Multiple sequence alignment - TraesCS3D01G249300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G249300 chr3D 100.000 2933 0 0 1 2933 349108385 349111317 0.000000e+00 5417.0
1 TraesCS3D01G249300 chr3B 94.097 2287 98 23 1 2260 448478125 448480401 0.000000e+00 3441.0
2 TraesCS3D01G249300 chr3B 92.891 422 20 7 2521 2933 448480581 448481001 3.230000e-169 604.0
3 TraesCS3D01G249300 chr3A 94.546 2017 70 16 245 2254 467808237 467810220 0.000000e+00 3079.0
4 TraesCS3D01G249300 chr3A 96.624 237 7 1 2261 2497 697568805 697569040 2.740000e-105 392.0
5 TraesCS3D01G249300 chr3A 89.189 111 12 0 1 111 467807572 467807682 3.940000e-29 139.0
6 TraesCS3D01G249300 chr5D 97.510 241 5 1 2257 2497 167127055 167126816 7.570000e-111 411.0
7 TraesCS3D01G249300 chr2A 94.979 239 12 0 2259 2497 647764968 647764730 2.760000e-100 375.0
8 TraesCS3D01G249300 chr1B 93.590 234 13 2 2265 2497 500537407 500537175 6.020000e-92 348.0
9 TraesCS3D01G249300 chr4A 96.842 190 4 1 2261 2450 73936497 73936684 1.700000e-82 316.0
10 TraesCS3D01G249300 chr2B 82.143 84 10 4 177 257 591851720 591851639 1.890000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G249300 chr3D 349108385 349111317 2932 False 5417.0 5417 100.0000 1 2933 1 chr3D.!!$F1 2932
1 TraesCS3D01G249300 chr3B 448478125 448481001 2876 False 2022.5 3441 93.4940 1 2933 2 chr3B.!!$F1 2932
2 TraesCS3D01G249300 chr3A 467807572 467810220 2648 False 1609.0 3079 91.8675 1 2254 2 chr3A.!!$F2 2253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.034337 GTGGACAAACGAGTAGCCCA 59.966 55.0 0.00 0.0 0.00 5.36 F
132 133 0.034574 CCCCGTCCCATCAAATCACA 60.035 55.0 0.00 0.0 0.00 3.58 F
179 180 0.250793 ACCGGAACAATGATGCGGTA 59.749 50.0 25.41 0.0 39.93 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 2313 3.090532 ACCGCCCCATCCTTCTCC 61.091 66.667 0.0 0.0 0.00 3.71 R
1921 2413 3.092403 CACGCATCACACATCGGG 58.908 61.111 0.0 0.0 0.00 5.14 R
2158 2657 7.042925 CCCATCGTTTAGAGGATTTTTACTACG 60.043 40.741 0.0 0.0 31.12 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.943978 CGCCGGAGTGGGTTTCTCT 61.944 63.158 5.05 0.00 38.63 3.10
46 47 2.058675 CCGGAGTGGGTTTCTCTGT 58.941 57.895 0.00 0.00 36.80 3.41
50 51 1.070289 GGAGTGGGTTTCTCTGTTCGT 59.930 52.381 0.00 0.00 33.06 3.85
83 84 2.033372 TGTCAGTAGGTGGACAAACGA 58.967 47.619 0.00 0.00 40.80 3.85
91 92 0.034337 GTGGACAAACGAGTAGCCCA 59.966 55.000 0.00 0.00 0.00 5.36
121 122 2.236395 CAATAGATATCCACCCCGTCCC 59.764 54.545 0.00 0.00 0.00 4.46
132 133 0.034574 CCCCGTCCCATCAAATCACA 60.035 55.000 0.00 0.00 0.00 3.58
139 140 1.605710 CCCATCAAATCACATCGCTCC 59.394 52.381 0.00 0.00 0.00 4.70
140 141 2.291365 CCATCAAATCACATCGCTCCA 58.709 47.619 0.00 0.00 0.00 3.86
143 144 3.057969 TCAAATCACATCGCTCCAACT 57.942 42.857 0.00 0.00 0.00 3.16
148 149 5.551760 AATCACATCGCTCCAACTTTAAG 57.448 39.130 0.00 0.00 0.00 1.85
152 153 4.332543 CACATCGCTCCAACTTTAAGCATA 59.667 41.667 0.00 0.00 35.76 3.14
155 156 4.513442 TCGCTCCAACTTTAAGCATATGT 58.487 39.130 4.29 0.00 35.76 2.29
157 158 4.496341 CGCTCCAACTTTAAGCATATGTGG 60.496 45.833 4.29 1.59 35.76 4.17
164 165 3.469008 TTAAGCATATGTGGAGACCGG 57.531 47.619 0.00 0.00 0.00 5.28
168 169 1.134521 GCATATGTGGAGACCGGAACA 60.135 52.381 9.46 4.72 0.00 3.18
178 179 1.002624 ACCGGAACAATGATGCGGT 60.003 52.632 21.84 21.84 37.87 5.68
179 180 0.250793 ACCGGAACAATGATGCGGTA 59.749 50.000 25.41 0.00 39.93 4.02
221 222 2.734175 CGCTTCAATGCCGACACTAGTA 60.734 50.000 0.00 0.00 0.00 1.82
225 226 5.163754 GCTTCAATGCCGACACTAGTAAAAT 60.164 40.000 0.00 0.00 0.00 1.82
243 713 0.529833 ATGTCGTGTCTGCTCTGAGG 59.470 55.000 6.83 0.00 0.00 3.86
350 828 5.288952 GCTTCCACTTCTGTAATCGTACTTC 59.711 44.000 0.00 0.00 0.00 3.01
485 963 6.314648 TCAGCTGATTAAACATCATCTGTCAC 59.685 38.462 13.74 0.00 40.88 3.67
602 1081 6.258230 TGATTTGAAACCATCTGATGACAC 57.742 37.500 18.92 7.88 0.00 3.67
605 1084 7.611079 TGATTTGAAACCATCTGATGACACATA 59.389 33.333 18.92 8.74 0.00 2.29
644 1123 3.070159 TGTGATCCTCAGCTAGCAATACC 59.930 47.826 18.83 0.20 0.00 2.73
946 1437 1.194495 GGCGACGTACGATTACAAGG 58.806 55.000 24.41 2.59 45.77 3.61
947 1438 1.468054 GGCGACGTACGATTACAAGGT 60.468 52.381 24.41 0.00 45.77 3.50
948 1439 2.223249 GGCGACGTACGATTACAAGGTA 60.223 50.000 24.41 0.00 45.77 3.08
949 1440 3.031812 GCGACGTACGATTACAAGGTAG 58.968 50.000 24.41 0.00 45.77 3.18
1065 1557 1.376543 CAGGATTTGTGATGAGCGCT 58.623 50.000 11.27 11.27 0.00 5.92
1347 1839 4.101448 GCCGTCTCCCACATGCCT 62.101 66.667 0.00 0.00 0.00 4.75
1921 2413 1.334054 CGTGTACAAGTACAGGTCGC 58.666 55.000 19.47 6.43 45.61 5.19
1937 2429 2.819595 GCCCGATGTGTGATGCGT 60.820 61.111 0.00 0.00 0.00 5.24
1997 2489 8.920665 GGACGAGATAATGTTCATAATCTTCAG 58.079 37.037 0.00 0.00 0.00 3.02
2184 2683 7.042925 CGTAGTAAAAATCCTCTAAACGATGGG 60.043 40.741 0.00 0.00 0.00 4.00
2204 2703 3.537580 GGATGCCGTAATAAACAGGTGA 58.462 45.455 0.00 0.00 0.00 4.02
2247 2746 0.110486 GTGTTGCTTCTCCTTCCCCA 59.890 55.000 0.00 0.00 0.00 4.96
2254 2753 2.421248 GCTTCTCCTTCCCCATCTCTTG 60.421 54.545 0.00 0.00 0.00 3.02
2255 2754 1.207791 TCTCCTTCCCCATCTCTTGC 58.792 55.000 0.00 0.00 0.00 4.01
2256 2755 1.211456 CTCCTTCCCCATCTCTTGCT 58.789 55.000 0.00 0.00 0.00 3.91
2257 2756 1.140652 CTCCTTCCCCATCTCTTGCTC 59.859 57.143 0.00 0.00 0.00 4.26
2258 2757 1.211456 CCTTCCCCATCTCTTGCTCT 58.789 55.000 0.00 0.00 0.00 4.09
2259 2758 2.023015 TCCTTCCCCATCTCTTGCTCTA 60.023 50.000 0.00 0.00 0.00 2.43
2261 2760 3.181456 CCTTCCCCATCTCTTGCTCTAAG 60.181 52.174 0.00 0.00 37.76 2.18
2263 2762 1.419387 CCCCATCTCTTGCTCTAAGGG 59.581 57.143 0.00 0.00 38.29 3.95
2265 2764 1.487976 CCATCTCTTGCTCTAAGGGCA 59.512 52.381 0.00 0.00 36.78 5.36
2267 2766 3.401182 CATCTCTTGCTCTAAGGGCATC 58.599 50.000 0.00 0.00 36.78 3.91
2268 2767 2.470990 TCTCTTGCTCTAAGGGCATCA 58.529 47.619 0.00 0.00 36.78 3.07
2269 2768 2.840038 TCTCTTGCTCTAAGGGCATCAA 59.160 45.455 0.00 0.00 36.78 2.57
2270 2769 2.941720 CTCTTGCTCTAAGGGCATCAAC 59.058 50.000 0.00 0.00 39.54 3.18
2271 2770 2.305635 TCTTGCTCTAAGGGCATCAACA 59.694 45.455 0.00 0.00 39.54 3.33
2272 2771 2.877097 TGCTCTAAGGGCATCAACAA 57.123 45.000 0.00 0.00 34.56 2.83
2273 2772 3.370840 TGCTCTAAGGGCATCAACAAT 57.629 42.857 0.00 0.00 34.56 2.71
2274 2773 3.018856 TGCTCTAAGGGCATCAACAATG 58.981 45.455 0.00 0.00 38.50 2.82
2283 2782 0.450583 CATCAACAATGCAGAGCGCT 59.549 50.000 11.27 11.27 43.06 5.92
2284 2783 1.135489 CATCAACAATGCAGAGCGCTT 60.135 47.619 13.26 0.00 43.06 4.68
2287 2786 1.197492 CAACAATGCAGAGCGCTTACA 59.803 47.619 13.26 11.17 43.06 2.41
2288 2787 1.081892 ACAATGCAGAGCGCTTACAG 58.918 50.000 13.26 2.88 43.06 2.74
2289 2788 1.338105 ACAATGCAGAGCGCTTACAGA 60.338 47.619 13.26 0.00 43.06 3.41
2290 2789 1.326852 CAATGCAGAGCGCTTACAGAG 59.673 52.381 13.26 3.53 43.06 3.35
2297 2796 4.806571 CGCTTACAGAGGCGCTTA 57.193 55.556 7.64 0.00 44.64 3.09
2299 2798 0.924090 CGCTTACAGAGGCGCTTAAG 59.076 55.000 7.64 0.71 44.64 1.85
2300 2799 0.653114 GCTTACAGAGGCGCTTAAGC 59.347 55.000 17.83 17.83 36.74 3.09
2342 2841 3.985008 TCACTTAGCGTCTTTGTTAGCA 58.015 40.909 0.00 0.00 0.00 3.49
2343 2842 4.566004 TCACTTAGCGTCTTTGTTAGCAT 58.434 39.130 0.00 0.00 0.00 3.79
2344 2843 4.625742 TCACTTAGCGTCTTTGTTAGCATC 59.374 41.667 0.00 0.00 0.00 3.91
2345 2844 3.612860 ACTTAGCGTCTTTGTTAGCATCG 59.387 43.478 0.00 0.00 0.00 3.84
2347 2846 0.373716 GCGTCTTTGTTAGCATCGGG 59.626 55.000 0.00 0.00 0.00 5.14
2348 2847 0.373716 CGTCTTTGTTAGCATCGGGC 59.626 55.000 0.00 0.00 45.30 6.13
2365 2864 2.827604 GCTTCACAGCGCTAACAGA 58.172 52.632 10.99 2.45 35.91 3.41
2366 2865 1.148310 GCTTCACAGCGCTAACAGAA 58.852 50.000 10.99 11.00 35.91 3.02
2367 2866 1.531149 GCTTCACAGCGCTAACAGAAA 59.469 47.619 10.99 0.00 35.91 2.52
2369 2868 3.726190 GCTTCACAGCGCTAACAGAAATC 60.726 47.826 10.99 3.49 35.91 2.17
2370 2869 3.319137 TCACAGCGCTAACAGAAATCT 57.681 42.857 10.99 0.00 0.00 2.40
2371 2870 4.450082 TCACAGCGCTAACAGAAATCTA 57.550 40.909 10.99 0.00 0.00 1.98
2372 2871 5.011090 TCACAGCGCTAACAGAAATCTAT 57.989 39.130 10.99 0.00 0.00 1.98
2373 2872 6.144078 TCACAGCGCTAACAGAAATCTATA 57.856 37.500 10.99 0.00 0.00 1.31
2374 2873 6.209361 TCACAGCGCTAACAGAAATCTATAG 58.791 40.000 10.99 0.00 0.00 1.31
2375 2874 5.403766 CACAGCGCTAACAGAAATCTATAGG 59.596 44.000 10.99 0.00 0.00 2.57
2376 2875 4.387256 CAGCGCTAACAGAAATCTATAGGC 59.613 45.833 10.99 0.00 0.00 3.93
2377 2876 3.365220 GCGCTAACAGAAATCTATAGGCG 59.635 47.826 0.00 4.29 0.00 5.52
2379 2878 4.561105 GCTAACAGAAATCTATAGGCGCT 58.439 43.478 7.64 0.00 0.00 5.92
2380 2879 5.619309 CGCTAACAGAAATCTATAGGCGCTA 60.619 44.000 7.64 0.00 0.00 4.26
2381 2880 5.802956 GCTAACAGAAATCTATAGGCGCTAG 59.197 44.000 7.64 0.81 0.00 3.42
2382 2881 6.349445 GCTAACAGAAATCTATAGGCGCTAGA 60.349 42.308 7.64 7.41 0.00 2.43
2383 2882 5.637006 ACAGAAATCTATAGGCGCTAGAG 57.363 43.478 7.64 4.78 0.00 2.43
2384 2883 4.461081 ACAGAAATCTATAGGCGCTAGAGG 59.539 45.833 7.64 0.00 0.00 3.69
2385 2884 4.702612 CAGAAATCTATAGGCGCTAGAGGA 59.297 45.833 7.64 1.07 0.00 3.71
2388 2887 6.439058 AGAAATCTATAGGCGCTAGAGGAATT 59.561 38.462 7.64 0.33 0.00 2.17
2389 2888 7.616150 AGAAATCTATAGGCGCTAGAGGAATTA 59.384 37.037 7.64 0.00 0.00 1.40
2391 2890 7.719871 ATCTATAGGCGCTAGAGGAATTAAA 57.280 36.000 7.64 0.00 0.00 1.52
2392 2891 7.534723 TCTATAGGCGCTAGAGGAATTAAAA 57.465 36.000 7.64 0.00 0.00 1.52
2393 2892 7.959175 TCTATAGGCGCTAGAGGAATTAAAAA 58.041 34.615 7.64 0.00 0.00 1.94
2414 2913 5.622770 AAAGGAAATAAAGGTGTACGCTG 57.377 39.130 6.35 0.00 0.00 5.18
2415 2914 3.606687 AGGAAATAAAGGTGTACGCTGG 58.393 45.455 6.35 0.00 0.00 4.85
2416 2915 2.096980 GGAAATAAAGGTGTACGCTGGC 59.903 50.000 6.35 0.00 0.00 4.85
2417 2916 1.365699 AATAAAGGTGTACGCTGGCG 58.634 50.000 13.56 13.56 46.03 5.69
2429 2928 4.113815 CTGGCGCCCATCCTTCCA 62.114 66.667 26.77 0.00 30.82 3.53
2430 2929 3.643595 CTGGCGCCCATCCTTCCAA 62.644 63.158 26.77 0.00 30.82 3.53
2431 2930 3.140814 GGCGCCCATCCTTCCAAC 61.141 66.667 18.11 0.00 0.00 3.77
2432 2931 3.508840 GCGCCCATCCTTCCAACG 61.509 66.667 0.00 0.00 0.00 4.10
2433 2932 3.508840 CGCCCATCCTTCCAACGC 61.509 66.667 0.00 0.00 0.00 4.84
2434 2933 3.508840 GCCCATCCTTCCAACGCG 61.509 66.667 3.53 3.53 0.00 6.01
2435 2934 2.046314 CCCATCCTTCCAACGCGT 60.046 61.111 5.58 5.58 0.00 6.01
2436 2935 1.219664 CCCATCCTTCCAACGCGTA 59.780 57.895 14.46 0.00 0.00 4.42
2437 2936 0.810031 CCCATCCTTCCAACGCGTAG 60.810 60.000 14.46 7.67 0.00 3.51
2438 2937 0.810031 CCATCCTTCCAACGCGTAGG 60.810 60.000 14.46 16.56 0.00 3.18
2439 2938 0.108329 CATCCTTCCAACGCGTAGGT 60.108 55.000 21.84 9.56 0.00 3.08
2440 2939 0.108329 ATCCTTCCAACGCGTAGGTG 60.108 55.000 21.84 13.24 37.28 4.00
2441 2940 1.180456 TCCTTCCAACGCGTAGGTGA 61.180 55.000 21.84 10.12 40.93 4.02
2442 2941 1.012486 CCTTCCAACGCGTAGGTGAC 61.012 60.000 14.46 0.00 40.93 3.67
2443 2942 1.005867 TTCCAACGCGTAGGTGACC 60.006 57.895 14.46 0.00 40.93 4.02
2444 2943 1.746322 TTCCAACGCGTAGGTGACCA 61.746 55.000 14.46 0.00 40.93 4.02
2445 2944 1.301087 CCAACGCGTAGGTGACCAA 60.301 57.895 14.46 0.00 40.93 3.67
2446 2945 1.289109 CCAACGCGTAGGTGACCAAG 61.289 60.000 14.46 0.00 40.93 3.61
2447 2946 1.666872 AACGCGTAGGTGACCAAGC 60.667 57.895 14.46 5.09 0.00 4.01
2448 2947 3.179265 CGCGTAGGTGACCAAGCG 61.179 66.667 19.85 19.85 36.86 4.68
2449 2948 3.488090 GCGTAGGTGACCAAGCGC 61.488 66.667 18.08 18.08 34.58 5.92
2450 2949 2.813908 CGTAGGTGACCAAGCGCC 60.814 66.667 2.29 0.00 38.73 6.53
2460 2959 4.047059 CAAGCGCCTGCCCAACAG 62.047 66.667 2.29 0.00 46.77 3.16
2474 2973 4.634004 TGCCCAACAGAAAACAGATATACG 59.366 41.667 0.00 0.00 0.00 3.06
2475 2974 4.495844 GCCCAACAGAAAACAGATATACGC 60.496 45.833 0.00 0.00 0.00 4.42
2476 2975 4.035208 CCCAACAGAAAACAGATATACGCC 59.965 45.833 0.00 0.00 0.00 5.68
2477 2976 4.876107 CCAACAGAAAACAGATATACGCCT 59.124 41.667 0.00 0.00 0.00 5.52
2478 2977 5.220662 CCAACAGAAAACAGATATACGCCTG 60.221 44.000 0.00 0.00 36.53 4.85
2479 2978 3.871594 ACAGAAAACAGATATACGCCTGC 59.128 43.478 0.00 0.00 33.90 4.85
2480 2979 3.871006 CAGAAAACAGATATACGCCTGCA 59.129 43.478 0.00 0.00 33.90 4.41
2481 2980 4.512944 CAGAAAACAGATATACGCCTGCAT 59.487 41.667 0.00 0.00 33.90 3.96
2482 2981 4.752101 AGAAAACAGATATACGCCTGCATC 59.248 41.667 0.00 0.00 33.90 3.91
2483 2982 3.751479 AACAGATATACGCCTGCATCA 57.249 42.857 0.00 0.00 33.90 3.07
2484 2983 3.309961 ACAGATATACGCCTGCATCAG 57.690 47.619 0.00 0.00 33.90 2.90
2485 2984 1.998315 CAGATATACGCCTGCATCAGC 59.002 52.381 0.00 0.00 42.57 4.26
2486 2985 1.066573 AGATATACGCCTGCATCAGCC 60.067 52.381 0.00 0.00 41.13 4.85
2487 2986 0.979665 ATATACGCCTGCATCAGCCT 59.020 50.000 0.00 0.00 41.13 4.58
2488 2987 0.758734 TATACGCCTGCATCAGCCTT 59.241 50.000 0.00 0.00 41.13 4.35
2489 2988 0.758734 ATACGCCTGCATCAGCCTTA 59.241 50.000 0.00 0.00 41.13 2.69
2490 2989 0.758734 TACGCCTGCATCAGCCTTAT 59.241 50.000 0.00 0.00 41.13 1.73
2491 2990 0.107017 ACGCCTGCATCAGCCTTATT 60.107 50.000 0.00 0.00 41.13 1.40
2492 2991 0.309922 CGCCTGCATCAGCCTTATTG 59.690 55.000 0.00 0.00 41.13 1.90
2493 2992 1.683943 GCCTGCATCAGCCTTATTGA 58.316 50.000 0.00 0.00 41.13 2.57
2494 2993 1.607628 GCCTGCATCAGCCTTATTGAG 59.392 52.381 0.00 0.00 41.13 3.02
2495 2994 1.607628 CCTGCATCAGCCTTATTGAGC 59.392 52.381 0.00 0.00 41.13 4.26
2496 2995 2.573369 CTGCATCAGCCTTATTGAGCT 58.427 47.619 0.00 0.00 41.13 4.09
2497 2996 2.548904 CTGCATCAGCCTTATTGAGCTC 59.451 50.000 6.82 6.82 41.13 4.09
2498 2997 2.092807 TGCATCAGCCTTATTGAGCTCA 60.093 45.455 13.74 13.74 41.13 4.26
2499 2998 2.290093 GCATCAGCCTTATTGAGCTCAC 59.710 50.000 18.03 3.47 37.18 3.51
2500 2999 2.299993 TCAGCCTTATTGAGCTCACG 57.700 50.000 18.03 5.23 37.18 4.35
2501 3000 1.824852 TCAGCCTTATTGAGCTCACGA 59.175 47.619 18.03 2.52 37.18 4.35
2502 3001 2.233676 TCAGCCTTATTGAGCTCACGAA 59.766 45.455 18.03 12.39 37.18 3.85
2503 3002 2.606725 CAGCCTTATTGAGCTCACGAAG 59.393 50.000 18.03 20.65 37.18 3.79
2504 3003 1.936547 GCCTTATTGAGCTCACGAAGG 59.063 52.381 33.19 33.19 39.34 3.46
2505 3004 2.418746 GCCTTATTGAGCTCACGAAGGA 60.419 50.000 37.65 19.37 38.97 3.36
2506 3005 3.452474 CCTTATTGAGCTCACGAAGGAG 58.548 50.000 33.69 19.39 38.97 3.69
2512 3011 2.048222 CTCACGAAGGAGCGGCAA 60.048 61.111 1.45 0.00 35.12 4.52
2513 3012 1.667830 CTCACGAAGGAGCGGCAAA 60.668 57.895 1.45 0.00 35.12 3.68
2514 3013 1.630244 CTCACGAAGGAGCGGCAAAG 61.630 60.000 1.45 0.00 35.12 2.77
2515 3014 1.667830 CACGAAGGAGCGGCAAAGA 60.668 57.895 1.45 0.00 35.12 2.52
2516 3015 1.070786 ACGAAGGAGCGGCAAAGAA 59.929 52.632 1.45 0.00 35.12 2.52
2517 3016 0.951040 ACGAAGGAGCGGCAAAGAAG 60.951 55.000 1.45 0.00 35.12 2.85
2518 3017 1.503994 GAAGGAGCGGCAAAGAAGC 59.496 57.895 1.45 0.00 0.00 3.86
2549 3048 4.201628 CCGATCGCTTTACAAACTTCTCTG 60.202 45.833 10.32 0.00 0.00 3.35
2562 3061 2.608988 CTCTGGGTGGGGCTGAGT 60.609 66.667 0.00 0.00 0.00 3.41
2566 3065 2.282462 GGGTGGGGCTGAGTTGTG 60.282 66.667 0.00 0.00 0.00 3.33
2598 3098 2.282462 ACCGAGCAAAGCAAGGGG 60.282 61.111 7.47 0.00 33.10 4.79
2627 3128 7.199541 TGTAGATCAGCGTTAGATTAGGTAC 57.800 40.000 0.00 0.00 0.00 3.34
2654 3155 2.128853 AAACGTGCAATCACAGCCCG 62.129 55.000 0.00 0.00 43.28 6.13
2692 3193 3.940852 AGATGACGCAAAGTGCAATCATA 59.059 39.130 13.88 0.00 44.18 2.15
2711 3212 9.322773 CAATCATACAATCATAGTCAAGTCTGT 57.677 33.333 0.00 0.00 0.00 3.41
2753 3254 4.634012 ATTCCGATATCATTTTCCCGGA 57.366 40.909 0.73 0.00 43.36 5.14
2756 3257 3.644265 TCCGATATCATTTTCCCGGAAGA 59.356 43.478 0.73 0.00 42.31 2.87
2774 3275 5.003804 GGAAGAAAAGTAGATTGCTGACCA 58.996 41.667 0.00 0.00 0.00 4.02
2790 3292 4.522789 GCTGACCACCCTTGATTCTTAAAA 59.477 41.667 0.00 0.00 0.00 1.52
2791 3293 5.185828 GCTGACCACCCTTGATTCTTAAAAT 59.814 40.000 0.00 0.00 0.00 1.82
2795 3303 6.993079 ACCACCCTTGATTCTTAAAATGAAC 58.007 36.000 0.00 0.00 0.00 3.18
2823 3331 2.021457 CCGGAGAAAACAACAACCTGT 58.979 47.619 0.00 0.00 0.00 4.00
2826 3334 2.450160 GAGAAAACAACAACCTGTGCG 58.550 47.619 0.00 0.00 0.00 5.34
2861 3369 4.260375 GGTGTACGAGCTCTGCATTAAATG 60.260 45.833 12.85 0.00 0.00 2.32
2864 3372 3.201290 ACGAGCTCTGCATTAAATGAGG 58.799 45.455 12.85 0.00 0.00 3.86
2872 3380 4.280425 TCTGCATTAAATGAGGCACAACAA 59.720 37.500 0.00 0.00 32.06 2.83
2918 3426 1.066143 ACCGGATTTTGACTGCGATCT 60.066 47.619 9.46 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.876679 TGACATTAAACCAGAACACGAACA 59.123 37.500 0.00 0.00 0.00 3.18
46 47 5.120399 ACTGACATTAAACCAGAACACGAA 58.880 37.500 8.50 0.00 0.00 3.85
50 51 5.995282 CACCTACTGACATTAAACCAGAACA 59.005 40.000 8.50 0.00 0.00 3.18
83 84 5.448654 TCTATTGCATTCAAATGGGCTACT 58.551 37.500 4.98 0.00 36.90 2.57
91 92 6.438425 GGGGTGGATATCTATTGCATTCAAAT 59.562 38.462 2.05 0.00 35.56 2.32
121 122 3.376234 AGTTGGAGCGATGTGATTTGATG 59.624 43.478 0.00 0.00 0.00 3.07
132 133 5.008019 CACATATGCTTAAAGTTGGAGCGAT 59.992 40.000 1.58 0.00 39.23 4.58
139 140 5.220662 CGGTCTCCACATATGCTTAAAGTTG 60.221 44.000 1.58 0.00 0.00 3.16
140 141 4.876107 CGGTCTCCACATATGCTTAAAGTT 59.124 41.667 1.58 0.00 0.00 2.66
143 144 3.452990 TCCGGTCTCCACATATGCTTAAA 59.547 43.478 0.00 0.00 0.00 1.52
148 149 1.134521 TGTTCCGGTCTCCACATATGC 60.135 52.381 0.00 0.00 0.00 3.14
152 153 1.628340 TCATTGTTCCGGTCTCCACAT 59.372 47.619 0.00 0.00 0.00 3.21
155 156 1.678728 GCATCATTGTTCCGGTCTCCA 60.679 52.381 0.00 0.00 0.00 3.86
157 158 0.652592 CGCATCATTGTTCCGGTCTC 59.347 55.000 0.00 0.00 0.00 3.36
164 165 2.874701 AGCATCTACCGCATCATTGTTC 59.125 45.455 0.00 0.00 0.00 3.18
221 222 3.062763 CTCAGAGCAGACACGACATTTT 58.937 45.455 0.00 0.00 0.00 1.82
225 226 1.959848 CCTCAGAGCAGACACGACA 59.040 57.895 0.00 0.00 0.00 4.35
243 713 2.051882 GCGGCGCATTCATGTAGC 60.052 61.111 29.21 0.00 34.51 3.58
456 934 6.598503 AGATGATGTTTAATCAGCTGATCCA 58.401 36.000 28.83 21.25 42.41 3.41
485 963 7.970061 ACAATGTTTCAAGATATTGGTCAATCG 59.030 33.333 0.00 0.00 35.42 3.34
602 1081 9.869844 GATCACAAAATTAAATCCGAGACTATG 57.130 33.333 0.00 0.00 0.00 2.23
605 1084 7.112779 AGGATCACAAAATTAAATCCGAGACT 58.887 34.615 0.00 0.00 40.67 3.24
697 1176 3.490759 CCGCTGGACGTGTCATGC 61.491 66.667 0.00 4.63 41.42 4.06
778 1267 3.611986 TGTTGCTGTTTTTCTCTTTTGCG 59.388 39.130 0.00 0.00 0.00 4.85
985 1477 2.487934 CCCCATTGCTCAGATCTAACG 58.512 52.381 0.00 0.00 0.00 3.18
1686 2178 4.462280 CCGGCGTACACCTTCCCC 62.462 72.222 6.01 0.00 0.00 4.81
1821 2313 3.090532 ACCGCCCCATCCTTCTCC 61.091 66.667 0.00 0.00 0.00 3.71
1921 2413 3.092403 CACGCATCACACATCGGG 58.908 61.111 0.00 0.00 0.00 5.14
2156 2655 9.507280 CATCGTTTAGAGGATTTTTACTACGTA 57.493 33.333 0.00 0.00 31.12 3.57
2157 2656 7.490402 CCATCGTTTAGAGGATTTTTACTACGT 59.510 37.037 0.00 0.00 31.12 3.57
2158 2657 7.042925 CCCATCGTTTAGAGGATTTTTACTACG 60.043 40.741 0.00 0.00 31.12 3.51
2184 2683 4.634443 ACTTCACCTGTTTATTACGGCATC 59.366 41.667 0.00 0.00 0.00 3.91
2204 2703 7.119262 CACGTTACTTCCATCCAAGAAATACTT 59.881 37.037 0.00 0.00 39.70 2.24
2247 2746 3.044156 TGATGCCCTTAGAGCAAGAGAT 58.956 45.455 0.00 0.00 44.83 2.75
2254 2753 3.705043 CATTGTTGATGCCCTTAGAGC 57.295 47.619 0.00 0.00 0.00 4.09
2274 2773 2.170434 GCCTCTGTAAGCGCTCTGC 61.170 63.158 12.06 5.52 46.98 4.26
2276 2775 2.492090 CGCCTCTGTAAGCGCTCT 59.508 61.111 12.06 3.55 46.50 4.09
2281 2780 0.653114 GCTTAAGCGCCTCTGTAAGC 59.347 55.000 12.53 16.43 41.03 3.09
2317 2816 6.183360 TGCTAACAAAGACGCTAAGTGAAAAA 60.183 34.615 0.00 0.00 0.00 1.94
2318 2817 5.294799 TGCTAACAAAGACGCTAAGTGAAAA 59.705 36.000 0.00 0.00 0.00 2.29
2319 2818 4.812091 TGCTAACAAAGACGCTAAGTGAAA 59.188 37.500 0.00 0.00 0.00 2.69
2321 2820 3.985008 TGCTAACAAAGACGCTAAGTGA 58.015 40.909 0.00 0.00 0.00 3.41
2324 2823 3.000322 CCGATGCTAACAAAGACGCTAAG 60.000 47.826 0.00 0.00 0.00 2.18
2325 2824 2.927477 CCGATGCTAACAAAGACGCTAA 59.073 45.455 0.00 0.00 0.00 3.09
2326 2825 2.536365 CCGATGCTAACAAAGACGCTA 58.464 47.619 0.00 0.00 0.00 4.26
2328 2827 0.373716 CCCGATGCTAACAAAGACGC 59.626 55.000 0.00 0.00 0.00 5.19
2329 2828 0.373716 GCCCGATGCTAACAAAGACG 59.626 55.000 0.00 0.00 36.87 4.18
2342 2841 2.238847 TTAGCGCTGTGAAGCCCGAT 62.239 55.000 22.90 0.00 0.00 4.18
2343 2842 2.938086 TTAGCGCTGTGAAGCCCGA 61.938 57.895 22.90 0.00 0.00 5.14
2344 2843 2.434185 TTAGCGCTGTGAAGCCCG 60.434 61.111 22.90 0.00 0.00 6.13
2345 2844 1.639298 CTGTTAGCGCTGTGAAGCCC 61.639 60.000 22.90 0.00 0.00 5.19
2347 2846 1.148310 TTCTGTTAGCGCTGTGAAGC 58.852 50.000 22.90 1.82 0.00 3.86
2348 2847 3.681897 AGATTTCTGTTAGCGCTGTGAAG 59.318 43.478 22.90 12.31 0.00 3.02
2349 2848 3.664107 AGATTTCTGTTAGCGCTGTGAA 58.336 40.909 22.90 15.17 0.00 3.18
2350 2849 3.319137 AGATTTCTGTTAGCGCTGTGA 57.681 42.857 22.90 9.72 0.00 3.58
2351 2850 5.403766 CCTATAGATTTCTGTTAGCGCTGTG 59.596 44.000 22.90 7.31 0.00 3.66
2352 2851 5.533482 CCTATAGATTTCTGTTAGCGCTGT 58.467 41.667 22.90 0.00 0.00 4.40
2353 2852 4.387256 GCCTATAGATTTCTGTTAGCGCTG 59.613 45.833 22.90 2.42 0.00 5.18
2354 2853 4.561105 GCCTATAGATTTCTGTTAGCGCT 58.439 43.478 17.26 17.26 0.00 5.92
2355 2854 3.365220 CGCCTATAGATTTCTGTTAGCGC 59.635 47.826 0.00 0.00 0.00 5.92
2357 2856 4.561105 AGCGCCTATAGATTTCTGTTAGC 58.439 43.478 2.29 0.00 0.00 3.09
2358 2857 7.147143 TCTAGCGCCTATAGATTTCTGTTAG 57.853 40.000 2.29 0.00 0.00 2.34
2359 2858 6.151312 CCTCTAGCGCCTATAGATTTCTGTTA 59.849 42.308 2.29 0.00 0.00 2.41
2360 2859 5.047660 CCTCTAGCGCCTATAGATTTCTGTT 60.048 44.000 2.29 0.00 0.00 3.16
2361 2860 4.461081 CCTCTAGCGCCTATAGATTTCTGT 59.539 45.833 2.29 0.00 0.00 3.41
2362 2861 4.702612 TCCTCTAGCGCCTATAGATTTCTG 59.297 45.833 2.29 0.00 0.00 3.02
2363 2862 4.924625 TCCTCTAGCGCCTATAGATTTCT 58.075 43.478 2.29 0.00 0.00 2.52
2364 2863 5.646577 TTCCTCTAGCGCCTATAGATTTC 57.353 43.478 2.29 0.00 0.00 2.17
2365 2864 6.613153 AATTCCTCTAGCGCCTATAGATTT 57.387 37.500 2.29 0.00 0.00 2.17
2366 2865 7.719871 TTAATTCCTCTAGCGCCTATAGATT 57.280 36.000 2.29 0.00 0.00 2.40
2367 2866 7.719871 TTTAATTCCTCTAGCGCCTATAGAT 57.280 36.000 2.29 0.00 0.00 1.98
2391 2890 5.048294 CCAGCGTACACCTTTATTTCCTTTT 60.048 40.000 0.00 0.00 0.00 2.27
2392 2891 4.457949 CCAGCGTACACCTTTATTTCCTTT 59.542 41.667 0.00 0.00 0.00 3.11
2393 2892 4.007659 CCAGCGTACACCTTTATTTCCTT 58.992 43.478 0.00 0.00 0.00 3.36
2395 2894 2.096980 GCCAGCGTACACCTTTATTTCC 59.903 50.000 0.00 0.00 0.00 3.13
2396 2895 2.222953 CGCCAGCGTACACCTTTATTTC 60.223 50.000 3.35 0.00 34.35 2.17
2397 2896 1.735571 CGCCAGCGTACACCTTTATTT 59.264 47.619 3.35 0.00 34.35 1.40
2399 2898 1.087771 GCGCCAGCGTACACCTTTAT 61.088 55.000 14.22 0.00 42.09 1.40
2400 2899 1.738830 GCGCCAGCGTACACCTTTA 60.739 57.895 14.22 0.00 42.09 1.85
2401 2900 3.047877 GCGCCAGCGTACACCTTT 61.048 61.111 14.22 0.00 42.09 3.11
2406 2905 4.830765 GATGGGCGCCAGCGTACA 62.831 66.667 30.85 16.51 46.35 2.90
2412 2911 3.643595 TTGGAAGGATGGGCGCCAG 62.644 63.158 30.85 0.00 36.75 4.85
2414 2913 3.140814 GTTGGAAGGATGGGCGCC 61.141 66.667 21.18 21.18 0.00 6.53
2415 2914 3.508840 CGTTGGAAGGATGGGCGC 61.509 66.667 0.00 0.00 0.00 6.53
2416 2915 3.508840 GCGTTGGAAGGATGGGCG 61.509 66.667 0.00 0.00 0.00 6.13
2417 2916 2.862674 TACGCGTTGGAAGGATGGGC 62.863 60.000 20.78 0.00 0.00 5.36
2421 2920 0.108329 CACCTACGCGTTGGAAGGAT 60.108 55.000 39.51 18.88 33.16 3.24
2422 2921 1.180456 TCACCTACGCGTTGGAAGGA 61.180 55.000 39.51 29.17 33.16 3.36
2424 2923 1.012486 GGTCACCTACGCGTTGGAAG 61.012 60.000 39.51 30.04 0.00 3.46
2425 2924 1.005867 GGTCACCTACGCGTTGGAA 60.006 57.895 39.51 25.79 0.00 3.53
2426 2925 1.746322 TTGGTCACCTACGCGTTGGA 61.746 55.000 39.51 20.31 0.00 3.53
2427 2926 1.289109 CTTGGTCACCTACGCGTTGG 61.289 60.000 33.22 33.22 0.00 3.77
2429 2928 1.666872 GCTTGGTCACCTACGCGTT 60.667 57.895 20.78 0.00 0.00 4.84
2430 2929 2.048503 GCTTGGTCACCTACGCGT 60.049 61.111 19.17 19.17 0.00 6.01
2431 2930 3.179265 CGCTTGGTCACCTACGCG 61.179 66.667 3.53 3.53 34.50 6.01
2432 2931 3.488090 GCGCTTGGTCACCTACGC 61.488 66.667 11.95 11.95 39.49 4.42
2433 2932 2.813908 GGCGCTTGGTCACCTACG 60.814 66.667 7.64 0.00 0.00 3.51
2434 2933 1.741770 CAGGCGCTTGGTCACCTAC 60.742 63.158 12.39 0.00 0.00 3.18
2435 2934 2.662596 CAGGCGCTTGGTCACCTA 59.337 61.111 12.39 0.00 0.00 3.08
2443 2942 4.047059 CTGTTGGGCAGGCGCTTG 62.047 66.667 16.21 16.21 41.42 4.01
2444 2943 3.790416 TTCTGTTGGGCAGGCGCTT 62.790 57.895 7.64 0.00 45.08 4.68
2445 2944 3.790416 TTTCTGTTGGGCAGGCGCT 62.790 57.895 7.64 0.00 45.08 5.92
2446 2945 2.855514 TTTTCTGTTGGGCAGGCGC 61.856 57.895 0.00 0.00 45.08 6.53
2447 2946 1.007387 GTTTTCTGTTGGGCAGGCG 60.007 57.895 0.00 0.00 45.08 5.52
2448 2947 0.032540 CTGTTTTCTGTTGGGCAGGC 59.967 55.000 0.00 0.00 45.08 4.85
2449 2948 1.691196 TCTGTTTTCTGTTGGGCAGG 58.309 50.000 0.00 0.00 45.08 4.85
2450 2949 5.220662 CGTATATCTGTTTTCTGTTGGGCAG 60.221 44.000 0.00 0.00 46.34 4.85
2451 2950 4.634004 CGTATATCTGTTTTCTGTTGGGCA 59.366 41.667 0.00 0.00 0.00 5.36
2452 2951 4.495844 GCGTATATCTGTTTTCTGTTGGGC 60.496 45.833 0.00 0.00 0.00 5.36
2453 2952 4.035208 GGCGTATATCTGTTTTCTGTTGGG 59.965 45.833 0.00 0.00 0.00 4.12
2454 2953 4.876107 AGGCGTATATCTGTTTTCTGTTGG 59.124 41.667 0.00 0.00 0.00 3.77
2455 2954 5.727791 GCAGGCGTATATCTGTTTTCTGTTG 60.728 44.000 0.00 0.00 33.81 3.33
2456 2955 4.332819 GCAGGCGTATATCTGTTTTCTGTT 59.667 41.667 0.00 0.00 33.81 3.16
2457 2956 3.871594 GCAGGCGTATATCTGTTTTCTGT 59.128 43.478 0.00 0.00 33.81 3.41
2458 2957 3.871006 TGCAGGCGTATATCTGTTTTCTG 59.129 43.478 0.00 0.00 33.81 3.02
2459 2958 4.137116 TGCAGGCGTATATCTGTTTTCT 57.863 40.909 0.00 0.00 33.81 2.52
2460 2959 4.511454 TGATGCAGGCGTATATCTGTTTTC 59.489 41.667 0.00 0.00 33.81 2.29
2461 2960 4.450976 TGATGCAGGCGTATATCTGTTTT 58.549 39.130 0.00 0.00 33.81 2.43
2462 2961 4.060900 CTGATGCAGGCGTATATCTGTTT 58.939 43.478 0.00 0.00 33.81 2.83
2463 2962 3.657634 CTGATGCAGGCGTATATCTGTT 58.342 45.455 0.00 0.00 33.81 3.16
2464 2963 2.611473 GCTGATGCAGGCGTATATCTGT 60.611 50.000 0.00 0.00 39.41 3.41
2465 2964 1.998315 GCTGATGCAGGCGTATATCTG 59.002 52.381 0.00 0.00 39.41 2.90
2466 2965 1.066573 GGCTGATGCAGGCGTATATCT 60.067 52.381 5.22 0.00 46.35 1.98
2467 2966 1.363744 GGCTGATGCAGGCGTATATC 58.636 55.000 5.22 0.00 46.35 1.63
2468 2967 3.540211 GGCTGATGCAGGCGTATAT 57.460 52.632 5.22 0.00 46.35 0.86
2475 2974 1.607628 GCTCAATAAGGCTGATGCAGG 59.392 52.381 0.00 0.00 41.91 4.85
2476 2975 2.548904 GAGCTCAATAAGGCTGATGCAG 59.451 50.000 9.40 0.00 41.91 4.41
2477 2976 2.092807 TGAGCTCAATAAGGCTGATGCA 60.093 45.455 15.67 0.00 41.91 3.96
2478 2977 2.290093 GTGAGCTCAATAAGGCTGATGC 59.710 50.000 20.19 0.00 39.05 3.91
2479 2978 2.543012 CGTGAGCTCAATAAGGCTGATG 59.457 50.000 20.19 0.00 39.05 3.07
2480 2979 2.432146 TCGTGAGCTCAATAAGGCTGAT 59.568 45.455 20.19 0.00 39.05 2.90
2481 2980 1.824852 TCGTGAGCTCAATAAGGCTGA 59.175 47.619 20.19 4.34 39.05 4.26
2482 2981 2.299993 TCGTGAGCTCAATAAGGCTG 57.700 50.000 20.19 2.03 39.05 4.85
2483 2982 2.419297 CCTTCGTGAGCTCAATAAGGCT 60.419 50.000 30.77 0.00 41.88 4.58
2484 2983 1.936547 CCTTCGTGAGCTCAATAAGGC 59.063 52.381 30.77 15.00 34.97 4.35
2485 2984 3.452474 CTCCTTCGTGAGCTCAATAAGG 58.548 50.000 33.35 33.35 39.51 2.69
2495 2994 1.630244 CTTTGCCGCTCCTTCGTGAG 61.630 60.000 0.00 0.00 35.40 3.51
2496 2995 1.667830 CTTTGCCGCTCCTTCGTGA 60.668 57.895 0.00 0.00 0.00 4.35
2497 2996 1.227999 TTCTTTGCCGCTCCTTCGTG 61.228 55.000 0.00 0.00 0.00 4.35
2498 2997 0.951040 CTTCTTTGCCGCTCCTTCGT 60.951 55.000 0.00 0.00 0.00 3.85
2499 2998 1.790387 CTTCTTTGCCGCTCCTTCG 59.210 57.895 0.00 0.00 0.00 3.79
2500 2999 1.503994 GCTTCTTTGCCGCTCCTTC 59.496 57.895 0.00 0.00 0.00 3.46
2501 3000 1.973812 GGCTTCTTTGCCGCTCCTT 60.974 57.895 0.00 0.00 43.74 3.36
2502 3001 2.360475 GGCTTCTTTGCCGCTCCT 60.360 61.111 0.00 0.00 43.74 3.69
2509 3008 0.305922 CGGATCGATGGCTTCTTTGC 59.694 55.000 0.54 0.00 0.00 3.68
2510 3009 1.939974 TCGGATCGATGGCTTCTTTG 58.060 50.000 0.54 0.00 0.00 2.77
2511 3010 2.760374 GATCGGATCGATGGCTTCTTT 58.240 47.619 0.54 0.00 47.00 2.52
2512 3011 2.447244 GATCGGATCGATGGCTTCTT 57.553 50.000 0.54 0.00 47.00 2.52
2549 3048 2.282462 CACAACTCAGCCCCACCC 60.282 66.667 0.00 0.00 0.00 4.61
2562 3061 0.259065 TGGCAACTAACCACCCACAA 59.741 50.000 0.00 0.00 37.61 3.33
2598 3098 9.938670 CCTAATCTAACGCTGATCTACATATAC 57.061 37.037 0.00 0.00 0.00 1.47
2627 3128 4.373532 GTGATTGCACGTTTGGATTTTG 57.626 40.909 0.00 0.00 34.94 2.44
2654 3155 5.698832 CGTCATCTGATCAGGAATAGACTC 58.301 45.833 22.42 3.80 0.00 3.36
2711 3212 8.188799 CGGAATTGCTACGATATTCCTATAAGA 58.811 37.037 10.38 0.00 43.26 2.10
2716 3217 5.970317 TCGGAATTGCTACGATATTCCTA 57.030 39.130 10.38 0.00 43.26 2.94
2753 3254 4.762251 GGTGGTCAGCAATCTACTTTTCTT 59.238 41.667 0.00 0.00 0.00 2.52
2756 3257 3.074538 AGGGTGGTCAGCAATCTACTTTT 59.925 43.478 2.55 0.00 0.00 2.27
2774 3275 6.715264 ACTCGTTCATTTTAAGAATCAAGGGT 59.285 34.615 0.00 0.00 0.00 4.34
2790 3292 0.611062 TCTCCGGGACACTCGTTCAT 60.611 55.000 0.00 0.00 0.00 2.57
2791 3293 0.824595 TTCTCCGGGACACTCGTTCA 60.825 55.000 0.00 0.00 0.00 3.18
2795 3303 0.032952 TGTTTTCTCCGGGACACTCG 59.967 55.000 0.00 0.00 0.00 4.18
2823 3331 1.029681 ACACCATCGCTATCTACGCA 58.970 50.000 0.00 0.00 0.00 5.24
2826 3334 3.667430 GCTCGTACACCATCGCTATCTAC 60.667 52.174 0.00 0.00 0.00 2.59
2861 3369 6.533367 TGTTTAAGAAATGTTTGTTGTGCCTC 59.467 34.615 0.00 0.00 0.00 4.70
2864 3372 9.553418 AATTTGTTTAAGAAATGTTTGTTGTGC 57.447 25.926 0.83 0.00 0.00 4.57
2872 3380 7.930865 TGGCTGCTAATTTGTTTAAGAAATGTT 59.069 29.630 0.83 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.