>input_sequence_65119
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---------------------------------------------------ATGGGGGAGGAGAGGATGACGGCGAAGCC
TGAGGCCGTCGAGCTGCCAGGATTTGTGATGAGCGCTGACGAGGCGGAGCGCGCGGCCGCGGCGGCCGGGGTGGAGACGG
TGGAGGACCTGCTGCCCCTGCTGATCCCTTCCGCGATGCGGCGCGCGCGCCCCCCGATCTCGCGGTTCCCCGTGGGCGCC
GTCGGGCTGGGCGAGAGCGGGCGCGTGTACGCCGGCGTGAACCTCGAGTTCCTGGGCGCCCCTCTCTCCCAGGTGGTCCA
CGCCGAGCAGTTCCTCATCGCCAACGCCGCTGCCGCCGGGGAGCCCGCGCTGCGCGCCATCGCCGTCTCCCACATGCCTT
GCGGCCACTGCCGGCAGTTCCTCCAGGAGATCCGCGGCGCCGCCGGGATCCGCATCCTGGTGACCTCCGACGCCGCCGAC
GGCTGCGCGGCCGAGTGGCGCTCGCTGGCGTCGCTCCTGCCCCGCCCCTTCGGCCCCCATGACCTCCTCCCCAAGGACGC
CCCCCTCGTCCTCGAGCCGCACGACAACCGCCTCGGCGATCCCGTTGACGCCGTCGCCAATGGCTTCGCCGCCGGCGACC
TGGAGGGGCGCCTGAAGGATGCCGCGGAGGCGGCGGCGCGCGCGGCGCACGCGCCATACAGCGGGTGCCCGTCGGGGTTC
GCGGTGGCGGACGGCGAGGGGAAGGTGTACGCCGGGGGCTGCCTGGAGTCCGCGGCGTACAACCCGACGCTGGGCCCCGT
GCAGACGGCCATCATTGCGATGATTGCCGCCTCCGGCGGCTCCGCCGGCGATGTGGTGGCGGCGGCGCTGGTGGAGAAGG
ATGGGGCGGTGGCGGCGCAGGAGGCGACGGCCAGGGTCTTCCTGGCCGCTGTGGCGCCGCAGGCGAGCTTCCACGTGTAC
AAGTACAGGTCGCCCGATGTGTGA--------------------------------------------------------
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>chr3D_1_TraesCS3D01G249300
AAAGCAACGGGTTGTGTCAATGAGGACGCCGGAGTGGGTTTCTCTGTTCGTGTTCTGGTTTAATGTCAGTAGGTGGACAA
ACGAGTAGCCCATTTGAATGCAATAGATATCCACCCCGTCCCATCAAATCACATCGCTCCAACTTTAAGCATATGTGGAG
ACCGGAACAATGATGCGGTAGATGCTCTCAGGAGGCGTGCCGCTTCAATGCCGACACTAGTAAAATGTCGTGTCTGCTCT
GAG-----------------------------------------------------------------------------
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------------------------------------------------------------------------GCTACATG
AATGCGCCGCGCCGC--------TGGAGCGGCCCTGATCGGCAACCGCTTCGACTTCGCAAATCAAGGCCCTGAGCGGCG
ATCGCTTCCACTTCTGTAATCGTACTTCGCAAATTTTAATTAGACTGAGATACAAGATTTAACAGGTCAAGGTCCATAAA
ATCCAACGCCTTCCACTTCTCGTTTGGTACAGGCTAGCAATTGCGGGATCCTTTGGATCAGCTGATTAAACATCATCTGT
CACGATTGACCAATATCTTGAAACATTGTTCTTTTTTTTAGCA-CACATGTAAATAGCTTTCAGAAAAGAAATGGATTAA
GATCGAGTTGGCTAGCTTGATTTGAAACCATCTGATGACACATAGTCTCGGATTTAATTTTGTGATCCTCAGCTAGCAAT
ACCTGTGTGGCCACTTGCCATCCAAACCACTTCAGTTCAGCTGCAAAAGATTGCAG----------CATGACACGTCCAG
CGGACGATAATTATCCGTGCCCATCGTTGCAAAAGACTGAAAAGAGAGAAAGGAAGCGAAGCCCTGCGCAAAAGAG-AAA
AACAGCAACAACAAAGCACACGGATGTGTGTCCGTTATAAATACCCACACGCTACCACCACCGAGTTTCCCCCCT-CCCC
GCTCTTCCTCTCCTCCACTCTTTGAGGAAACATCCAAGCGCTCCCTCCATCTCAAGCGGCGACGTACGATTACAAGGTAG
-GAAAAAAAAAATCATAGAGTGACAACACAGTTTCGCGTTAGATCTGAGCAATGGGGGAGGAGAGGATGACGGCGAAGCC
TGAGGCCGTCGAGCTGCCAGGATTTGTGATGAGCGCTGACGAGGCGGAGCGCGCGGCCGCGGCGGCCGGGGTGGAGACGG
TGGAGGACCTGCTGCCCCTGCTGATCCCTTCCGCGATGCGGCGCGCGCGCCCCCCGATCTCGCGGTTCCCCGTGGGCGCC
GTCGGGCTGGGCGAGAGCGGGCGCGTGTACGCCGGCGTGAACCTCGAGTTCCTGGGCGCCCCTCTCTCCCAGGTGGTCCA
CGCCGAGCAGTTCCTCATCGCCAACGCCGCTGCCGCCGGGGAGCCCGCGCTGCGCGCCATCGCCGTCTCCCACATGCCTT
GCGGCCACTGCCGGCAGTTCCTCCAGGAGATCCGCGGCGCCGCCGGGATCCGCATCCTGGTGACCTCCGACGCCGCCGAC
GGCTGCGCGGCCGAGTGGCGCTCGCTGGCGTCGCTCCTGCCCCGCCCCTTCGGCCCCCATGACCTCCTCCCCAAGGACGC
CCCCCTCGTCCTCGAGCCGCACGACAACCGCCTCGGCGATCCCGTTGACGCCGTCGCCAATGGCTTCGCCGCCGGCGACC
TGGAGGGGCGCCTGAAGGATGCCGCGGAGGCGGCGGCGCGCGCGGCGCACGCGCCATACAGCGGGTGCCCGTCGGGGTTC
GCGGTGGCGGACGGCGAGGGGAAGGTGTACGCCGGGGGCTGCCTGGAGTCCGCGGCGTACAACCCGACGCTGGGCCCCGT
GCAGACGGCCATCATTGCGATGATTGCCGCCTCCGGCGGCTCCGCCGGCGATGTGGTGGCGGCGGCGCTGGTGGAGAAGG
ATGGGGCGGTGGCGGCGCAGGAGGCGACGGCCAGGGTCTTCCTGGCCGCTGTGGCGCCGCAGGCGAGCTTCCACGTGTAC
AAGTACAGGTCGCCCGATGTGTGATGCGTGCCTCCGGACCCTCTCTGGGGTGGGGAGAGATCGGACGAGATAATGTTCAT
AATCTTCAGGAA----TAATATGACGAGAAATAATCTTGTGCAGATGGGTGAGCTGTAAATTCCACATGGCGCTCGTGGT
TTGCTGATCGGACACCAAGAGCTGGGGCCTAC---TTACCATTCTTGTATTCATGTGTGTATTATCATATGAGAAAAATA
TATATTACTCGTACTACGTAGTAAAAATCCTCTAAACGATGGGATGCCGTAATAAACAGGTGAAGTATTTCTTGGATGGA
AGTAACGTGTTGCTTCTCCTTCCCCATCTCTTGCTCTAAGGGCATCAACAATGCAGAGCGCTTACAGAGGCGCTTAAGCG
AGATATTTTTGATTTTTTTTCACTTAGCGTCTTTGTTAGCATCGGGCTTCACAGCGCTAACAGAAATCTATAGGCGCTAG
AGGAATTAAAAAAGGAAATAAAGGTGTACGCTGGCGCCCATCCTTCCAACGCGTAGGTGACCAAGCGCCTGCCCAACAGA
AAACAGATATACGCCTGCATCAGCCTTATTGAGCTCACGAAGGAGCGGCAAAGAAGCCATCGATCCGATCGCTTTACAAA
CTTCTCTGGGTGGGGCTGAGTTGTGGGT-GGTTAGTTGCCACCGAGCAAAGCAAGGGG-TATATGTAGATCAGCGTTAGA
TTAGGTACAAAATCCAAACGTGCAATCACAGCCCGAGTCTATTCCTGATCAGATGACGCAAAGTGCAATCATACAATCAT
AGTCAAGTCTGTCTTATAGGAATATCGTAGCAATTCCGATATCATTTTCCCGGAAGAAAAGTAGATTGCTGACCACCCTT
-GATTCTTAAAAT------GAACGAGTGTCCCGGAGAAAACAACAACCTGTGCGTAGATAGCGATGGTGTACGAGCTCTG
CATTAAATGAGGCACAACAAACATTTCTTAAACAAATTAGCAGCCACCGGATTTTGACTGCGATCTCATCTTTGATCTCG
>chr3B_1
AAAGCAACGGGTTGTGTCAATGGGGGCCCCGGAGTGGGTTTCTCGGCTCCCATTTCGGTTTAATGTCAGTAGATGGACAA
ACGGATAGCCCCTTTGAATGCGGTAGATATTCACCCCGTTCTATCAAATCACGTCGCTCGGACATTAAACATGTGGGAAG
ACCGAAAC-ATGATGCGGCCGATGCTCTCAGCGGGCGTGCCGCTTTAATGCCGACATTAATGAAAGGTCGTGTCTT-TCT
GAG-----------------------------------------------------------------------------
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------------------------------------------------------------------------CCTACATG
AATACGCGGTGCCGCTGACGCTCTGGAGCAGCCCTGATCGGCAACCACTTCGACTTCACAAATTAAGGCCCTGAGCGGCG
ACTGCTTCCACTTCTGTAATCGTACTTTGCAAATTTTAATTAGACTGAGATACAAGATTTAACAGGTCAAGGTCTATGAA
ATCCAACGCCTTCCACTTCTCGTTTGGTACAGGCTAACAATTGCGGGATCATTGGGATCAGCTGATTAAACATCATCTGT
CATGATTGACCAATATCTTGAAACATTGTTCTTTTTTTCTTGAGCACATGTAAATAGCTTTCAGAAAAGAAATGGATTAA
GATCGAGTTGGCTAGCTTGATTTGAAACCATCTGATGACATATTGTCTCAGACTTAATTTTGTGATCCTCAGCTAGCAAT
ACTTGTGTGGCCAC-TGCCATCCAAACCACTTCAGTTCAGCTGCAAAAGACTATCTGTGCAGCGGCCATGACACGTCCAG
CGGACGATAATTATCCGTGCCCATCGTTGCAAAAGACTGAAAAGAGAGAAAGGAAGCGAAGCCCTG-GCAAAAGAG-AAA
AACAGCAACAACAAAGCACACGGATGTGTGTCCGTTATAAATACCCACACGCTACCACCACCGAGTTTCCCCCCTCCCCC
GCTCTTCCTCTCCTCCACTCTTTGAGGAAACATCCAAGTGCTCCCTCCATCTCAAGAGGCGACGTACGATTATACAAGGT
AGAAAAAAAAAATCATAGAGTGACAACACAGTTTCGAGTTAGATCTGAGCAATGGGGGAGGAGAGGATGACGGCGAAGCC
TGAGGCCGTCGAGCTGCCAGGATTTGTGATGAGCGCCGACGAGGCGGAGCGCGCGGCCGCGGCGGCCGGGGTGGAGACGG
TGGAGGACCTGCTTCCCCTGCTGATCCCTTCGGCGATGCGGCGCGCGCGCCCCCCGATCTCGCGGTTCCCCGTGGGCGCC
GTCGGGCTGGGCGAGAGCGGGCGCGTTTACGCCGGCGTGAACCTCGAGTTCCTGGGCGCCCCTCTCTCCCAGGTGGTCCA
CGCCGAGCAGTTCCTCATCGCCAACGCCGCCGCCGCCGGGGAGCCCGCGCTCCGCGCCATCGCCGTCTCCCACATGCCCT
GCGGCCACTGCCGGCAGTTCCTCCAGGAGATCCGCGGCGCCGCCGGGATCCGCATCCTGGTGACGTCCGACGCCGCTGAC
GGCTGCGCGGCTGAGTGGCGCACGCTGGCATCGCTCCTGCCCCGCCCATTCGGTCCCCACGACCTCCTCCCCAAGGACGC
CCCCCTCGTCCTCGAGCCGCACGACAACCGCCTCGGCGATCCCGTTGACGCCGTCGCCAATGGCTTCGCCGCCGACGACC
TGGAGGGGCGCCTGAAGGATGCCGCGGAGGCGGCGGCGCGTGCGGCGCACGCGCCGTACAGCGGCTGCCCGTCGGGCTTC
GCGGTGGCGGACGGCGAAGGGAAGGTGTACGCCGGGGGCTGCTTGGAGTCCGCGGCGTACAACCCGACGCTGGGTCCCGT
GCAGACGGCCATCATTGCGATGATTGCCGCCGGAGGCGGCTCCGCTGGCGATGTGGTGGCGGCGGCGCTGGTAGAGAAGG
ATGGGGCGGTGGCGGCGCAGGAGGCGACGGCCAGGGTCTTCCTGGCCGCTGTGGCGCCGCAGGCGAGCTTCCACGTGTAC
AAGTACAGGTCGTCCGATGTGTGATGCGCGCCTCCGGACCCTCTCTGGGGTGGGGAGAGATCGGACGAGATAATGTTCAT
AATCTTCACGAA----TAATATGACGAGAAATAATCTTGTGCAGATGGGTGAGCTGTAAATTCCACATGGCGATCGTGGT
TTGCTGATCGGACACCAAGAGCTGGGACCTACTTATTACCATTCTTGTATTCATGTGTGTATTATTATATGAGAAAAATA
TATATTACTCGTAC---GTAGTAAAAATCCTCTAAACGATGG-ATGCCGTAATAAACAGGTGGAGTATTTCTTGGATGGA
AGTAACGTGTTGCTTCTCCTTCCCCGTCTCTTTGCTCTACGTCGTTGTTTCAACCAATTACACACTACAGCTCACGACTT
GGGAGTAGATATATAGGATACATAAAAAAAAAATTAGAGCTCGTGCTGCACGCACTGCGGGGCCTGTTGTGGACACCGCT
GATTATCCAGCCAATCAGGCAATCGGCCCATTTCTTCCCTGCAAGTCTCAAACACATG----------------------
----------------------------------------------------------ATCGATCCGATCGCTTTACAAA
CTTCTCTTGGTGGGGCTGAGCTGTAGGTGGGTTAGTTGCCACCGAGCAAAGCAAGGGTATATATGTAGATCAGCGTTAGA
TTAGGTAGAAAATCCAAACGTGCAATCACAGCCCAAGTCTATTCCTGATCAGATGACGCAAAGTGCAATCATCCAATCAT
AGTCAAGTCTGCCTTACATGAATATCGTAGCAATTCCGATATCATTTTCCCGGGAG-AAAGTAGATTGCTGACCGCCCTT
AGATTCTTAAACAACGCAAGAATGAGTGTCCCGGAGAAAACAACAACCTGCGCATAGATAGCGATGGTGTACGAGCTCTG
CATTAAATCAGTCACAACAGACATTTCTTAAACAAATTAGCAGCCACCGGATTTTGACTGCGATCCCATCTTTGATCTCG
>chr3A_1
AAAGCAGCGGGTTGTGTCAATGAGGACGCCGGAGTGGATTTCTCGGCTCGCGTTCTGGTTTAATGTTAGTAGGCGGACAA
ATGGGTAGCCTGTTTGAATGCAACAGATATCTGCCTACTCCAAGTAGAAAT-----------------------------
-------------------CGATGCTCTCAGGAGGCATGCCGCTTCAATGCCGACACTAGTGAAAGGTCGTACCTGCTTT
GAGAGCAAGTACAATAGTGGGCTTATAGCCCGCTTACGTGGCACTTTTGTTTATGTGGAGAAAAGATATGTGAAAAAGTA
AGGGGAGTAGGCTTTCATGCAAGAGCCCAGCTATATGTGTTCCTAGGCAAATACAATTAATGTGAAGAAAGAAAAAGAGA
GAAGATAGAAAAAGATACTAATGTAATAACCAACCTAAAAAAAGAGACCAACCCAAGGGCTAACCTTCGTTGGCATTTTT
TTTATAGGAGAAACTCCGTGAGCACCTGCATCTGAACCGGGACTCGAACTCGGATGGGCTGGCAGCAACCCCAGCTGCCC
AGCCAACGGGTCAACACCCCATCCTTAATGTAATAACCAAGCTTATAGCCCACACTATTATATGAGTGAATACGAATGAT
GACTATATATGACATGAAAGTTTCATATAGCGAGCAGCTGGCTATACTATTAACCATGCTGTGAGGCTACATCCTACATG
AATGCGTCGCGCCGC--------TGGAGCGGCCCTGACGGGCATCTGCTTCGACTTCGCAAATCAAGGTCCTGAGCGGCG
ACCGCTTCCACTTCTGTAATCGTACTTTGCAAATTTTAATTAGAATGAGATACAAGATTTAACAGGTCAAGGTCCATAAA
ATCCAACGCCTTCCACTTCTCATTTGGTACAGGCTAGCAATTGCGGGATCCTTGGGATCAGCTGATTGAACATCATCTGT
CATGATTGACCAATATCTTGAAACATTGTTCTTTTTTTTAGCA-CACATGTAAATAGCTTTTAGAAAAGAAATGGATTAA
GATCGAGTTGGCTACCTTGATTTGAAACCATCTGATGACATATTGTCTCGGATTTAATTTTGTGATCCTCAGCTAGCAAT
ACTTGTGTGGCCACTTGCCATCCAAACCACTTTCGTTCAGCTGCAAAAGATTGCA----------CCATGACACGTCCAG
CGGACGATAATTATCTGTGCCCATCGTTGCAAAAGACTGAAAAGAGAGAAAGGAAGCGAAGCCCTG-GCAAAAGAGAAAA
AACAGCAACAACAAAGCAGACGGATGTGTGTCCGTTATAAATACCCACACGCTACCACCACCGAGTTTCCCCC-TCCCCC
GCTCTTCCTCTCCTCCACTCTTTGAGGAAACATCCAAGCGCTCCCTCCATCTCAAGCGGCCAAGTACGATTATACAAGGC
AGG-AAAAAAAATCATAGAGTGACAACACAGTTTCGAGTTAGATCTGAGCAATGGGGGAGGAGAGGATGACGGCGAAGCC
CGAGGCCGTCGAGCTGCCAGGATTTGTGATGAGCGCCGACGAGGCGGAGCGCGCGGCCGCGGCGGCCGGCGTGGAGACGG
TGGAGGACCTGCTGCCCCTGCTGATCCCTTCCGCGATGCGGCGCGCGCGCCCCCCGATCTCGCGGTTCCCCGTGGGCGCC
GTCGGGCTGGGCGAGAGTGGGCGCGTCTACGCCGGCGTGAACCTCGAGTTCGTCGGCGCCCCTCTCTCCCAGGCGGTCCA
CGCCGAGCAGTTCCTCATCGCCAACGCCGCTGCCGCCGGGGAGCCCGCGCTCCGCGCCATCGCCGTCTCCCACATGCCCT
GCGGCCACTGCCGGCAGTTCCTCCAGGAGATCCGCGGCGCCGCCGGGATCCGCATCCTGGTGACCTCCGACGCCGCCGAC
GGCTGCGCGGCCGAGTGGCGCTCGCTGGCGTCGCTCCTGCCCCGCCCCTTCGGCCCCCACGACCTCCTCCCCAAGGACGC
CCCCCTCGTCCTCGAGCCGCACGACAACCGTCTCGGCGATCCCGTTGACGCCGCCGCCAATGGCTTCGCCGCCGGCGACC
TGGAGGGGCGCCTGAAGGATGCCGCGGAGGCGGCGGCGCGCGCGGCGCACGCGCCGTACAGCGGGTGCCCGTCGGGGTTC
GCGGTGGCGGACGGTGAAGGGAAGGTGTACGCCGGGGGCTGCCTGGAGTCCGCGGCGTACAACCCGACGCTGGGCCCCGT
GCAGACGGCCATCATTGCGATGATTGCCGCCTCCGGCGGCTCCGCCGGCGATGTGGTGGCGGCAGCGCTGGTAGAGAAGG
AGGGGGCGGTGGCGGCGCAGGAGGCGACGGCCAGGGTCTTCCTGGCCGCTGTGGCGCCGCAGGCGAGCTTCCACGTGTAC
AAGTACAGGTCGTCCGATGTGTGATGCGCAGCAGCA-----------------GGCGAGATCGGACGAGATAATGTTCAT
AATCTTCAAGAAAGAATAATATGACGGGAAATAATCTTGTGCAGATGGGTGAGCTGTAAATTCCACATGGCGCTCGTGAT
TCGCTGATGGGACACCGAGAGCCGGGGCCTAC---TTACCATTCTTGTGTTCATGTGTGTATTATTATGAGG----AAAA
TATAATACTCCTAGA----AGTAAAAATTCTCTGAACGG-----TGCCGTAATAAACAGGTGGAGTATTTCTTGGACGGA
AGTAATGCGTTGCTTCTCCTTCCCCGTCTCTT------------------------------------------------
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>SNPs
--------------------------------------------S-S---S-----------------------------
---S-------S-----------------------------S----------S------SS--S----S---S--S-S--
----S---S---------SS-----------------------------------------S---S--------------
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------------------------------------------------------------------------S-------
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-S-------------------------S----------------------------------------------------
-----------------------------------------------------S--------------------------
--S-----------------------------------------------------------------------------
----------------------------------------S--S------------------------------------
--S----------------------------------------------------S------------------------
------------------------------------------------------------------S-------------
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------------------------------------------------------------------------S-SSSSSS
------------------------------------S-------------------------------------------
------------------------------------S-------------------------------------------
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--------------------------S-----------------------------------------------------
---------------------------------------------------S--------------------------S-
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-----------------------------------------------------------S--------------------
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-------------------------------------------------------S------------------------
-----------------S--------------------------------------------------------------
------------------------------------------------------------------------S-------
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------------S---------------S---------------------------------------------------
--------S-----------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------SSS-------------------------S-------------------S-----------------
-------------------------S------SSSSSS-S-S-S-SSSSSSSS-SS-SSS-SS--SSSS--S-SSS-SSS
S-SSS-SSS-SSS-SSSS-S--SSS-SSSSSSS-SSS---SSSS-SSSSSSSSS-SSSSSSSSSSS-SSSSSSSSS-SSS
SSSS--SS-SSS-SSS-SSS--SSS-SS-SS-SSSS---SS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
-------S------------S---S--------------------------------S----------------------
-------S--------------------------S-------------------------------------S-------
-----------S----S-S----------------------------------S--S-----------------S-----
-----------SS---------S---------------------------S--S--------------------------
--------S--S-------S---------------------------------------------S--------------
>forward_92
------------------------------------------------------------------------GTGGACAA
ACGAGTAGCCCA--------------------------------------------------------------------
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>reverse_2313
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------------------------------------------------------------------------GGAGAAGG
ATGGGGCGGT----------------------------------------------------------------------
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>forward_133
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---------------------------------CCCCGTCCCATCAAATCACA---------------------------
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>reverse_2413
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------------CCCGATGTGTGATGCGTG--------------------------------------------------
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>forward_180
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ACCGGAACAATGATGCGGTA------------------------------------------------------------
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>reverse_2657
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----------------CGTAGTAAAAATCCTCTAAACGATGGG-------------------------------------
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