>input_sequence_51828
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--------------------------------------------------------------------ATGGCCCTGGTG
GCGGCACA---------GCTACTACCTGATGGCGTCCTCGCCAGCGTCCTCCGGCGCCTGGCGCCGCGCAGCCTCGCCGC
ATCTCGCTGTGTCTGCAAAAGCTGGTGCGACGTCGTCGACGACTGGCGCCTGCTGCGGACGGATCTCCTCCCGCTATCCC
TCTCCGGGATCTTCTTCATGGAGGAGATTTTTCCGGCCCTCCCGAAATTCTTCGCGAGCCCGTCGATAGATGGCAAGATC
GCAGCCAGGCTCGACTACCTGGACACCAAATTTGAGGGCTATCTGCA-TATTATGGATCATTGCAATGGACTTCTCTTGC
TTTGGGATCAACTGGTGGTCAATCCAGCAACTCGACAATGGGTGCGTCTGCCTCATC-----CCCCCTGCGCCGGGTTGG
AGGACTTCGCCGACGACATGTGCCTTGCTTTCGACCCCACTGTGTCGCCCCATTACGAGGTACTTCTTCTTCCCAAAGTT
CCTCACAAGTTGGGTTCCATGACTGTATTCACGGAGGAATCAGAGTGGCCGCCTTCTTGGTATACAATACGTGTCTTCTC
TTCAAGGACATGGACATGGGAGGAGAGGGTGTTGGTCCGGAGAGGGGAGGCTGCAGGGGCCATTGCTGACATGCAGTCAC
CTAGGGCTAGGGAACCAGAGCATCGCTATACCGTCTACTGGAAAGGAGAACTTT--------ATGTGCACTGCCAAAATG
ACTCCATTATGCGGTACTCATTCA-CCCCTTAAGCAAACGATGATATTTATTATTGGGTTTTGGTTTTCCTCATCTTTTT
AAGCTGAAACTGATT----GTCCTATCTATTAACATGCGTTTTCTCTTCATTGACTTCACATTTGCAGCATAACCTTGTC
GAATGGTGAGTATGAAGTGATTAAACCGCCTACAAGCATGGATGAGTTTACAGAAT---TTTATATTGGGAAATCGAAGA
AGGGGCTGTACTGTGCTTTAATTTATAAAGATAGATCATACCGACTTCAGGTTTGGTTGCTTAGTGAATTGAGGGGTAAA
ATGGAGTGGGGGTTGAAGATTGACACCAGCCTTGTGCCAGTGGTGGCAATGTTTTCTTGGTTGTCTCACGAAGAAAATTC
CGGTCCGTGGATCTTACATGGTGGTAATTATGATGGAGATGGTAAAAAAGTGATCGTGGAAGATAAATGTGAATGGGACT
TCAACAATGGTATTCTCCTTGAGGCAAGAGATGGGGATGAATGCGACTTTGTCTCTGGTAGTATTTATTTCCTTGGATTT
CATCCGTATGATGAGATTGCCTTCTTGTGGGTGTCAAGAGCAAGAGTAGTTGCCTATCATTTGAGTAGCTCGAAAGTTCA
AGACTTGGGCATGTTACACGTACAATGTGTAGGAGATTCCTTTCCATATACACCATATTGGACAGGAGAGTTATTTGAAA
AGCATTAA------------------------------------------------------------------------
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------------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G249700
CTGTCTCATCACATTTATGTGGATGCAGACTTCGAGGACGCCTAGGGCCGTCTGCTAGGAGTCGGCCTCTCTGGAGGCCG
CCTGATAGGAGTCGGCCCACCTCGTGACCGCCTGCTGGGCTTTGCCGTCTCCTGGCGGCCGGCCGCTTGGACCAATCGGC
CGCGAGGAGGCGGTGCTTGGCTCTTTGAATCTTGAGGGAGCAGCCGCCCCTGACGTCTTGAAGCGCCATGGGGGGCCGAT
GAGGCTACCCGTGGCCAATTACTCCGACAGCGACCGTGAGGCCGGAGTGTCGTCAGGGGCGGCAAGGACGAGTCGTCATC
AGAGCTTCCAGATCCGTCCACCACGGGAAGAAGAGGCCGAGATGCAAGGCCCCCATCACCACATCCAATCACCGCGCCAG
TCTCATGGCCACGACCGGCCGCCGCCAACGCAAATCGCACCAGGATCGCCACCCAT----CTTCCTAATCTTGGCCGTAC
ACGCTGGAAATGGCCAGATAACCCCGTCCCTTTAA-GAGCGGGCCGGCCACCACCATGGCCGAAGCCGGCGATGGCG--G
CAGCAGCGAGGCCGATGAGTAGAGGGTTGGCGGC-GGGGTAGGTTTTCGGCCCCCGGGCCGCCACAGGAGGGACGACATG
GTGGAAGTGAACGCTCTGACATCAAGTGCAATTA----------------CTGTATGTACAGTGACCAAAGTGACTATCA
TCAACAAGT-T-TTTTTTCACTAATTTTTTTTTAATCCTAAAAGAGCAAGTTTAATGACGCATAATGCATTTTACTAAAT
TAA-AAAAAAACACTAAAC-TCCAGATGCATGCGGAGATCCTAACGATTTACGGCAGGCACGGTCAGTCAGCCGCACTCC
GCGGAACTAGAGTCGATTGCAAATCCTAATCGAATCCCGTCTCAGCTACACACATCCCACCAAGAGCCAGCCCCTCGATC
GATCCGTCACCATCAGCTAGCGCCCTCTCTGTTTTCAAGACGAATTAGTTCATCGGCATCCATGGACCATGGCCCTGGTG
GCGGCACA---------GCTACTACCTGATGGCGTCCTCGCCAGCGTCCTCCGGCGCCTGGCGCCGCGCAGCCTCGCCGC
ATCTCGCTGTGTCTGCAAAAGCTGGTGCGACGTCGTCGACGACTGGCGCCTGCTGCGGACGGATCTCCTCCCGCTATCCC
TCTCCGGGATCTTCTTCATGGAGGAGATTTTTCCGGCCCTCCCGAAATTCTTCGCGAGCCCGTCGATAGATGGCAAGATC
GCAGCCAGGCTCGACTACCTGGACACCAAATTTGAGGGCTATCTGCA-TATTATGGATCATTGCAATGGACTTCTCTTGC
TTTGGGATCAACTGGTGGTCAATCCAGCAACTCGACAATGGGTGCGTCTGCCTCATC-----CCCCCTGCGCCGGGTTGG
AGGACTTCGCCGACGACATGTGCCTTGCTTTCGACCCCACTGTGTCGCCCCATTACGAGGTACTTCTTCTTCCCAAAGTT
CCTCACAAGTTGGGTTCCATGACTGTATTCACGGAGGAATCAGAGTGGCCGCCTTCTTGGTATACAATACGTGTCTTCTC
TTCAAGGACATGGACATGGGAGGAGAGGGTGTTGGTCCGGAGAGGGGAGGCTGCAGGGGCCATTGCTGACATGCAGTCAC
CTAGGGCTAGGGAACCAGAGCATCGCTATACCGTCTACTGGAAAGGAGAACTTT--------ATGTGCACTGCCAAAATG
ACTCCATTATGCGGTACTCATTCA-CCCCTTAAGCAAACGATGATATTTATTATTGGGTTTTGGTTTTCCTCATCTTTTT
AAGCTGAAACTGATT----GTCCTATCTATTAACATGCGTTTTCTCTTCATTGACTTCACATTTGCAGCATAACCTTGTC
GAATGGTGAGTATGAAGTGATTAAACCGCCTACAAGCATGGATGAGTTTACAGAAT---TTTATATTGGGAAATCGAAGA
AGGGGCTGTACTGTGCTTTAATTTATAAAGATAGATCATACCGACTTCAGGTTTGGTTGCTTAGTGAATTGAGGGGTAAA
ATGGAGTGGGGGTTGAAGATTGACACCAGCCTTGTGCCAGTGGTGGCAATGTTTTCTTGGTTGTCTCACGAAGAAAATTC
CGGTCCGTGGATCTTACATGGTGGTAATTATGATGGAGATGGTAAAAAAGTGATCGTGGAAGATAAATGTGAATGGGACT
TCAACAATGGTATTCTCCTTGAGGCAAGAGATGGGGATGAATGCGACTTTGTCTCTGGTAGTATTTATTTCCTTGGATTT
CATCCGTATGATGAGATTGCCTTCTTGTGGGTGTCAAGAGCAAGAGTAGTTGCCTATCATTTGAGTAGCTCGAAAGTTCA
AGACTTGGGCATGTTACACGTACAATGTGTAGGAGATTCCTTTCCATATACACCATATTGGACAGGAGAGTTATTTGAAA
AGCATTAATTTATGTTCCCAGGGGTTTGCTTTCGATGCCATATGACTTGTAACTTACAGTGGTGAGTATGATTTTTTTAC
AAGAAATGCAGTTAACAGTTGAGTCTGGTCTTGTTACTTTTCTGAAATTGGAGTCCTGTCTTAATTTTAAATTCTTTTTT
AGCCACCTTATTTAGGACATGGCTCCATTCGGTTAATCCCTTCCCCGCCAGGATTCTGGACAAAACCCGGTGGATCAGCT
GGGATCACTCTGGCAGAGCTTCCTTCCCCGCACACTTTGTTTAGTGCATCCGGTTGCACATTCTTCCTCTGCATACTCTG
TGTATATACATCGACTTTTGTATATGAAAGCACAAGGAGCTGCAGTACCAACTTTGTAATACAAATCAACTTTGTGCAAG
GAGTTAGCAAAATTACGAGCCTACTTGTCATTTTTCTGAAAACCATTTTGTGGCCCAATCACAGGTTATTGCTTGGGTTG
TTTTGCCCTAGGAACAATCACATTATTTTAAGTGGACAAAGAAAATTAATTACGGAAAATACTACATTCCTTTCTACTAA
TGATTAATGATTTTCCCCACAATACTTCTCAGCTTTATCATGTTTTTCCAGAGTCAAGCGTATCTAATGGTGTTCCTACA
ATATCAAGTGTTTGACCAACTCGCTTTTATTAGATGAAGTTGGCAAGGAGAGGTTTAGGACAGTCACTACT-ACTAGAGG
AGCTCATGTTCTCTCCTAAAATTGCACTCTCCTTCCTATTCTGATACCACTAAATTTTAGGTTACATTTTTTCTTACAAA
CTCTGTGCATGCTCAACTGTGGTGCCAC------TGTTAATTGTCTTAAACAGGTGTCTTAAT---GTTCATGTAAATCA
GGCAGGGTACCATTCTCAATAGTGACTTG-------------------TCAAGTTCCTGGACAATCATTTTGTGCTGTAT
TTGGGGAGTGGAAACTTTTGTTGAGATCTGTGATGCTGAAACACAAGCA-GGGCATGGATTCTTATGGTATGCAACCA
>chr3B_270
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-----------------------------GCGACCGTGAGGCCGGGGTGTCGTCAGGGGCGGCGAGGACGAGTCATCATC
AGAGCTCCCAAATCCGTCCACCACGGGAAGAAGACGCCGAGATGCAGGGGCCCCATCACCACATCCAATCACCACACCAG
TCTCATGGCCACGGCCGGCCGCCGCCAACGCAGATCGCACCAGGATTGCCACCCAT----CTTCCTAATCTTGGTCGTAC
GC---GGAAACGGCCAAATGACCCCCGTCCCTTTGGGAGCGGGCTGGCCACCACCGTGGCCGAAGCCGGCGACGGCG--G
CAGCAGCAAGGCCGATTTGTAGAGGGTTGGCGGCCGGGGTAGGTTTTCAGCCCCTTGGCCGCCACAAGAGGGACGACATG
GTGGAAGTGAACGCTCTGACATCAAGTACAGTTACTGGAACCATCAATTTCTGTATGTAAAGCGACCAAAGTGACTATCG
TCAACAAGT-TTTTTTTTCACTAA-TTTTTTTTAATCCTAAAAGAGCAAGTTTAATGACGCATAATGCATTTTACTAAAT
TAA-AAAAAAACACTAAACGTCCTTATGCATGCGGAGATCCTAACGATTTACGGCAGGCACGGTCAGTCAGCCGCACACC
GCGCAACTAGAGTCGATTGCAAAACCTAATCGAATCCCGTCTCAGCTACACACATCCCACCAAGAGCCAGCCCCTCGATC
GATCCGTCACCATCAGCTAGCGCCCTCTCTGTTTTCGAAATGAATTAGTTCATCGGCATCCATGGACCATGGCCCTGGTG
GCGGCACA---------GCTGCTACCTGATGGCGTCCTCGCCAGCGTCCTCCGGCATCTCGCGCCGCGCAGCCTCGCCGC
ATCTCGCTGTGTCTGCAAAAGCTGGCGTGCCGTCGTCGACGACTGGCGCCTGCTGCGGACGGATCTCCTACCGCTATCCC
TCTCCGGGATCTTCTTCATGGAGGAGATCTTTCCGGCCCTCCCGAAATTCTTCGCGAGCCCGTCGATAGATGGCAAGATC
GCAGCCAGGCTCGACTACCTGGACACCAAATTTGAGGGTTATTTGCA-TATTATGGATCATTGCAATGGCCTTCTCTTGC
TTTGGGATCAACTGGTGGTCAATCCAGCAACTCGACAATGGGTGCGTCTGCCTCAGC-----CCCC-TGCGCCGGGTTGG
AGGATTTCGCCGACGACATGTGCCTTGCTTTCGACCCCACTGTGTCGCCCCATTACGAGGTACTTCTTCTTCCCGAAGTT
CCTCACAAGCTGGGTTCCATGACAGTATTCACGGAGGAATCAGAGTGGCCGCCTTCTTCGTATACAATAAGAGCCTTCTC
TTCAAGGACATGGACATGGGAGGAGAGGGTGTTGGTCCGGAGAGGGGAGGCCGCAGGGGCCATTGCTGAGATGCACTCAC
CTAGGGCTAGGGAACCAGAGCATCGCTATGCCGTCTACTGGAAAGGAGAGCTTT--------ATGTGCACTGCCAAAATG
ACTCCATTATGCGGTACTCATTCA-CCCCTTAAGCAAACAATGACATTTGTTATTGGGTTTTGATTTTGCCCATTTTC-T
AAGCTGAAACTCATC----GTCCTATCAATTAACATGCGTTTTCTCTCAATTGACTTCACATTTGCAGCATAACCTTGTC
GAATGGCGAGTATGAAGTTATTAAACCGCCTACAAGCATGGATGAGTTTACAGATT---TTTATATAGGGAAATCGAAGA
GGGGGCTGTACTGTGCTTTAATTTATAAAGATAGATCATACCGACTTCAGGTTTGGTTACTTAGTGAATTGAGGGGTAAA
ATGGAGTGGGGGTTGAAGATTGACACCAGCCTTGTGCCAGTGGTGGCAATGTTTTCTTGGTTGTCTCATGAAGAAAATTC
CGGTCCGTGGATCTTACATGGTGGTAATTATGATGGAGATGGTAAAAAAGTGATCGTGGATGATAAATGTGAATGGGACT
TCAACAATGGTATTATCCTTGAGGCAAGAGATGGGGATGAATGTGACTTTGTGTCTGATAGTATTTATTTCCTTGGATTT
CATCCGTATTATGAGATTGCCTTCTTGTGGGTATCAAGAGCAAGAGTAGTTGCCTATCATTTGAGTAGCTCGAAAGTTCA
AGACTTGGGCATGTTACACGTACAATGTGTAGGAGATTCCTTTCCATACACACCATATTGGACAGGAGAGTTATTTGAAA
AGCATTAATTTATGTTCCCAGGGGTTTGCTTTCGGTGCCATATGACTTGTAACTTACATTGGTGAGTATGATTTTTTTAC
AAGAAATGCAGTTAACAGTTGAGTCTGGTGTTATTACTTTTCTGAAATTGGAGTCCTGTCTTAATTTTAATTC--TTTTT
TACCCACCTATTTAGGATATGGCTCCGTT--GTTAATCCCTTCCCCGCCAGGATTCTGGACAAAACGCCGTCGATTAGCT
GGGATCACTCTGGCAGAGGATTCTTCCCCGCACACCTTGTTTGGTGCATCCGGTTGCACATTCTTCCTCTGCATACTCTG
TTTATATACATTGACTTTTATATATGAAAGCACAAGGAGCTGCAGTAGCAACTTGGTAATACAAATAAACTTTGTGCAAG
GAGTTAGCAAAATTACGAGCATACTTGACATTTTTCTGAAAACCTTTTGGTGGCACAGTCACAGGTT---GCTTGGGCTG
TTTTGTTCTGGGAACAATCACATTATTTTAAGTGGCCGAAGAAAATTAATTACAGAAAACACTACATCCCTTT---CTAA
TGATTAATTATTTTCTGCACAATACTTCTCAGCTTTATCATGTTTTTCTATAGTCAAGCGTATCTAATGGTGTTCCTACA
ATATCAAGTGTTTGACCAGCTCGCTTTTATGGACTGAAGTTGACAAGGAGAGGTTTAGGACAGTCACTACTTACTAGAGG
AGCTCATGTTCTCTCTTAAAATTGTA--CTCCTTGCTATTCTGATACCATTAAATTTTAGGTTACAATTTTTCTTACAAA
CTGTGTGCATGCTCAGCTGTGG-------------------TGTCTTAAACAGGTGTCTTTTTAACGTTCATGTAAATCG
GGCAGGATACCATTCTCAATAGTGACTTCTGAACAATCTAGTGACTTCTCAAGTTCCTGAACAATCATCTTGTGCTGTAT
TTGGGGAGCGGAAACTTTTGTTGAGATTTGTGATGCTGAAACACAAGGGGGGGCATGGATTCTTATGGCATGCAACCA
>chr3B_272
--------------------------------------------------------------------------------
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-------------------------------GACCGTGAGGCCGGAGTGTCGTCAGGAGCGGCGAGGATGAGTCGTCATC
AGAGCTCCCAGATCCGTCCACCACAGGAAGAAGACGCCGAGATGCAGGGCCCCCGTCACCACATCCAACCACCACGCCAG
TCTCATGGCCACGGCTGGCCGCCGCCAACGCAGATTGCACCAGGACCGCCACCCATATATCTTCCTAATCTCGGTCGTAC
GCGCTGGAAACGGCCAGATGACCCCCGTCCCTTTGGGAGCGGGTCGGCCACCACCGTGGCCGAAGCCGGCGACGGCGCGG
CAGCAGCAAGGCCGATGAGTAGAGGGTTGGCGGCGGGG-TAGGGTTTCAGCCCCCGGGCCGACACAGGAGGGACGACACT
GTGGAAGTGAACGCTCTGACATCAAGTACAATTACTGGAACCATCAATTTCTGTATGTACAGTGACCAAAGTGACTATCA
TCAACAAGTAT-TTTTTTCACTAAATTTTTTT--ATCCTAAAAGAGCAAGTTTAATGACGCATAATGCATTTTACTATAA
ATTTAAAAAAACACTAAACGTCCAGATGCATGCGGAGATCCTAACAATTTACGGCAGGCACGGTCAGTCAGCCGCACTCC
GTGGAACTAGAGTCGATTGCAAAACCTA----------------------------------------------------
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>chr3A_729
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----------------------------------ATCCTAAAAGAGCAAGTTTAATGACGCAAACTGCATTTTACTT---
-------AAAAAACTAAACGTCCAGATGCATGCGGATATTCTAACGATTAACGCTAGGCACGGTTAGTCAGCCGCACACC
GCGGAACTAGAGTCGATTGCAAATCCTAATCGAATCCCACCTCAGCTACACACATCCCACCGAGAGCCAGACCCTCGATC
GATCCGTCACCATCAGCTAGCGCCCTCTCTGTTTTTGAAACAAAATAGTTCATCGGCATCCATGGACCATGGCCCTAGTG
GCGGCACA---------GCTGCTACCTGATGGCGTCCTTGCTAGCGTCCTCCGGCACCTGGCGCCGCGCAGCCTCGCCGC
ATCTCGCTGTGTCTGCAAAAGCTGGTGTGTCGTCGTCGACGACTGGCGCCTGCTGTGGACGGATCTCCTCCCGCTATCCC
TCTCCGGGATCTTCTTCATGGAGGAGATCTTTCCGGCCCTCCCGAAATTCTTTGCGAGCCCGTCGATAGATGGCAAGATC
GCAGCCAGGCTCCGCTACCTGGACAGCAAATTTGAGGGTTATCTGCATTATTATGGATCATTGCAATGGACTGCTCCTGC
TTTGGGATCAACTGGTGGTCAATCCAGCAACTCGACAATGGGTGCGTC--------------------------------
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>chr3B_999
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------------------------------------------------------------------CCATGGCCCTTGCT
GTGGCGGCGCATCAGCTGCCAGTACCCGATGACATCCTGGCATGCGTCCTCCGCCGCCTCGCGCTGCGCAGCCTCGCTGC
GTCCCGTTGCGTCTGCAAAAGCTGGCGCGCTGTCATCGACGACCGCCGCCTGCTGTGGGCAGACCTCCTCCCGCTCTCGC
TCCATGGGATCTTCTTCATGGAGCAGCTCAACCCGACTCCCCCGAAATTCTTCGGGAGCCCGTTGATACAGCGCAAGATC
GCCGCCAAGCTTGACTACTTGGACACGGACTTTTTCGGCCATTTGTCC-ATCAAGGACCACTGCAACGGCCTACTCTTGC
TTTGGGATCAGCTCGTCGTTAATCCGGCGACACGGCAATGGGCGCGCCTGCCCCCTCCACCTCCCCATGCACCGGGATGG
AGGACTTAGGCGTTGACATGTGCATTGCCTTTGACCCCACCGTGTCGCCGCACTATGAGGTGCTTCTCCTTCCTTACGTC
CCTCGCATGTTTCAGAGCACGACAATGTTCACCAAGGAATCGGCATGGCCGCCCTCTCCGTATGCAATACGTGTCTTCTC
TTCAAGGACATGGCAATGGGAG-AGAACTCGTTGGTCCGGAGAGGGGAGGCGGCTGGGACCATTGCCGACATGCAGTCGG
ATT------GGCAACCAGAGCATCGCTACACCGTCTACTAGCAAGGAGCGCTTT--------ATGTGCATTGTCAAGATG
ACTCCATCATGCGGTATCCATTCACCACCTTAAACATGCATGCTCACTTAATTTTGGTTTTACTTTTTTAGTGTTTTTTT
TA-TTGAAACTCATCGATCGTATTACCCATCCTAATATGTTCTCTTTTCCAT---TTGATAATTGCAGCATAACCTTATC
CCATGGAAAGTATGAAGTGATTAAATCGCCAACAGGCAGTAAAACCAAGCGTGCTGATCTTTATCTAGGGAAATCAAGGA
AGGGGGTTTATTGCGCTTTAGTCCGTAATTGTAGGTCATACCGACTTCAGGTTTGGTTGCTTACCCAAGTATGTGGTAAA
ATGAAGTGGCGAGTGAAGATTGACATAAGCCTTTTGCCGGTGGTAGCAAAATTTTCTTGGATCTTTCGTGTTGAAAACTC
TCGGCCGTGGAGCTTGCATGAAGGGAATTGCAATAGAGATGGTGAAGAACCACTAGTGGAAGATAAACTTGAATAGGACT
TTGACAAGGCTACTGTTCTCGAGGGCGTAGATAATGCTGAAAGTGAGTATATGCATGGAGATATTTATTTCCTTGGGTTC
CATCCATACAAAGAGATTGCCTTCTTGTGGGTATCAAGAAAAAGAGTGGTTGCTTATCATTTGTGTAGCTCAAATGTTCA
AGATTTGGGCGAGTTACGTCTACAAAGTGTAGGAGATTCTTTTCCATACACACCATGTTGGACAGGAGAGTTATTTGAAA
AGAATTGATTGTGTGTACCCAG----------------------------------------------------------
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>chr3A_1021
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-----------------GCTAGTACCCGACGACATCCTGGCATGCGTCCTCGGCCACCTCGCGCCGCGCAGCCTCGCCGC
GTGCCGTTGCGTCTGCAAAAGCTGGCGCGCTGTCATCGACGACCGCCGCCTGCTGCGGGCAGACCTCCTCCCGCTCTCGC
TCCATGGGATCTTCTTCATGGAGCAGCTCAATCCGACTCCCCCGAAATTCTTCGGAAGTCCGTTGATACAGCGCAAGATC
TCCG-CAGGCTTGACTACTTGGACACGGACTTCGCCGGTCATTTGTC-TATCAAGGATCACTGTAACGGCCTTCTCTTGC
TCTGGGATCAAGTCGTCGTTAATCCGGCGACACGGCAATGGGTGCGT-------------------------CGGGATGG
AGGACTTAGGCGTCGACATGTGCCTAGCTTTTGACCCCACCGTCTCGACGCACTATGAGGTGCTTCTCCTTCCTTACGTT
CCTCGCATGCTT--GAGCACGACAATGTTCGCCAAGGAATCGGCATGGCCGCCCTCTCCGTATGCAATACGTGTCTTCTC
TTCAAGGACATGGCAATGGGAGGAGAAGTTGTTGGTCCAGAGAGGGGAGGCTGCTGGGACCATCGCCGACATGCAGTCAG
ATT------GGCAGCCAGAGCATCGCTACACCGTCTACTGGCAAGGAGCGCTTTATGTCATTATGTGCATTGTCAAAATG
ACTTTATCATGCGGTATCCACTCACCACCTTAAACATGCATGCTCACTTAATTTTGGTTTTTGCTTT-------------
--GCTGAAACTCATT----GTATTATCTATCATAATATGTTCTCTTTTCCAC---TTGGTAATTGCAGCATAACCTTATC
CCATGGAGAGTATGAAGTGATCAAATCGCCAACAGGCAGTAAAACCAAGCGTGCTGATCTTTATCTAGGGAAATCAAAGA
AGGGGGTTTATTGTGCTTTAGTTCGTAATTGCAGGTCATACCGACTTCGGGTTTGGTTGCTTACCGAAGTATGTGGTAAA
ATGAAGTGGCGAGTGAAGATTGACATAAGCCTTTTGTCGGTGGTAGCAAAATTTTCTTGGATCTCCCGTGTTGAAAACTC
TGGGCCGTGGATCTTTCATGAAGGGAATTGCAATAGAGATGGTGAAGAAGCACTAGTGGAAGATAAACTTGAATGGGACT
TTGACAAGGCTACTGTTCTTGAGGGCGTAGATAATGCTGAAAGTGAGTATATGCATGGAGATATTTATTTCCTTGGGTTC
CATCCATACAAAGAGATTGCCTTCTTGTGGGTATCAAGAACAAGAGTGGTTGCTTATCATTTATGTAGCTCGAATGTTCA
AGATTTGGACGAGTTATGTCTACAAAGTGTAGGAGATTCTTTTCCATACGCACCATGTTGGACAGGAGAGTTATTTGAAA
ATAATTGATTGTGTGTACCCA-----------------------------------------------------------
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>chr3A_1366
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-------------------------------------------GCGTCTGCCTCAGC-----CCCCCTGTGCCGGGTTGG
ATGACTTCGCCGACGACATGTACCTTGCTTTCGAACCCACTGTGTCGCCCCATTACAAGGTACTTCTTCTTCCCAAAGTT
CCTCACATGCTGGGTCCTGAGACAATATTCAGGGAGGAATCAGAATGGCCGCCTTCTTGGTATACAATACGAGTCTTCAC
TTCAAGGACATGGACATGGGAGGAGAGGTGC-TGGTCCGGAGAGGGGAGGCCGCAGGGGCCATTGCTGACATGCACTCAC
CTAGGGCTAGGGAACCAGAGCATCGCTATGCCGTCTATTGGAAAGGAGCGCTTT--------ATGTGCACTGCCAAAACG
AATCCATTATGCGGTACTCATTCA-CCCCTTAAGCAAACAATGACATTTATTATTGGGTTTTGATTTTCCCCATTTTG--
-AGTTGAAACTCATC----GCCCTATCAATTAACATGCATTTTCTCTCAATTGACTTCACATTTGCAGCATAACCTTGTC
GAATGGCGAGTATGAAGTTATTAAATCGCCTACAAGCATGGATGAGTTTACAGATT---TTTATATATGGAAATCGAAGA
GGGGGCTGTACTGTGCTTTAATTTATAAAGATAGATCATACCGACTTCAGGTTTGGTTACTTAGTGAATTGAGGGGTAAA
ATGGAGTGGGGGTTGAAGATTGACACCAGCCTTGTGCTAGTGGTGGCAATGTTTTCTTGGTTGTCTCACGAAGAAAATTC
CGTTCCGTGGATCTTACATGGTGGTAATTATGATGGAGATGGTAAAAAAGTGATCGTGGAAGAGCAATGTGAATGGGACT
TCAACAATGGTAGTATCCTTGAGACAAGAGATGGGGATGAATATGACTTTGTGTCTGGTAGTATTTATTTCCTTGGATTT
CATCCGTATTATGAGATTGCCTTCTTGTGGGTATCAAGAGCAAGAGTAGTTGCCTATCATTTGAGTAGCTTGAAAGTTCA
AGACTTGGGCATGTTACACGTACAATGTGTAGGAGATTCCTTTCCATACACACCATATTGGACAGGGGAGTTATTTGGAA
AGCATTGATTTATGTTCCGAGGGGTTTACTTTCGATGCCATAAGA----TAACTTACATTGGTGAGTATGATCTTTT-AC
AAGAAATGCGGTTAACAGTTTAGTCTGGTGTTATTACTTTTCTGAAATTAAAGTCCCGTCTTATTTTTAATTC--TTTTT
AGCCACCTTATTTAGGATATGGCTCCATACGGTTATTATCTCCCCCGCCGGGATTCTCGACAAAACCCTGTCGATCAACC
GGGATGACTCTCGCAGAGCATTCTTCCCCGTACACTTTGTTTAGTGCGGCTGGTTCCACATTCTTCCTCTGCATGCTCTG
TTTACATACATCGACTTTTGTATATGAAAGCACAAGCAGCTGTAGTACAAACTTTGTAATACAAATCAACTTAGTATAAG
GAGTTAGCAAAATTACGAGCCTACTTGTCATTTTTCTGAAAACCATTTTGTGGCCCAATCACAGGTTATTGCTTGGGCTG
TTTTGTCCTAGGAACAATCACATTATTTTAAGTGGACAAAGAAAATTAATTACAGAAAACACTACATCCCTTT---CTAA
TGATTAATGATTTTTCGCACAATTCTTCTAAGCTTTATCATGCTTTTCTATAGTCAAGCGTATCTAATGGTGTTCCTACA
ATA-CAAGTGTTTGACCAACTCGCTTTTATTGGATGAAGTTGACAAGGAGAGGTTTAGAACAGTCACTACTTACTAGAGG
AGCTCATGTTGTCTCTTAAAATTGCACTCTCCTTGCTATTCTGAAACCATTAAATTTTTTGTTACAATTTTTCTTACAAA
CTCTGTGCATGCTCAACTGTGGTGCCACTGTTAGTGTTAATTGTCTTAAACAGGTGTCTTAAT---GTTCATGTAAATCA
GGCAGGATACCATTCTCAATAGTGACTTG-------------------TCAAGTTCGTGAACAATCATTTTGTGCTGTAT
TTGGGGAGTGGAAACTTTTGTTGAGATTTGTGATGCTGAAACACAAGC-GGGGCATGGATTCTTATGGTATGCAACCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------S----------------
------S---------------------------S-----------S--------------------------S------
-------------S------------------S-----------------------------------------S-----
S---------S--------S-----SSS--S--SS--------------------S----------------S-------
-------S----------------------------------------S-------------------------------
---------------------------S----------------------------------------------------
------------------------S-------------------------------------------------------
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------------------------------------S-S-----------------------------------------
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-----------------------------S--------------------------------------------------
----------------------------S---------------------------------------------------
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-----------------------S--------------------------------------------------------
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-------------------------------------------------S------------------------------
---------------------------------------S----S------------------S------S---S-----
-----------S--------------------------------------------------------------------
------S-----------------------------------------------S-----------S-------------
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--------------S----------------------------S--------S---------------------------
---------S----------------------S-----------------------------------------------
------------------------------------------------S-------------------------------
----------------------------------------------------------S---------------------
-----------------------------S--S-------------------------------------S-SSS-----
-----------------S--------------------------------------------------S--S--------
-------------------S-S----------------------------------------------------------
-S------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
-----S-----------------------------------------------S-----S-------S-----SSS----
----------------S-------------------------------S-S-----------------------------
-------------------------------S----------S-------------------------------------
---------------S------------------S--------------S----------------S-------------
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------S----------------------------------------------------S--------------------
---------------------------S--------------------S-----------------------------
>forward_355
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---------------GTCCACCACGGGAAGAAGAG---------------------------------------------
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>reverse_1987
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TGGGAAATCGAAGA
AGGGGC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>forward_508
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AATGGCCAGATAACCCCGTC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_2255
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CTCCTTGAGGCAAGAGATGGG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>forward_999
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GCGCCCTCTCTGTTTTCAAG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_2709
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GGTGGATCAGCT
GGGATCAC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
