Multiple sequence alignment - TraesCS3D01G249700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G249700 chr3D 100.000 3429 0 0 1 3429 349852237 349855665 0.000000e+00 6333
1 TraesCS3D01G249700 chr3D 92.963 270 19 0 1 270 349784429 349784698 8.920000e-106 394
2 TraesCS3D01G249700 chr3D 92.537 268 20 0 1 268 578339434 578339701 5.370000e-103 385
3 TraesCS3D01G249700 chr3D 92.222 270 18 3 1 269 128595056 128594789 2.500000e-101 379
4 TraesCS3D01G249700 chr3B 92.730 3205 156 25 270 3429 448769706 448772878 0.000000e+00 4556
5 TraesCS3D01G249700 chr3B 89.465 636 37 11 272 880 448729110 448729742 0.000000e+00 776
6 TraesCS3D01G249700 chr3B 76.506 1477 293 40 999 2442 730318971 730317516 0.000000e+00 756
7 TraesCS3D01G249700 chr3A 92.375 2072 134 13 1366 3429 468000144 468002199 0.000000e+00 2929
8 TraesCS3D01G249700 chr3A 93.012 644 34 5 729 1370 467924401 467925035 0.000000e+00 929
9 TraesCS3D01G249700 chr3A 75.573 1441 278 33 1021 2441 687644877 687643491 0.000000e+00 643
10 TraesCS3D01G249700 chr6D 92.910 268 19 0 2 269 285817192 285816925 1.150000e-104 390
11 TraesCS3D01G249700 chr6D 91.481 270 23 0 1 270 89444224 89444493 4.180000e-99 372
12 TraesCS3D01G249700 chr5D 92.222 270 21 0 1 270 71954995 71955264 1.930000e-102 383
13 TraesCS3D01G249700 chr5D 91.481 270 23 0 1 270 409980488 409980219 4.180000e-99 372
14 TraesCS3D01G249700 chr4D 92.222 270 20 1 1 270 110094793 110095061 6.940000e-102 381
15 TraesCS3D01G249700 chr4D 75.325 308 62 13 2829 3130 476866976 476867275 5.970000e-28 135
16 TraesCS3D01G249700 chr1D 91.481 270 23 0 1 270 429693751 429693482 4.180000e-99 372
17 TraesCS3D01G249700 chr4A 76.144 306 59 12 2831 3130 683607576 683607873 7.670000e-32 148
18 TraesCS3D01G249700 chr4B 76.221 307 56 16 2831 3130 600918681 600918977 2.760000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G249700 chr3D 349852237 349855665 3428 False 6333 6333 100.000 1 3429 1 chr3D.!!$F2 3428
1 TraesCS3D01G249700 chr3B 448769706 448772878 3172 False 4556 4556 92.730 270 3429 1 chr3B.!!$F2 3159
2 TraesCS3D01G249700 chr3B 448729110 448729742 632 False 776 776 89.465 272 880 1 chr3B.!!$F1 608
3 TraesCS3D01G249700 chr3B 730317516 730318971 1455 True 756 756 76.506 999 2442 1 chr3B.!!$R1 1443
4 TraesCS3D01G249700 chr3A 468000144 468002199 2055 False 2929 2929 92.375 1366 3429 1 chr3A.!!$F2 2063
5 TraesCS3D01G249700 chr3A 467924401 467925035 634 False 929 929 93.012 729 1370 1 chr3A.!!$F1 641
6 TraesCS3D01G249700 chr3A 687643491 687644877 1386 True 643 643 75.573 1021 2441 1 chr3A.!!$R1 1420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 355 0.037232 GTCCACCACGGGAAGAAGAG 60.037 60.0 0.00 0.0 39.05 2.85 F
503 508 0.182775 AATGGCCAGATAACCCCGTC 59.817 55.0 13.05 0.0 0.00 4.79 F
970 999 0.519077 GCGCCCTCTCTGTTTTCAAG 59.481 55.0 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 1987 0.034477 GCCCCTTCTTCGATTTCCCA 60.034 55.000 0.00 0.00 0.00 4.37 R
2195 2255 1.134159 CCCATCTCTTGCCTCAAGGAG 60.134 57.143 0.00 4.02 41.33 3.69 R
2649 2709 0.179034 GTGATCCCAGCTGATCCACC 60.179 60.000 17.39 0.00 40.37 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.824904 ACATTTATGTGGATGCAGACTTC 57.175 39.130 0.00 0.00 40.03 3.01
33 34 4.333649 ACATTTATGTGGATGCAGACTTCG 59.666 41.667 0.00 0.00 40.03 3.79
34 35 3.885724 TTATGTGGATGCAGACTTCGA 57.114 42.857 0.00 0.00 0.00 3.71
35 36 2.306341 ATGTGGATGCAGACTTCGAG 57.694 50.000 0.00 0.00 0.00 4.04
36 37 0.247460 TGTGGATGCAGACTTCGAGG 59.753 55.000 0.00 0.00 0.00 4.63
37 38 0.532573 GTGGATGCAGACTTCGAGGA 59.467 55.000 0.00 0.00 0.00 3.71
38 39 0.532573 TGGATGCAGACTTCGAGGAC 59.467 55.000 0.00 0.00 0.00 3.85
39 40 0.526524 GGATGCAGACTTCGAGGACG 60.527 60.000 0.00 0.00 41.26 4.79
40 41 1.142778 GATGCAGACTTCGAGGACGC 61.143 60.000 0.00 4.37 39.58 5.19
41 42 2.507324 GCAGACTTCGAGGACGCC 60.507 66.667 0.00 0.00 39.58 5.68
42 43 2.995872 GCAGACTTCGAGGACGCCT 61.996 63.158 0.00 0.00 39.58 5.52
43 44 1.654954 GCAGACTTCGAGGACGCCTA 61.655 60.000 0.00 0.00 39.58 3.93
44 45 0.378962 CAGACTTCGAGGACGCCTAG 59.621 60.000 0.00 0.00 39.58 3.02
45 46 0.748729 AGACTTCGAGGACGCCTAGG 60.749 60.000 3.67 3.67 39.58 3.02
46 47 1.726533 GACTTCGAGGACGCCTAGGG 61.727 65.000 11.72 3.13 39.58 3.53
47 48 3.140225 CTTCGAGGACGCCTAGGGC 62.140 68.421 11.72 1.76 46.75 5.19
56 57 2.838225 GCCTAGGGCCGTCTGCTA 60.838 66.667 11.72 0.00 44.06 3.49
57 58 2.862223 GCCTAGGGCCGTCTGCTAG 61.862 68.421 11.72 3.41 44.06 3.42
58 59 2.203771 CCTAGGGCCGTCTGCTAGG 61.204 68.421 15.21 15.21 40.92 3.02
59 60 1.152735 CTAGGGCCGTCTGCTAGGA 60.153 63.158 0.00 0.00 40.92 2.94
60 61 1.152735 TAGGGCCGTCTGCTAGGAG 60.153 63.158 0.00 4.60 40.92 3.69
61 62 1.934459 TAGGGCCGTCTGCTAGGAGT 61.934 60.000 11.39 0.00 40.92 3.85
62 63 2.787567 GGGCCGTCTGCTAGGAGTC 61.788 68.421 11.39 4.74 40.92 3.36
63 64 2.409651 GCCGTCTGCTAGGAGTCG 59.590 66.667 20.60 20.60 36.87 4.18
64 65 3.111939 CCGTCTGCTAGGAGTCGG 58.888 66.667 28.78 28.78 38.11 4.79
65 66 2.409651 CGTCTGCTAGGAGTCGGC 59.590 66.667 19.99 5.66 0.00 5.54
66 67 2.809010 GTCTGCTAGGAGTCGGCC 59.191 66.667 11.39 0.00 0.00 6.13
67 68 1.755008 GTCTGCTAGGAGTCGGCCT 60.755 63.158 11.39 0.00 42.15 5.19
68 69 1.454111 TCTGCTAGGAGTCGGCCTC 60.454 63.158 11.39 0.00 39.50 4.70
69 70 1.454847 CTGCTAGGAGTCGGCCTCT 60.455 63.158 2.51 0.00 40.30 3.69
70 71 1.452145 CTGCTAGGAGTCGGCCTCTC 61.452 65.000 14.05 14.05 40.30 3.20
71 72 1.152839 GCTAGGAGTCGGCCTCTCT 60.153 63.158 19.35 7.63 40.30 3.10
72 73 1.452145 GCTAGGAGTCGGCCTCTCTG 61.452 65.000 19.35 12.98 40.30 3.35
73 74 0.821711 CTAGGAGTCGGCCTCTCTGG 60.822 65.000 19.35 9.66 40.30 3.86
74 75 1.279749 TAGGAGTCGGCCTCTCTGGA 61.280 60.000 19.35 0.00 40.30 3.86
75 76 2.124693 GGAGTCGGCCTCTCTGGAG 61.125 68.421 19.35 0.00 40.30 3.86
83 84 3.847602 CTCTCTGGAGGCCGCCTG 61.848 72.222 27.03 25.39 36.03 4.85
84 85 4.382541 TCTCTGGAGGCCGCCTGA 62.383 66.667 28.79 28.79 31.76 3.86
85 86 3.160047 CTCTGGAGGCCGCCTGAT 61.160 66.667 30.34 0.00 35.67 2.90
86 87 1.834378 CTCTGGAGGCCGCCTGATA 60.834 63.158 30.34 13.46 35.67 2.15
87 88 1.814772 CTCTGGAGGCCGCCTGATAG 61.815 65.000 30.34 18.23 35.67 2.08
88 89 2.844362 TGGAGGCCGCCTGATAGG 60.844 66.667 27.03 0.00 38.80 2.57
89 90 2.524394 GGAGGCCGCCTGATAGGA 60.524 66.667 19.21 0.00 37.67 2.94
90 91 2.578714 GGAGGCCGCCTGATAGGAG 61.579 68.421 19.21 0.00 37.67 3.69
91 92 1.834822 GAGGCCGCCTGATAGGAGT 60.835 63.158 19.21 0.00 37.67 3.85
92 93 1.811645 GAGGCCGCCTGATAGGAGTC 61.812 65.000 19.21 0.00 37.67 3.36
93 94 2.336809 GCCGCCTGATAGGAGTCG 59.663 66.667 0.00 0.00 37.67 4.18
94 95 3.043419 CCGCCTGATAGGAGTCGG 58.957 66.667 0.00 0.00 37.67 4.79
95 96 2.336809 CGCCTGATAGGAGTCGGC 59.663 66.667 0.00 0.00 37.67 5.54
96 97 2.737830 GCCTGATAGGAGTCGGCC 59.262 66.667 0.00 0.00 37.67 6.13
97 98 2.873525 GCCTGATAGGAGTCGGCCC 61.874 68.421 0.00 0.00 37.67 5.80
98 99 1.457643 CCTGATAGGAGTCGGCCCA 60.458 63.158 0.00 0.00 37.67 5.36
99 100 1.742768 CTGATAGGAGTCGGCCCAC 59.257 63.158 0.00 0.00 0.00 4.61
100 101 1.749334 CTGATAGGAGTCGGCCCACC 61.749 65.000 0.00 0.00 0.00 4.61
101 102 1.457831 GATAGGAGTCGGCCCACCT 60.458 63.158 0.00 0.00 36.65 4.00
102 103 1.457831 ATAGGAGTCGGCCCACCTC 60.458 63.158 0.00 0.00 34.42 3.85
105 106 4.436998 GAGTCGGCCCACCTCGTG 62.437 72.222 0.00 0.00 0.00 4.35
106 107 4.988716 AGTCGGCCCACCTCGTGA 62.989 66.667 0.00 0.00 35.23 4.35
107 108 4.736896 GTCGGCCCACCTCGTGAC 62.737 72.222 0.00 0.00 35.23 3.67
113 114 4.742201 CCACCTCGTGACCGCCTG 62.742 72.222 0.00 0.00 35.23 4.85
134 135 2.747855 GGCTTTGCCGTCTCCTGG 60.748 66.667 0.00 0.00 39.62 4.45
156 157 3.508840 CGGCCGCTTGGACCAATC 61.509 66.667 14.67 2.17 37.58 2.67
157 158 3.508840 GGCCGCTTGGACCAATCG 61.509 66.667 20.86 20.86 32.99 3.34
159 160 3.508840 CCGCTTGGACCAATCGGC 61.509 66.667 30.52 19.06 44.03 5.54
160 161 3.508840 CGCTTGGACCAATCGGCC 61.509 66.667 20.22 0.00 30.80 6.13
161 162 3.508840 GCTTGGACCAATCGGCCG 61.509 66.667 22.12 22.12 34.57 6.13
162 163 3.508840 CTTGGACCAATCGGCCGC 61.509 66.667 23.51 4.66 34.57 6.53
184 185 3.958860 AGGCGGTGCTTGGCTCTT 61.959 61.111 0.00 0.00 37.80 2.85
185 186 2.985847 GGCGGTGCTTGGCTCTTT 60.986 61.111 0.00 0.00 0.00 2.52
186 187 2.256461 GCGGTGCTTGGCTCTTTG 59.744 61.111 0.00 0.00 0.00 2.77
187 188 2.260869 GCGGTGCTTGGCTCTTTGA 61.261 57.895 0.00 0.00 0.00 2.69
188 189 1.795170 GCGGTGCTTGGCTCTTTGAA 61.795 55.000 0.00 0.00 0.00 2.69
189 190 0.883833 CGGTGCTTGGCTCTTTGAAT 59.116 50.000 0.00 0.00 0.00 2.57
190 191 1.135575 CGGTGCTTGGCTCTTTGAATC 60.136 52.381 0.00 0.00 0.00 2.52
191 192 2.165998 GGTGCTTGGCTCTTTGAATCT 58.834 47.619 0.00 0.00 0.00 2.40
192 193 2.560105 GGTGCTTGGCTCTTTGAATCTT 59.440 45.455 0.00 0.00 0.00 2.40
193 194 3.572584 GTGCTTGGCTCTTTGAATCTTG 58.427 45.455 0.00 0.00 0.00 3.02
194 195 3.254166 GTGCTTGGCTCTTTGAATCTTGA 59.746 43.478 0.00 0.00 0.00 3.02
195 196 3.504906 TGCTTGGCTCTTTGAATCTTGAG 59.495 43.478 0.00 0.00 0.00 3.02
196 197 3.119566 GCTTGGCTCTTTGAATCTTGAGG 60.120 47.826 0.00 0.00 0.00 3.86
197 198 3.077484 TGGCTCTTTGAATCTTGAGGG 57.923 47.619 0.00 0.00 0.00 4.30
198 199 2.644299 TGGCTCTTTGAATCTTGAGGGA 59.356 45.455 0.00 0.00 0.00 4.20
199 200 3.277715 GGCTCTTTGAATCTTGAGGGAG 58.722 50.000 0.00 0.00 0.00 4.30
200 201 2.682352 GCTCTTTGAATCTTGAGGGAGC 59.318 50.000 0.00 0.00 38.17 4.70
201 202 3.871463 GCTCTTTGAATCTTGAGGGAGCA 60.871 47.826 0.00 0.00 42.76 4.26
202 203 3.940221 CTCTTTGAATCTTGAGGGAGCAG 59.060 47.826 0.00 0.00 0.00 4.24
203 204 2.119801 TTGAATCTTGAGGGAGCAGC 57.880 50.000 0.00 0.00 0.00 5.25
204 205 0.254178 TGAATCTTGAGGGAGCAGCC 59.746 55.000 0.00 0.00 0.00 4.85
205 206 0.813210 GAATCTTGAGGGAGCAGCCG 60.813 60.000 0.00 0.00 37.63 5.52
206 207 2.883267 AATCTTGAGGGAGCAGCCGC 62.883 60.000 0.00 0.00 37.63 6.53
220 221 3.691342 CCGCCCCTGACGTCTTGA 61.691 66.667 17.92 0.00 0.00 3.02
221 222 2.342279 CGCCCCTGACGTCTTGAA 59.658 61.111 17.92 0.00 0.00 2.69
222 223 1.738099 CGCCCCTGACGTCTTGAAG 60.738 63.158 17.92 5.34 0.00 3.02
223 224 2.035442 GCCCCTGACGTCTTGAAGC 61.035 63.158 17.92 9.52 0.00 3.86
224 225 1.738099 CCCCTGACGTCTTGAAGCG 60.738 63.158 17.92 7.31 0.00 4.68
225 226 2.383527 CCCTGACGTCTTGAAGCGC 61.384 63.158 17.92 0.00 0.00 5.92
226 227 2.383527 CCTGACGTCTTGAAGCGCC 61.384 63.158 17.92 0.00 0.00 6.53
227 228 1.664649 CTGACGTCTTGAAGCGCCA 60.665 57.895 17.92 0.00 0.00 5.69
228 229 1.005037 TGACGTCTTGAAGCGCCAT 60.005 52.632 17.92 0.00 0.00 4.40
229 230 1.291184 TGACGTCTTGAAGCGCCATG 61.291 55.000 17.92 0.00 0.00 3.66
230 231 1.970917 GACGTCTTGAAGCGCCATGG 61.971 60.000 7.63 7.63 0.00 3.66
231 232 2.753966 CGTCTTGAAGCGCCATGGG 61.754 63.158 15.13 4.77 0.00 4.00
232 233 2.045045 TCTTGAAGCGCCATGGGG 60.045 61.111 23.98 23.98 37.18 4.96
233 234 3.142838 CTTGAAGCGCCATGGGGG 61.143 66.667 28.30 11.75 38.76 5.40
252 253 2.417516 CCGATGAGGCTACCCGTG 59.582 66.667 0.00 0.00 35.76 4.94
253 254 2.417516 CGATGAGGCTACCCGTGG 59.582 66.667 0.00 0.00 35.76 4.94
254 255 2.109181 GATGAGGCTACCCGTGGC 59.891 66.667 0.00 0.00 35.76 5.01
260 261 4.968370 GCTACCCGTGGCCAATTA 57.032 55.556 7.24 0.00 0.00 1.40
261 262 2.400911 GCTACCCGTGGCCAATTAC 58.599 57.895 7.24 0.00 0.00 1.89
262 263 0.107361 GCTACCCGTGGCCAATTACT 60.107 55.000 7.24 0.00 0.00 2.24
263 264 1.949465 CTACCCGTGGCCAATTACTC 58.051 55.000 7.24 0.00 0.00 2.59
264 265 0.542805 TACCCGTGGCCAATTACTCC 59.457 55.000 7.24 0.00 0.00 3.85
265 266 1.817941 CCCGTGGCCAATTACTCCG 60.818 63.158 7.24 4.51 0.00 4.63
266 267 1.219664 CCGTGGCCAATTACTCCGA 59.780 57.895 7.24 0.00 0.00 4.55
267 268 1.087771 CCGTGGCCAATTACTCCGAC 61.088 60.000 7.24 0.00 0.00 4.79
268 269 0.390603 CGTGGCCAATTACTCCGACA 60.391 55.000 7.24 0.00 0.00 4.35
326 327 1.169577 ACGAGTCGTCATCAGAGCTT 58.830 50.000 13.56 0.00 33.69 3.74
354 355 0.037232 GTCCACCACGGGAAGAAGAG 60.037 60.000 0.00 0.00 39.05 2.85
366 367 0.615331 AAGAAGAGGCCGAGATGCAA 59.385 50.000 0.00 0.00 0.00 4.08
393 394 1.672363 CATCACCACATCCAATCACCG 59.328 52.381 0.00 0.00 0.00 4.94
413 414 2.981302 CCAGTCTCATGGCCACGA 59.019 61.111 8.16 3.50 32.48 4.35
470 475 3.217626 CACCCATCTTCCTAATCTTGGC 58.782 50.000 0.00 0.00 0.00 4.52
476 481 3.101437 TCTTCCTAATCTTGGCCGTACA 58.899 45.455 0.00 0.00 0.00 2.90
486 491 1.743995 GGCCGTACACGCTGGAAAT 60.744 57.895 0.00 0.00 38.18 2.17
501 506 1.318576 GAAATGGCCAGATAACCCCG 58.681 55.000 13.05 0.00 0.00 5.73
502 507 0.629058 AAATGGCCAGATAACCCCGT 59.371 50.000 13.05 0.00 0.00 5.28
503 508 0.182775 AATGGCCAGATAACCCCGTC 59.817 55.000 13.05 0.00 0.00 4.79
506 511 2.070650 GCCAGATAACCCCGTCCCT 61.071 63.158 0.00 0.00 0.00 4.20
509 514 2.121129 CCAGATAACCCCGTCCCTTTA 58.879 52.381 0.00 0.00 0.00 1.85
510 515 2.506644 CCAGATAACCCCGTCCCTTTAA 59.493 50.000 0.00 0.00 0.00 1.52
600 609 2.816520 CGGCGGGGTAGGTTTTCG 60.817 66.667 0.00 0.00 0.00 3.46
659 668 2.156504 GTGAACGCTCTGACATCAAGTG 59.843 50.000 0.00 4.25 0.00 3.16
968 997 0.973632 TAGCGCCCTCTCTGTTTTCA 59.026 50.000 2.29 0.00 0.00 2.69
970 999 0.519077 GCGCCCTCTCTGTTTTCAAG 59.481 55.000 0.00 0.00 0.00 3.02
1112 1150 1.525765 TCTGCAAAAGCTGGTGCGA 60.526 52.632 15.08 12.46 43.93 5.10
1191 1229 4.350520 GGGATCTTCTTCATGGAGGAGATT 59.649 45.833 23.64 9.59 41.16 2.40
1500 1544 2.174639 TCACAAGTTGGGTTCCATGACT 59.825 45.455 4.74 0.00 31.53 3.41
1686 1730 2.885616 ACCGTCTACTGGAAAGGAGAA 58.114 47.619 0.00 0.00 0.00 2.87
1747 1800 2.817258 TCATTCACCCCTTAAGCAAACG 59.183 45.455 0.00 0.00 0.00 3.60
1752 1805 3.016736 CACCCCTTAAGCAAACGATGAT 58.983 45.455 0.00 0.00 0.00 2.45
1782 1835 4.681074 TTGGGTTTTGGTTTTCCTCATC 57.319 40.909 0.00 0.00 41.38 2.92
1799 1852 7.206981 TCCTCATCTTTTTAAGCTGAAACTG 57.793 36.000 0.00 0.00 33.68 3.16
1870 1927 3.009723 CAGCATAACCTTGTCGAATGGT 58.990 45.455 0.00 0.00 35.29 3.55
1918 1975 5.316167 ACAAGCATGGATGAGTTTACAGAA 58.684 37.500 0.00 0.00 0.00 3.02
2195 2255 6.152661 TGAATGGGACTTCAACAATGGTATTC 59.847 38.462 0.00 0.00 32.35 1.75
2224 2284 1.612463 GCAAGAGATGGGGATGAATGC 59.388 52.381 0.00 0.00 0.00 3.56
2233 2293 1.401905 GGGGATGAATGCGACTTTGTC 59.598 52.381 0.00 0.00 0.00 3.18
2293 2353 1.815003 GAGATTGCCTTCTTGTGGGTG 59.185 52.381 0.00 0.00 0.00 4.61
2389 2449 7.639062 ATGTGTAGGAGATTCCTTTCCATAT 57.361 36.000 2.48 0.53 46.91 1.78
2479 2539 7.306807 CGATGCCATATGACTTGTAACTTACAG 60.307 40.741 3.65 0.70 40.24 2.74
2530 2590 3.495001 GCAGTTAACAGTTGAGTCTGGTC 59.505 47.826 8.61 0.00 39.48 4.02
2533 2593 5.235186 CAGTTAACAGTTGAGTCTGGTCTTG 59.765 44.000 8.61 0.00 39.48 3.02
2575 2635 9.807921 TGGAGTCCTGTCTTAATTTTAAATTCT 57.192 29.630 11.33 0.00 0.00 2.40
2649 2709 1.812571 CAGGATTCTGGACAAAACCCG 59.187 52.381 0.00 0.00 37.36 5.28
2652 2712 1.539827 GATTCTGGACAAAACCCGGTG 59.460 52.381 0.00 0.00 0.00 4.94
2680 2740 1.336632 GGGATCACTCTGGCAGAGCT 61.337 60.000 37.64 25.05 46.12 4.09
2682 2742 1.473080 GGATCACTCTGGCAGAGCTTC 60.473 57.143 37.64 29.55 46.12 3.86
2742 2802 4.462508 TTCTTCCTCTGCATACTCTGTG 57.537 45.455 0.00 0.00 0.00 3.66
2898 2958 2.969821 TCACAGGTTATTGCTTGGGT 57.030 45.000 0.00 0.00 0.00 4.51
2906 2966 3.249799 GGTTATTGCTTGGGTTGTTTTGC 59.750 43.478 0.00 0.00 0.00 3.68
2975 3035 9.901172 ATTACGGAAAATACTACATTCCTTTCT 57.099 29.630 0.00 0.00 40.37 2.52
3029 3089 7.597386 ACTTCTCAGCTTTATCATGTTTTTCC 58.403 34.615 0.00 0.00 0.00 3.13
3031 3091 7.149569 TCTCAGCTTTATCATGTTTTTCCAG 57.850 36.000 0.00 0.00 0.00 3.86
3092 3152 6.261381 AGTGTTTGACCAACTCGCTTTTATTA 59.739 34.615 0.00 0.00 36.21 0.98
3103 3163 7.308782 ACTCGCTTTTATTAGATGAAGTTGG 57.691 36.000 0.00 0.00 0.00 3.77
3155 3216 2.387757 AGAGGAGCTCATGTTCTCTCC 58.612 52.381 17.19 13.59 44.09 3.71
3174 3235 5.491982 TCTCCTAAAATTGCACTCTCCTTC 58.508 41.667 0.00 0.00 0.00 3.46
3189 3250 5.836358 ACTCTCCTTCCTATTCTGATACCAC 59.164 44.000 0.00 0.00 0.00 4.16
3297 3367 3.355378 TGTTCATGTAAATCAGGCAGGG 58.645 45.455 0.00 0.00 0.00 4.45
3331 3420 3.199880 AGTGACTTGTCAAGTTCCTGG 57.800 47.619 19.09 0.00 43.03 4.45
3379 3468 5.278512 GGGAGTGGAAACTTTTGTTGAGATC 60.279 44.000 0.00 0.00 42.67 2.75
3400 3489 2.022934 TGTGATGCTGAAACACAAGCA 58.977 42.857 0.00 0.00 40.72 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.333649 CGAAGTCTGCATCCACATAAATGT 59.666 41.667 0.00 0.00 42.84 2.71
11 12 4.571984 TCGAAGTCTGCATCCACATAAATG 59.428 41.667 0.00 0.00 0.00 2.32
12 13 4.769688 TCGAAGTCTGCATCCACATAAAT 58.230 39.130 0.00 0.00 0.00 1.40
13 14 4.183865 CTCGAAGTCTGCATCCACATAAA 58.816 43.478 0.00 0.00 0.00 1.40
14 15 3.430790 CCTCGAAGTCTGCATCCACATAA 60.431 47.826 0.00 0.00 0.00 1.90
15 16 2.101415 CCTCGAAGTCTGCATCCACATA 59.899 50.000 0.00 0.00 0.00 2.29
16 17 1.134580 CCTCGAAGTCTGCATCCACAT 60.135 52.381 0.00 0.00 0.00 3.21
17 18 0.247460 CCTCGAAGTCTGCATCCACA 59.753 55.000 0.00 0.00 0.00 4.17
18 19 0.532573 TCCTCGAAGTCTGCATCCAC 59.467 55.000 0.00 0.00 0.00 4.02
19 20 0.532573 GTCCTCGAAGTCTGCATCCA 59.467 55.000 0.00 0.00 0.00 3.41
20 21 0.526524 CGTCCTCGAAGTCTGCATCC 60.527 60.000 0.00 0.00 39.71 3.51
21 22 1.142778 GCGTCCTCGAAGTCTGCATC 61.143 60.000 0.00 0.00 39.71 3.91
22 23 1.153745 GCGTCCTCGAAGTCTGCAT 60.154 57.895 0.00 0.00 39.71 3.96
23 24 2.258591 GCGTCCTCGAAGTCTGCA 59.741 61.111 0.00 0.00 39.71 4.41
24 25 1.654954 TAGGCGTCCTCGAAGTCTGC 61.655 60.000 1.46 0.00 39.71 4.26
25 26 0.378962 CTAGGCGTCCTCGAAGTCTG 59.621 60.000 1.46 0.00 39.71 3.51
26 27 0.748729 CCTAGGCGTCCTCGAAGTCT 60.749 60.000 0.00 0.00 39.71 3.24
27 28 1.726533 CCCTAGGCGTCCTCGAAGTC 61.727 65.000 2.05 0.00 39.71 3.01
28 29 1.753463 CCCTAGGCGTCCTCGAAGT 60.753 63.158 2.05 0.00 39.71 3.01
29 30 3.121019 CCCTAGGCGTCCTCGAAG 58.879 66.667 2.05 0.00 39.71 3.79
30 31 3.145551 GCCCTAGGCGTCCTCGAA 61.146 66.667 2.05 0.00 39.62 3.71
40 41 2.203771 CCTAGCAGACGGCCCTAGG 61.204 68.421 15.88 15.88 46.50 3.02
41 42 1.152735 TCCTAGCAGACGGCCCTAG 60.153 63.158 0.00 6.60 46.50 3.02
42 43 1.152735 CTCCTAGCAGACGGCCCTA 60.153 63.158 0.00 0.00 46.50 3.53
43 44 2.443016 CTCCTAGCAGACGGCCCT 60.443 66.667 0.00 0.00 46.50 5.19
44 45 2.760385 ACTCCTAGCAGACGGCCC 60.760 66.667 0.00 0.00 46.50 5.80
45 46 2.809010 GACTCCTAGCAGACGGCC 59.191 66.667 0.00 0.00 46.50 6.13
46 47 2.409651 CGACTCCTAGCAGACGGC 59.590 66.667 0.00 0.00 45.30 5.68
47 48 3.111939 CCGACTCCTAGCAGACGG 58.888 66.667 10.15 10.15 43.54 4.79
48 49 2.409651 GCCGACTCCTAGCAGACG 59.590 66.667 0.00 0.00 0.00 4.18
49 50 1.730451 GAGGCCGACTCCTAGCAGAC 61.730 65.000 0.00 0.00 40.49 3.51
50 51 1.454111 GAGGCCGACTCCTAGCAGA 60.454 63.158 0.00 0.00 40.49 4.26
51 52 3.124686 GAGGCCGACTCCTAGCAG 58.875 66.667 0.00 0.00 40.49 4.24
58 59 3.520402 CTCCAGAGAGGCCGACTC 58.480 66.667 20.22 20.22 46.98 3.36
66 67 3.847602 CAGGCGGCCTCCAGAGAG 61.848 72.222 20.97 1.62 40.09 3.20
67 68 2.298335 TATCAGGCGGCCTCCAGAGA 62.298 60.000 20.97 13.69 0.00 3.10
68 69 1.814772 CTATCAGGCGGCCTCCAGAG 61.815 65.000 20.97 11.56 0.00 3.35
69 70 1.834378 CTATCAGGCGGCCTCCAGA 60.834 63.158 20.97 12.56 0.00 3.86
70 71 2.739784 CTATCAGGCGGCCTCCAG 59.260 66.667 20.97 12.38 0.00 3.86
71 72 2.844362 CCTATCAGGCGGCCTCCA 60.844 66.667 20.97 9.32 0.00 3.86
72 73 2.524394 TCCTATCAGGCGGCCTCC 60.524 66.667 20.97 2.56 34.61 4.30
73 74 1.811645 GACTCCTATCAGGCGGCCTC 61.812 65.000 20.97 0.27 34.61 4.70
74 75 1.834822 GACTCCTATCAGGCGGCCT 60.835 63.158 17.69 17.69 34.61 5.19
75 76 2.737830 GACTCCTATCAGGCGGCC 59.262 66.667 12.11 12.11 34.61 6.13
76 77 2.336809 CGACTCCTATCAGGCGGC 59.663 66.667 0.00 0.00 41.62 6.53
78 79 2.336809 GCCGACTCCTATCAGGCG 59.663 66.667 0.00 0.00 45.25 5.52
79 80 2.737830 GGCCGACTCCTATCAGGC 59.262 66.667 0.00 0.00 46.51 4.85
80 81 1.457643 TGGGCCGACTCCTATCAGG 60.458 63.158 0.00 0.00 36.46 3.86
81 82 1.742768 GTGGGCCGACTCCTATCAG 59.257 63.158 11.17 0.00 0.00 2.90
82 83 1.760875 GGTGGGCCGACTCCTATCA 60.761 63.158 18.11 0.00 0.00 2.15
83 84 1.457831 AGGTGGGCCGACTCCTATC 60.458 63.158 18.11 0.00 40.50 2.08
84 85 1.457831 GAGGTGGGCCGACTCCTAT 60.458 63.158 18.11 0.00 40.50 2.57
85 86 2.043248 GAGGTGGGCCGACTCCTA 60.043 66.667 18.11 0.00 40.50 2.94
88 89 4.436998 CACGAGGTGGGCCGACTC 62.437 72.222 18.11 15.14 40.50 3.36
89 90 4.988716 TCACGAGGTGGGCCGACT 62.989 66.667 18.11 4.91 40.50 4.18
90 91 4.736896 GTCACGAGGTGGGCCGAC 62.737 72.222 9.83 9.83 40.50 4.79
96 97 4.742201 CAGGCGGTCACGAGGTGG 62.742 72.222 0.00 0.00 44.60 4.61
117 118 2.747855 CCAGGAGACGGCAAAGCC 60.748 66.667 0.00 0.00 46.75 4.35
118 119 3.435186 GCCAGGAGACGGCAAAGC 61.435 66.667 0.00 0.00 45.41 3.51
119 120 3.121030 CGCCAGGAGACGGCAAAG 61.121 66.667 0.00 0.00 46.07 2.77
120 121 4.697756 CCGCCAGGAGACGGCAAA 62.698 66.667 0.00 0.00 46.07 3.68
139 140 3.508840 GATTGGTCCAAGCGGCCG 61.509 66.667 24.05 24.05 32.74 6.13
144 145 3.508840 CGGCCGATTGGTCCAAGC 61.509 66.667 24.07 9.95 36.06 4.01
145 146 3.508840 GCGGCCGATTGGTCCAAG 61.509 66.667 33.48 0.00 36.06 3.61
166 167 3.909086 AAGAGCCAAGCACCGCCTC 62.909 63.158 0.00 0.00 0.00 4.70
167 168 3.497884 AAAGAGCCAAGCACCGCCT 62.498 57.895 0.00 0.00 0.00 5.52
168 169 2.985847 AAAGAGCCAAGCACCGCC 60.986 61.111 0.00 0.00 0.00 6.13
169 170 1.795170 TTCAAAGAGCCAAGCACCGC 61.795 55.000 0.00 0.00 0.00 5.68
170 171 0.883833 ATTCAAAGAGCCAAGCACCG 59.116 50.000 0.00 0.00 0.00 4.94
171 172 2.165998 AGATTCAAAGAGCCAAGCACC 58.834 47.619 0.00 0.00 0.00 5.01
172 173 3.254166 TCAAGATTCAAAGAGCCAAGCAC 59.746 43.478 0.00 0.00 0.00 4.40
173 174 3.489355 TCAAGATTCAAAGAGCCAAGCA 58.511 40.909 0.00 0.00 0.00 3.91
174 175 3.119566 CCTCAAGATTCAAAGAGCCAAGC 60.120 47.826 0.00 0.00 0.00 4.01
175 176 3.442977 CCCTCAAGATTCAAAGAGCCAAG 59.557 47.826 0.00 0.00 0.00 3.61
176 177 3.074390 TCCCTCAAGATTCAAAGAGCCAA 59.926 43.478 0.00 0.00 0.00 4.52
177 178 2.644299 TCCCTCAAGATTCAAAGAGCCA 59.356 45.455 0.00 0.00 0.00 4.75
178 179 3.277715 CTCCCTCAAGATTCAAAGAGCC 58.722 50.000 0.00 0.00 0.00 4.70
179 180 2.682352 GCTCCCTCAAGATTCAAAGAGC 59.318 50.000 0.00 0.00 38.76 4.09
180 181 3.940221 CTGCTCCCTCAAGATTCAAAGAG 59.060 47.826 0.00 0.00 0.00 2.85
181 182 3.871463 GCTGCTCCCTCAAGATTCAAAGA 60.871 47.826 0.00 0.00 0.00 2.52
182 183 2.422832 GCTGCTCCCTCAAGATTCAAAG 59.577 50.000 0.00 0.00 0.00 2.77
183 184 2.440409 GCTGCTCCCTCAAGATTCAAA 58.560 47.619 0.00 0.00 0.00 2.69
184 185 1.340405 GGCTGCTCCCTCAAGATTCAA 60.340 52.381 0.00 0.00 0.00 2.69
185 186 0.254178 GGCTGCTCCCTCAAGATTCA 59.746 55.000 0.00 0.00 0.00 2.57
186 187 0.813210 CGGCTGCTCCCTCAAGATTC 60.813 60.000 0.00 0.00 0.00 2.52
187 188 1.222936 CGGCTGCTCCCTCAAGATT 59.777 57.895 0.00 0.00 0.00 2.40
188 189 2.906458 CGGCTGCTCCCTCAAGAT 59.094 61.111 0.00 0.00 0.00 2.40
189 190 4.087892 GCGGCTGCTCCCTCAAGA 62.088 66.667 11.21 0.00 38.39 3.02
203 204 3.234630 TTCAAGACGTCAGGGGCGG 62.235 63.158 19.50 0.00 0.00 6.13
204 205 1.738099 CTTCAAGACGTCAGGGGCG 60.738 63.158 19.50 0.00 0.00 6.13
205 206 2.035442 GCTTCAAGACGTCAGGGGC 61.035 63.158 19.50 11.10 0.00 5.80
206 207 1.738099 CGCTTCAAGACGTCAGGGG 60.738 63.158 19.50 2.16 0.00 4.79
207 208 2.383527 GCGCTTCAAGACGTCAGGG 61.384 63.158 19.50 14.99 0.00 4.45
208 209 2.383527 GGCGCTTCAAGACGTCAGG 61.384 63.158 19.50 9.29 33.22 3.86
209 210 1.664649 TGGCGCTTCAAGACGTCAG 60.665 57.895 19.50 10.06 39.27 3.51
210 211 2.419620 TGGCGCTTCAAGACGTCA 59.580 55.556 19.50 4.69 42.37 4.35
211 212 1.421485 CATGGCGCTTCAAGACGTC 59.579 57.895 7.70 7.70 0.00 4.34
212 213 2.034879 CCATGGCGCTTCAAGACGT 61.035 57.895 7.64 0.00 0.00 4.34
213 214 2.753966 CCCATGGCGCTTCAAGACG 61.754 63.158 6.09 0.00 0.00 4.18
214 215 2.409870 CCCCATGGCGCTTCAAGAC 61.410 63.158 6.09 0.00 0.00 3.01
215 216 2.045045 CCCCATGGCGCTTCAAGA 60.045 61.111 6.09 0.00 0.00 3.02
216 217 3.142838 CCCCCATGGCGCTTCAAG 61.143 66.667 6.09 0.00 0.00 3.02
235 236 2.417516 CACGGGTAGCCTCATCGG 59.582 66.667 9.73 0.00 0.00 4.18
236 237 2.417516 CCACGGGTAGCCTCATCG 59.582 66.667 9.73 0.00 0.00 3.84
237 238 2.109181 GCCACGGGTAGCCTCATC 59.891 66.667 9.73 0.00 0.00 2.92
238 239 3.480133 GGCCACGGGTAGCCTCAT 61.480 66.667 9.73 0.00 46.14 2.90
243 244 0.107361 AGTAATTGGCCACGGGTAGC 60.107 55.000 3.88 0.00 0.00 3.58
244 245 1.474498 GGAGTAATTGGCCACGGGTAG 60.474 57.143 3.88 0.00 0.00 3.18
245 246 0.542805 GGAGTAATTGGCCACGGGTA 59.457 55.000 3.88 0.00 0.00 3.69
246 247 1.301954 GGAGTAATTGGCCACGGGT 59.698 57.895 3.88 0.00 0.00 5.28
247 248 1.817941 CGGAGTAATTGGCCACGGG 60.818 63.158 3.88 0.00 0.00 5.28
248 249 1.087771 GTCGGAGTAATTGGCCACGG 61.088 60.000 3.88 0.00 0.00 4.94
249 250 0.390603 TGTCGGAGTAATTGGCCACG 60.391 55.000 3.88 3.59 0.00 4.94
250 251 1.369625 CTGTCGGAGTAATTGGCCAC 58.630 55.000 3.88 0.00 0.00 5.01
251 252 0.392461 GCTGTCGGAGTAATTGGCCA 60.392 55.000 0.00 0.00 0.00 5.36
252 253 1.429148 CGCTGTCGGAGTAATTGGCC 61.429 60.000 0.00 0.00 0.00 5.36
253 254 0.459585 TCGCTGTCGGAGTAATTGGC 60.460 55.000 0.00 0.00 36.13 4.52
254 255 1.278238 GTCGCTGTCGGAGTAATTGG 58.722 55.000 0.00 0.00 36.13 3.16
255 256 1.278238 GGTCGCTGTCGGAGTAATTG 58.722 55.000 0.00 0.00 36.13 2.32
256 257 0.179145 CGGTCGCTGTCGGAGTAATT 60.179 55.000 0.00 0.00 36.13 1.40
257 258 1.310933 ACGGTCGCTGTCGGAGTAAT 61.311 55.000 0.00 0.00 36.13 1.89
258 259 1.968017 ACGGTCGCTGTCGGAGTAA 60.968 57.895 0.00 0.00 36.13 2.24
259 260 2.359107 ACGGTCGCTGTCGGAGTA 60.359 61.111 0.00 0.00 36.13 2.59
260 261 4.039357 CACGGTCGCTGTCGGAGT 62.039 66.667 0.00 0.00 36.13 3.85
261 262 3.669036 CTCACGGTCGCTGTCGGAG 62.669 68.421 0.00 0.00 36.13 4.63
262 263 3.733960 CTCACGGTCGCTGTCGGA 61.734 66.667 0.00 0.00 36.13 4.55
263 264 4.778415 CCTCACGGTCGCTGTCGG 62.778 72.222 0.00 0.00 36.13 4.79
326 327 2.348104 CGTGGTGGACGGATCTGGA 61.348 63.158 6.47 0.00 44.85 3.86
366 367 2.618185 ATGTGGTGATGGGGGCCT 60.618 61.111 0.84 0.00 0.00 5.19
432 433 2.203070 GGCGATCCTGGTGCGATT 60.203 61.111 13.41 0.00 0.00 3.34
470 475 1.977594 GCCATTTCCAGCGTGTACGG 61.978 60.000 6.55 0.00 40.23 4.02
486 491 2.372074 GGACGGGGTTATCTGGCCA 61.372 63.158 4.71 4.71 40.95 5.36
495 500 0.327259 GCTCTTAAAGGGACGGGGTT 59.673 55.000 0.00 0.00 0.00 4.11
506 511 4.789123 GGCCGGCCCGCTCTTAAA 62.789 66.667 36.64 0.00 0.00 1.52
560 568 0.468400 ACCCTCTACTCATCGGCCTC 60.468 60.000 0.00 0.00 0.00 4.70
968 997 3.857052 TGCCGATGAACTAATTCGTCTT 58.143 40.909 4.75 0.00 45.27 3.01
970 999 3.184581 GGATGCCGATGAACTAATTCGTC 59.815 47.826 0.00 0.00 44.39 4.20
1191 1229 3.250734 TTCGGGAGGGCCGGAAAA 61.251 61.111 5.05 0.00 46.63 2.29
1500 1544 4.023980 ACTCTGATTCCTCCGTGAATACA 58.976 43.478 0.00 0.00 35.15 2.29
1686 1730 4.039004 TCATTTTGGCAGTGCACATAAAGT 59.961 37.500 21.04 8.23 0.00 2.66
1782 1835 7.428826 AGGACAATCAGTTTCAGCTTAAAAAG 58.571 34.615 0.00 0.00 0.00 2.27
1799 1852 7.891183 ACGCATGTTAATAGATAGGACAATC 57.109 36.000 0.00 0.00 0.00 2.67
1870 1927 4.873827 GGCGGTTTAATCACTTCATACTCA 59.126 41.667 0.00 0.00 0.00 3.41
1918 1975 8.860088 CCCTTCTTCGATTTCCCAATATAAAAT 58.140 33.333 0.00 0.00 0.00 1.82
1927 1987 0.034477 GCCCCTTCTTCGATTTCCCA 60.034 55.000 0.00 0.00 0.00 4.37
2195 2255 1.134159 CCCATCTCTTGCCTCAAGGAG 60.134 57.143 0.00 4.02 41.33 3.69
2224 2284 8.928270 AATAAATACTACCAGAGACAAAGTCG 57.072 34.615 0.00 0.00 37.67 4.18
2233 2293 9.853177 AATCCAAGGAAATAAATACTACCAGAG 57.147 33.333 0.00 0.00 0.00 3.35
2270 2330 2.686915 CCCACAAGAAGGCAATCTCATC 59.313 50.000 0.00 0.00 0.00 2.92
2293 2353 2.739379 GGCAACTACTCTTGCTCTTGAC 59.261 50.000 4.06 0.00 45.07 3.18
2389 2449 4.620723 ACTCTCCTGTCCAATATGGTGTA 58.379 43.478 0.00 0.00 39.03 2.90
2530 2590 7.862873 GGACTCCAATTTCAGAAAAGTAACAAG 59.137 37.037 0.00 0.00 0.00 3.16
2533 2593 7.013369 ACAGGACTCCAATTTCAGAAAAGTAAC 59.987 37.037 0.00 0.00 0.00 2.50
2598 2658 2.554032 GGATTAACCGAATGGAGCCATG 59.446 50.000 2.18 0.00 39.21 3.66
2649 2709 0.179034 GTGATCCCAGCTGATCCACC 60.179 60.000 17.39 0.00 40.37 4.61
2652 2712 1.070445 CAGAGTGATCCCAGCTGATCC 59.930 57.143 17.39 5.65 40.37 3.36
2680 2740 0.821711 CAAAGTGTGCGGGGAAGGAA 60.822 55.000 0.00 0.00 0.00 3.36
2682 2742 1.106944 AACAAAGTGTGCGGGGAAGG 61.107 55.000 0.00 0.00 0.00 3.46
2898 2958 4.038642 GTGATTGTTCCTAGGGCAAAACAA 59.961 41.667 22.03 22.03 43.44 2.83
2975 3035 9.928618 TGTGGGGAAAATCATTAATCATTAGTA 57.071 29.630 0.00 0.00 0.00 1.82
2976 3036 8.837099 TGTGGGGAAAATCATTAATCATTAGT 57.163 30.769 0.00 0.00 0.00 2.24
2997 3057 7.281774 ACATGATAAAGCTGAGAAGTATTGTGG 59.718 37.037 0.00 0.00 0.00 4.17
3029 3089 4.742167 CACCATTAGATACGCTTGACTCTG 59.258 45.833 0.00 0.00 0.00 3.35
3031 3091 4.683832 ACACCATTAGATACGCTTGACTC 58.316 43.478 0.00 0.00 0.00 3.36
3092 3152 2.026449 CCTCTCCTTGCCAACTTCATCT 60.026 50.000 0.00 0.00 0.00 2.90
3103 3163 2.303311 ACTGTCCTAAACCTCTCCTTGC 59.697 50.000 0.00 0.00 0.00 4.01
3155 3216 7.772757 AGAATAGGAAGGAGAGTGCAATTTTAG 59.227 37.037 0.00 0.00 0.00 1.85
3297 3367 7.097192 TGACAAGTCACTATTGAGAATGGTAC 58.903 38.462 0.00 0.00 34.14 3.34
3331 3420 6.091169 CCCAAATACAGCACAAAATGATTGTC 59.909 38.462 0.00 0.00 32.09 3.18
3379 3468 2.033675 TGCTTGTGTTTCAGCATCACAG 59.966 45.455 0.00 0.00 41.86 3.66
3400 3489 4.812096 GCATACCATAAGAATCCATGCCCT 60.812 45.833 0.00 0.00 33.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.