA 59.963 50.000 0.94 0.00 45.16 4.26
1427 1459 0.257616 GCATGTAGGGTAGGGGCAAA 59.742 55.000 0.00 0.00 0.00 3.68
1557 1599 4.008074 TCATTCCTTTTCTCGAGCAAGT 57.992 40.909 7.81 0.00 0.00 3.16
1721 1763 5.363101 TGCGATATGAGCTTCTTCTTGATT 58.637 37.500 0.00 0.00 35.28 2.57
1833 1877 2.716217 ACTAGTGGCTCTGCAATTTCC 58.284 47.619 0.00 0.00 0.00 3.13
2336 2384 2.125512 GCGTCCATGAAGTCCGCT 60.126 61.111 0.00 0.00 41.06 5.52
2360 2408 2.675772 GACGTGGACGAGGACCCT 60.676 66.667 6.12 0.00 43.02 4.34
2462 2510 6.481643 GCCATACATACACCTACCCAAATAT 58.518 40.000 0.00 0.00 0.00 1.28
2516 2565 9.895507 ATTCCATCATCAGCTAGGAGTATATAT 57.104 33.333 0.00 0.00 0.00 0.86
2639 2692 8.191446 ACACGGACAAGCATGATATATATACTC 58.809 37.037 0.00 0.00 0.00 2.59
2913 2966 7.066284 ACACCTGACAGATATAACAATTTCAGC 59.934 37.037 3.32 0.00 0.00 4.26
3076 3141 2.175184 CTGGAAACAAGACGCCTGCG 62.175 60.000 10.40 10.40 42.06 5.18
3357 3422 3.122323 GGAATTTGCGCGTCCGGA 61.122 61.111 8.43 0.00 34.32 5.14
3377 3442 0.313672 TGTTCAGCCGCAAATGGAAC 59.686 50.000 0.00 0.00 38.59 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.