Multiple sequence alignment - TraesCS3D01G249800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G249800 chr3D 100.000 2687 0 0 1 2687 349859477 349862163 0.000000e+00 4963
1 TraesCS3D01G249800 chr3D 89.432 634 56 6 995 1618 350735956 350735324 0.000000e+00 789
2 TraesCS3D01G249800 chr3A 90.000 1450 85 28 493 1906 468002797 468004222 0.000000e+00 1820
3 TraesCS3D01G249800 chr3A 89.668 542 51 2 1080 1618 468317361 468316822 0.000000e+00 686
4 TraesCS3D01G249800 chr3A 87.332 371 29 8 2327 2686 468004251 468004614 2.490000e-110 409
5 TraesCS3D01G249800 chr3A 91.071 168 12 3 1948 2113 112333364 112333530 9.680000e-55 224
6 TraesCS3D01G249800 chr3B 94.208 1174 36 9 631 1789 448773238 448774394 0.000000e+00 1762
7 TraesCS3D01G249800 chr3B 85.398 904 66 37 1806 2687 448777092 448777951 0.000000e+00 878
8 TraesCS3D01G249800 chr3B 89.474 627 63 1 995 1618 449156866 449156240 0.000000e+00 789
9 TraesCS3D01G249800 chr3B 95.588 408 17 1 1 407 778237025 778237432 0.000000e+00 652
10 TraesCS3D01G249800 chr1D 99.015 406 4 0 1 406 349546547 349546142 0.000000e+00 728
11 TraesCS3D01G249800 chr1D 97.794 408 9 0 1 408 225558538 225558131 0.000000e+00 704
12 TraesCS3D01G249800 chr1D 86.667 180 11 4 1946 2116 465126424 465126599 1.270000e-43 187
13 TraesCS3D01G249800 chr1D 98.958 96 1 0 399 494 349546239 349546144 3.560000e-39 172
14 TraesCS3D01G249800 chr7D 98.267 404 7 0 1 404 619380832 619381235 0.000000e+00 708
15 TraesCS3D01G249800 chr7D 87.654 162 12 1 1955 2108 312470549 312470388 5.910000e-42 182
16 TraesCS3D01G249800 chr7D 98.000 100 2 0 399 498 619381140 619381239 9.890000e-40 174
17 TraesCS3D01G249800 chr7D 97.030 101 3 0 399 499 220291471 220291571 1.280000e-38 171
18 TraesCS3D01G249800 chr7D 97.000 100 3 0 399 498 26557876 26557975 4.600000e-38 169
19 TraesCS3D01G249800 chr7D 97.000 100 3 0 399 498 63480868 63480967 4.600000e-38 169
20 TraesCS3D01G249800 chr2D 97.778 405 8 1 1 404 568725604 568726008 0.000000e+00 697
21 TraesCS3D01G249800 chr2D 87.574 169 13 2 1951 2112 511918611 511918778 3.530000e-44 189
22 TraesCS3D01G249800 chr6D 95.792 404 10 1 1 404 433718996 433719392 0.000000e+00 645
23 TraesCS3D01G249800 chr6D 97.035 371 11 0 1 371 18941718 18941348 2.270000e-175 625
24 TraesCS3D01G249800 chr6D 96.190 105 4 0 390 494 433719288 433719392 3.560000e-39 172
25 TraesCS3D01G249800 chr6B 94.426 305 17 0 96 400 3584141 3583837 1.130000e-128 470
26 TraesCS3D01G249800 chr5A 91.824 318 25 1 88 404 328806761 328807078 2.460000e-120 442
27 TraesCS3D01G249800 chr5A 95.192 104 5 0 399 502 509980300 509980197 5.950000e-37 165
28 TraesCS3D01G249800 chr2A 87.363 182 13 3 1947 2119 218122419 218122239 1.630000e-47 200
29 TraesCS3D01G249800 chr7A 87.791 172 12 2 1947 2109 115736429 115736258 2.730000e-45 193
30 TraesCS3D01G249800 chr7A 88.750 160 12 1 1955 2108 381242739 381242898 9.820000e-45 191
31 TraesCS3D01G249800 chr6A 87.719 171 13 3 1947 2109 85268231 85268061 2.730000e-45 193
32 TraesCS3D01G249800 chr5D 98.969 97 1 0 13 109 545141978 545142074 9.890000e-40 174
33 TraesCS3D01G249800 chr5D 97.000 100 3 0 399 498 113405520 113405421 4.600000e-38 169
34 TraesCS3D01G249800 chr1B 96.078 102 4 0 399 500 566984774 566984673 1.650000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G249800 chr3D 349859477 349862163 2686 False 4963.0 4963 100.000 1 2687 1 chr3D.!!$F1 2686
1 TraesCS3D01G249800 chr3D 350735324 350735956 632 True 789.0 789 89.432 995 1618 1 chr3D.!!$R1 623
2 TraesCS3D01G249800 chr3A 468002797 468004614 1817 False 1114.5 1820 88.666 493 2686 2 chr3A.!!$F2 2193
3 TraesCS3D01G249800 chr3A 468316822 468317361 539 True 686.0 686 89.668 1080 1618 1 chr3A.!!$R1 538
4 TraesCS3D01G249800 chr3B 448773238 448777951 4713 False 1320.0 1762 89.803 631 2687 2 chr3B.!!$F2 2056
5 TraesCS3D01G249800 chr3B 449156240 449156866 626 True 789.0 789 89.474 995 1618 1 chr3B.!!$R1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.251341 GCTGATGGGTTGTGGTCCTT 60.251 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 4569 1.552337 ACGGAGTCAGTCATCTGCATT 59.448 47.619 0.0 0.0 29.74 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.767478 AAAATGATTCAACAAATGAGATGGAC 57.233 30.769 0.00 0.00 39.77 4.02
29 30 7.470935 AATGATTCAACAAATGAGATGGACA 57.529 32.000 0.00 0.00 39.77 4.02
30 31 6.505044 TGATTCAACAAATGAGATGGACAG 57.495 37.500 0.00 0.00 39.77 3.51
31 32 6.005823 TGATTCAACAAATGAGATGGACAGT 58.994 36.000 0.00 0.00 39.77 3.55
32 33 5.694231 TTCAACAAATGAGATGGACAGTG 57.306 39.130 0.00 0.00 39.77 3.66
33 34 3.503363 TCAACAAATGAGATGGACAGTGC 59.497 43.478 0.00 0.00 33.04 4.40
34 35 3.430042 ACAAATGAGATGGACAGTGCT 57.570 42.857 0.00 0.00 0.00 4.40
35 36 3.079578 ACAAATGAGATGGACAGTGCTG 58.920 45.455 0.00 0.00 0.00 4.41
36 37 1.747709 AATGAGATGGACAGTGCTGC 58.252 50.000 0.00 0.00 0.00 5.25
37 38 0.910338 ATGAGATGGACAGTGCTGCT 59.090 50.000 0.00 0.00 0.00 4.24
38 39 1.560505 TGAGATGGACAGTGCTGCTA 58.439 50.000 0.00 0.00 0.00 3.49
39 40 2.113807 TGAGATGGACAGTGCTGCTAT 58.886 47.619 0.00 0.00 0.00 2.97
40 41 2.159000 TGAGATGGACAGTGCTGCTATG 60.159 50.000 0.00 2.01 0.00 2.23
41 42 2.102084 GAGATGGACAGTGCTGCTATGA 59.898 50.000 10.83 0.00 0.00 2.15
42 43 2.502947 AGATGGACAGTGCTGCTATGAA 59.497 45.455 10.83 0.00 0.00 2.57
43 44 3.136077 AGATGGACAGTGCTGCTATGAAT 59.864 43.478 10.83 3.08 0.00 2.57
44 45 2.910199 TGGACAGTGCTGCTATGAATC 58.090 47.619 10.83 0.76 0.00 2.52
45 46 2.236893 TGGACAGTGCTGCTATGAATCA 59.763 45.455 10.83 0.00 0.00 2.57
46 47 3.273434 GGACAGTGCTGCTATGAATCAA 58.727 45.455 10.83 0.00 0.00 2.57
47 48 3.881688 GGACAGTGCTGCTATGAATCAAT 59.118 43.478 10.83 0.00 0.00 2.57
48 49 4.337555 GGACAGTGCTGCTATGAATCAATT 59.662 41.667 10.83 0.00 0.00 2.32
49 50 5.496133 ACAGTGCTGCTATGAATCAATTC 57.504 39.130 10.83 0.00 37.31 2.17
60 61 4.038271 TGAATCAATTCAGAGCTTGGGT 57.962 40.909 1.30 0.00 41.51 4.51
61 62 4.012374 TGAATCAATTCAGAGCTTGGGTC 58.988 43.478 1.30 0.00 41.51 4.46
62 63 2.099141 TCAATTCAGAGCTTGGGTCG 57.901 50.000 0.00 0.00 35.00 4.79
63 64 0.449388 CAATTCAGAGCTTGGGTCGC 59.551 55.000 0.00 0.00 35.00 5.19
64 65 0.326264 AATTCAGAGCTTGGGTCGCT 59.674 50.000 0.00 0.00 41.15 4.93
65 66 0.392193 ATTCAGAGCTTGGGTCGCTG 60.392 55.000 0.00 0.00 37.96 5.18
66 67 1.471829 TTCAGAGCTTGGGTCGCTGA 61.472 55.000 0.00 0.00 37.96 4.26
67 68 1.220206 CAGAGCTTGGGTCGCTGAT 59.780 57.895 0.00 0.00 37.96 2.90
68 69 1.088340 CAGAGCTTGGGTCGCTGATG 61.088 60.000 0.00 0.00 37.96 3.07
69 70 1.817099 GAGCTTGGGTCGCTGATGG 60.817 63.158 0.00 0.00 37.96 3.51
70 71 2.825836 GCTTGGGTCGCTGATGGG 60.826 66.667 0.00 0.00 0.00 4.00
71 72 2.671070 CTTGGGTCGCTGATGGGT 59.329 61.111 0.00 0.00 0.00 4.51
72 73 1.002134 CTTGGGTCGCTGATGGGTT 60.002 57.895 0.00 0.00 0.00 4.11
73 74 1.303236 TTGGGTCGCTGATGGGTTG 60.303 57.895 0.00 0.00 0.00 3.77
74 75 2.063015 TTGGGTCGCTGATGGGTTGT 62.063 55.000 0.00 0.00 0.00 3.32
75 76 2.040544 GGGTCGCTGATGGGTTGTG 61.041 63.158 0.00 0.00 0.00 3.33
76 77 2.040544 GGTCGCTGATGGGTTGTGG 61.041 63.158 0.00 0.00 0.00 4.17
77 78 1.302511 GTCGCTGATGGGTTGTGGT 60.303 57.895 0.00 0.00 0.00 4.16
78 79 1.003839 TCGCTGATGGGTTGTGGTC 60.004 57.895 0.00 0.00 0.00 4.02
79 80 2.040544 CGCTGATGGGTTGTGGTCC 61.041 63.158 0.00 0.00 0.00 4.46
80 81 1.380302 GCTGATGGGTTGTGGTCCT 59.620 57.895 0.00 0.00 0.00 3.85
81 82 0.251341 GCTGATGGGTTGTGGTCCTT 60.251 55.000 0.00 0.00 0.00 3.36
82 83 1.538047 CTGATGGGTTGTGGTCCTTG 58.462 55.000 0.00 0.00 0.00 3.61
83 84 1.073763 CTGATGGGTTGTGGTCCTTGA 59.926 52.381 0.00 0.00 0.00 3.02
84 85 1.496857 TGATGGGTTGTGGTCCTTGAA 59.503 47.619 0.00 0.00 0.00 2.69
85 86 2.091610 TGATGGGTTGTGGTCCTTGAAA 60.092 45.455 0.00 0.00 0.00 2.69
86 87 1.770294 TGGGTTGTGGTCCTTGAAAC 58.230 50.000 0.00 0.00 0.00 2.78
87 88 1.006043 TGGGTTGTGGTCCTTGAAACA 59.994 47.619 0.00 0.00 0.00 2.83
88 89 2.104170 GGGTTGTGGTCCTTGAAACAA 58.896 47.619 0.00 0.00 0.00 2.83
93 94 4.383850 TGTGGTCCTTGAAACAACAATG 57.616 40.909 0.00 0.00 27.59 2.82
94 95 4.019858 TGTGGTCCTTGAAACAACAATGA 58.980 39.130 0.00 0.00 27.59 2.57
95 96 4.648762 TGTGGTCCTTGAAACAACAATGAT 59.351 37.500 0.00 0.00 27.59 2.45
96 97 5.830457 TGTGGTCCTTGAAACAACAATGATA 59.170 36.000 0.00 0.00 27.59 2.15
97 98 6.493115 TGTGGTCCTTGAAACAACAATGATAT 59.507 34.615 0.00 0.00 27.59 1.63
98 99 6.808212 GTGGTCCTTGAAACAACAATGATATG 59.192 38.462 0.00 0.00 30.18 1.78
99 100 5.807011 GGTCCTTGAAACAACAATGATATGC 59.193 40.000 0.00 0.00 30.18 3.14
100 101 6.389091 GTCCTTGAAACAACAATGATATGCA 58.611 36.000 0.00 0.00 30.18 3.96
101 102 7.037438 GTCCTTGAAACAACAATGATATGCAT 58.963 34.615 3.79 3.79 39.43 3.96
102 103 8.190122 GTCCTTGAAACAACAATGATATGCATA 58.810 33.333 9.27 9.27 35.78 3.14
103 104 8.747471 TCCTTGAAACAACAATGATATGCATAA 58.253 29.630 11.13 0.00 35.78 1.90
104 105 9.027129 CCTTGAAACAACAATGATATGCATAAG 57.973 33.333 11.13 0.00 35.78 1.73
105 106 9.577110 CTTGAAACAACAATGATATGCATAAGT 57.423 29.630 11.13 0.00 35.78 2.24
106 107 8.914328 TGAAACAACAATGATATGCATAAGTG 57.086 30.769 11.13 7.38 35.78 3.16
107 108 8.522003 TGAAACAACAATGATATGCATAAGTGT 58.478 29.630 11.13 8.05 35.78 3.55
108 109 9.357652 GAAACAACAATGATATGCATAAGTGTT 57.642 29.630 15.11 15.11 36.42 3.32
111 112 8.692110 CAACAATGATATGCATAAGTGTTGTT 57.308 30.769 27.66 25.28 42.63 2.83
112 113 8.800972 CAACAATGATATGCATAAGTGTTGTTC 58.199 33.333 27.66 14.55 42.63 3.18
113 114 8.054152 ACAATGATATGCATAAGTGTTGTTCA 57.946 30.769 11.13 7.62 35.78 3.18
114 115 8.689061 ACAATGATATGCATAAGTGTTGTTCAT 58.311 29.630 11.13 9.61 35.78 2.57
115 116 9.524106 CAATGATATGCATAAGTGTTGTTCATT 57.476 29.630 11.13 14.66 35.78 2.57
149 150 9.715121 TTTCTTTTATCTCGGTTGTTATGTACT 57.285 29.630 0.00 0.00 0.00 2.73
155 156 9.570468 TTATCTCGGTTGTTATGTACTATCTCT 57.430 33.333 0.00 0.00 0.00 3.10
156 157 7.876936 TCTCGGTTGTTATGTACTATCTCTT 57.123 36.000 0.00 0.00 0.00 2.85
157 158 8.969260 TCTCGGTTGTTATGTACTATCTCTTA 57.031 34.615 0.00 0.00 0.00 2.10
158 159 9.570468 TCTCGGTTGTTATGTACTATCTCTTAT 57.430 33.333 0.00 0.00 0.00 1.73
180 181 9.965824 CTTATTTTGGTTCTTATCAACAAGTGT 57.034 29.630 0.00 0.00 0.00 3.55
185 186 9.959749 TTTGGTTCTTATCAACAAGTGTTAATC 57.040 29.630 0.00 0.00 36.32 1.75
186 187 7.802738 TGGTTCTTATCAACAAGTGTTAATCG 58.197 34.615 0.00 0.00 36.32 3.34
187 188 7.442969 TGGTTCTTATCAACAAGTGTTAATCGT 59.557 33.333 0.00 0.00 36.32 3.73
188 189 8.287503 GGTTCTTATCAACAAGTGTTAATCGTT 58.712 33.333 0.00 0.00 36.32 3.85
189 190 9.659830 GTTCTTATCAACAAGTGTTAATCGTTT 57.340 29.630 0.00 0.00 36.32 3.60
190 191 9.658475 TTCTTATCAACAAGTGTTAATCGTTTG 57.342 29.630 0.00 0.00 36.32 2.93
191 192 8.832521 TCTTATCAACAAGTGTTAATCGTTTGT 58.167 29.630 0.00 0.00 36.32 2.83
194 195 8.948853 ATCAACAAGTGTTAATCGTTTGTATG 57.051 30.769 0.00 0.00 36.32 2.39
195 196 8.144155 TCAACAAGTGTTAATCGTTTGTATGA 57.856 30.769 0.00 0.00 36.32 2.15
196 197 8.613482 TCAACAAGTGTTAATCGTTTGTATGAA 58.387 29.630 0.00 0.00 36.32 2.57
197 198 8.678510 CAACAAGTGTTAATCGTTTGTATGAAC 58.321 33.333 0.00 0.00 36.32 3.18
198 199 7.921787 ACAAGTGTTAATCGTTTGTATGAACA 58.078 30.769 0.00 0.00 30.79 3.18
199 200 8.399425 ACAAGTGTTAATCGTTTGTATGAACAA 58.601 29.630 0.00 0.00 43.85 2.83
200 201 8.891928 CAAGTGTTAATCGTTTGTATGAACAAG 58.108 33.333 0.00 0.00 45.99 3.16
201 202 8.149973 AGTGTTAATCGTTTGTATGAACAAGT 57.850 30.769 0.00 0.00 45.99 3.16
202 203 8.067784 AGTGTTAATCGTTTGTATGAACAAGTG 58.932 33.333 0.00 0.00 45.99 3.16
203 204 7.853929 GTGTTAATCGTTTGTATGAACAAGTGT 59.146 33.333 0.00 0.00 45.99 3.55
204 205 8.399425 TGTTAATCGTTTGTATGAACAAGTGTT 58.601 29.630 0.00 0.00 45.99 3.32
205 206 8.678510 GTTAATCGTTTGTATGAACAAGTGTTG 58.321 33.333 0.42 0.00 45.99 3.33
206 207 5.804692 TCGTTTGTATGAACAAGTGTTGT 57.195 34.783 0.42 0.00 45.99 3.32
216 217 3.481112 ACAAGTGTTGTTTCGGTTGTC 57.519 42.857 0.00 0.00 42.22 3.18
217 218 2.814919 ACAAGTGTTGTTTCGGTTGTCA 59.185 40.909 0.00 0.00 42.22 3.58
218 219 3.168193 CAAGTGTTGTTTCGGTTGTCAC 58.832 45.455 0.00 0.00 0.00 3.67
219 220 2.706890 AGTGTTGTTTCGGTTGTCACT 58.293 42.857 0.00 0.00 0.00 3.41
220 221 3.864243 AGTGTTGTTTCGGTTGTCACTA 58.136 40.909 0.00 0.00 33.78 2.74
221 222 4.448210 AGTGTTGTTTCGGTTGTCACTAT 58.552 39.130 0.00 0.00 33.78 2.12
222 223 4.879545 AGTGTTGTTTCGGTTGTCACTATT 59.120 37.500 0.00 0.00 33.78 1.73
223 224 5.007332 AGTGTTGTTTCGGTTGTCACTATTC 59.993 40.000 0.00 0.00 33.78 1.75
224 225 5.007332 GTGTTGTTTCGGTTGTCACTATTCT 59.993 40.000 0.00 0.00 0.00 2.40
225 226 5.007234 TGTTGTTTCGGTTGTCACTATTCTG 59.993 40.000 0.00 0.00 0.00 3.02
226 227 4.699637 TGTTTCGGTTGTCACTATTCTGT 58.300 39.130 0.00 0.00 0.00 3.41
227 228 5.845103 TGTTTCGGTTGTCACTATTCTGTA 58.155 37.500 0.00 0.00 0.00 2.74
228 229 6.282167 TGTTTCGGTTGTCACTATTCTGTAA 58.718 36.000 0.00 0.00 0.00 2.41
229 230 6.932400 TGTTTCGGTTGTCACTATTCTGTAAT 59.068 34.615 0.00 0.00 0.00 1.89
230 231 7.442969 TGTTTCGGTTGTCACTATTCTGTAATT 59.557 33.333 0.00 0.00 0.00 1.40
231 232 7.591006 TTCGGTTGTCACTATTCTGTAATTC 57.409 36.000 0.00 0.00 0.00 2.17
232 233 5.803461 TCGGTTGTCACTATTCTGTAATTCG 59.197 40.000 0.00 0.00 0.00 3.34
233 234 5.575606 CGGTTGTCACTATTCTGTAATTCGT 59.424 40.000 0.00 0.00 0.00 3.85
234 235 6.090358 CGGTTGTCACTATTCTGTAATTCGTT 59.910 38.462 0.00 0.00 0.00 3.85
235 236 7.359765 CGGTTGTCACTATTCTGTAATTCGTTT 60.360 37.037 0.00 0.00 0.00 3.60
236 237 7.744715 GGTTGTCACTATTCTGTAATTCGTTTG 59.255 37.037 0.00 0.00 0.00 2.93
237 238 7.956420 TGTCACTATTCTGTAATTCGTTTGT 57.044 32.000 0.00 0.00 0.00 2.83
238 239 9.478768 TTGTCACTATTCTGTAATTCGTTTGTA 57.521 29.630 0.00 0.00 0.00 2.41
239 240 9.647797 TGTCACTATTCTGTAATTCGTTTGTAT 57.352 29.630 0.00 0.00 0.00 2.29
240 241 9.901724 GTCACTATTCTGTAATTCGTTTGTATG 57.098 33.333 0.00 0.00 0.00 2.39
241 242 9.863845 TCACTATTCTGTAATTCGTTTGTATGA 57.136 29.630 0.00 0.00 0.00 2.15
247 248 9.672086 TTCTGTAATTCGTTTGTATGAAAAAGG 57.328 29.630 0.00 0.00 33.22 3.11
248 249 8.293867 TCTGTAATTCGTTTGTATGAAAAAGGG 58.706 33.333 0.00 0.00 33.22 3.95
249 250 7.942990 TGTAATTCGTTTGTATGAAAAAGGGT 58.057 30.769 0.00 0.00 33.22 4.34
250 251 8.414778 TGTAATTCGTTTGTATGAAAAAGGGTT 58.585 29.630 0.00 0.00 33.22 4.11
251 252 9.896263 GTAATTCGTTTGTATGAAAAAGGGTTA 57.104 29.630 0.00 0.00 33.22 2.85
253 254 8.980143 ATTCGTTTGTATGAAAAAGGGTTATG 57.020 30.769 0.00 0.00 33.22 1.90
254 255 7.513371 TCGTTTGTATGAAAAAGGGTTATGT 57.487 32.000 0.00 0.00 0.00 2.29
255 256 7.364200 TCGTTTGTATGAAAAAGGGTTATGTG 58.636 34.615 0.00 0.00 0.00 3.21
256 257 7.228906 TCGTTTGTATGAAAAAGGGTTATGTGA 59.771 33.333 0.00 0.00 0.00 3.58
257 258 7.863375 CGTTTGTATGAAAAAGGGTTATGTGAA 59.137 33.333 0.00 0.00 0.00 3.18
258 259 8.974408 GTTTGTATGAAAAAGGGTTATGTGAAC 58.026 33.333 0.00 0.00 0.00 3.18
259 260 7.825331 TGTATGAAAAAGGGTTATGTGAACA 57.175 32.000 0.00 0.00 0.00 3.18
260 261 8.239038 TGTATGAAAAAGGGTTATGTGAACAA 57.761 30.769 0.00 0.00 0.00 2.83
261 262 8.356657 TGTATGAAAAAGGGTTATGTGAACAAG 58.643 33.333 0.00 0.00 0.00 3.16
262 263 6.783708 TGAAAAAGGGTTATGTGAACAAGT 57.216 33.333 0.00 0.00 0.00 3.16
263 264 6.568869 TGAAAAAGGGTTATGTGAACAAGTG 58.431 36.000 0.00 0.00 0.00 3.16
264 265 6.153680 TGAAAAAGGGTTATGTGAACAAGTGT 59.846 34.615 0.00 0.00 0.00 3.55
265 266 6.538945 AAAAGGGTTATGTGAACAAGTGTT 57.461 33.333 0.00 0.00 41.64 3.32
266 267 6.538945 AAAGGGTTATGTGAACAAGTGTTT 57.461 33.333 0.00 0.00 38.56 2.83
267 268 6.538945 AAGGGTTATGTGAACAAGTGTTTT 57.461 33.333 0.00 0.00 38.56 2.43
268 269 7.648039 AAGGGTTATGTGAACAAGTGTTTTA 57.352 32.000 0.00 0.00 38.56 1.52
269 270 7.833285 AGGGTTATGTGAACAAGTGTTTTAT 57.167 32.000 0.00 0.00 38.56 1.40
270 271 7.882179 AGGGTTATGTGAACAAGTGTTTTATC 58.118 34.615 0.00 0.00 38.56 1.75
271 272 7.504238 AGGGTTATGTGAACAAGTGTTTTATCA 59.496 33.333 0.00 0.00 38.56 2.15
272 273 8.138712 GGGTTATGTGAACAAGTGTTTTATCAA 58.861 33.333 0.00 0.00 38.56 2.57
273 274 8.964150 GGTTATGTGAACAAGTGTTTTATCAAC 58.036 33.333 0.00 1.89 38.56 3.18
274 275 9.730420 GTTATGTGAACAAGTGTTTTATCAACT 57.270 29.630 0.00 0.00 38.56 3.16
286 287 9.449719 AGTGTTTTATCAACTTATAAGTCCCTG 57.550 33.333 18.28 13.01 38.57 4.45
287 288 9.227777 GTGTTTTATCAACTTATAAGTCCCTGT 57.772 33.333 18.28 0.00 38.57 4.00
294 295 9.802039 ATCAACTTATAAGTCCCTGTAAACAAA 57.198 29.630 18.28 0.00 38.57 2.83
295 296 9.059260 TCAACTTATAAGTCCCTGTAAACAAAC 57.941 33.333 18.28 0.00 38.57 2.93
296 297 8.842280 CAACTTATAAGTCCCTGTAAACAAACA 58.158 33.333 18.28 0.00 38.57 2.83
297 298 9.582648 AACTTATAAGTCCCTGTAAACAAACAT 57.417 29.630 18.28 0.00 38.57 2.71
298 299 9.010029 ACTTATAAGTCCCTGTAAACAAACATG 57.990 33.333 12.50 0.00 32.86 3.21
299 300 4.584327 AAGTCCCTGTAAACAAACATGC 57.416 40.909 0.00 0.00 0.00 4.06
300 301 3.561143 AGTCCCTGTAAACAAACATGCA 58.439 40.909 0.00 0.00 0.00 3.96
301 302 3.569701 AGTCCCTGTAAACAAACATGCAG 59.430 43.478 0.00 0.00 0.00 4.41
302 303 2.890311 TCCCTGTAAACAAACATGCAGG 59.110 45.455 0.00 0.00 45.67 4.85
303 304 3.302365 CCTGTAAACAAACATGCAGGG 57.698 47.619 2.31 0.00 43.32 4.45
304 305 2.890311 CCTGTAAACAAACATGCAGGGA 59.110 45.455 2.31 0.00 43.32 4.20
305 306 3.305335 CCTGTAAACAAACATGCAGGGAC 60.305 47.826 2.31 0.00 43.32 4.46
306 307 3.561143 TGTAAACAAACATGCAGGGACT 58.439 40.909 2.31 0.00 43.88 3.85
307 308 3.568007 TGTAAACAAACATGCAGGGACTC 59.432 43.478 2.31 0.00 34.60 3.36
308 309 1.238439 AACAAACATGCAGGGACTCG 58.762 50.000 2.31 0.00 34.60 4.18
309 310 0.606401 ACAAACATGCAGGGACTCGG 60.606 55.000 2.31 0.00 34.60 4.63
310 311 1.002134 AAACATGCAGGGACTCGGG 60.002 57.895 2.31 0.00 34.60 5.14
311 312 1.488705 AAACATGCAGGGACTCGGGA 61.489 55.000 2.31 0.00 34.60 5.14
312 313 2.185310 AACATGCAGGGACTCGGGAC 62.185 60.000 2.31 0.00 34.60 4.46
313 314 2.039624 ATGCAGGGACTCGGGACT 59.960 61.111 0.00 0.00 34.60 3.85
314 315 1.613630 ATGCAGGGACTCGGGACTT 60.614 57.895 0.00 0.00 34.60 3.01
315 316 0.325296 ATGCAGGGACTCGGGACTTA 60.325 55.000 0.00 0.00 34.60 2.24
316 317 0.325296 TGCAGGGACTCGGGACTTAT 60.325 55.000 0.00 0.00 34.60 1.73
317 318 1.063492 TGCAGGGACTCGGGACTTATA 60.063 52.381 0.00 0.00 34.60 0.98
318 319 2.037144 GCAGGGACTCGGGACTTATAA 58.963 52.381 0.00 0.00 34.60 0.98
319 320 2.036089 GCAGGGACTCGGGACTTATAAG 59.964 54.545 11.05 11.05 34.60 1.73
320 321 3.297736 CAGGGACTCGGGACTTATAAGT 58.702 50.000 18.05 18.05 38.50 2.24
321 322 3.318557 CAGGGACTCGGGACTTATAAGTC 59.681 52.174 29.84 29.84 46.63 3.01
341 342 6.780706 AGTCGATGTAAACAAACAAGTAGG 57.219 37.500 0.00 0.00 32.02 3.18
342 343 5.699458 AGTCGATGTAAACAAACAAGTAGGG 59.301 40.000 0.00 0.00 32.02 3.53
343 344 5.697633 GTCGATGTAAACAAACAAGTAGGGA 59.302 40.000 0.00 0.00 32.02 4.20
344 345 5.697633 TCGATGTAAACAAACAAGTAGGGAC 59.302 40.000 0.00 0.00 32.02 4.46
345 346 5.699458 CGATGTAAACAAACAAGTAGGGACT 59.301 40.000 0.00 0.00 37.59 3.85
347 348 7.385752 CGATGTAAACAAACAAGTAGGGACTTA 59.614 37.037 0.00 0.00 44.39 2.24
348 349 9.227777 GATGTAAACAAACAAGTAGGGACTTAT 57.772 33.333 0.00 0.00 44.39 1.73
349 350 8.385898 TGTAAACAAACAAGTAGGGACTTATG 57.614 34.615 0.00 0.00 44.39 1.90
350 351 8.212312 TGTAAACAAACAAGTAGGGACTTATGA 58.788 33.333 0.00 0.00 44.39 2.15
351 352 7.506328 AAACAAACAAGTAGGGACTTATGAC 57.494 36.000 0.00 0.00 44.39 3.06
352 353 6.435292 ACAAACAAGTAGGGACTTATGACT 57.565 37.500 0.00 0.00 44.39 3.41
353 354 6.838382 ACAAACAAGTAGGGACTTATGACTT 58.162 36.000 0.00 0.00 44.39 3.01
354 355 7.970102 ACAAACAAGTAGGGACTTATGACTTA 58.030 34.615 0.00 0.00 44.39 2.24
355 356 8.603304 ACAAACAAGTAGGGACTTATGACTTAT 58.397 33.333 0.00 0.00 44.39 1.73
399 400 8.265165 GTCCTAGGACTTATTAAACAAACAGG 57.735 38.462 31.12 0.00 41.57 4.00
400 401 7.336176 GTCCTAGGACTTATTAAACAAACAGGG 59.664 40.741 31.12 0.00 41.57 4.45
401 402 5.977489 AGGACTTATTAAACAAACAGGGC 57.023 39.130 0.00 0.00 0.00 5.19
402 403 4.770531 AGGACTTATTAAACAAACAGGGCC 59.229 41.667 0.00 0.00 0.00 5.80
403 404 4.770531 GGACTTATTAAACAAACAGGGCCT 59.229 41.667 0.00 0.00 0.00 5.19
404 405 5.245301 GGACTTATTAAACAAACAGGGCCTT 59.755 40.000 1.32 0.00 0.00 4.35
405 406 6.434965 GGACTTATTAAACAAACAGGGCCTTA 59.565 38.462 1.32 0.00 0.00 2.69
406 407 7.123697 GGACTTATTAAACAAACAGGGCCTTAT 59.876 37.037 1.32 0.00 0.00 1.73
407 408 9.181061 GACTTATTAAACAAACAGGGCCTTATA 57.819 33.333 1.32 0.00 0.00 0.98
408 409 9.536510 ACTTATTAAACAAACAGGGCCTTATAA 57.463 29.630 1.32 0.00 0.00 0.98
410 411 9.536510 TTATTAAACAAACAGGGCCTTATAAGT 57.463 29.630 1.32 0.00 0.00 2.24
411 412 5.977489 AAACAAACAGGGCCTTATAAGTC 57.023 39.130 1.32 0.00 0.00 3.01
412 413 3.606687 ACAAACAGGGCCTTATAAGTCG 58.393 45.455 1.32 0.00 0.00 4.18
413 414 3.262405 ACAAACAGGGCCTTATAAGTCGA 59.738 43.478 1.32 0.00 0.00 4.20
414 415 4.080526 ACAAACAGGGCCTTATAAGTCGAT 60.081 41.667 1.32 0.00 0.00 3.59
415 416 3.753294 ACAGGGCCTTATAAGTCGATG 57.247 47.619 1.32 7.40 0.00 3.84
416 417 3.039011 ACAGGGCCTTATAAGTCGATGT 58.961 45.455 1.32 7.96 0.00 3.06
417 418 4.220724 ACAGGGCCTTATAAGTCGATGTA 58.779 43.478 1.32 0.00 0.00 2.29
418 419 4.652421 ACAGGGCCTTATAAGTCGATGTAA 59.348 41.667 1.32 0.00 0.00 2.41
419 420 5.129815 ACAGGGCCTTATAAGTCGATGTAAA 59.870 40.000 1.32 0.00 0.00 2.01
420 421 5.465724 CAGGGCCTTATAAGTCGATGTAAAC 59.534 44.000 1.32 0.00 0.00 2.01
421 422 5.129815 AGGGCCTTATAAGTCGATGTAAACA 59.870 40.000 11.50 0.00 0.00 2.83
422 423 5.818857 GGGCCTTATAAGTCGATGTAAACAA 59.181 40.000 11.50 0.00 0.00 2.83
423 424 6.316890 GGGCCTTATAAGTCGATGTAAACAAA 59.683 38.462 11.50 0.00 0.00 2.83
424 425 7.184779 GGCCTTATAAGTCGATGTAAACAAAC 58.815 38.462 11.50 0.00 0.00 2.93
425 426 7.148373 GGCCTTATAAGTCGATGTAAACAAACA 60.148 37.037 11.50 0.00 0.00 2.83
426 427 7.903431 GCCTTATAAGTCGATGTAAACAAACAG 59.097 37.037 11.50 0.00 31.70 3.16
427 428 8.388103 CCTTATAAGTCGATGTAAACAAACAGG 58.612 37.037 11.50 0.00 31.70 4.00
428 429 8.836268 TTATAAGTCGATGTAAACAAACAGGT 57.164 30.769 0.00 0.00 31.70 4.00
429 430 9.926158 TTATAAGTCGATGTAAACAAACAGGTA 57.074 29.630 0.00 0.00 31.70 3.08
430 431 6.780706 AAGTCGATGTAAACAAACAGGTAG 57.219 37.500 0.00 0.00 31.70 3.18
431 432 5.235516 AGTCGATGTAAACAAACAGGTAGG 58.764 41.667 0.00 0.00 31.70 3.18
432 433 4.390909 GTCGATGTAAACAAACAGGTAGGG 59.609 45.833 0.00 0.00 31.70 3.53
433 434 4.283978 TCGATGTAAACAAACAGGTAGGGA 59.716 41.667 0.00 0.00 31.70 4.20
434 435 4.390909 CGATGTAAACAAACAGGTAGGGAC 59.609 45.833 0.00 0.00 31.70 4.46
435 436 5.557866 GATGTAAACAAACAGGTAGGGACT 58.442 41.667 0.00 0.00 35.89 3.85
436 437 5.376756 TGTAAACAAACAGGTAGGGACTT 57.623 39.130 0.00 0.00 41.75 3.01
437 438 6.497624 TGTAAACAAACAGGTAGGGACTTA 57.502 37.500 0.00 0.00 41.75 2.24
438 439 7.081857 TGTAAACAAACAGGTAGGGACTTAT 57.918 36.000 0.00 0.00 41.75 1.73
439 440 6.938030 TGTAAACAAACAGGTAGGGACTTATG 59.062 38.462 0.00 0.00 41.75 1.90
440 441 5.836024 AACAAACAGGTAGGGACTTATGA 57.164 39.130 0.00 0.00 41.75 2.15
441 442 5.161943 ACAAACAGGTAGGGACTTATGAC 57.838 43.478 0.00 0.00 41.75 3.06
442 443 4.844655 ACAAACAGGTAGGGACTTATGACT 59.155 41.667 0.00 0.00 41.75 3.41
443 444 5.309806 ACAAACAGGTAGGGACTTATGACTT 59.690 40.000 0.00 0.00 41.75 3.01
444 445 6.499350 ACAAACAGGTAGGGACTTATGACTTA 59.501 38.462 0.00 0.00 41.75 2.24
445 446 7.182206 ACAAACAGGTAGGGACTTATGACTTAT 59.818 37.037 0.00 0.00 41.75 1.73
446 447 8.701895 CAAACAGGTAGGGACTTATGACTTATA 58.298 37.037 0.00 0.00 41.75 0.98
447 448 8.849543 AACAGGTAGGGACTTATGACTTATAA 57.150 34.615 0.00 0.00 41.75 0.98
489 490 8.265165 GTCCTAGGACTTATTAAACAAACAGG 57.735 38.462 31.12 0.00 41.57 4.00
490 491 7.336176 GTCCTAGGACTTATTAAACAAACAGGG 59.664 40.741 31.12 0.00 41.57 4.45
491 492 5.977489 AGGACTTATTAAACAAACAGGGC 57.023 39.130 0.00 0.00 0.00 5.19
603 604 3.213160 AGGAAGAGGAAACCTGGAGAT 57.787 47.619 0.00 0.00 31.76 2.75
665 675 1.152860 TGGTGTCGTTGCCATTGGT 60.153 52.632 4.26 0.00 0.00 3.67
666 676 1.169661 TGGTGTCGTTGCCATTGGTC 61.170 55.000 4.26 0.00 0.00 4.02
667 677 1.169661 GGTGTCGTTGCCATTGGTCA 61.170 55.000 4.26 0.07 0.00 4.02
668 678 0.881118 GTGTCGTTGCCATTGGTCAT 59.119 50.000 4.26 0.00 0.00 3.06
669 679 1.269448 GTGTCGTTGCCATTGGTCATT 59.731 47.619 4.26 0.00 0.00 2.57
670 680 1.269174 TGTCGTTGCCATTGGTCATTG 59.731 47.619 4.26 0.00 0.00 2.82
671 681 0.887247 TCGTTGCCATTGGTCATTGG 59.113 50.000 4.26 7.35 35.52 3.16
684 694 3.361977 ATTGGACAACACGGCGGC 61.362 61.111 13.24 0.00 0.00 6.53
724 734 1.075050 GATGATGGTCCATGGCATCCT 59.925 52.381 22.41 16.02 31.54 3.24
784 813 4.647399 CCACTTCCCTTTGTAAAACCTCAA 59.353 41.667 0.00 0.00 0.00 3.02
800 832 3.576982 ACCTCAAACACGGATTAGAGTCA 59.423 43.478 0.00 0.00 0.00 3.41
817 849 4.208873 AGAGTCAACGTATCGATCGAGTAC 59.791 45.833 23.84 21.00 0.00 2.73
847 879 5.297776 GTGGCACAAATAGCACAAGAGATAT 59.702 40.000 13.86 0.00 44.16 1.63
1654 1695 0.788391 GTGTAGTTGGCTCGAAACGG 59.212 55.000 0.00 0.00 32.65 4.44
1743 1801 1.066071 TGGGTTCGACTGTTTGTGACA 60.066 47.619 0.00 0.00 36.65 3.58
1796 1854 5.642686 AGTACTCGATGACTTAAGCTTGAC 58.357 41.667 9.86 0.00 0.00 3.18
1830 4569 5.963176 AAATTGACTGTGTGCATCATGTA 57.037 34.783 0.00 0.00 0.00 2.29
1934 4673 3.953201 GCCATAGCTGATGTTTGGC 57.047 52.632 0.00 1.62 45.31 4.52
1937 4676 2.646930 CCATAGCTGATGTTTGGCTGA 58.353 47.619 0.00 0.00 37.50 4.26
1938 4677 3.220110 CCATAGCTGATGTTTGGCTGAT 58.780 45.455 0.00 0.00 37.50 2.90
1939 4678 4.392047 CCATAGCTGATGTTTGGCTGATA 58.608 43.478 0.00 0.00 37.50 2.15
1940 4679 4.823442 CCATAGCTGATGTTTGGCTGATAA 59.177 41.667 0.00 0.00 37.50 1.75
1941 4680 5.300034 CCATAGCTGATGTTTGGCTGATAAA 59.700 40.000 0.00 0.00 37.50 1.40
1942 4681 6.183360 CCATAGCTGATGTTTGGCTGATAAAA 60.183 38.462 0.00 0.00 37.50 1.52
1943 4682 5.726980 AGCTGATGTTTGGCTGATAAAAA 57.273 34.783 0.00 0.00 34.82 1.94
1973 4712 8.992835 CATCTAGATGTGCTATAGTTATTGCA 57.007 34.615 22.42 4.52 40.96 4.08
1984 4723 9.389755 TGCTATAGTTATTGCACATTTAAGTGA 57.610 29.630 4.81 0.00 42.05 3.41
1985 4724 9.651718 GCTATAGTTATTGCACATTTAAGTGAC 57.348 33.333 4.81 0.00 42.05 3.67
1988 4727 7.744087 AGTTATTGCACATTTAAGTGACTCA 57.256 32.000 4.81 0.00 42.05 3.41
1989 4728 8.165239 AGTTATTGCACATTTAAGTGACTCAA 57.835 30.769 4.81 6.01 42.05 3.02
1990 4729 8.796475 AGTTATTGCACATTTAAGTGACTCAAT 58.204 29.630 4.81 11.73 42.05 2.57
1991 4730 8.853345 GTTATTGCACATTTAAGTGACTCAATG 58.147 33.333 13.19 13.19 42.05 2.82
1992 4731 6.631971 TTGCACATTTAAGTGACTCAATGA 57.368 33.333 18.94 0.84 42.05 2.57
1993 4732 6.631971 TGCACATTTAAGTGACTCAATGAA 57.368 33.333 18.94 6.41 42.05 2.57
1994 4733 7.036996 TGCACATTTAAGTGACTCAATGAAA 57.963 32.000 18.94 0.00 42.05 2.69
1995 4734 6.917477 TGCACATTTAAGTGACTCAATGAAAC 59.083 34.615 18.94 10.80 42.05 2.78
1996 4735 7.141363 GCACATTTAAGTGACTCAATGAAACT 58.859 34.615 18.94 0.57 42.05 2.66
1997 4736 8.289618 GCACATTTAAGTGACTCAATGAAACTA 58.710 33.333 18.94 0.00 42.05 2.24
1998 4737 9.817365 CACATTTAAGTGACTCAATGAAACTAG 57.183 33.333 18.94 0.00 42.05 2.57
1999 4738 9.778741 ACATTTAAGTGACTCAATGAAACTAGA 57.221 29.630 18.94 0.00 32.07 2.43
2026 4765 5.393902 AAAGACAAAAGAAAATGCTTGCG 57.606 34.783 0.00 0.00 0.00 4.85
2027 4766 2.796593 AGACAAAAGAAAATGCTTGCGC 59.203 40.909 0.00 0.00 0.00 6.09
2028 4767 1.522258 ACAAAAGAAAATGCTTGCGCG 59.478 42.857 0.00 0.00 39.65 6.86
2029 4768 1.786004 CAAAAGAAAATGCTTGCGCGA 59.214 42.857 12.10 0.00 39.65 5.87
2030 4769 2.132740 AAAGAAAATGCTTGCGCGAA 57.867 40.000 12.10 0.00 39.65 4.70
2031 4770 2.352503 AAGAAAATGCTTGCGCGAAT 57.647 40.000 12.10 0.00 39.65 3.34
2032 4771 1.900237 AGAAAATGCTTGCGCGAATC 58.100 45.000 12.10 0.00 39.65 2.52
2033 4772 1.470098 AGAAAATGCTTGCGCGAATCT 59.530 42.857 12.10 0.00 39.65 2.40
2034 4773 2.095059 AGAAAATGCTTGCGCGAATCTT 60.095 40.909 12.10 0.00 39.65 2.40
2035 4774 3.126858 AGAAAATGCTTGCGCGAATCTTA 59.873 39.130 12.10 0.00 39.65 2.10
2036 4775 2.744787 AATGCTTGCGCGAATCTTAG 57.255 45.000 12.10 0.00 39.65 2.18
2037 4776 0.305922 ATGCTTGCGCGAATCTTAGC 59.694 50.000 12.10 5.77 39.65 3.09
2038 4777 1.018752 TGCTTGCGCGAATCTTAGCA 61.019 50.000 12.10 9.13 39.65 3.49
2039 4778 0.305922 GCTTGCGCGAATCTTAGCAT 59.694 50.000 12.10 0.00 39.50 3.79
2040 4779 1.526887 GCTTGCGCGAATCTTAGCATA 59.473 47.619 12.10 0.00 39.50 3.14
2041 4780 2.032894 GCTTGCGCGAATCTTAGCATAA 60.033 45.455 12.10 0.00 39.50 1.90
2042 4781 3.546020 GCTTGCGCGAATCTTAGCATAAA 60.546 43.478 12.10 0.00 39.50 1.40
2043 4782 4.587306 CTTGCGCGAATCTTAGCATAAAA 58.413 39.130 12.10 0.00 39.50 1.52
2044 4783 4.811555 TGCGCGAATCTTAGCATAAAAT 57.188 36.364 12.10 0.00 34.39 1.82
2045 4784 4.772434 TGCGCGAATCTTAGCATAAAATC 58.228 39.130 12.10 0.00 34.39 2.17
2046 4785 4.272261 TGCGCGAATCTTAGCATAAAATCA 59.728 37.500 12.10 0.00 34.39 2.57
2047 4786 5.204833 GCGCGAATCTTAGCATAAAATCAA 58.795 37.500 12.10 0.00 0.00 2.57
2048 4787 5.853282 GCGCGAATCTTAGCATAAAATCAAT 59.147 36.000 12.10 0.00 0.00 2.57
2049 4788 6.183359 GCGCGAATCTTAGCATAAAATCAATG 60.183 38.462 12.10 0.00 0.00 2.82
2050 4789 7.071414 CGCGAATCTTAGCATAAAATCAATGA 58.929 34.615 0.00 0.00 0.00 2.57
2051 4790 7.058806 CGCGAATCTTAGCATAAAATCAATGAC 59.941 37.037 0.00 0.00 0.00 3.06
2052 4791 7.857389 GCGAATCTTAGCATAAAATCAATGACA 59.143 33.333 0.00 0.00 0.00 3.58
2053 4792 9.888878 CGAATCTTAGCATAAAATCAATGACAT 57.111 29.630 0.00 0.00 0.00 3.06
2059 4798 9.851686 TTAGCATAAAATCAATGACATAGGACT 57.148 29.630 0.00 0.00 0.00 3.85
2060 4799 8.757982 AGCATAAAATCAATGACATAGGACTT 57.242 30.769 0.00 0.00 0.00 3.01
2061 4800 9.851686 AGCATAAAATCAATGACATAGGACTTA 57.148 29.630 0.00 0.00 0.00 2.24
2066 4805 9.911788 AAAATCAATGACATAGGACTTAGATGT 57.088 29.630 0.00 0.00 36.52 3.06
2067 4806 8.899427 AATCAATGACATAGGACTTAGATGTG 57.101 34.615 0.00 0.00 33.99 3.21
2068 4807 6.283694 TCAATGACATAGGACTTAGATGTGC 58.716 40.000 0.00 0.00 33.99 4.57
2069 4808 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
2070 4809 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
2071 4810 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
2072 4811 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
2073 4812 7.966812 TGACATAGGACTTAGATGTGCAATAT 58.033 34.615 0.00 0.00 33.99 1.28
2074 4813 8.432013 TGACATAGGACTTAGATGTGCAATATT 58.568 33.333 0.00 0.00 33.99 1.28
2075 4814 9.277783 GACATAGGACTTAGATGTGCAATATTT 57.722 33.333 0.00 0.00 33.99 1.40
2080 4819 7.659390 AGGACTTAGATGTGCAATATTTAGAGC 59.341 37.037 0.00 0.00 0.00 4.09
2081 4820 7.442364 GGACTTAGATGTGCAATATTTAGAGCA 59.558 37.037 0.00 0.00 34.10 4.26
2082 4821 8.915057 ACTTAGATGTGCAATATTTAGAGCAT 57.085 30.769 1.97 0.00 39.43 3.79
2139 4878 8.422577 AAAAAGCAGGGAGTTATGATAAAAGT 57.577 30.769 0.00 0.00 0.00 2.66
2140 4879 7.396540 AAAGCAGGGAGTTATGATAAAAGTG 57.603 36.000 0.00 0.00 0.00 3.16
2141 4880 6.313519 AGCAGGGAGTTATGATAAAAGTGA 57.686 37.500 0.00 0.00 0.00 3.41
2142 4881 6.116126 AGCAGGGAGTTATGATAAAAGTGAC 58.884 40.000 0.00 0.00 0.00 3.67
2143 4882 5.880332 GCAGGGAGTTATGATAAAAGTGACA 59.120 40.000 0.00 0.00 0.00 3.58
2144 4883 6.374333 GCAGGGAGTTATGATAAAAGTGACAA 59.626 38.462 0.00 0.00 0.00 3.18
2145 4884 7.094377 GCAGGGAGTTATGATAAAAGTGACAAA 60.094 37.037 0.00 0.00 0.00 2.83
2146 4885 8.454106 CAGGGAGTTATGATAAAAGTGACAAAG 58.546 37.037 0.00 0.00 0.00 2.77
2147 4886 8.383175 AGGGAGTTATGATAAAAGTGACAAAGA 58.617 33.333 0.00 0.00 0.00 2.52
2148 4887 9.178758 GGGAGTTATGATAAAAGTGACAAAGAT 57.821 33.333 0.00 0.00 0.00 2.40
2149 4888 9.994432 GGAGTTATGATAAAAGTGACAAAGATG 57.006 33.333 0.00 0.00 0.00 2.90
2152 4891 9.994432 GTTATGATAAAAGTGACAAAGATGAGG 57.006 33.333 0.00 0.00 0.00 3.86
2153 4892 9.739276 TTATGATAAAAGTGACAAAGATGAGGT 57.261 29.630 0.00 0.00 0.00 3.85
2154 4893 7.672983 TGATAAAAGTGACAAAGATGAGGTC 57.327 36.000 0.00 0.00 0.00 3.85
2155 4894 6.655003 TGATAAAAGTGACAAAGATGAGGTCC 59.345 38.462 0.00 0.00 0.00 4.46
2156 4895 2.751166 AGTGACAAAGATGAGGTCCG 57.249 50.000 0.00 0.00 0.00 4.79
2157 4896 2.248248 AGTGACAAAGATGAGGTCCGA 58.752 47.619 0.00 0.00 0.00 4.55
2158 4897 2.632996 AGTGACAAAGATGAGGTCCGAA 59.367 45.455 0.00 0.00 0.00 4.30
2159 4898 2.996621 GTGACAAAGATGAGGTCCGAAG 59.003 50.000 0.00 0.00 0.00 3.79
2160 4899 2.897326 TGACAAAGATGAGGTCCGAAGA 59.103 45.455 0.00 0.00 0.00 2.87
2161 4900 3.515502 TGACAAAGATGAGGTCCGAAGAT 59.484 43.478 0.00 0.00 0.00 2.40
2162 4901 4.116238 GACAAAGATGAGGTCCGAAGATC 58.884 47.826 0.00 0.00 0.00 2.75
2163 4902 3.515502 ACAAAGATGAGGTCCGAAGATCA 59.484 43.478 0.00 0.00 0.00 2.92
2164 4903 4.020218 ACAAAGATGAGGTCCGAAGATCAA 60.020 41.667 0.00 0.00 0.00 2.57
2165 4904 4.399004 AAGATGAGGTCCGAAGATCAAG 57.601 45.455 0.00 0.00 0.00 3.02
2166 4905 2.697751 AGATGAGGTCCGAAGATCAAGG 59.302 50.000 0.00 0.00 0.00 3.61
2167 4906 2.231716 TGAGGTCCGAAGATCAAGGA 57.768 50.000 0.00 0.00 0.00 3.36
2168 4907 2.536066 TGAGGTCCGAAGATCAAGGAA 58.464 47.619 5.56 0.00 35.60 3.36
2169 4908 2.903784 TGAGGTCCGAAGATCAAGGAAA 59.096 45.455 5.56 0.00 35.60 3.13
2170 4909 3.055819 TGAGGTCCGAAGATCAAGGAAAG 60.056 47.826 5.56 0.00 35.60 2.62
2171 4910 3.173965 AGGTCCGAAGATCAAGGAAAGA 58.826 45.455 5.56 0.00 35.60 2.52
2172 4911 3.583086 AGGTCCGAAGATCAAGGAAAGAA 59.417 43.478 5.56 0.00 35.60 2.52
2173 4912 3.935828 GGTCCGAAGATCAAGGAAAGAAG 59.064 47.826 5.56 0.00 35.60 2.85
2174 4913 4.322801 GGTCCGAAGATCAAGGAAAGAAGA 60.323 45.833 5.56 0.00 35.60 2.87
2175 4914 5.238583 GTCCGAAGATCAAGGAAAGAAGAA 58.761 41.667 5.56 0.00 35.60 2.52
2176 4915 5.350091 GTCCGAAGATCAAGGAAAGAAGAAG 59.650 44.000 5.56 0.00 35.60 2.85
2177 4916 5.012148 TCCGAAGATCAAGGAAAGAAGAAGT 59.988 40.000 0.00 0.00 0.00 3.01
2178 4917 6.210784 TCCGAAGATCAAGGAAAGAAGAAGTA 59.789 38.462 0.00 0.00 0.00 2.24
2179 4918 6.874134 CCGAAGATCAAGGAAAGAAGAAGTAA 59.126 38.462 0.00 0.00 0.00 2.24
2180 4919 7.387948 CCGAAGATCAAGGAAAGAAGAAGTAAA 59.612 37.037 0.00 0.00 0.00 2.01
2181 4920 8.439286 CGAAGATCAAGGAAAGAAGAAGTAAAG 58.561 37.037 0.00 0.00 0.00 1.85
2182 4921 8.628630 AAGATCAAGGAAAGAAGAAGTAAAGG 57.371 34.615 0.00 0.00 0.00 3.11
2183 4922 7.978925 AGATCAAGGAAAGAAGAAGTAAAGGA 58.021 34.615 0.00 0.00 0.00 3.36
2184 4923 8.440771 AGATCAAGGAAAGAAGAAGTAAAGGAA 58.559 33.333 0.00 0.00 0.00 3.36
2185 4924 8.996651 ATCAAGGAAAGAAGAAGTAAAGGAAA 57.003 30.769 0.00 0.00 0.00 3.13
2186 4925 8.817092 TCAAGGAAAGAAGAAGTAAAGGAAAA 57.183 30.769 0.00 0.00 0.00 2.29
2187 4926 8.683615 TCAAGGAAAGAAGAAGTAAAGGAAAAC 58.316 33.333 0.00 0.00 0.00 2.43
2188 4927 8.466798 CAAGGAAAGAAGAAGTAAAGGAAAACA 58.533 33.333 0.00 0.00 0.00 2.83
2189 4928 8.589701 AGGAAAGAAGAAGTAAAGGAAAACAA 57.410 30.769 0.00 0.00 0.00 2.83
2190 4929 8.687242 AGGAAAGAAGAAGTAAAGGAAAACAAG 58.313 33.333 0.00 0.00 0.00 3.16
2191 4930 8.467598 GGAAAGAAGAAGTAAAGGAAAACAAGT 58.532 33.333 0.00 0.00 0.00 3.16
2192 4931 9.856488 GAAAGAAGAAGTAAAGGAAAACAAGTT 57.144 29.630 0.00 0.00 0.00 2.66
2219 4958 7.995463 TTTTAGCAATGGTAAAAGTGACAAC 57.005 32.000 21.82 0.00 39.48 3.32
2220 4959 6.701145 TTAGCAATGGTAAAAGTGACAACA 57.299 33.333 2.04 0.00 0.00 3.33
2221 4960 5.590530 AGCAATGGTAAAAGTGACAACAA 57.409 34.783 0.00 0.00 0.00 2.83
2222 4961 6.160576 AGCAATGGTAAAAGTGACAACAAT 57.839 33.333 0.00 0.00 0.00 2.71
2223 4962 5.984926 AGCAATGGTAAAAGTGACAACAATG 59.015 36.000 0.00 0.00 0.00 2.82
2224 4963 5.177327 GCAATGGTAAAAGTGACAACAATGG 59.823 40.000 0.00 0.00 0.00 3.16
2225 4964 4.927978 TGGTAAAAGTGACAACAATGGG 57.072 40.909 0.00 0.00 0.00 4.00
2226 4965 4.537751 TGGTAAAAGTGACAACAATGGGA 58.462 39.130 0.00 0.00 0.00 4.37
2227 4966 4.339814 TGGTAAAAGTGACAACAATGGGAC 59.660 41.667 0.00 0.00 0.00 4.46
2228 4967 4.261867 GGTAAAAGTGACAACAATGGGACC 60.262 45.833 0.00 0.00 0.00 4.46
2229 4968 1.604604 AAGTGACAACAATGGGACCG 58.395 50.000 0.00 0.00 0.00 4.79
2230 4969 0.762418 AGTGACAACAATGGGACCGA 59.238 50.000 0.00 0.00 0.00 4.69
2231 4970 1.142060 AGTGACAACAATGGGACCGAA 59.858 47.619 0.00 0.00 0.00 4.30
2232 4971 1.535462 GTGACAACAATGGGACCGAAG 59.465 52.381 0.00 0.00 0.00 3.79
2233 4972 0.521735 GACAACAATGGGACCGAAGC 59.478 55.000 0.00 0.00 0.00 3.86
2234 4973 0.179004 ACAACAATGGGACCGAAGCA 60.179 50.000 0.00 0.00 0.00 3.91
2235 4974 0.523072 CAACAATGGGACCGAAGCAG 59.477 55.000 0.00 0.00 0.00 4.24
2236 4975 0.609131 AACAATGGGACCGAAGCAGG 60.609 55.000 0.00 0.00 37.30 4.85
2237 4976 1.750399 CAATGGGACCGAAGCAGGG 60.750 63.158 0.00 0.00 35.02 4.45
2238 4977 1.923395 AATGGGACCGAAGCAGGGA 60.923 57.895 0.00 0.00 35.02 4.20
2239 4978 1.915078 AATGGGACCGAAGCAGGGAG 61.915 60.000 0.00 0.00 35.02 4.30
2240 4979 4.475135 GGGACCGAAGCAGGGAGC 62.475 72.222 0.00 0.00 46.19 4.70
2315 5392 4.181578 ACTATATGCGAGTTGGTGTTGAC 58.818 43.478 0.00 0.00 0.00 3.18
2344 5421 5.851720 CATGTAGAGTCATGCAGAGGTTAT 58.148 41.667 0.00 0.00 38.65 1.89
2375 5452 8.035394 ACACTCATTATGTGTCGTATCTCTTTT 58.965 33.333 0.00 0.00 44.24 2.27
2478 5556 8.746922 TTTTTGAATTACAGAATGACTCATGC 57.253 30.769 0.00 0.00 39.69 4.06
2523 5602 5.220681 GGTTGTGACTTTCTCAAGAAGTGAC 60.221 44.000 0.64 0.64 35.21 3.67
2596 5685 2.108566 CTCTCATCCTGCCGCTGG 59.891 66.667 9.98 9.98 0.00 4.85
2627 5716 2.501128 CGACCTCCATCGGTGCAT 59.499 61.111 0.00 0.00 37.42 3.96
2633 5722 1.012086 CTCCATCGGTGCATGACAAG 58.988 55.000 0.00 0.00 0.00 3.16
2635 5724 0.448990 CCATCGGTGCATGACAAGTG 59.551 55.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.211485 GTCCATCTCATTTGTTGAATCATTTTT 57.789 29.630 0.00 0.00 32.78 1.94
3 4 8.369424 TGTCCATCTCATTTGTTGAATCATTTT 58.631 29.630 0.00 0.00 32.78 1.82
4 5 7.898918 TGTCCATCTCATTTGTTGAATCATTT 58.101 30.769 0.00 0.00 32.78 2.32
5 6 7.177921 ACTGTCCATCTCATTTGTTGAATCATT 59.822 33.333 0.00 0.00 32.78 2.57
6 7 6.662234 ACTGTCCATCTCATTTGTTGAATCAT 59.338 34.615 0.00 0.00 32.78 2.45
7 8 6.005823 ACTGTCCATCTCATTTGTTGAATCA 58.994 36.000 0.00 0.00 32.78 2.57
8 9 6.320171 CACTGTCCATCTCATTTGTTGAATC 58.680 40.000 0.00 0.00 32.78 2.52
9 10 5.336213 GCACTGTCCATCTCATTTGTTGAAT 60.336 40.000 0.00 0.00 32.78 2.57
10 11 4.022935 GCACTGTCCATCTCATTTGTTGAA 60.023 41.667 0.00 0.00 32.78 2.69
11 12 3.503363 GCACTGTCCATCTCATTTGTTGA 59.497 43.478 0.00 0.00 0.00 3.18
12 13 3.504906 AGCACTGTCCATCTCATTTGTTG 59.495 43.478 0.00 0.00 0.00 3.33
13 14 3.504906 CAGCACTGTCCATCTCATTTGTT 59.495 43.478 0.00 0.00 0.00 2.83
14 15 3.079578 CAGCACTGTCCATCTCATTTGT 58.920 45.455 0.00 0.00 0.00 2.83
15 16 2.159421 GCAGCACTGTCCATCTCATTTG 60.159 50.000 0.00 0.00 0.00 2.32
16 17 2.089980 GCAGCACTGTCCATCTCATTT 58.910 47.619 0.00 0.00 0.00 2.32
17 18 1.281287 AGCAGCACTGTCCATCTCATT 59.719 47.619 0.00 0.00 0.00 2.57
18 19 0.910338 AGCAGCACTGTCCATCTCAT 59.090 50.000 0.00 0.00 0.00 2.90
19 20 1.560505 TAGCAGCACTGTCCATCTCA 58.439 50.000 0.00 0.00 0.00 3.27
20 21 2.102084 TCATAGCAGCACTGTCCATCTC 59.898 50.000 0.00 0.00 0.00 2.75
21 22 2.113807 TCATAGCAGCACTGTCCATCT 58.886 47.619 0.00 0.00 0.00 2.90
22 23 2.609427 TCATAGCAGCACTGTCCATC 57.391 50.000 0.00 0.00 0.00 3.51
23 24 3.118149 TGATTCATAGCAGCACTGTCCAT 60.118 43.478 0.00 0.00 0.00 3.41
24 25 2.236893 TGATTCATAGCAGCACTGTCCA 59.763 45.455 0.00 0.00 0.00 4.02
25 26 2.910199 TGATTCATAGCAGCACTGTCC 58.090 47.619 0.00 0.00 0.00 4.02
26 27 5.065602 TGAATTGATTCATAGCAGCACTGTC 59.934 40.000 2.39 0.00 41.51 3.51
27 28 4.945543 TGAATTGATTCATAGCAGCACTGT 59.054 37.500 2.39 0.00 41.51 3.55
28 29 5.296035 TCTGAATTGATTCATAGCAGCACTG 59.704 40.000 6.85 0.00 44.92 3.66
29 30 5.434408 TCTGAATTGATTCATAGCAGCACT 58.566 37.500 6.85 0.00 44.92 4.40
30 31 5.746307 TCTGAATTGATTCATAGCAGCAC 57.254 39.130 6.85 0.00 44.92 4.40
36 37 5.826737 ACCCAAGCTCTGAATTGATTCATAG 59.173 40.000 12.30 12.30 44.92 2.23
37 38 5.759059 ACCCAAGCTCTGAATTGATTCATA 58.241 37.500 6.85 0.07 44.92 2.15
38 39 4.607239 ACCCAAGCTCTGAATTGATTCAT 58.393 39.130 6.85 0.00 44.92 2.57
39 40 4.012374 GACCCAAGCTCTGAATTGATTCA 58.988 43.478 6.28 6.28 43.94 2.57
40 41 3.064545 CGACCCAAGCTCTGAATTGATTC 59.935 47.826 0.00 0.00 37.31 2.52
41 42 3.012518 CGACCCAAGCTCTGAATTGATT 58.987 45.455 0.00 0.00 0.00 2.57
42 43 2.636830 CGACCCAAGCTCTGAATTGAT 58.363 47.619 0.00 0.00 0.00 2.57
43 44 1.945819 GCGACCCAAGCTCTGAATTGA 60.946 52.381 0.00 0.00 0.00 2.57
44 45 0.449388 GCGACCCAAGCTCTGAATTG 59.551 55.000 0.00 0.00 0.00 2.32
45 46 0.326264 AGCGACCCAAGCTCTGAATT 59.674 50.000 0.00 0.00 41.83 2.17
46 47 0.392193 CAGCGACCCAAGCTCTGAAT 60.392 55.000 0.00 0.00 44.06 2.57
47 48 1.004560 CAGCGACCCAAGCTCTGAA 60.005 57.895 0.00 0.00 44.06 3.02
48 49 1.260538 ATCAGCGACCCAAGCTCTGA 61.261 55.000 1.94 1.94 44.06 3.27
49 50 1.088340 CATCAGCGACCCAAGCTCTG 61.088 60.000 0.00 0.00 44.06 3.35
50 51 1.220206 CATCAGCGACCCAAGCTCT 59.780 57.895 0.00 0.00 44.06 4.09
51 52 1.817099 CCATCAGCGACCCAAGCTC 60.817 63.158 0.00 0.00 44.06 4.09
53 54 2.825836 CCCATCAGCGACCCAAGC 60.826 66.667 0.00 0.00 0.00 4.01
54 55 1.002134 AACCCATCAGCGACCCAAG 60.002 57.895 0.00 0.00 0.00 3.61
55 56 1.303236 CAACCCATCAGCGACCCAA 60.303 57.895 0.00 0.00 0.00 4.12
56 57 2.350895 CAACCCATCAGCGACCCA 59.649 61.111 0.00 0.00 0.00 4.51
57 58 2.040544 CACAACCCATCAGCGACCC 61.041 63.158 0.00 0.00 0.00 4.46
58 59 2.040544 CCACAACCCATCAGCGACC 61.041 63.158 0.00 0.00 0.00 4.79
59 60 1.298859 GACCACAACCCATCAGCGAC 61.299 60.000 0.00 0.00 0.00 5.19
60 61 1.003839 GACCACAACCCATCAGCGA 60.004 57.895 0.00 0.00 0.00 4.93
61 62 2.040544 GGACCACAACCCATCAGCG 61.041 63.158 0.00 0.00 0.00 5.18
62 63 0.251341 AAGGACCACAACCCATCAGC 60.251 55.000 0.00 0.00 0.00 4.26
63 64 1.073763 TCAAGGACCACAACCCATCAG 59.926 52.381 0.00 0.00 0.00 2.90
64 65 1.144691 TCAAGGACCACAACCCATCA 58.855 50.000 0.00 0.00 0.00 3.07
65 66 2.286365 TTCAAGGACCACAACCCATC 57.714 50.000 0.00 0.00 0.00 3.51
66 67 2.316108 GTTTCAAGGACCACAACCCAT 58.684 47.619 0.00 0.00 0.00 4.00
67 68 1.006043 TGTTTCAAGGACCACAACCCA 59.994 47.619 0.00 0.00 0.00 4.51
68 69 1.770294 TGTTTCAAGGACCACAACCC 58.230 50.000 0.00 0.00 0.00 4.11
69 70 2.494073 TGTTGTTTCAAGGACCACAACC 59.506 45.455 17.54 5.36 45.60 3.77
70 71 3.859411 TGTTGTTTCAAGGACCACAAC 57.141 42.857 14.77 14.77 46.12 3.32
71 72 4.464244 TCATTGTTGTTTCAAGGACCACAA 59.536 37.500 0.00 0.00 37.16 3.33
72 73 4.019858 TCATTGTTGTTTCAAGGACCACA 58.980 39.130 0.00 0.00 34.08 4.17
73 74 4.647424 TCATTGTTGTTTCAAGGACCAC 57.353 40.909 0.00 0.00 34.08 4.16
74 75 6.572119 GCATATCATTGTTGTTTCAAGGACCA 60.572 38.462 0.00 0.00 40.08 4.02
75 76 5.807011 GCATATCATTGTTGTTTCAAGGACC 59.193 40.000 0.00 0.00 40.08 4.46
76 77 6.389091 TGCATATCATTGTTGTTTCAAGGAC 58.611 36.000 0.00 0.00 40.08 3.85
77 78 6.587206 TGCATATCATTGTTGTTTCAAGGA 57.413 33.333 0.00 0.00 41.17 3.36
78 79 8.929827 TTATGCATATCATTGTTGTTTCAAGG 57.070 30.769 7.36 0.00 36.63 3.61
79 80 9.577110 ACTTATGCATATCATTGTTGTTTCAAG 57.423 29.630 7.36 0.34 36.63 3.02
80 81 9.356433 CACTTATGCATATCATTGTTGTTTCAA 57.644 29.630 7.36 0.00 36.63 2.69
81 82 8.522003 ACACTTATGCATATCATTGTTGTTTCA 58.478 29.630 7.36 0.00 36.63 2.69
82 83 8.915871 ACACTTATGCATATCATTGTTGTTTC 57.084 30.769 7.36 0.00 36.63 2.78
83 84 9.142515 CAACACTTATGCATATCATTGTTGTTT 57.857 29.630 24.76 7.35 41.71 2.83
84 85 8.692110 CAACACTTATGCATATCATTGTTGTT 57.308 30.769 24.76 16.42 41.71 2.83
86 87 8.692110 AACAACACTTATGCATATCATTGTTG 57.308 30.769 27.78 27.78 46.58 3.33
87 88 8.522003 TGAACAACACTTATGCATATCATTGTT 58.478 29.630 24.29 24.29 35.27 2.83
88 89 8.054152 TGAACAACACTTATGCATATCATTGT 57.946 30.769 7.36 12.48 36.63 2.71
89 90 9.524106 AATGAACAACACTTATGCATATCATTG 57.476 29.630 19.61 16.92 36.63 2.82
123 124 9.715121 AGTACATAACAACCGAGATAAAAGAAA 57.285 29.630 0.00 0.00 0.00 2.52
129 130 9.570468 AGAGATAGTACATAACAACCGAGATAA 57.430 33.333 0.00 0.00 0.00 1.75
130 131 9.570468 AAGAGATAGTACATAACAACCGAGATA 57.430 33.333 0.00 0.00 0.00 1.98
131 132 8.466617 AAGAGATAGTACATAACAACCGAGAT 57.533 34.615 0.00 0.00 0.00 2.75
132 133 7.876936 AAGAGATAGTACATAACAACCGAGA 57.123 36.000 0.00 0.00 0.00 4.04
154 155 9.965824 ACACTTGTTGATAAGAACCAAAATAAG 57.034 29.630 0.00 0.00 0.00 1.73
159 160 9.959749 GATTAACACTTGTTGATAAGAACCAAA 57.040 29.630 4.82 0.00 38.90 3.28
160 161 8.286800 CGATTAACACTTGTTGATAAGAACCAA 58.713 33.333 4.82 0.00 38.90 3.67
161 162 7.442969 ACGATTAACACTTGTTGATAAGAACCA 59.557 33.333 4.82 0.00 38.90 3.67
162 163 7.803724 ACGATTAACACTTGTTGATAAGAACC 58.196 34.615 4.82 0.00 38.90 3.62
163 164 9.659830 AAACGATTAACACTTGTTGATAAGAAC 57.340 29.630 4.82 0.00 38.90 3.01
164 165 9.658475 CAAACGATTAACACTTGTTGATAAGAA 57.342 29.630 4.82 0.00 38.90 2.52
165 166 8.832521 ACAAACGATTAACACTTGTTGATAAGA 58.167 29.630 4.82 0.00 38.90 2.10
169 170 8.779303 TCATACAAACGATTAACACTTGTTGAT 58.221 29.630 4.82 1.98 38.90 2.57
170 171 8.144155 TCATACAAACGATTAACACTTGTTGA 57.856 30.769 4.82 0.00 38.90 3.18
171 172 8.678510 GTTCATACAAACGATTAACACTTGTTG 58.321 33.333 4.82 0.00 38.90 3.33
172 173 8.399425 TGTTCATACAAACGATTAACACTTGTT 58.601 29.630 0.00 0.00 35.72 2.83
173 174 7.921787 TGTTCATACAAACGATTAACACTTGT 58.078 30.769 0.00 0.00 34.71 3.16
174 175 8.775220 TTGTTCATACAAACGATTAACACTTG 57.225 30.769 0.00 0.00 41.15 3.16
175 176 8.617809 ACTTGTTCATACAAACGATTAACACTT 58.382 29.630 0.00 0.00 43.33 3.16
176 177 8.067784 CACTTGTTCATACAAACGATTAACACT 58.932 33.333 0.00 0.00 43.33 3.55
177 178 7.853929 ACACTTGTTCATACAAACGATTAACAC 59.146 33.333 0.00 0.00 43.33 3.32
178 179 7.921787 ACACTTGTTCATACAAACGATTAACA 58.078 30.769 0.00 0.00 43.33 2.41
179 180 8.678510 CAACACTTGTTCATACAAACGATTAAC 58.321 33.333 0.00 0.00 43.33 2.01
180 181 8.399425 ACAACACTTGTTCATACAAACGATTAA 58.601 29.630 0.00 0.00 43.33 1.40
181 182 7.921787 ACAACACTTGTTCATACAAACGATTA 58.078 30.769 0.00 0.00 43.33 1.75
182 183 6.791303 ACAACACTTGTTCATACAAACGATT 58.209 32.000 0.00 0.00 43.33 3.34
183 184 6.371809 ACAACACTTGTTCATACAAACGAT 57.628 33.333 0.00 0.00 43.33 3.73
184 185 5.804692 ACAACACTTGTTCATACAAACGA 57.195 34.783 0.00 0.00 43.33 3.85
197 198 3.119990 AGTGACAACCGAAACAACACTTG 60.120 43.478 0.00 0.00 34.21 3.16
198 199 3.078837 AGTGACAACCGAAACAACACTT 58.921 40.909 0.00 0.00 34.21 3.16
199 200 2.706890 AGTGACAACCGAAACAACACT 58.293 42.857 0.00 0.00 33.29 3.55
200 201 4.806342 ATAGTGACAACCGAAACAACAC 57.194 40.909 0.00 0.00 0.00 3.32
201 202 5.007234 CAGAATAGTGACAACCGAAACAACA 59.993 40.000 0.00 0.00 0.00 3.33
202 203 5.007332 ACAGAATAGTGACAACCGAAACAAC 59.993 40.000 0.00 0.00 0.00 3.32
203 204 5.120399 ACAGAATAGTGACAACCGAAACAA 58.880 37.500 0.00 0.00 0.00 2.83
204 205 4.699637 ACAGAATAGTGACAACCGAAACA 58.300 39.130 0.00 0.00 0.00 2.83
205 206 6.774354 TTACAGAATAGTGACAACCGAAAC 57.226 37.500 0.00 0.00 0.00 2.78
206 207 7.148705 CGAATTACAGAATAGTGACAACCGAAA 60.149 37.037 0.00 0.00 0.00 3.46
207 208 6.309494 CGAATTACAGAATAGTGACAACCGAA 59.691 38.462 0.00 0.00 0.00 4.30
208 209 5.803461 CGAATTACAGAATAGTGACAACCGA 59.197 40.000 0.00 0.00 0.00 4.69
209 210 5.575606 ACGAATTACAGAATAGTGACAACCG 59.424 40.000 0.00 0.00 0.00 4.44
210 211 6.963049 ACGAATTACAGAATAGTGACAACC 57.037 37.500 0.00 0.00 0.00 3.77
211 212 8.280497 ACAAACGAATTACAGAATAGTGACAAC 58.720 33.333 0.00 0.00 0.00 3.32
212 213 8.373048 ACAAACGAATTACAGAATAGTGACAA 57.627 30.769 0.00 0.00 0.00 3.18
213 214 7.956420 ACAAACGAATTACAGAATAGTGACA 57.044 32.000 0.00 0.00 0.00 3.58
214 215 9.901724 CATACAAACGAATTACAGAATAGTGAC 57.098 33.333 0.00 0.00 0.00 3.67
215 216 9.863845 TCATACAAACGAATTACAGAATAGTGA 57.136 29.630 0.00 0.00 0.00 3.41
221 222 9.672086 CCTTTTTCATACAAACGAATTACAGAA 57.328 29.630 0.00 0.00 0.00 3.02
222 223 8.293867 CCCTTTTTCATACAAACGAATTACAGA 58.706 33.333 0.00 0.00 0.00 3.41
223 224 8.079809 ACCCTTTTTCATACAAACGAATTACAG 58.920 33.333 0.00 0.00 0.00 2.74
224 225 7.942990 ACCCTTTTTCATACAAACGAATTACA 58.057 30.769 0.00 0.00 0.00 2.41
225 226 8.806177 AACCCTTTTTCATACAAACGAATTAC 57.194 30.769 0.00 0.00 0.00 1.89
227 228 9.418045 CATAACCCTTTTTCATACAAACGAATT 57.582 29.630 0.00 0.00 0.00 2.17
228 229 8.581578 ACATAACCCTTTTTCATACAAACGAAT 58.418 29.630 0.00 0.00 0.00 3.34
229 230 7.863375 CACATAACCCTTTTTCATACAAACGAA 59.137 33.333 0.00 0.00 0.00 3.85
230 231 7.228906 TCACATAACCCTTTTTCATACAAACGA 59.771 33.333 0.00 0.00 0.00 3.85
231 232 7.364200 TCACATAACCCTTTTTCATACAAACG 58.636 34.615 0.00 0.00 0.00 3.60
232 233 8.974408 GTTCACATAACCCTTTTTCATACAAAC 58.026 33.333 0.00 0.00 0.00 2.93
233 234 8.696374 TGTTCACATAACCCTTTTTCATACAAA 58.304 29.630 0.00 0.00 0.00 2.83
234 235 8.239038 TGTTCACATAACCCTTTTTCATACAA 57.761 30.769 0.00 0.00 0.00 2.41
235 236 7.825331 TGTTCACATAACCCTTTTTCATACA 57.175 32.000 0.00 0.00 0.00 2.29
236 237 8.357402 ACTTGTTCACATAACCCTTTTTCATAC 58.643 33.333 0.00 0.00 0.00 2.39
237 238 8.356657 CACTTGTTCACATAACCCTTTTTCATA 58.643 33.333 0.00 0.00 0.00 2.15
238 239 7.147742 ACACTTGTTCACATAACCCTTTTTCAT 60.148 33.333 0.00 0.00 0.00 2.57
239 240 6.153680 ACACTTGTTCACATAACCCTTTTTCA 59.846 34.615 0.00 0.00 0.00 2.69
240 241 6.569780 ACACTTGTTCACATAACCCTTTTTC 58.430 36.000 0.00 0.00 0.00 2.29
241 242 6.538945 ACACTTGTTCACATAACCCTTTTT 57.461 33.333 0.00 0.00 0.00 1.94
242 243 6.538945 AACACTTGTTCACATAACCCTTTT 57.461 33.333 0.00 0.00 31.64 2.27
243 244 6.538945 AAACACTTGTTCACATAACCCTTT 57.461 33.333 0.00 0.00 37.25 3.11
244 245 6.538945 AAAACACTTGTTCACATAACCCTT 57.461 33.333 0.00 0.00 37.25 3.95
245 246 7.504238 TGATAAAACACTTGTTCACATAACCCT 59.496 33.333 0.00 0.00 37.25 4.34
246 247 7.653647 TGATAAAACACTTGTTCACATAACCC 58.346 34.615 0.00 0.00 37.25 4.11
247 248 8.964150 GTTGATAAAACACTTGTTCACATAACC 58.036 33.333 0.00 0.00 37.25 2.85
248 249 9.730420 AGTTGATAAAACACTTGTTCACATAAC 57.270 29.630 0.00 0.52 37.25 1.89
260 261 9.449719 CAGGGACTTATAAGTTGATAAAACACT 57.550 33.333 18.96 7.49 39.88 3.55
261 262 9.227777 ACAGGGACTTATAAGTTGATAAAACAC 57.772 33.333 18.96 5.34 39.88 3.32
268 269 9.802039 TTTGTTTACAGGGACTTATAAGTTGAT 57.198 29.630 18.96 5.70 39.88 2.57
269 270 9.059260 GTTTGTTTACAGGGACTTATAAGTTGA 57.941 33.333 18.96 0.00 39.88 3.18
270 271 8.842280 TGTTTGTTTACAGGGACTTATAAGTTG 58.158 33.333 18.96 15.22 39.88 3.16
271 272 8.983702 TGTTTGTTTACAGGGACTTATAAGTT 57.016 30.769 18.96 5.85 39.88 2.66
272 273 9.010029 CATGTTTGTTTACAGGGACTTATAAGT 57.990 33.333 18.05 18.05 43.16 2.24
273 274 7.968405 GCATGTTTGTTTACAGGGACTTATAAG 59.032 37.037 11.05 11.05 34.60 1.73
274 275 7.448777 TGCATGTTTGTTTACAGGGACTTATAA 59.551 33.333 0.00 0.00 34.60 0.98
275 276 6.943146 TGCATGTTTGTTTACAGGGACTTATA 59.057 34.615 0.00 0.00 34.60 0.98
276 277 5.772672 TGCATGTTTGTTTACAGGGACTTAT 59.227 36.000 0.00 0.00 34.60 1.73
277 278 5.133941 TGCATGTTTGTTTACAGGGACTTA 58.866 37.500 0.00 0.00 34.60 2.24
278 279 3.957497 TGCATGTTTGTTTACAGGGACTT 59.043 39.130 0.00 0.00 34.60 3.01
279 280 3.561143 TGCATGTTTGTTTACAGGGACT 58.439 40.909 0.00 0.00 43.88 3.85
280 281 3.305335 CCTGCATGTTTGTTTACAGGGAC 60.305 47.826 0.00 0.00 40.80 4.46
281 282 2.890311 CCTGCATGTTTGTTTACAGGGA 59.110 45.455 0.00 0.00 40.80 4.20
282 283 3.302365 CCTGCATGTTTGTTTACAGGG 57.698 47.619 0.00 0.00 40.80 4.45
283 284 2.890311 TCCCTGCATGTTTGTTTACAGG 59.110 45.455 0.00 0.00 43.47 4.00
284 285 3.569701 AGTCCCTGCATGTTTGTTTACAG 59.430 43.478 0.00 0.00 0.00 2.74
285 286 3.561143 AGTCCCTGCATGTTTGTTTACA 58.439 40.909 0.00 0.00 0.00 2.41
286 287 3.364964 CGAGTCCCTGCATGTTTGTTTAC 60.365 47.826 0.00 0.00 0.00 2.01
287 288 2.811431 CGAGTCCCTGCATGTTTGTTTA 59.189 45.455 0.00 0.00 0.00 2.01
288 289 1.608590 CGAGTCCCTGCATGTTTGTTT 59.391 47.619 0.00 0.00 0.00 2.83
289 290 1.238439 CGAGTCCCTGCATGTTTGTT 58.762 50.000 0.00 0.00 0.00 2.83
290 291 0.606401 CCGAGTCCCTGCATGTTTGT 60.606 55.000 0.00 0.00 0.00 2.83
291 292 1.308069 CCCGAGTCCCTGCATGTTTG 61.308 60.000 0.00 0.00 0.00 2.93
292 293 1.002134 CCCGAGTCCCTGCATGTTT 60.002 57.895 0.00 0.00 0.00 2.83
293 294 1.918293 TCCCGAGTCCCTGCATGTT 60.918 57.895 0.00 0.00 0.00 2.71
294 295 2.284625 TCCCGAGTCCCTGCATGT 60.285 61.111 0.00 0.00 0.00 3.21
295 296 1.903877 AAGTCCCGAGTCCCTGCATG 61.904 60.000 0.00 0.00 0.00 4.06
296 297 0.325296 TAAGTCCCGAGTCCCTGCAT 60.325 55.000 0.00 0.00 0.00 3.96
297 298 0.325296 ATAAGTCCCGAGTCCCTGCA 60.325 55.000 0.00 0.00 0.00 4.41
298 299 1.700955 TATAAGTCCCGAGTCCCTGC 58.299 55.000 0.00 0.00 0.00 4.85
299 300 3.297736 ACTTATAAGTCCCGAGTCCCTG 58.702 50.000 12.50 0.00 32.86 4.45
300 301 3.684408 ACTTATAAGTCCCGAGTCCCT 57.316 47.619 12.50 0.00 32.86 4.20
315 316 8.932791 CCTACTTGTTTGTTTACATCGACTTAT 58.067 33.333 0.00 0.00 0.00 1.73
316 317 7.385752 CCCTACTTGTTTGTTTACATCGACTTA 59.614 37.037 0.00 0.00 0.00 2.24
317 318 6.204108 CCCTACTTGTTTGTTTACATCGACTT 59.796 38.462 0.00 0.00 0.00 3.01
318 319 5.699458 CCCTACTTGTTTGTTTACATCGACT 59.301 40.000 0.00 0.00 0.00 4.18
319 320 5.697633 TCCCTACTTGTTTGTTTACATCGAC 59.302 40.000 0.00 0.00 0.00 4.20
320 321 5.697633 GTCCCTACTTGTTTGTTTACATCGA 59.302 40.000 0.00 0.00 0.00 3.59
321 322 5.699458 AGTCCCTACTTGTTTGTTTACATCG 59.301 40.000 0.00 0.00 29.00 3.84
322 323 7.506328 AAGTCCCTACTTGTTTGTTTACATC 57.494 36.000 0.00 0.00 44.40 3.06
323 324 9.010029 CATAAGTCCCTACTTGTTTGTTTACAT 57.990 33.333 1.11 0.00 45.63 2.29
324 325 8.212312 TCATAAGTCCCTACTTGTTTGTTTACA 58.788 33.333 1.11 0.00 45.63 2.41
325 326 8.501580 GTCATAAGTCCCTACTTGTTTGTTTAC 58.498 37.037 1.11 0.00 45.63 2.01
326 327 8.434392 AGTCATAAGTCCCTACTTGTTTGTTTA 58.566 33.333 1.11 0.00 45.63 2.01
327 328 7.287810 AGTCATAAGTCCCTACTTGTTTGTTT 58.712 34.615 1.11 0.00 45.63 2.83
328 329 6.838382 AGTCATAAGTCCCTACTTGTTTGTT 58.162 36.000 1.11 0.00 45.63 2.83
329 330 6.435292 AGTCATAAGTCCCTACTTGTTTGT 57.565 37.500 1.11 0.00 45.63 2.83
374 375 7.336176 CCCTGTTTGTTTAATAAGTCCTAGGAC 59.664 40.741 31.29 31.29 44.86 3.85
375 376 7.399634 CCCTGTTTGTTTAATAAGTCCTAGGA 58.600 38.462 7.62 7.62 0.00 2.94
376 377 6.095021 GCCCTGTTTGTTTAATAAGTCCTAGG 59.905 42.308 0.82 0.82 0.00 3.02
377 378 6.095021 GGCCCTGTTTGTTTAATAAGTCCTAG 59.905 42.308 0.00 0.00 0.00 3.02
378 379 5.947566 GGCCCTGTTTGTTTAATAAGTCCTA 59.052 40.000 0.00 0.00 0.00 2.94
379 380 4.770531 GGCCCTGTTTGTTTAATAAGTCCT 59.229 41.667 0.00 0.00 0.00 3.85
380 381 4.770531 AGGCCCTGTTTGTTTAATAAGTCC 59.229 41.667 0.00 0.00 0.00 3.85
381 382 5.977489 AGGCCCTGTTTGTTTAATAAGTC 57.023 39.130 0.00 0.00 0.00 3.01
382 383 9.536510 TTATAAGGCCCTGTTTGTTTAATAAGT 57.463 29.630 0.00 0.00 0.00 2.24
384 385 9.536510 ACTTATAAGGCCCTGTTTGTTTAATAA 57.463 29.630 16.73 0.00 0.00 1.40
385 386 9.181061 GACTTATAAGGCCCTGTTTGTTTAATA 57.819 33.333 16.73 0.00 0.00 0.98
386 387 7.148137 CGACTTATAAGGCCCTGTTTGTTTAAT 60.148 37.037 16.73 0.00 0.00 1.40
387 388 6.149807 CGACTTATAAGGCCCTGTTTGTTTAA 59.850 38.462 16.73 0.00 0.00 1.52
388 389 5.644636 CGACTTATAAGGCCCTGTTTGTTTA 59.355 40.000 16.73 0.00 0.00 2.01
389 390 4.457949 CGACTTATAAGGCCCTGTTTGTTT 59.542 41.667 16.73 0.00 0.00 2.83
390 391 4.007659 CGACTTATAAGGCCCTGTTTGTT 58.992 43.478 16.73 0.00 0.00 2.83
391 392 3.262405 TCGACTTATAAGGCCCTGTTTGT 59.738 43.478 16.73 0.00 0.00 2.83
392 393 3.869065 TCGACTTATAAGGCCCTGTTTG 58.131 45.455 16.73 0.00 0.00 2.93
393 394 4.080526 ACATCGACTTATAAGGCCCTGTTT 60.081 41.667 16.73 0.00 0.00 2.83
394 395 3.454812 ACATCGACTTATAAGGCCCTGTT 59.545 43.478 16.73 0.00 0.00 3.16
395 396 3.039011 ACATCGACTTATAAGGCCCTGT 58.961 45.455 16.73 14.38 0.00 4.00
396 397 3.753294 ACATCGACTTATAAGGCCCTG 57.247 47.619 16.73 13.79 0.00 4.45
397 398 5.129815 TGTTTACATCGACTTATAAGGCCCT 59.870 40.000 16.73 0.00 0.00 5.19
398 399 5.362263 TGTTTACATCGACTTATAAGGCCC 58.638 41.667 16.73 4.87 0.00 5.80
399 400 6.913873 TTGTTTACATCGACTTATAAGGCC 57.086 37.500 16.73 0.00 0.00 5.19
400 401 7.745015 TGTTTGTTTACATCGACTTATAAGGC 58.255 34.615 16.73 12.88 0.00 4.35
401 402 8.388103 CCTGTTTGTTTACATCGACTTATAAGG 58.612 37.037 16.73 0.17 0.00 2.69
402 403 8.932791 ACCTGTTTGTTTACATCGACTTATAAG 58.067 33.333 11.05 11.05 0.00 1.73
403 404 8.836268 ACCTGTTTGTTTACATCGACTTATAA 57.164 30.769 0.00 0.00 0.00 0.98
404 405 9.577110 CTACCTGTTTGTTTACATCGACTTATA 57.423 33.333 0.00 0.00 0.00 0.98
405 406 7.548075 CCTACCTGTTTGTTTACATCGACTTAT 59.452 37.037 0.00 0.00 0.00 1.73
406 407 6.869913 CCTACCTGTTTGTTTACATCGACTTA 59.130 38.462 0.00 0.00 0.00 2.24
407 408 5.699458 CCTACCTGTTTGTTTACATCGACTT 59.301 40.000 0.00 0.00 0.00 3.01
408 409 5.235516 CCTACCTGTTTGTTTACATCGACT 58.764 41.667 0.00 0.00 0.00 4.18
409 410 4.390909 CCCTACCTGTTTGTTTACATCGAC 59.609 45.833 0.00 0.00 0.00 4.20
410 411 4.283978 TCCCTACCTGTTTGTTTACATCGA 59.716 41.667 0.00 0.00 0.00 3.59
411 412 4.390909 GTCCCTACCTGTTTGTTTACATCG 59.609 45.833 0.00 0.00 0.00 3.84
412 413 5.557866 AGTCCCTACCTGTTTGTTTACATC 58.442 41.667 0.00 0.00 0.00 3.06
413 414 5.578157 AGTCCCTACCTGTTTGTTTACAT 57.422 39.130 0.00 0.00 0.00 2.29
414 415 5.376756 AAGTCCCTACCTGTTTGTTTACA 57.623 39.130 0.00 0.00 0.00 2.41
415 416 7.118825 GTCATAAGTCCCTACCTGTTTGTTTAC 59.881 40.741 0.00 0.00 0.00 2.01
416 417 7.016858 AGTCATAAGTCCCTACCTGTTTGTTTA 59.983 37.037 0.00 0.00 0.00 2.01
417 418 6.002082 GTCATAAGTCCCTACCTGTTTGTTT 58.998 40.000 0.00 0.00 0.00 2.83
418 419 5.309806 AGTCATAAGTCCCTACCTGTTTGTT 59.690 40.000 0.00 0.00 0.00 2.83
419 420 4.844655 AGTCATAAGTCCCTACCTGTTTGT 59.155 41.667 0.00 0.00 0.00 2.83
420 421 5.422214 AGTCATAAGTCCCTACCTGTTTG 57.578 43.478 0.00 0.00 0.00 2.93
421 422 7.750947 ATAAGTCATAAGTCCCTACCTGTTT 57.249 36.000 0.00 0.00 0.00 2.83
422 423 8.849543 TTATAAGTCATAAGTCCCTACCTGTT 57.150 34.615 0.00 0.00 0.00 3.16
423 424 8.480133 CTTATAAGTCATAAGTCCCTACCTGT 57.520 38.462 4.18 0.00 40.84 4.00
464 465 7.336176 CCCTGTTTGTTTAATAAGTCCTAGGAC 59.664 40.741 31.29 31.29 44.86 3.85
465 466 7.399634 CCCTGTTTGTTTAATAAGTCCTAGGA 58.600 38.462 7.62 7.62 0.00 2.94
466 467 6.095021 GCCCTGTTTGTTTAATAAGTCCTAGG 59.905 42.308 0.82 0.82 0.00 3.02
467 468 6.095021 GGCCCTGTTTGTTTAATAAGTCCTAG 59.905 42.308 0.00 0.00 0.00 3.02
468 469 5.947566 GGCCCTGTTTGTTTAATAAGTCCTA 59.052 40.000 0.00 0.00 0.00 2.94
469 470 4.770531 GGCCCTGTTTGTTTAATAAGTCCT 59.229 41.667 0.00 0.00 0.00 3.85
470 471 4.770531 AGGCCCTGTTTGTTTAATAAGTCC 59.229 41.667 0.00 0.00 0.00 3.85
471 472 5.475564 TCAGGCCCTGTTTGTTTAATAAGTC 59.524 40.000 11.27 0.00 32.61 3.01
472 473 5.390387 TCAGGCCCTGTTTGTTTAATAAGT 58.610 37.500 11.27 0.00 32.61 2.24
473 474 5.476945 ACTCAGGCCCTGTTTGTTTAATAAG 59.523 40.000 11.27 0.00 32.61 1.73
474 475 5.390387 ACTCAGGCCCTGTTTGTTTAATAA 58.610 37.500 11.27 0.00 32.61 1.40
475 476 4.993028 ACTCAGGCCCTGTTTGTTTAATA 58.007 39.130 11.27 0.00 32.61 0.98
476 477 3.826729 GACTCAGGCCCTGTTTGTTTAAT 59.173 43.478 11.27 0.00 32.61 1.40
477 478 3.219281 GACTCAGGCCCTGTTTGTTTAA 58.781 45.455 11.27 0.00 32.61 1.52
478 479 2.173782 TGACTCAGGCCCTGTTTGTTTA 59.826 45.455 11.27 0.52 32.61 2.01
479 480 1.064017 TGACTCAGGCCCTGTTTGTTT 60.064 47.619 11.27 0.00 32.61 2.83
480 481 0.550914 TGACTCAGGCCCTGTTTGTT 59.449 50.000 11.27 0.00 32.61 2.83
481 482 0.179018 GTGACTCAGGCCCTGTTTGT 60.179 55.000 11.27 8.46 32.61 2.83
482 483 0.109342 AGTGACTCAGGCCCTGTTTG 59.891 55.000 11.27 5.20 32.61 2.93
483 484 0.398318 GAGTGACTCAGGCCCTGTTT 59.602 55.000 11.27 0.00 32.61 2.83
484 485 1.484444 GGAGTGACTCAGGCCCTGTT 61.484 60.000 15.33 0.00 32.61 3.16
485 486 1.915769 GGAGTGACTCAGGCCCTGT 60.916 63.158 15.33 0.00 32.61 4.00
486 487 1.197430 AAGGAGTGACTCAGGCCCTG 61.197 60.000 15.33 3.69 31.08 4.45
487 488 1.159664 AAGGAGTGACTCAGGCCCT 59.840 57.895 15.33 0.00 31.08 5.19
488 489 1.298014 CAAGGAGTGACTCAGGCCC 59.702 63.158 15.33 0.00 31.08 5.80
489 490 0.036858 GACAAGGAGTGACTCAGGCC 60.037 60.000 15.33 0.00 31.08 5.19
490 491 0.972883 AGACAAGGAGTGACTCAGGC 59.027 55.000 15.33 5.82 31.08 4.85
491 492 1.337635 GCAGACAAGGAGTGACTCAGG 60.338 57.143 15.33 5.45 29.12 3.86
522 523 1.270518 TGCAGTCTTCTTGAGCTCCAC 60.271 52.381 12.15 0.00 0.00 4.02
547 548 2.478370 CGTCCTACGCTCGGTCATAAAA 60.478 50.000 0.00 0.00 33.65 1.52
603 604 5.201713 ACAAGATTCAGTCGAGAAACTCA 57.798 39.130 0.00 0.00 30.54 3.41
665 675 1.963855 CCGCCGTGTTGTCCAATGA 60.964 57.895 0.00 0.00 0.00 2.57
666 676 2.560861 CCGCCGTGTTGTCCAATG 59.439 61.111 0.00 0.00 0.00 2.82
667 677 3.361977 GCCGCCGTGTTGTCCAAT 61.362 61.111 0.00 0.00 0.00 3.16
689 699 3.842923 ATCGCCTGACAGCTCCGG 61.843 66.667 0.00 0.00 0.00 5.14
724 734 1.353022 ACGGCTGGGAAAATCCAAGTA 59.647 47.619 0.00 0.00 39.88 2.24
760 789 2.963101 AGGTTTTACAAAGGGAAGTGGC 59.037 45.455 0.00 0.00 0.00 5.01
784 813 3.655276 ACGTTGACTCTAATCCGTGTT 57.345 42.857 0.00 0.00 0.00 3.32
800 832 3.242870 GGTTGGTACTCGATCGATACGTT 60.243 47.826 19.78 3.58 0.00 3.99
868 900 2.357075 CAGCTGGTACGTCTCTCTACA 58.643 52.381 5.57 0.00 0.00 2.74
1455 1496 3.071206 AGCCGCACATCGACCTCT 61.071 61.111 0.00 0.00 41.67 3.69
1654 1695 6.158598 ACTGATTGAATAAACCATGCACAAC 58.841 36.000 0.00 0.00 0.00 3.32
1769 1827 6.458232 AGCTTAAGTCATCGAGTACTCAAT 57.542 37.500 22.37 7.13 0.00 2.57
1771 1829 5.414765 TCAAGCTTAAGTCATCGAGTACTCA 59.585 40.000 22.37 10.16 0.00 3.41
1772 1830 5.740099 GTCAAGCTTAAGTCATCGAGTACTC 59.260 44.000 13.18 13.18 0.00 2.59
1790 1848 9.846248 AGTCAATTTATTAAACATGAGTCAAGC 57.154 29.630 0.00 0.00 0.00 4.01
1796 1854 8.853345 GCACACAGTCAATTTATTAAACATGAG 58.147 33.333 0.00 1.61 0.00 2.90
1830 4569 1.552337 ACGGAGTCAGTCATCTGCATT 59.448 47.619 0.00 0.00 29.74 3.56
1917 4656 2.646930 TCAGCCAAACATCAGCTATGG 58.353 47.619 0.00 0.00 40.16 2.74
1918 4657 6.381481 TTTATCAGCCAAACATCAGCTATG 57.619 37.500 0.00 0.00 41.74 2.23
1919 4658 7.408756 TTTTTATCAGCCAAACATCAGCTAT 57.591 32.000 0.00 0.00 34.38 2.97
1920 4659 6.832520 TTTTTATCAGCCAAACATCAGCTA 57.167 33.333 0.00 0.00 34.38 3.32
1921 4660 5.726980 TTTTTATCAGCCAAACATCAGCT 57.273 34.783 0.00 0.00 37.32 4.24
1948 4687 8.992835 TGCAATAACTATAGCACATCTAGATG 57.007 34.615 27.63 27.63 44.15 2.90
1958 4697 9.389755 TCACTTAAATGTGCAATAACTATAGCA 57.610 29.630 0.00 0.00 37.81 3.49
1959 4698 9.651718 GTCACTTAAATGTGCAATAACTATAGC 57.348 33.333 0.00 0.00 37.81 2.97
1962 4701 9.448438 TGAGTCACTTAAATGTGCAATAACTAT 57.552 29.630 0.00 0.00 37.81 2.12
1963 4702 8.840833 TGAGTCACTTAAATGTGCAATAACTA 57.159 30.769 0.00 0.00 37.81 2.24
1964 4703 7.744087 TGAGTCACTTAAATGTGCAATAACT 57.256 32.000 0.00 0.00 37.81 2.24
1965 4704 8.853345 CATTGAGTCACTTAAATGTGCAATAAC 58.147 33.333 0.00 0.00 37.81 1.89
1966 4705 8.791675 TCATTGAGTCACTTAAATGTGCAATAA 58.208 29.630 11.83 0.00 37.81 1.40
1967 4706 8.334263 TCATTGAGTCACTTAAATGTGCAATA 57.666 30.769 11.83 0.00 37.81 1.90
1968 4707 7.218228 TCATTGAGTCACTTAAATGTGCAAT 57.782 32.000 11.83 0.00 37.81 3.56
1969 4708 6.631971 TCATTGAGTCACTTAAATGTGCAA 57.368 33.333 11.83 0.00 37.81 4.08
1970 4709 6.631971 TTCATTGAGTCACTTAAATGTGCA 57.368 33.333 11.83 0.00 37.81 4.57
1971 4710 7.141363 AGTTTCATTGAGTCACTTAAATGTGC 58.859 34.615 11.83 6.01 37.81 4.57
1972 4711 9.817365 CTAGTTTCATTGAGTCACTTAAATGTG 57.183 33.333 11.83 0.00 39.15 3.21
1973 4712 9.778741 TCTAGTTTCATTGAGTCACTTAAATGT 57.221 29.630 11.83 0.00 32.92 2.71
2002 4741 6.250089 CGCAAGCATTTTCTTTTGTCTTTTT 58.750 32.000 0.00 0.00 0.00 1.94
2003 4742 5.798910 CGCAAGCATTTTCTTTTGTCTTTT 58.201 33.333 0.00 0.00 0.00 2.27
2004 4743 5.393902 CGCAAGCATTTTCTTTTGTCTTT 57.606 34.783 0.00 0.00 0.00 2.52
2021 4760 3.859745 TTATGCTAAGATTCGCGCAAG 57.140 42.857 8.75 0.00 35.83 4.01
2022 4761 4.608073 TTTTATGCTAAGATTCGCGCAA 57.392 36.364 8.75 0.78 35.83 4.85
2023 4762 4.272261 TGATTTTATGCTAAGATTCGCGCA 59.728 37.500 8.75 0.00 36.75 6.09
2024 4763 4.772434 TGATTTTATGCTAAGATTCGCGC 58.228 39.130 0.00 0.00 0.00 6.86
2025 4764 7.058806 GTCATTGATTTTATGCTAAGATTCGCG 59.941 37.037 0.00 0.00 0.00 5.87
2026 4765 7.857389 TGTCATTGATTTTATGCTAAGATTCGC 59.143 33.333 0.00 0.00 0.00 4.70
2027 4766 9.888878 ATGTCATTGATTTTATGCTAAGATTCG 57.111 29.630 0.00 0.00 0.00 3.34
2033 4772 9.851686 AGTCCTATGTCATTGATTTTATGCTAA 57.148 29.630 0.00 0.00 0.00 3.09
2034 4773 9.851686 AAGTCCTATGTCATTGATTTTATGCTA 57.148 29.630 0.00 0.00 0.00 3.49
2035 4774 8.757982 AAGTCCTATGTCATTGATTTTATGCT 57.242 30.769 0.00 0.00 0.00 3.79
2040 4779 9.911788 ACATCTAAGTCCTATGTCATTGATTTT 57.088 29.630 0.00 0.00 0.00 1.82
2041 4780 9.334947 CACATCTAAGTCCTATGTCATTGATTT 57.665 33.333 0.00 0.00 31.60 2.17
2042 4781 7.443575 GCACATCTAAGTCCTATGTCATTGATT 59.556 37.037 0.00 0.00 31.60 2.57
2043 4782 6.933521 GCACATCTAAGTCCTATGTCATTGAT 59.066 38.462 0.00 0.00 31.60 2.57
2044 4783 6.127083 TGCACATCTAAGTCCTATGTCATTGA 60.127 38.462 0.00 0.00 31.60 2.57
2045 4784 6.051074 TGCACATCTAAGTCCTATGTCATTG 58.949 40.000 0.00 0.00 31.60 2.82
2046 4785 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
2047 4786 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
2048 4787 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
2049 4788 8.839310 AATATTGCACATCTAAGTCCTATGTC 57.161 34.615 0.00 0.00 31.60 3.06
2054 4793 7.659390 GCTCTAAATATTGCACATCTAAGTCCT 59.341 37.037 0.00 0.00 0.00 3.85
2055 4794 7.442364 TGCTCTAAATATTGCACATCTAAGTCC 59.558 37.037 0.00 0.00 0.00 3.85
2056 4795 8.370493 TGCTCTAAATATTGCACATCTAAGTC 57.630 34.615 0.00 0.00 0.00 3.01
2057 4796 8.915057 ATGCTCTAAATATTGCACATCTAAGT 57.085 30.769 0.70 0.00 38.29 2.24
2114 4853 8.306761 CACTTTTATCATAACTCCCTGCTTTTT 58.693 33.333 0.00 0.00 0.00 1.94
2115 4854 7.669722 TCACTTTTATCATAACTCCCTGCTTTT 59.330 33.333 0.00 0.00 0.00 2.27
2116 4855 7.121315 GTCACTTTTATCATAACTCCCTGCTTT 59.879 37.037 0.00 0.00 0.00 3.51
2117 4856 6.599638 GTCACTTTTATCATAACTCCCTGCTT 59.400 38.462 0.00 0.00 0.00 3.91
2118 4857 6.116126 GTCACTTTTATCATAACTCCCTGCT 58.884 40.000 0.00 0.00 0.00 4.24
2119 4858 5.880332 TGTCACTTTTATCATAACTCCCTGC 59.120 40.000 0.00 0.00 0.00 4.85
2120 4859 7.921786 TTGTCACTTTTATCATAACTCCCTG 57.078 36.000 0.00 0.00 0.00 4.45
2121 4860 8.383175 TCTTTGTCACTTTTATCATAACTCCCT 58.617 33.333 0.00 0.00 0.00 4.20
2122 4861 8.561738 TCTTTGTCACTTTTATCATAACTCCC 57.438 34.615 0.00 0.00 0.00 4.30
2123 4862 9.994432 CATCTTTGTCACTTTTATCATAACTCC 57.006 33.333 0.00 0.00 0.00 3.85
2126 4865 9.994432 CCTCATCTTTGTCACTTTTATCATAAC 57.006 33.333 0.00 0.00 0.00 1.89
2127 4866 9.739276 ACCTCATCTTTGTCACTTTTATCATAA 57.261 29.630 0.00 0.00 0.00 1.90
2128 4867 9.383519 GACCTCATCTTTGTCACTTTTATCATA 57.616 33.333 0.00 0.00 0.00 2.15
2129 4868 7.337942 GGACCTCATCTTTGTCACTTTTATCAT 59.662 37.037 0.00 0.00 0.00 2.45
2130 4869 6.655003 GGACCTCATCTTTGTCACTTTTATCA 59.345 38.462 0.00 0.00 0.00 2.15
2131 4870 6.183360 CGGACCTCATCTTTGTCACTTTTATC 60.183 42.308 0.00 0.00 0.00 1.75
2132 4871 5.643777 CGGACCTCATCTTTGTCACTTTTAT 59.356 40.000 0.00 0.00 0.00 1.40
2133 4872 4.994852 CGGACCTCATCTTTGTCACTTTTA 59.005 41.667 0.00 0.00 0.00 1.52
2134 4873 3.815401 CGGACCTCATCTTTGTCACTTTT 59.185 43.478 0.00 0.00 0.00 2.27
2135 4874 3.071023 TCGGACCTCATCTTTGTCACTTT 59.929 43.478 0.00 0.00 0.00 2.66
2136 4875 2.632996 TCGGACCTCATCTTTGTCACTT 59.367 45.455 0.00 0.00 0.00 3.16
2137 4876 2.248248 TCGGACCTCATCTTTGTCACT 58.752 47.619 0.00 0.00 0.00 3.41
2138 4877 2.743636 TCGGACCTCATCTTTGTCAC 57.256 50.000 0.00 0.00 0.00 3.67
2139 4878 2.897326 TCTTCGGACCTCATCTTTGTCA 59.103 45.455 0.00 0.00 0.00 3.58
2140 4879 3.594603 TCTTCGGACCTCATCTTTGTC 57.405 47.619 0.00 0.00 0.00 3.18
2141 4880 3.515502 TGATCTTCGGACCTCATCTTTGT 59.484 43.478 0.00 0.00 0.00 2.83
2142 4881 4.128925 TGATCTTCGGACCTCATCTTTG 57.871 45.455 0.00 0.00 0.00 2.77
2143 4882 4.383552 CCTTGATCTTCGGACCTCATCTTT 60.384 45.833 0.00 0.00 0.00 2.52
2144 4883 3.133721 CCTTGATCTTCGGACCTCATCTT 59.866 47.826 0.00 0.00 0.00 2.40
2145 4884 2.697751 CCTTGATCTTCGGACCTCATCT 59.302 50.000 0.00 0.00 0.00 2.90
2146 4885 2.695666 TCCTTGATCTTCGGACCTCATC 59.304 50.000 0.00 0.00 0.00 2.92
2147 4886 2.752030 TCCTTGATCTTCGGACCTCAT 58.248 47.619 0.00 0.00 0.00 2.90
2148 4887 2.231716 TCCTTGATCTTCGGACCTCA 57.768 50.000 0.00 0.00 0.00 3.86
2149 4888 3.195825 TCTTTCCTTGATCTTCGGACCTC 59.804 47.826 0.00 0.00 0.00 3.85
2150 4889 3.173965 TCTTTCCTTGATCTTCGGACCT 58.826 45.455 0.00 0.00 0.00 3.85
2151 4890 3.611766 TCTTTCCTTGATCTTCGGACC 57.388 47.619 0.00 0.00 0.00 4.46
2152 4891 4.822026 TCTTCTTTCCTTGATCTTCGGAC 58.178 43.478 0.00 0.00 0.00 4.79
2153 4892 5.012148 ACTTCTTCTTTCCTTGATCTTCGGA 59.988 40.000 0.00 0.00 0.00 4.55
2154 4893 5.241662 ACTTCTTCTTTCCTTGATCTTCGG 58.758 41.667 0.00 0.00 0.00 4.30
2155 4894 7.891183 TTACTTCTTCTTTCCTTGATCTTCG 57.109 36.000 0.00 0.00 0.00 3.79
2156 4895 8.726068 CCTTTACTTCTTCTTTCCTTGATCTTC 58.274 37.037 0.00 0.00 0.00 2.87
2157 4896 8.440771 TCCTTTACTTCTTCTTTCCTTGATCTT 58.559 33.333 0.00 0.00 0.00 2.40
2158 4897 7.978925 TCCTTTACTTCTTCTTTCCTTGATCT 58.021 34.615 0.00 0.00 0.00 2.75
2159 4898 8.622948 TTCCTTTACTTCTTCTTTCCTTGATC 57.377 34.615 0.00 0.00 0.00 2.92
2160 4899 8.996651 TTTCCTTTACTTCTTCTTTCCTTGAT 57.003 30.769 0.00 0.00 0.00 2.57
2161 4900 8.683615 GTTTTCCTTTACTTCTTCTTTCCTTGA 58.316 33.333 0.00 0.00 0.00 3.02
2162 4901 8.466798 TGTTTTCCTTTACTTCTTCTTTCCTTG 58.533 33.333 0.00 0.00 0.00 3.61
2163 4902 8.589701 TGTTTTCCTTTACTTCTTCTTTCCTT 57.410 30.769 0.00 0.00 0.00 3.36
2164 4903 8.589701 TTGTTTTCCTTTACTTCTTCTTTCCT 57.410 30.769 0.00 0.00 0.00 3.36
2165 4904 8.467598 ACTTGTTTTCCTTTACTTCTTCTTTCC 58.532 33.333 0.00 0.00 0.00 3.13
2166 4905 9.856488 AACTTGTTTTCCTTTACTTCTTCTTTC 57.144 29.630 0.00 0.00 0.00 2.62
2194 4933 8.035394 TGTTGTCACTTTTACCATTGCTAAAAA 58.965 29.630 0.09 0.00 0.00 1.94
2195 4934 7.548097 TGTTGTCACTTTTACCATTGCTAAAA 58.452 30.769 0.00 0.00 0.00 1.52
2196 4935 7.101652 TGTTGTCACTTTTACCATTGCTAAA 57.898 32.000 0.00 0.00 0.00 1.85
2197 4936 6.701145 TGTTGTCACTTTTACCATTGCTAA 57.299 33.333 0.00 0.00 0.00 3.09
2198 4937 6.701145 TTGTTGTCACTTTTACCATTGCTA 57.299 33.333 0.00 0.00 0.00 3.49
2199 4938 5.590530 TTGTTGTCACTTTTACCATTGCT 57.409 34.783 0.00 0.00 0.00 3.91
2200 4939 5.177327 CCATTGTTGTCACTTTTACCATTGC 59.823 40.000 0.00 0.00 0.00 3.56
2201 4940 5.695816 CCCATTGTTGTCACTTTTACCATTG 59.304 40.000 0.00 0.00 0.00 2.82
2202 4941 5.600484 TCCCATTGTTGTCACTTTTACCATT 59.400 36.000 0.00 0.00 0.00 3.16
2203 4942 5.010617 GTCCCATTGTTGTCACTTTTACCAT 59.989 40.000 0.00 0.00 0.00 3.55
2204 4943 4.339814 GTCCCATTGTTGTCACTTTTACCA 59.660 41.667 0.00 0.00 0.00 3.25
2205 4944 4.261867 GGTCCCATTGTTGTCACTTTTACC 60.262 45.833 0.00 0.00 0.00 2.85
2206 4945 4.555906 CGGTCCCATTGTTGTCACTTTTAC 60.556 45.833 0.00 0.00 0.00 2.01
2207 4946 3.566322 CGGTCCCATTGTTGTCACTTTTA 59.434 43.478 0.00 0.00 0.00 1.52
2208 4947 2.360801 CGGTCCCATTGTTGTCACTTTT 59.639 45.455 0.00 0.00 0.00 2.27
2209 4948 1.953686 CGGTCCCATTGTTGTCACTTT 59.046 47.619 0.00 0.00 0.00 2.66
2210 4949 1.142060 TCGGTCCCATTGTTGTCACTT 59.858 47.619 0.00 0.00 0.00 3.16
2211 4950 0.762418 TCGGTCCCATTGTTGTCACT 59.238 50.000 0.00 0.00 0.00 3.41
2212 4951 1.535462 CTTCGGTCCCATTGTTGTCAC 59.465 52.381 0.00 0.00 0.00 3.67
2213 4952 1.890876 CTTCGGTCCCATTGTTGTCA 58.109 50.000 0.00 0.00 0.00 3.58
2214 4953 0.521735 GCTTCGGTCCCATTGTTGTC 59.478 55.000 0.00 0.00 0.00 3.18
2215 4954 0.179004 TGCTTCGGTCCCATTGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
2216 4955 0.523072 CTGCTTCGGTCCCATTGTTG 59.477 55.000 0.00 0.00 0.00 3.33
2217 4956 0.609131 CCTGCTTCGGTCCCATTGTT 60.609 55.000 0.00 0.00 0.00 2.83
2218 4957 1.002134 CCTGCTTCGGTCCCATTGT 60.002 57.895 0.00 0.00 0.00 2.71
2219 4958 1.750399 CCCTGCTTCGGTCCCATTG 60.750 63.158 0.00 0.00 0.00 2.82
2220 4959 1.915078 CTCCCTGCTTCGGTCCCATT 61.915 60.000 0.00 0.00 0.00 3.16
2221 4960 2.285368 TCCCTGCTTCGGTCCCAT 60.285 61.111 0.00 0.00 0.00 4.00
2222 4961 3.003173 CTCCCTGCTTCGGTCCCA 61.003 66.667 0.00 0.00 0.00 4.37
2223 4962 4.475135 GCTCCCTGCTTCGGTCCC 62.475 72.222 0.00 0.00 38.95 4.46
2224 4963 3.672295 CTGCTCCCTGCTTCGGTCC 62.672 68.421 0.00 0.00 43.37 4.46
2225 4964 2.125350 CTGCTCCCTGCTTCGGTC 60.125 66.667 0.00 0.00 43.37 4.79
2226 4965 2.056906 AAACTGCTCCCTGCTTCGGT 62.057 55.000 0.00 0.00 43.37 4.69
2227 4966 0.890996 AAAACTGCTCCCTGCTTCGG 60.891 55.000 0.00 0.00 43.37 4.30
2228 4967 0.954452 AAAAACTGCTCCCTGCTTCG 59.046 50.000 0.00 0.00 43.37 3.79
2457 5535 6.408869 TGAGCATGAGTCATTCTGTAATTCA 58.591 36.000 10.17 0.00 0.00 2.57
2458 5536 6.915544 TGAGCATGAGTCATTCTGTAATTC 57.084 37.500 10.17 0.00 0.00 2.17
2461 5539 5.045872 CGATGAGCATGAGTCATTCTGTAA 58.954 41.667 10.17 0.00 0.00 2.41
2475 5553 4.012374 AGTGTTGAAAATCCGATGAGCAT 58.988 39.130 0.00 0.00 0.00 3.79
2478 5556 3.062639 CCGAGTGTTGAAAATCCGATGAG 59.937 47.826 0.00 0.00 0.00 2.90
2596 5685 2.835895 GTCGGGAGGAGGAGAGGC 60.836 72.222 0.00 0.00 0.00 4.70
2599 5688 2.691779 GGAGGTCGGGAGGAGGAGA 61.692 68.421 0.00 0.00 0.00 3.71
2627 5716 1.555075 GGGACAGATAGCCACTTGTCA 59.445 52.381 10.09 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.