Multiple sequence alignment - TraesCS3D01G242100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G242100 chr3D 100.000 4280 0 0 1 4280 336840812 336836533 0.000000e+00 7904
1 TraesCS3D01G242100 chr3D 87.793 426 48 4 114 537 508380037 508380460 2.970000e-136 496
2 TraesCS3D01G242100 chr3A 94.831 3173 116 24 593 3722 454175926 454172759 0.000000e+00 4907
3 TraesCS3D01G242100 chr3A 96.408 529 17 2 3721 4249 668870043 668870569 0.000000e+00 870
4 TraesCS3D01G242100 chr3A 95.564 541 22 2 3723 4263 708252785 708252247 0.000000e+00 865
5 TraesCS3D01G242100 chr3A 86.406 434 53 6 114 543 219342939 219342508 1.800000e-128 470
6 TraesCS3D01G242100 chr3A 86.406 434 53 6 114 543 334784960 334784529 1.800000e-128 470
7 TraesCS3D01G242100 chr3B 94.633 2236 82 23 565 2767 434673861 434671631 0.000000e+00 3430
8 TraesCS3D01G242100 chr3B 96.154 780 24 3 2949 3722 434670960 434670181 0.000000e+00 1269
9 TraesCS3D01G242100 chr3B 94.340 106 6 0 2744 2849 434671409 434671304 3.420000e-36 163
10 TraesCS3D01G242100 chr6A 97.778 540 11 1 3719 4257 27651738 27652277 0.000000e+00 929
11 TraesCS3D01G242100 chr7D 87.703 431 51 2 114 543 548615946 548616375 6.390000e-138 501
12 TraesCS3D01G242100 chr5D 88.917 397 40 4 140 535 418626256 418625863 1.790000e-133 486
13 TraesCS3D01G242100 chr4A 87.028 424 51 3 114 537 687329803 687329384 3.870000e-130 475
14 TraesCS3D01G242100 chr4A 86.682 428 51 6 114 537 403171754 403172179 1.800000e-128 470
15 TraesCS3D01G242100 chr4A 86.417 427 54 4 114 537 304782099 304782524 8.380000e-127 464
16 TraesCS3D01G242100 chr2B 86.682 428 51 6 114 537 702727993 702728418 1.800000e-128 470
17 TraesCS3D01G242100 chr6D 91.667 84 7 0 13 96 431110286 431110203 2.700000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G242100 chr3D 336836533 336840812 4279 True 7904.000000 7904 100.000000 1 4280 1 chr3D.!!$R1 4279
1 TraesCS3D01G242100 chr3A 454172759 454175926 3167 True 4907.000000 4907 94.831000 593 3722 1 chr3A.!!$R3 3129
2 TraesCS3D01G242100 chr3A 668870043 668870569 526 False 870.000000 870 96.408000 3721 4249 1 chr3A.!!$F1 528
3 TraesCS3D01G242100 chr3A 708252247 708252785 538 True 865.000000 865 95.564000 3723 4263 1 chr3A.!!$R4 540
4 TraesCS3D01G242100 chr3B 434670181 434673861 3680 True 1620.666667 3430 95.042333 565 3722 3 chr3B.!!$R1 3157
5 TraesCS3D01G242100 chr6A 27651738 27652277 539 False 929.000000 929 97.778000 3719 4257 1 chr6A.!!$F1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 389 0.031178 GCTGAAAATATGCGGCCCAG 59.969 55.0 0.00 0.0 0.00 4.45 F
389 390 0.031178 CTGAAAATATGCGGCCCAGC 59.969 55.0 0.00 0.0 37.71 4.85 F
1203 1245 0.032678 AGAAGGTGTGCTCACTCGTG 59.967 55.0 17.68 0.0 43.41 4.35 F
2704 2749 0.109179 CCGCACACAATTCATGGTGG 60.109 55.0 5.07 0.0 39.31 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1491 0.326264 ACTCTTTGCAGGCTTCGGAT 59.674 50.000 0.00 0.0 0.00 4.18 R
1668 1710 1.134175 TGCGAGATATCGTTGAGTGCA 59.866 47.619 11.90 0.0 35.26 4.57 R
2914 3203 0.044549 ACCCTACCGTAATTGGGGGA 59.955 55.000 6.79 0.0 43.72 4.81 R
4259 4799 0.247460 CTGCCCGTCAATGACAGAGA 59.753 55.000 14.24 0.0 32.09 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.591750 ATCTAATCAAGACAGGTATACGGG 57.408 41.667 0.00 0.00 36.93 5.28
25 26 5.698104 TCTAATCAAGACAGGTATACGGGA 58.302 41.667 0.00 0.00 0.00 5.14
26 27 6.312529 TCTAATCAAGACAGGTATACGGGAT 58.687 40.000 0.00 0.00 0.00 3.85
27 28 5.470047 AATCAAGACAGGTATACGGGATC 57.530 43.478 0.00 0.00 0.00 3.36
28 29 2.882761 TCAAGACAGGTATACGGGATCG 59.117 50.000 0.00 0.00 43.02 3.69
29 30 2.882761 CAAGACAGGTATACGGGATCGA 59.117 50.000 0.00 0.00 40.11 3.59
30 31 3.436577 AGACAGGTATACGGGATCGAT 57.563 47.619 0.00 0.00 40.11 3.59
31 32 3.345414 AGACAGGTATACGGGATCGATC 58.655 50.000 17.36 17.36 40.11 3.69
32 33 2.422832 GACAGGTATACGGGATCGATCC 59.577 54.545 32.57 32.57 46.41 3.36
33 34 2.041350 ACAGGTATACGGGATCGATCCT 59.959 50.000 36.72 24.16 46.35 3.24
41 42 1.583054 GGGATCGATCCTGAAAACCG 58.417 55.000 36.72 0.00 46.35 4.44
42 43 1.138266 GGGATCGATCCTGAAAACCGA 59.862 52.381 36.72 0.00 46.35 4.69
43 44 2.202566 GGATCGATCCTGAAAACCGAC 58.797 52.381 32.91 5.73 43.73 4.79
44 45 1.852895 GATCGATCCTGAAAACCGACG 59.147 52.381 14.76 0.00 31.85 5.12
45 46 0.108992 TCGATCCTGAAAACCGACGG 60.109 55.000 13.61 13.61 0.00 4.79
46 47 0.389426 CGATCCTGAAAACCGACGGT 60.389 55.000 15.37 15.37 37.65 4.83
48 49 2.671914 CGATCCTGAAAACCGACGGTTA 60.672 50.000 31.27 15.89 46.20 2.85
49 50 3.528532 GATCCTGAAAACCGACGGTTAT 58.471 45.455 31.27 19.85 46.20 1.89
50 51 3.405823 TCCTGAAAACCGACGGTTATT 57.594 42.857 31.27 24.64 46.20 1.40
51 52 4.533919 TCCTGAAAACCGACGGTTATTA 57.466 40.909 31.27 18.52 46.20 0.98
52 53 5.088680 TCCTGAAAACCGACGGTTATTAT 57.911 39.130 31.27 17.95 46.20 1.28
53 54 6.219417 TCCTGAAAACCGACGGTTATTATA 57.781 37.500 31.27 15.29 46.20 0.98
54 55 6.042143 TCCTGAAAACCGACGGTTATTATAC 58.958 40.000 31.27 18.04 46.20 1.47
55 56 5.234972 CCTGAAAACCGACGGTTATTATACC 59.765 44.000 31.27 15.28 46.20 2.73
74 75 3.471354 GGATGACCCGGTTTGTAGG 57.529 57.895 0.00 0.00 0.00 3.18
75 76 0.906775 GGATGACCCGGTTTGTAGGA 59.093 55.000 0.00 0.00 0.00 2.94
76 77 1.489230 GGATGACCCGGTTTGTAGGAT 59.511 52.381 0.00 0.00 0.00 3.24
77 78 2.484947 GGATGACCCGGTTTGTAGGATC 60.485 54.545 0.00 0.00 0.00 3.36
78 79 1.946984 TGACCCGGTTTGTAGGATCT 58.053 50.000 0.00 0.00 0.00 2.75
79 80 1.553248 TGACCCGGTTTGTAGGATCTG 59.447 52.381 0.00 0.00 0.00 2.90
80 81 0.252197 ACCCGGTTTGTAGGATCTGC 59.748 55.000 0.00 0.00 0.00 4.26
81 82 0.541863 CCCGGTTTGTAGGATCTGCT 59.458 55.000 0.00 0.00 0.00 4.24
82 83 1.760613 CCCGGTTTGTAGGATCTGCTA 59.239 52.381 0.00 0.00 0.00 3.49
83 84 2.224066 CCCGGTTTGTAGGATCTGCTAG 60.224 54.545 0.00 0.00 0.00 3.42
84 85 2.693591 CCGGTTTGTAGGATCTGCTAGA 59.306 50.000 0.00 0.00 0.00 2.43
85 86 3.243569 CCGGTTTGTAGGATCTGCTAGAG 60.244 52.174 0.00 0.00 0.00 2.43
86 87 3.632604 CGGTTTGTAGGATCTGCTAGAGA 59.367 47.826 0.00 0.00 34.25 3.10
87 88 4.279671 CGGTTTGTAGGATCTGCTAGAGAT 59.720 45.833 0.00 0.00 44.78 2.75
88 89 5.537188 GGTTTGTAGGATCTGCTAGAGATG 58.463 45.833 8.78 0.00 41.91 2.90
95 96 5.920193 GGATCTGCTAGAGATGCTCTTAT 57.080 43.478 12.96 0.00 44.26 1.73
96 97 5.894807 GGATCTGCTAGAGATGCTCTTATC 58.105 45.833 12.96 0.34 44.26 1.75
97 98 5.418524 GGATCTGCTAGAGATGCTCTTATCA 59.581 44.000 12.96 0.00 44.26 2.15
98 99 6.097270 GGATCTGCTAGAGATGCTCTTATCAT 59.903 42.308 12.96 0.00 44.26 2.45
99 100 6.914654 TCTGCTAGAGATGCTCTTATCATT 57.085 37.500 1.88 0.00 41.50 2.57
100 101 7.300556 TCTGCTAGAGATGCTCTTATCATTT 57.699 36.000 1.88 0.00 41.50 2.32
101 102 7.153315 TCTGCTAGAGATGCTCTTATCATTTG 58.847 38.462 1.88 0.00 41.50 2.32
102 103 6.228995 TGCTAGAGATGCTCTTATCATTTGG 58.771 40.000 1.88 0.00 41.50 3.28
103 104 5.642919 GCTAGAGATGCTCTTATCATTTGGG 59.357 44.000 1.88 0.00 41.50 4.12
104 105 5.901413 AGAGATGCTCTTATCATTTGGGA 57.099 39.130 0.00 0.00 37.60 4.37
105 106 6.451292 AGAGATGCTCTTATCATTTGGGAT 57.549 37.500 0.00 0.00 37.60 3.85
106 107 6.239396 AGAGATGCTCTTATCATTTGGGATG 58.761 40.000 0.00 0.00 37.60 3.51
107 108 4.765856 AGATGCTCTTATCATTTGGGATGC 59.234 41.667 0.00 0.00 0.00 3.91
108 109 3.225104 TGCTCTTATCATTTGGGATGCC 58.775 45.455 0.00 0.00 0.00 4.40
109 110 2.560105 GCTCTTATCATTTGGGATGCCC 59.440 50.000 0.00 0.00 45.71 5.36
110 111 3.753193 GCTCTTATCATTTGGGATGCCCT 60.753 47.826 0.00 0.00 45.70 5.19
111 112 3.825014 CTCTTATCATTTGGGATGCCCTG 59.175 47.826 0.00 0.00 45.70 4.45
112 113 3.462954 TCTTATCATTTGGGATGCCCTGA 59.537 43.478 0.00 1.56 45.70 3.86
113 114 4.106825 TCTTATCATTTGGGATGCCCTGAT 59.893 41.667 14.55 14.55 45.70 2.90
114 115 5.312974 TCTTATCATTTGGGATGCCCTGATA 59.687 40.000 13.04 13.04 45.70 2.15
115 116 4.687262 ATCATTTGGGATGCCCTGATAT 57.313 40.909 0.00 0.00 45.70 1.63
116 117 5.801720 ATCATTTGGGATGCCCTGATATA 57.198 39.130 0.00 0.00 45.70 0.86
117 118 5.183530 TCATTTGGGATGCCCTGATATAG 57.816 43.478 0.00 0.00 45.70 1.31
118 119 4.018141 TCATTTGGGATGCCCTGATATAGG 60.018 45.833 0.00 0.00 45.70 2.57
119 120 2.741159 TGGGATGCCCTGATATAGGT 57.259 50.000 0.00 0.00 45.70 3.08
120 121 2.269023 TGGGATGCCCTGATATAGGTG 58.731 52.381 0.00 0.00 45.70 4.00
121 122 1.561542 GGGATGCCCTGATATAGGTGG 59.438 57.143 0.00 0.00 45.80 4.61
122 123 2.551270 GGATGCCCTGATATAGGTGGA 58.449 52.381 0.00 0.00 45.80 4.02
123 124 2.237392 GGATGCCCTGATATAGGTGGAC 59.763 54.545 0.00 0.00 45.80 4.02
124 125 2.487746 TGCCCTGATATAGGTGGACA 57.512 50.000 0.00 0.00 45.80 4.02
125 126 2.770447 TGCCCTGATATAGGTGGACAA 58.230 47.619 0.00 0.00 45.80 3.18
126 127 3.119319 TGCCCTGATATAGGTGGACAAA 58.881 45.455 0.00 0.00 45.80 2.83
127 128 3.118038 TGCCCTGATATAGGTGGACAAAC 60.118 47.826 0.00 0.00 45.80 2.93
128 129 3.728845 CCCTGATATAGGTGGACAAACG 58.271 50.000 0.00 0.00 45.80 3.60
129 130 3.494398 CCCTGATATAGGTGGACAAACGG 60.494 52.174 0.00 0.00 45.80 4.44
130 131 3.494398 CCTGATATAGGTGGACAAACGGG 60.494 52.174 0.00 0.00 42.00 5.28
131 132 2.158871 TGATATAGGTGGACAAACGGGC 60.159 50.000 0.00 0.00 0.00 6.13
132 133 0.542805 TATAGGTGGACAAACGGGCC 59.457 55.000 0.00 0.00 0.00 5.80
133 134 1.493854 ATAGGTGGACAAACGGGCCA 61.494 55.000 4.39 0.00 0.00 5.36
134 135 2.119484 TAGGTGGACAAACGGGCCAG 62.119 60.000 4.39 1.85 31.18 4.85
135 136 2.983592 GTGGACAAACGGGCCAGG 60.984 66.667 8.08 0.00 31.18 4.45
136 137 3.172106 TGGACAAACGGGCCAGGA 61.172 61.111 8.08 0.00 0.00 3.86
137 138 2.355115 GGACAAACGGGCCAGGAT 59.645 61.111 8.08 0.00 0.00 3.24
138 139 1.202099 TGGACAAACGGGCCAGGATA 61.202 55.000 8.08 0.00 0.00 2.59
139 140 0.034863 GGACAAACGGGCCAGGATAA 60.035 55.000 8.08 0.00 0.00 1.75
140 141 1.614850 GGACAAACGGGCCAGGATAAA 60.615 52.381 8.08 0.00 0.00 1.40
141 142 2.164338 GACAAACGGGCCAGGATAAAA 58.836 47.619 8.08 0.00 0.00 1.52
142 143 1.890489 ACAAACGGGCCAGGATAAAAC 59.110 47.619 8.08 0.00 0.00 2.43
143 144 1.135517 CAAACGGGCCAGGATAAAACG 60.136 52.381 8.08 0.00 0.00 3.60
144 145 0.325602 AACGGGCCAGGATAAAACGA 59.674 50.000 8.08 0.00 0.00 3.85
145 146 0.107848 ACGGGCCAGGATAAAACGAG 60.108 55.000 8.08 0.00 0.00 4.18
146 147 1.436983 CGGGCCAGGATAAAACGAGC 61.437 60.000 4.39 0.00 0.00 5.03
147 148 0.393808 GGGCCAGGATAAAACGAGCA 60.394 55.000 4.39 0.00 0.00 4.26
148 149 1.459450 GGCCAGGATAAAACGAGCAA 58.541 50.000 0.00 0.00 0.00 3.91
149 150 1.401905 GGCCAGGATAAAACGAGCAAG 59.598 52.381 0.00 0.00 0.00 4.01
150 151 1.202188 GCCAGGATAAAACGAGCAAGC 60.202 52.381 0.00 0.00 0.00 4.01
151 152 1.401905 CCAGGATAAAACGAGCAAGCC 59.598 52.381 0.00 0.00 0.00 4.35
152 153 1.401905 CAGGATAAAACGAGCAAGCCC 59.598 52.381 0.00 0.00 0.00 5.19
153 154 0.377203 GGATAAAACGAGCAAGCCCG 59.623 55.000 0.00 0.00 0.00 6.13
154 155 0.248094 GATAAAACGAGCAAGCCCGC 60.248 55.000 0.00 0.00 0.00 6.13
155 156 1.977594 ATAAAACGAGCAAGCCCGCG 61.978 55.000 0.00 0.00 36.85 6.46
156 157 4.980805 AAACGAGCAAGCCCGCGA 62.981 61.111 8.23 0.00 36.85 5.87
159 160 4.492160 CGAGCAAGCCCGCGAGTA 62.492 66.667 8.23 0.00 36.85 2.59
160 161 2.886124 GAGCAAGCCCGCGAGTAC 60.886 66.667 8.23 0.00 36.85 2.73
161 162 4.796231 AGCAAGCCCGCGAGTACG 62.796 66.667 8.23 0.00 42.93 3.67
192 193 2.836360 CCATGGGCCAGGCATGAC 60.836 66.667 13.83 0.00 0.00 3.06
193 194 2.043752 CATGGGCCAGGCATGACA 60.044 61.111 15.19 6.80 0.00 3.58
194 195 2.043652 ATGGGCCAGGCATGACAC 60.044 61.111 15.19 0.00 0.00 3.67
195 196 4.720902 TGGGCCAGGCATGACACG 62.721 66.667 15.19 0.00 0.00 4.49
199 200 4.415150 CCAGGCATGACACGGGCT 62.415 66.667 0.00 0.00 41.01 5.19
200 201 2.584064 CAGGCATGACACGGGCTA 59.416 61.111 0.00 0.00 37.90 3.93
201 202 1.078497 CAGGCATGACACGGGCTAA 60.078 57.895 0.00 0.00 37.90 3.09
202 203 0.676466 CAGGCATGACACGGGCTAAA 60.676 55.000 0.00 0.00 37.90 1.85
203 204 0.676782 AGGCATGACACGGGCTAAAC 60.677 55.000 0.00 0.00 38.25 2.01
204 205 1.423845 GCATGACACGGGCTAAACG 59.576 57.895 0.00 0.00 37.36 3.60
205 206 1.977594 GCATGACACGGGCTAAACGG 61.978 60.000 0.00 0.00 35.23 4.44
206 207 1.078708 ATGACACGGGCTAAACGGG 60.079 57.895 0.00 0.00 41.32 5.28
207 208 1.546589 ATGACACGGGCTAAACGGGA 61.547 55.000 0.00 0.00 38.31 5.14
208 209 1.739196 GACACGGGCTAAACGGGAC 60.739 63.158 0.00 0.00 38.31 4.46
234 235 4.858433 CACGCGGCATGCATTGGG 62.858 66.667 21.36 18.08 46.97 4.12
239 240 2.110213 GGCATGCATTGGGCCATG 59.890 61.111 21.36 9.36 46.92 3.66
240 241 2.590575 GCATGCATTGGGCCATGC 60.591 61.111 24.85 24.85 44.02 4.06
288 289 2.356075 CACGTCACGGCCCGTTTA 60.356 61.111 5.76 0.00 38.32 2.01
289 290 1.738830 CACGTCACGGCCCGTTTAT 60.739 57.895 5.76 0.00 38.32 1.40
290 291 1.004679 ACGTCACGGCCCGTTTATT 60.005 52.632 5.76 0.00 38.32 1.40
291 292 0.603439 ACGTCACGGCCCGTTTATTT 60.603 50.000 5.76 0.00 38.32 1.40
292 293 0.518195 CGTCACGGCCCGTTTATTTT 59.482 50.000 5.76 0.00 38.32 1.82
293 294 1.069091 CGTCACGGCCCGTTTATTTTT 60.069 47.619 5.76 0.00 38.32 1.94
351 352 7.890169 ACCTAAAATATAGTCCAATAGGCCT 57.110 36.000 11.78 11.78 33.35 5.19
352 353 8.984112 ACCTAAAATATAGTCCAATAGGCCTA 57.016 34.615 16.60 16.60 33.35 3.93
353 354 9.401496 ACCTAAAATATAGTCCAATAGGCCTAA 57.599 33.333 18.42 0.00 33.35 2.69
360 361 9.965902 ATATAGTCCAATAGGCCTAAAAATCAG 57.034 33.333 18.42 1.89 33.74 2.90
361 362 4.889995 AGTCCAATAGGCCTAAAAATCAGC 59.110 41.667 18.42 2.93 33.74 4.26
362 363 4.038042 GTCCAATAGGCCTAAAAATCAGCC 59.962 45.833 18.42 0.00 46.13 4.85
366 367 2.672961 GGCCTAAAAATCAGCCCAAC 57.327 50.000 0.00 0.00 39.60 3.77
367 368 1.899142 GGCCTAAAAATCAGCCCAACA 59.101 47.619 0.00 0.00 39.60 3.33
368 369 2.501316 GGCCTAAAAATCAGCCCAACAT 59.499 45.455 0.00 0.00 39.60 2.71
369 370 3.524541 GCCTAAAAATCAGCCCAACATG 58.475 45.455 0.00 0.00 0.00 3.21
370 371 3.524541 CCTAAAAATCAGCCCAACATGC 58.475 45.455 0.00 0.00 0.00 4.06
371 372 3.196254 CCTAAAAATCAGCCCAACATGCT 59.804 43.478 0.00 0.00 40.41 3.79
380 381 4.395959 AGCCCAACATGCTGAAAATATG 57.604 40.909 0.00 0.00 37.76 1.78
381 382 2.867975 GCCCAACATGCTGAAAATATGC 59.132 45.455 0.00 0.00 0.00 3.14
382 383 3.117794 CCCAACATGCTGAAAATATGCG 58.882 45.455 0.00 0.00 0.00 4.73
383 384 3.117794 CCAACATGCTGAAAATATGCGG 58.882 45.455 0.00 0.00 0.00 5.69
384 385 2.497107 ACATGCTGAAAATATGCGGC 57.503 45.000 0.00 0.00 36.93 6.53
385 386 1.067516 ACATGCTGAAAATATGCGGCC 59.932 47.619 0.00 0.00 35.56 6.13
386 387 0.675633 ATGCTGAAAATATGCGGCCC 59.324 50.000 0.00 0.00 35.56 5.80
387 388 0.682532 TGCTGAAAATATGCGGCCCA 60.683 50.000 0.00 0.00 35.56 5.36
388 389 0.031178 GCTGAAAATATGCGGCCCAG 59.969 55.000 0.00 0.00 0.00 4.45
389 390 0.031178 CTGAAAATATGCGGCCCAGC 59.969 55.000 0.00 0.00 37.71 4.85
396 397 4.423112 TGCGGCCCAGCATGCTAA 62.423 61.111 22.19 0.00 42.92 3.09
397 398 3.140141 GCGGCCCAGCATGCTAAA 61.140 61.111 22.19 0.00 37.05 1.85
398 399 2.800736 CGGCCCAGCATGCTAAAC 59.199 61.111 22.19 12.07 31.97 2.01
399 400 2.800736 GGCCCAGCATGCTAAACG 59.199 61.111 22.19 7.93 31.97 3.60
400 401 2.774799 GGCCCAGCATGCTAAACGG 61.775 63.158 22.19 17.20 31.97 4.44
401 402 2.774799 GCCCAGCATGCTAAACGGG 61.775 63.158 28.53 28.53 36.71 5.28
402 403 2.774799 CCCAGCATGCTAAACGGGC 61.775 63.158 23.72 0.00 31.97 6.13
403 404 2.774799 CCAGCATGCTAAACGGGCC 61.775 63.158 22.19 0.00 31.97 5.80
404 405 2.045708 CAGCATGCTAAACGGGCCA 61.046 57.895 22.19 0.00 0.00 5.36
405 406 1.304052 AGCATGCTAAACGGGCCAA 60.304 52.632 21.21 0.00 0.00 4.52
406 407 1.153842 GCATGCTAAACGGGCCAAC 60.154 57.895 11.37 0.00 0.00 3.77
407 408 1.136565 CATGCTAAACGGGCCAACG 59.863 57.895 4.39 1.48 40.31 4.10
420 421 3.591835 CAACGTGCTGGCCCGTTT 61.592 61.111 13.85 0.00 44.16 3.60
421 422 2.111460 AACGTGCTGGCCCGTTTA 59.889 55.556 11.15 0.00 44.16 2.01
422 423 2.255881 AACGTGCTGGCCCGTTTAC 61.256 57.895 11.15 0.88 44.16 2.01
423 424 2.358247 CGTGCTGGCCCGTTTACT 60.358 61.111 0.00 0.00 0.00 2.24
424 425 1.079681 CGTGCTGGCCCGTTTACTA 60.080 57.895 0.00 0.00 0.00 1.82
425 426 0.671163 CGTGCTGGCCCGTTTACTAA 60.671 55.000 0.00 0.00 0.00 2.24
426 427 0.800631 GTGCTGGCCCGTTTACTAAC 59.199 55.000 0.00 0.00 0.00 2.34
427 428 0.688487 TGCTGGCCCGTTTACTAACT 59.312 50.000 0.00 0.00 31.89 2.24
428 429 1.084289 GCTGGCCCGTTTACTAACTG 58.916 55.000 0.00 0.00 31.89 3.16
429 430 1.734163 CTGGCCCGTTTACTAACTGG 58.266 55.000 0.00 0.00 40.48 4.00
430 431 0.325602 TGGCCCGTTTACTAACTGGG 59.674 55.000 0.00 11.19 44.21 4.45
432 433 3.164026 CCCGTTTACTAACTGGGCC 57.836 57.895 0.00 0.00 39.48 5.80
433 434 0.741927 CCCGTTTACTAACTGGGCCG 60.742 60.000 0.00 0.00 39.48 6.13
434 435 0.037046 CCGTTTACTAACTGGGCCGT 60.037 55.000 0.00 0.00 31.89 5.68
435 436 1.608801 CCGTTTACTAACTGGGCCGTT 60.609 52.381 15.89 15.89 31.89 4.44
436 437 1.728425 CGTTTACTAACTGGGCCGTTC 59.272 52.381 15.24 2.38 31.89 3.95
437 438 2.079158 GTTTACTAACTGGGCCGTTCC 58.921 52.381 15.24 0.00 0.00 3.62
438 439 1.648116 TTACTAACTGGGCCGTTCCT 58.352 50.000 15.24 6.47 34.39 3.36
439 440 0.899720 TACTAACTGGGCCGTTCCTG 59.100 55.000 15.24 10.44 34.39 3.86
440 441 1.078426 CTAACTGGGCCGTTCCTGG 60.078 63.158 15.24 0.00 34.39 4.45
448 449 4.101448 CCGTTCCTGGCCCTGGAG 62.101 72.222 9.53 0.00 33.24 3.86
449 450 4.101448 CGTTCCTGGCCCTGGAGG 62.101 72.222 9.53 7.53 33.24 4.30
458 459 2.187946 CCCTGGAGGCTTAGCACG 59.812 66.667 6.53 0.00 0.00 5.34
459 460 2.512515 CCTGGAGGCTTAGCACGC 60.513 66.667 6.53 0.00 0.00 5.34
460 461 2.887568 CTGGAGGCTTAGCACGCG 60.888 66.667 3.53 3.53 0.00 6.01
461 462 4.451150 TGGAGGCTTAGCACGCGG 62.451 66.667 12.47 0.00 0.00 6.46
487 488 3.447040 GGCACGGCCCGTATAGTA 58.553 61.111 9.25 0.00 44.06 1.82
488 489 1.741525 GGCACGGCCCGTATAGTAA 59.258 57.895 9.25 0.00 44.06 2.24
489 490 0.319405 GGCACGGCCCGTATAGTAAT 59.681 55.000 9.25 0.00 44.06 1.89
490 491 1.670967 GGCACGGCCCGTATAGTAATC 60.671 57.143 9.25 0.00 44.06 1.75
491 492 1.973138 CACGGCCCGTATAGTAATCG 58.027 55.000 9.25 0.00 38.32 3.34
492 493 1.267806 CACGGCCCGTATAGTAATCGT 59.732 52.381 9.25 0.00 38.32 3.73
493 494 1.267806 ACGGCCCGTATAGTAATCGTG 59.732 52.381 7.20 0.00 38.73 4.35
494 495 1.706443 GGCCCGTATAGTAATCGTGC 58.294 55.000 0.00 0.00 0.00 5.34
495 496 1.670967 GGCCCGTATAGTAATCGTGCC 60.671 57.143 7.70 7.70 40.23 5.01
496 497 1.670967 GCCCGTATAGTAATCGTGCCC 60.671 57.143 0.00 0.00 0.00 5.36
497 498 1.891150 CCCGTATAGTAATCGTGCCCT 59.109 52.381 0.00 0.00 0.00 5.19
498 499 2.352421 CCCGTATAGTAATCGTGCCCTG 60.352 54.545 0.00 0.00 0.00 4.45
499 500 2.352421 CCGTATAGTAATCGTGCCCTGG 60.352 54.545 0.00 0.00 0.00 4.45
500 501 2.685100 GTATAGTAATCGTGCCCTGGC 58.315 52.381 0.00 0.00 42.35 4.85
501 502 0.033504 ATAGTAATCGTGCCCTGGCG 59.966 55.000 3.32 0.00 45.51 5.69
502 503 2.023414 TAGTAATCGTGCCCTGGCGG 62.023 60.000 3.32 0.00 45.51 6.13
528 529 2.895372 GGGCCAGGCACGATTACG 60.895 66.667 15.19 0.00 45.75 3.18
529 530 2.185867 GGCCAGGCACGATTACGA 59.814 61.111 15.19 0.00 42.66 3.43
530 531 1.227556 GGCCAGGCACGATTACGAT 60.228 57.895 15.19 0.00 42.66 3.73
531 532 1.498865 GGCCAGGCACGATTACGATG 61.499 60.000 15.19 0.00 42.66 3.84
532 533 1.498865 GCCAGGCACGATTACGATGG 61.499 60.000 6.55 0.00 42.66 3.51
533 534 0.880278 CCAGGCACGATTACGATGGG 60.880 60.000 0.00 0.00 42.66 4.00
534 535 1.227556 AGGCACGATTACGATGGGC 60.228 57.895 0.00 0.00 42.66 5.36
535 536 2.251642 GGCACGATTACGATGGGCC 61.252 63.158 0.00 0.00 42.66 5.80
536 537 2.594962 GCACGATTACGATGGGCCG 61.595 63.158 0.00 0.00 42.66 6.13
537 538 1.066752 CACGATTACGATGGGCCGA 59.933 57.895 0.00 0.00 42.66 5.54
538 539 1.066918 ACGATTACGATGGGCCGAC 59.933 57.895 0.00 0.00 42.66 4.79
539 540 1.663702 CGATTACGATGGGCCGACC 60.664 63.158 0.00 0.00 42.66 4.79
552 553 4.636435 CGACCCGTTTGGCCAGGT 62.636 66.667 13.99 13.99 37.83 4.00
553 554 2.671963 GACCCGTTTGGCCAGGTC 60.672 66.667 22.18 22.18 41.87 3.85
554 555 3.175710 ACCCGTTTGGCCAGGTCT 61.176 61.111 5.11 0.00 37.83 3.85
555 556 2.672996 CCCGTTTGGCCAGGTCTG 60.673 66.667 5.11 0.00 0.00 3.51
556 557 2.113139 CCGTTTGGCCAGGTCTGT 59.887 61.111 5.11 0.00 0.00 3.41
557 558 2.260869 CCGTTTGGCCAGGTCTGTG 61.261 63.158 5.11 0.00 0.00 3.66
558 559 2.908073 CGTTTGGCCAGGTCTGTGC 61.908 63.158 5.11 0.91 0.00 4.57
559 560 2.203480 TTTGGCCAGGTCTGTGCC 60.203 61.111 5.11 17.65 43.01 5.01
560 561 3.808218 TTTGGCCAGGTCTGTGCCC 62.808 63.158 20.03 9.16 42.45 5.36
587 588 2.752903 GCTTAACCCCCACAAGTGTATG 59.247 50.000 0.00 0.00 0.00 2.39
664 671 3.357079 CACACCCCTGCTCGCAAC 61.357 66.667 0.00 0.00 0.00 4.17
679 707 0.609662 GCAACCCATGGCAATTGAGT 59.390 50.000 20.08 4.14 0.00 3.41
706 734 0.399949 AACTCAGTGAGGGGTGGTCA 60.400 55.000 23.79 0.00 33.35 4.02
724 753 0.604780 CACTGGCTCAAGGTGGTGAG 60.605 60.000 0.00 0.00 46.58 3.51
726 755 4.703703 GGCTCAAGGTGGTGAGTC 57.296 61.111 4.28 0.00 45.75 3.36
802 833 2.539346 ACTCACGGTCTTACGAATCG 57.461 50.000 0.00 0.00 37.61 3.34
866 897 5.309543 TCCATTTGTTCAGAGTTCCTCCTTA 59.690 40.000 0.00 0.00 0.00 2.69
917 955 1.883084 GATCGATCACACGCCCACC 60.883 63.158 20.52 0.00 0.00 4.61
957 995 1.749634 GCGCCTTGTTCTAGAGGAGTA 59.250 52.381 0.00 0.00 35.55 2.59
958 996 2.223618 GCGCCTTGTTCTAGAGGAGTAG 60.224 54.545 0.00 0.00 35.55 2.57
986 1028 2.319136 TACTTGTGTGCCGTCTGTTT 57.681 45.000 0.00 0.00 0.00 2.83
1197 1239 1.227943 GGTGCAGAAGGTGTGCTCA 60.228 57.895 0.00 0.00 41.78 4.26
1203 1245 0.032678 AGAAGGTGTGCTCACTCGTG 59.967 55.000 17.68 0.00 43.41 4.35
1269 1311 1.517538 TTGGTGGGATGCTGGGGATT 61.518 55.000 0.00 0.00 0.00 3.01
1270 1312 1.152673 GGTGGGATGCTGGGGATTC 60.153 63.158 0.00 0.00 0.00 2.52
1276 1318 1.144503 GGATGCTGGGGATTCAGATGT 59.855 52.381 0.00 0.00 36.93 3.06
1413 1455 3.521126 AGAAGGTATTCAGTCTGCCATGT 59.479 43.478 0.00 0.00 37.94 3.21
1449 1491 2.727392 CCCCGATACAACCGAGCCA 61.727 63.158 0.00 0.00 0.00 4.75
1452 1494 0.600255 CCGATACAACCGAGCCATCC 60.600 60.000 0.00 0.00 0.00 3.51
1632 1674 2.401766 GCACCTGTTGGCTCCATCG 61.402 63.158 0.00 0.00 36.63 3.84
1668 1710 3.461085 ACATCACCATAGATTTCTGGGCT 59.539 43.478 0.00 0.00 36.82 5.19
2025 2067 1.993370 GTGATCACTAGCAACGTGGAC 59.007 52.381 18.83 0.00 33.31 4.02
2085 2127 7.111247 TCTCCCATTTAAATTTGCATACAGG 57.889 36.000 0.00 0.00 0.00 4.00
2122 2164 6.758254 TCACAGAATGACAGAATAGTGTTCA 58.242 36.000 2.23 0.00 39.69 3.18
2256 2299 1.557443 CGAAAGCCACACTCACCGAC 61.557 60.000 0.00 0.00 0.00 4.79
2391 2434 2.762535 TTTCTCCAACCATCTCCGAC 57.237 50.000 0.00 0.00 0.00 4.79
2406 2449 2.100916 CTCCGACTGAAATACCCGTCAT 59.899 50.000 0.00 0.00 0.00 3.06
2420 2463 4.253685 ACCCGTCATTTGTGAGTCATTAG 58.746 43.478 0.00 0.00 0.00 1.73
2478 2523 2.589014 GAATTGCGCTCCTTCTGTTTG 58.411 47.619 9.73 0.00 0.00 2.93
2497 2542 9.062524 TCTGTTTGTGTAACTAATAGTGCAAAT 57.937 29.630 12.25 0.00 40.46 2.32
2550 2595 4.766373 TGGAAGAACATAATGCACACATGT 59.234 37.500 0.00 0.00 36.36 3.21
2603 2648 2.541556 GAAGTGGCGATGTCTACCTTC 58.458 52.381 0.00 0.00 0.00 3.46
2618 2663 1.630244 CCTTCGCGGACAAGCTTCTG 61.630 60.000 6.13 0.00 33.16 3.02
2704 2749 0.109179 CCGCACACAATTCATGGTGG 60.109 55.000 5.07 0.00 39.31 4.61
2783 3072 3.495753 GCAACATTTTTGCTTCTCAAGGG 59.504 43.478 0.29 0.00 41.87 3.95
2834 3123 1.094785 CCTGATTTTACTGGGGCACG 58.905 55.000 0.00 0.00 0.00 5.34
2898 3187 6.235664 TGTTCTTATGGTTCCCTGTTAGTTC 58.764 40.000 0.00 0.00 0.00 3.01
2906 3195 0.768622 CCCTGTTAGTTCACCACCCA 59.231 55.000 0.00 0.00 0.00 4.51
2908 3197 1.544759 CCTGTTAGTTCACCACCCACC 60.545 57.143 0.00 0.00 0.00 4.61
2911 3200 1.428718 TTAGTTCACCACCCACCCCC 61.429 60.000 0.00 0.00 0.00 5.40
2912 3201 2.349630 TAGTTCACCACCCACCCCCT 62.350 60.000 0.00 0.00 0.00 4.79
2913 3202 2.856988 TTCACCACCCACCCCCTC 60.857 66.667 0.00 0.00 0.00 4.30
2914 3203 3.436056 TTCACCACCCACCCCCTCT 62.436 63.158 0.00 0.00 0.00 3.69
2927 3216 1.705997 CCCCTCTCCCCCAATTACGG 61.706 65.000 0.00 0.00 0.00 4.02
3224 3758 6.219473 CAAGTATACCTGGATGCTCAACTAG 58.781 44.000 0.00 0.00 0.00 2.57
3283 3817 3.989698 CTGGCTGCACCGTAGTCCG 62.990 68.421 0.50 0.00 43.94 4.79
3295 3829 0.029567 GTAGTCCGGATGAGCGTCTG 59.970 60.000 7.81 0.00 0.00 3.51
3304 3838 2.285834 GGATGAGCGTCTGTATTTTGCG 60.286 50.000 0.00 0.00 0.00 4.85
3364 3898 1.407851 GCAGCCCTCATGTCATCAGAA 60.408 52.381 0.00 0.00 0.00 3.02
3451 3985 3.006967 ACTCTGATTGTTCACGGCTTAGT 59.993 43.478 0.00 0.00 0.00 2.24
3463 3998 1.267532 CGGCTTAGTTTGCTGCATACG 60.268 52.381 15.73 5.22 0.00 3.06
3503 4038 1.364171 CGCATTCTCTAGGGTCCCG 59.636 63.158 0.99 0.00 0.00 5.14
3630 4165 1.270094 TGCTAACACAACACCTCTCCG 60.270 52.381 0.00 0.00 0.00 4.63
3691 4231 5.294356 TGTGTTCACTAATGTACTGTCCAC 58.706 41.667 4.59 0.00 0.00 4.02
3863 4403 4.651045 TCTCCATGTATTCTAGCAAGAGCA 59.349 41.667 0.00 0.00 45.49 4.26
4049 4589 3.223435 CACACATAGAGGTCCGAGGTAT 58.777 50.000 0.00 0.00 0.00 2.73
4081 4621 3.373439 ACGACAGAGAGTCCGTGTAATAC 59.627 47.826 0.00 0.00 44.66 1.89
4257 4797 3.866582 CAGTCGGAGGGGGCCATC 61.867 72.222 4.39 2.03 0.00 3.51
4263 4803 2.444895 GAGGGGGCCATCGTCTCT 60.445 66.667 4.39 0.00 0.00 3.10
4264 4804 2.765807 AGGGGGCCATCGTCTCTG 60.766 66.667 4.39 0.00 0.00 3.35
4265 4805 3.083997 GGGGGCCATCGTCTCTGT 61.084 66.667 4.39 0.00 0.00 3.41
4266 4806 2.501610 GGGGCCATCGTCTCTGTC 59.498 66.667 4.39 0.00 0.00 3.51
4267 4807 2.359169 GGGGCCATCGTCTCTGTCA 61.359 63.158 4.39 0.00 0.00 3.58
4268 4808 1.690219 GGGGCCATCGTCTCTGTCAT 61.690 60.000 4.39 0.00 0.00 3.06
4269 4809 0.179000 GGGCCATCGTCTCTGTCATT 59.821 55.000 4.39 0.00 0.00 2.57
4270 4810 1.293924 GGCCATCGTCTCTGTCATTG 58.706 55.000 0.00 0.00 0.00 2.82
4271 4811 1.134699 GGCCATCGTCTCTGTCATTGA 60.135 52.381 0.00 0.00 0.00 2.57
4272 4812 1.929836 GCCATCGTCTCTGTCATTGAC 59.070 52.381 9.93 9.93 0.00 3.18
4275 4815 3.036026 CGTCTCTGTCATTGACGGG 57.964 57.895 22.34 14.35 46.45 5.28
4276 4816 1.078759 CGTCTCTGTCATTGACGGGC 61.079 60.000 22.34 13.27 46.45 6.13
4277 4817 0.037326 GTCTCTGTCATTGACGGGCA 60.037 55.000 22.34 9.03 39.23 5.36
4278 4818 0.247460 TCTCTGTCATTGACGGGCAG 59.753 55.000 22.34 14.67 39.23 4.85
4279 4819 0.742281 CTCTGTCATTGACGGGCAGG 60.742 60.000 22.34 9.22 39.23 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.433404 TCCCGTATACCTGTCTTGATTAGATC 59.567 42.308 0.00 0.00 34.79 2.75
1 2 6.312529 TCCCGTATACCTGTCTTGATTAGAT 58.687 40.000 0.00 0.00 34.79 1.98
3 4 6.591750 ATCCCGTATACCTGTCTTGATTAG 57.408 41.667 0.00 0.00 0.00 1.73
5 6 4.022242 CGATCCCGTATACCTGTCTTGATT 60.022 45.833 0.00 0.00 0.00 2.57
6 7 3.506455 CGATCCCGTATACCTGTCTTGAT 59.494 47.826 0.00 0.00 0.00 2.57
8 9 2.882761 TCGATCCCGTATACCTGTCTTG 59.117 50.000 0.00 0.00 37.05 3.02
10 11 2.945080 TCGATCCCGTATACCTGTCT 57.055 50.000 0.00 0.00 37.05 3.41
11 12 2.422832 GGATCGATCCCGTATACCTGTC 59.577 54.545 30.80 3.58 41.20 3.51
12 13 2.444421 GGATCGATCCCGTATACCTGT 58.556 52.381 30.80 0.00 41.20 4.00
24 25 1.852895 CGTCGGTTTTCAGGATCGATC 59.147 52.381 17.36 17.36 32.46 3.69
25 26 1.470979 CCGTCGGTTTTCAGGATCGAT 60.471 52.381 2.08 0.00 32.46 3.59
26 27 0.108992 CCGTCGGTTTTCAGGATCGA 60.109 55.000 2.08 0.00 0.00 3.59
27 28 0.389426 ACCGTCGGTTTTCAGGATCG 60.389 55.000 12.23 0.00 27.29 3.69
28 29 1.804601 AACCGTCGGTTTTCAGGATC 58.195 50.000 23.96 0.00 44.33 3.36
29 30 3.622166 ATAACCGTCGGTTTTCAGGAT 57.378 42.857 33.02 17.27 44.33 3.24
30 31 3.405823 AATAACCGTCGGTTTTCAGGA 57.594 42.857 33.02 15.71 44.33 3.86
31 32 5.234972 GGTATAATAACCGTCGGTTTTCAGG 59.765 44.000 33.02 0.00 44.33 3.86
32 33 6.277918 GGTATAATAACCGTCGGTTTTCAG 57.722 41.667 33.02 0.00 44.33 3.02
56 57 0.906775 TCCTACAAACCGGGTCATCC 59.093 55.000 6.32 0.00 0.00 3.51
57 58 2.434702 AGATCCTACAAACCGGGTCATC 59.565 50.000 6.32 0.00 32.72 2.92
58 59 2.170607 CAGATCCTACAAACCGGGTCAT 59.829 50.000 6.32 0.00 32.72 3.06
59 60 1.553248 CAGATCCTACAAACCGGGTCA 59.447 52.381 6.32 0.00 32.72 4.02
60 61 1.742750 GCAGATCCTACAAACCGGGTC 60.743 57.143 6.32 0.00 0.00 4.46
61 62 0.252197 GCAGATCCTACAAACCGGGT 59.748 55.000 6.32 0.00 0.00 5.28
62 63 0.541863 AGCAGATCCTACAAACCGGG 59.458 55.000 6.32 0.00 0.00 5.73
63 64 2.693591 TCTAGCAGATCCTACAAACCGG 59.306 50.000 0.00 0.00 0.00 5.28
64 65 3.632604 TCTCTAGCAGATCCTACAAACCG 59.367 47.826 0.00 0.00 0.00 4.44
65 66 5.537188 CATCTCTAGCAGATCCTACAAACC 58.463 45.833 0.00 0.00 40.20 3.27
66 67 4.987912 GCATCTCTAGCAGATCCTACAAAC 59.012 45.833 0.00 0.00 40.20 2.93
67 68 4.898265 AGCATCTCTAGCAGATCCTACAAA 59.102 41.667 0.00 0.00 40.20 2.83
68 69 4.478203 AGCATCTCTAGCAGATCCTACAA 58.522 43.478 0.00 0.00 40.20 2.41
69 70 4.078537 GAGCATCTCTAGCAGATCCTACA 58.921 47.826 0.00 0.00 40.20 2.74
70 71 4.701956 GAGCATCTCTAGCAGATCCTAC 57.298 50.000 0.00 0.00 40.20 3.18
85 86 4.082354 GGCATCCCAAATGATAAGAGCATC 60.082 45.833 0.00 0.00 0.00 3.91
86 87 3.830755 GGCATCCCAAATGATAAGAGCAT 59.169 43.478 0.00 0.00 0.00 3.79
87 88 3.225104 GGCATCCCAAATGATAAGAGCA 58.775 45.455 0.00 0.00 0.00 4.26
88 89 2.560105 GGGCATCCCAAATGATAAGAGC 59.440 50.000 0.00 0.00 44.65 4.09
109 110 3.728845 CCCGTTTGTCCACCTATATCAG 58.271 50.000 0.00 0.00 0.00 2.90
110 111 2.158871 GCCCGTTTGTCCACCTATATCA 60.159 50.000 0.00 0.00 0.00 2.15
111 112 2.490991 GCCCGTTTGTCCACCTATATC 58.509 52.381 0.00 0.00 0.00 1.63
112 113 1.142262 GGCCCGTTTGTCCACCTATAT 59.858 52.381 0.00 0.00 0.00 0.86
113 114 0.542805 GGCCCGTTTGTCCACCTATA 59.457 55.000 0.00 0.00 0.00 1.31
114 115 1.301954 GGCCCGTTTGTCCACCTAT 59.698 57.895 0.00 0.00 0.00 2.57
115 116 2.119484 CTGGCCCGTTTGTCCACCTA 62.119 60.000 0.00 0.00 0.00 3.08
116 117 3.491598 CTGGCCCGTTTGTCCACCT 62.492 63.158 0.00 0.00 0.00 4.00
117 118 2.983592 CTGGCCCGTTTGTCCACC 60.984 66.667 0.00 0.00 0.00 4.61
118 119 2.764637 ATCCTGGCCCGTTTGTCCAC 62.765 60.000 0.00 0.00 0.00 4.02
119 120 1.202099 TATCCTGGCCCGTTTGTCCA 61.202 55.000 0.00 0.00 0.00 4.02
120 121 0.034863 TTATCCTGGCCCGTTTGTCC 60.035 55.000 0.00 0.00 0.00 4.02
121 122 1.828979 TTTATCCTGGCCCGTTTGTC 58.171 50.000 0.00 0.00 0.00 3.18
122 123 1.890489 GTTTTATCCTGGCCCGTTTGT 59.110 47.619 0.00 0.00 0.00 2.83
123 124 1.135517 CGTTTTATCCTGGCCCGTTTG 60.136 52.381 0.00 0.00 0.00 2.93
124 125 1.170442 CGTTTTATCCTGGCCCGTTT 58.830 50.000 0.00 0.00 0.00 3.60
125 126 0.325602 TCGTTTTATCCTGGCCCGTT 59.674 50.000 0.00 0.00 0.00 4.44
126 127 0.107848 CTCGTTTTATCCTGGCCCGT 60.108 55.000 0.00 0.00 0.00 5.28
127 128 1.436983 GCTCGTTTTATCCTGGCCCG 61.437 60.000 0.00 0.00 0.00 6.13
128 129 0.393808 TGCTCGTTTTATCCTGGCCC 60.394 55.000 0.00 0.00 0.00 5.80
129 130 1.401905 CTTGCTCGTTTTATCCTGGCC 59.598 52.381 0.00 0.00 0.00 5.36
130 131 1.202188 GCTTGCTCGTTTTATCCTGGC 60.202 52.381 0.00 0.00 0.00 4.85
131 132 1.401905 GGCTTGCTCGTTTTATCCTGG 59.598 52.381 0.00 0.00 0.00 4.45
132 133 1.401905 GGGCTTGCTCGTTTTATCCTG 59.598 52.381 0.00 0.00 0.00 3.86
133 134 1.751437 GGGCTTGCTCGTTTTATCCT 58.249 50.000 0.00 0.00 0.00 3.24
134 135 0.377203 CGGGCTTGCTCGTTTTATCC 59.623 55.000 6.73 0.00 0.00 2.59
135 136 0.248094 GCGGGCTTGCTCGTTTTATC 60.248 55.000 16.39 0.00 0.00 1.75
136 137 1.800681 GCGGGCTTGCTCGTTTTAT 59.199 52.632 16.39 0.00 0.00 1.40
137 138 2.673114 CGCGGGCTTGCTCGTTTTA 61.673 57.895 16.39 0.00 0.00 1.52
138 139 4.025401 CGCGGGCTTGCTCGTTTT 62.025 61.111 16.39 0.00 0.00 2.43
139 140 4.980805 TCGCGGGCTTGCTCGTTT 62.981 61.111 16.39 0.00 0.00 3.60
142 143 4.492160 TACTCGCGGGCTTGCTCG 62.492 66.667 5.51 10.83 0.00 5.03
143 144 2.886124 GTACTCGCGGGCTTGCTC 60.886 66.667 5.51 0.00 0.00 4.26
144 145 4.796231 CGTACTCGCGGGCTTGCT 62.796 66.667 5.51 0.00 0.00 3.91
175 176 2.836360 GTCATGCCTGGCCCATGG 60.836 66.667 17.53 4.14 40.29 3.66
176 177 2.043752 TGTCATGCCTGGCCCATG 60.044 61.111 17.53 14.15 41.03 3.66
177 178 2.043652 GTGTCATGCCTGGCCCAT 60.044 61.111 17.53 0.06 0.00 4.00
178 179 4.720902 CGTGTCATGCCTGGCCCA 62.721 66.667 17.53 4.78 0.00 5.36
182 183 2.535485 TTAGCCCGTGTCATGCCTGG 62.535 60.000 0.00 0.00 0.00 4.45
183 184 0.676466 TTTAGCCCGTGTCATGCCTG 60.676 55.000 0.00 0.00 0.00 4.85
184 185 0.676782 GTTTAGCCCGTGTCATGCCT 60.677 55.000 0.00 0.00 0.00 4.75
185 186 1.800681 GTTTAGCCCGTGTCATGCC 59.199 57.895 0.00 0.00 0.00 4.40
186 187 1.423845 CGTTTAGCCCGTGTCATGC 59.576 57.895 0.00 0.00 0.00 4.06
187 188 1.366111 CCCGTTTAGCCCGTGTCATG 61.366 60.000 0.00 0.00 0.00 3.07
188 189 1.078708 CCCGTTTAGCCCGTGTCAT 60.079 57.895 0.00 0.00 0.00 3.06
189 190 2.208619 TCCCGTTTAGCCCGTGTCA 61.209 57.895 0.00 0.00 0.00 3.58
190 191 1.739196 GTCCCGTTTAGCCCGTGTC 60.739 63.158 0.00 0.00 0.00 3.67
191 192 2.344872 GTCCCGTTTAGCCCGTGT 59.655 61.111 0.00 0.00 0.00 4.49
192 193 2.812178 CGTCCCGTTTAGCCCGTG 60.812 66.667 0.00 0.00 0.00 4.94
193 194 3.305516 ACGTCCCGTTTAGCCCGT 61.306 61.111 0.00 0.00 36.35 5.28
194 195 2.812178 CACGTCCCGTTTAGCCCG 60.812 66.667 0.00 0.00 38.32 6.13
195 196 3.122971 GCACGTCCCGTTTAGCCC 61.123 66.667 0.00 0.00 38.32 5.19
196 197 3.122971 GGCACGTCCCGTTTAGCC 61.123 66.667 1.63 1.63 38.32 3.93
217 218 4.858433 CCCAATGCATGCCGCGTG 62.858 66.667 16.68 8.31 46.97 5.34
222 223 2.110213 CATGGCCCAATGCATGCC 59.890 61.111 16.68 17.46 45.56 4.40
271 272 1.293267 AATAAACGGGCCGTGACGTG 61.293 55.000 34.87 0.50 43.31 4.49
272 273 0.603439 AAATAAACGGGCCGTGACGT 60.603 50.000 34.87 20.07 46.48 4.34
273 274 0.518195 AAAATAAACGGGCCGTGACG 59.482 50.000 34.87 5.24 39.99 4.35
274 275 2.710220 AAAAATAAACGGGCCGTGAC 57.290 45.000 34.87 0.00 39.99 3.67
339 340 4.038042 GGCTGATTTTTAGGCCTATTGGAC 59.962 45.833 14.74 6.58 43.41 4.02
340 341 4.215109 GGCTGATTTTTAGGCCTATTGGA 58.785 43.478 14.74 0.00 41.20 3.53
341 342 4.590850 GGCTGATTTTTAGGCCTATTGG 57.409 45.455 14.74 1.56 41.20 3.16
348 349 3.524541 CATGTTGGGCTGATTTTTAGGC 58.475 45.455 0.00 0.00 39.76 3.93
349 350 3.196254 AGCATGTTGGGCTGATTTTTAGG 59.804 43.478 0.00 0.00 40.80 2.69
350 351 4.460948 AGCATGTTGGGCTGATTTTTAG 57.539 40.909 0.00 0.00 40.80 1.85
359 360 3.431207 GCATATTTTCAGCATGTTGGGCT 60.431 43.478 9.87 0.00 43.77 5.19
360 361 2.867975 GCATATTTTCAGCATGTTGGGC 59.132 45.455 9.87 0.00 37.40 5.36
361 362 3.117794 CGCATATTTTCAGCATGTTGGG 58.882 45.455 9.87 0.00 37.40 4.12
362 363 3.117794 CCGCATATTTTCAGCATGTTGG 58.882 45.455 9.87 0.00 37.40 3.77
363 364 2.536803 GCCGCATATTTTCAGCATGTTG 59.463 45.455 2.65 2.65 37.40 3.33
364 365 2.481795 GGCCGCATATTTTCAGCATGTT 60.482 45.455 0.00 0.00 37.40 2.71
365 366 1.067516 GGCCGCATATTTTCAGCATGT 59.932 47.619 0.00 0.00 37.40 3.21
366 367 1.603678 GGGCCGCATATTTTCAGCATG 60.604 52.381 0.00 0.00 37.54 4.06
367 368 0.675633 GGGCCGCATATTTTCAGCAT 59.324 50.000 0.00 0.00 0.00 3.79
368 369 0.682532 TGGGCCGCATATTTTCAGCA 60.683 50.000 0.00 0.00 0.00 4.41
369 370 0.031178 CTGGGCCGCATATTTTCAGC 59.969 55.000 0.00 0.00 0.00 4.26
370 371 0.031178 GCTGGGCCGCATATTTTCAG 59.969 55.000 14.09 0.00 0.00 3.02
371 372 0.682532 TGCTGGGCCGCATATTTTCA 60.683 50.000 17.02 0.00 34.44 2.69
372 373 2.114638 TGCTGGGCCGCATATTTTC 58.885 52.632 17.02 0.00 34.44 2.29
373 374 4.353325 TGCTGGGCCGCATATTTT 57.647 50.000 17.02 0.00 34.44 1.82
379 380 3.934909 TTTAGCATGCTGGGCCGCA 62.935 57.895 30.42 21.73 45.10 5.69
380 381 3.140141 TTTAGCATGCTGGGCCGC 61.140 61.111 30.42 12.46 0.00 6.53
381 382 2.800736 GTTTAGCATGCTGGGCCG 59.199 61.111 30.42 0.00 0.00 6.13
382 383 2.774799 CCGTTTAGCATGCTGGGCC 61.775 63.158 30.42 13.55 0.00 5.80
383 384 2.774799 CCCGTTTAGCATGCTGGGC 61.775 63.158 30.42 17.15 0.00 5.36
384 385 2.774799 GCCCGTTTAGCATGCTGGG 61.775 63.158 28.53 28.53 39.72 4.45
385 386 2.774799 GGCCCGTTTAGCATGCTGG 61.775 63.158 30.42 22.07 0.00 4.85
386 387 1.594194 TTGGCCCGTTTAGCATGCTG 61.594 55.000 30.42 13.11 0.00 4.41
387 388 1.304052 TTGGCCCGTTTAGCATGCT 60.304 52.632 25.99 25.99 0.00 3.79
388 389 1.153842 GTTGGCCCGTTTAGCATGC 60.154 57.895 10.51 10.51 0.00 4.06
389 390 1.136565 CGTTGGCCCGTTTAGCATG 59.863 57.895 0.00 0.00 0.00 4.06
390 391 1.302993 ACGTTGGCCCGTTTAGCAT 60.303 52.632 0.00 0.00 37.96 3.79
391 392 2.111460 ACGTTGGCCCGTTTAGCA 59.889 55.556 0.00 0.00 37.96 3.49
392 393 2.559330 CACGTTGGCCCGTTTAGC 59.441 61.111 4.13 0.00 39.45 3.09
393 394 1.964373 AGCACGTTGGCCCGTTTAG 60.964 57.895 4.13 0.00 39.45 1.85
394 395 2.111460 AGCACGTTGGCCCGTTTA 59.889 55.556 4.13 0.00 39.45 2.01
395 396 3.591835 CAGCACGTTGGCCCGTTT 61.592 61.111 4.13 0.00 39.45 3.60
407 408 0.800631 GTTAGTAAACGGGCCAGCAC 59.199 55.000 4.39 0.00 0.00 4.40
408 409 0.688487 AGTTAGTAAACGGGCCAGCA 59.312 50.000 4.39 0.00 40.73 4.41
409 410 1.084289 CAGTTAGTAAACGGGCCAGC 58.916 55.000 4.39 0.00 40.73 4.85
410 411 1.677820 CCCAGTTAGTAAACGGGCCAG 60.678 57.143 4.39 1.85 46.22 4.85
411 412 0.325602 CCCAGTTAGTAAACGGGCCA 59.674 55.000 4.39 0.00 46.22 5.36
412 413 3.164026 CCCAGTTAGTAAACGGGCC 57.836 57.895 0.00 0.00 46.22 5.80
414 415 0.741927 CGGCCCAGTTAGTAAACGGG 60.742 60.000 11.93 11.93 46.88 5.28
415 416 0.037046 ACGGCCCAGTTAGTAAACGG 60.037 55.000 0.00 0.00 40.73 4.44
416 417 1.728425 GAACGGCCCAGTTAGTAAACG 59.272 52.381 0.00 0.00 40.73 3.60
417 418 2.079158 GGAACGGCCCAGTTAGTAAAC 58.921 52.381 0.00 0.00 34.00 2.01
418 419 1.980036 AGGAACGGCCCAGTTAGTAAA 59.020 47.619 0.00 0.00 37.37 2.01
419 420 1.276989 CAGGAACGGCCCAGTTAGTAA 59.723 52.381 0.00 0.00 37.37 2.24
420 421 0.899720 CAGGAACGGCCCAGTTAGTA 59.100 55.000 0.00 0.00 37.37 1.82
421 422 1.677552 CAGGAACGGCCCAGTTAGT 59.322 57.895 0.00 0.00 37.37 2.24
422 423 1.078426 CCAGGAACGGCCCAGTTAG 60.078 63.158 0.00 0.00 37.37 2.34
423 424 3.074281 CCAGGAACGGCCCAGTTA 58.926 61.111 0.00 0.00 37.37 2.24
431 432 4.101448 CTCCAGGGCCAGGAACGG 62.101 72.222 19.20 3.66 34.08 4.44
432 433 4.101448 CCTCCAGGGCCAGGAACG 62.101 72.222 19.20 8.14 34.08 3.95
441 442 2.187946 CGTGCTAAGCCTCCAGGG 59.812 66.667 0.00 0.00 35.18 4.45
442 443 2.512515 GCGTGCTAAGCCTCCAGG 60.513 66.667 0.00 0.00 38.53 4.45
443 444 2.887568 CGCGTGCTAAGCCTCCAG 60.888 66.667 0.00 0.00 0.00 3.86
444 445 4.451150 CCGCGTGCTAAGCCTCCA 62.451 66.667 4.92 0.00 0.00 3.86
471 472 1.706443 GATTACTATACGGGCCGTGC 58.294 55.000 39.80 15.03 41.39 5.34
472 473 1.267806 ACGATTACTATACGGGCCGTG 59.732 52.381 39.80 26.05 41.39 4.94
473 474 1.267806 CACGATTACTATACGGGCCGT 59.732 52.381 35.91 35.91 44.35 5.68
474 475 1.973138 CACGATTACTATACGGGCCG 58.027 55.000 27.06 27.06 0.00 6.13
477 478 1.891150 AGGGCACGATTACTATACGGG 59.109 52.381 0.00 0.00 0.00 5.28
478 479 2.352421 CCAGGGCACGATTACTATACGG 60.352 54.545 0.00 0.00 0.00 4.02
479 480 2.925306 GCCAGGGCACGATTACTATACG 60.925 54.545 5.20 0.00 41.49 3.06
480 481 2.685100 GCCAGGGCACGATTACTATAC 58.315 52.381 5.20 0.00 41.49 1.47
481 482 1.271379 CGCCAGGGCACGATTACTATA 59.729 52.381 11.42 0.00 42.06 1.31
482 483 0.033504 CGCCAGGGCACGATTACTAT 59.966 55.000 11.42 0.00 42.06 2.12
483 484 1.440060 CGCCAGGGCACGATTACTA 59.560 57.895 11.42 0.00 42.06 1.82
484 485 2.186903 CGCCAGGGCACGATTACT 59.813 61.111 11.42 0.00 42.06 2.24
485 486 2.895372 CCGCCAGGGCACGATTAC 60.895 66.667 11.42 0.00 42.06 1.89
509 510 4.169696 TAATCGTGCCTGGCCCGG 62.170 66.667 22.84 9.24 0.00 5.73
510 511 2.895372 GTAATCGTGCCTGGCCCG 60.895 66.667 17.67 17.67 0.00 6.13
511 512 2.660258 ATCGTAATCGTGCCTGGCCC 62.660 60.000 17.53 2.94 38.33 5.80
512 513 1.227556 ATCGTAATCGTGCCTGGCC 60.228 57.895 17.53 6.66 38.33 5.36
513 514 1.498865 CCATCGTAATCGTGCCTGGC 61.499 60.000 12.87 12.87 38.33 4.85
514 515 0.880278 CCCATCGTAATCGTGCCTGG 60.880 60.000 0.00 0.00 38.33 4.45
515 516 1.498865 GCCCATCGTAATCGTGCCTG 61.499 60.000 0.00 0.00 38.33 4.85
516 517 1.227556 GCCCATCGTAATCGTGCCT 60.228 57.895 0.00 0.00 38.33 4.75
517 518 2.251642 GGCCCATCGTAATCGTGCC 61.252 63.158 0.00 0.00 38.33 5.01
518 519 2.594962 CGGCCCATCGTAATCGTGC 61.595 63.158 0.00 0.00 38.33 5.34
519 520 1.066752 TCGGCCCATCGTAATCGTG 59.933 57.895 0.00 0.00 38.33 4.35
520 521 1.066918 GTCGGCCCATCGTAATCGT 59.933 57.895 0.00 0.00 38.33 3.73
521 522 1.663702 GGTCGGCCCATCGTAATCG 60.664 63.158 0.00 0.00 38.55 3.34
522 523 4.355925 GGTCGGCCCATCGTAATC 57.644 61.111 0.00 0.00 0.00 1.75
538 539 2.672996 CAGACCTGGCCAAACGGG 60.673 66.667 7.01 7.12 42.81 5.28
539 540 2.113139 ACAGACCTGGCCAAACGG 59.887 61.111 7.01 7.56 34.19 4.44
540 541 2.908073 GCACAGACCTGGCCAAACG 61.908 63.158 7.01 0.00 34.19 3.60
541 542 2.564721 GGCACAGACCTGGCCAAAC 61.565 63.158 7.01 0.54 42.57 2.93
542 543 2.203480 GGCACAGACCTGGCCAAA 60.203 61.111 7.01 0.00 42.57 3.28
549 550 2.608988 CCCTCAGGGCACAGACCT 60.609 66.667 0.00 0.00 45.50 3.85
587 588 6.317893 AGAACCACCGTAATAATTGTTGGATC 59.682 38.462 0.00 0.00 0.00 3.36
664 671 1.405105 CCGTAACTCAATTGCCATGGG 59.595 52.381 15.13 0.00 0.00 4.00
679 707 2.168496 CCCTCACTGAGTTCTCCGTAA 58.832 52.381 5.32 0.00 0.00 3.18
691 719 3.891817 AGTGACCACCCCTCACTG 58.108 61.111 0.27 0.00 45.43 3.66
706 734 1.056700 ACTCACCACCTTGAGCCAGT 61.057 55.000 0.00 0.00 46.09 4.00
708 736 1.754745 GACTCACCACCTTGAGCCA 59.245 57.895 0.00 0.00 46.09 4.75
802 833 2.418334 CCCGGCAGTAAGAACCTACTTC 60.418 54.545 0.00 0.00 29.36 3.01
866 897 8.597662 TTCAAGTTTAAACTAGCTGATAACGT 57.402 30.769 20.83 0.00 38.57 3.99
957 995 3.727726 GGCACACAAGTAAATTTTGCCT 58.272 40.909 16.89 0.86 43.88 4.75
958 996 2.474735 CGGCACACAAGTAAATTTTGCC 59.525 45.455 14.97 14.97 43.82 4.52
986 1028 3.081061 GCCACCATGTGATGAACTAACA 58.919 45.455 0.00 0.00 35.23 2.41
1197 1239 2.335316 TGTTAAACTTGCCCACGAGT 57.665 45.000 0.00 0.00 42.74 4.18
1203 1245 5.696270 CCTCTTGAATTTGTTAAACTTGCCC 59.304 40.000 0.00 0.00 0.00 5.36
1269 1311 5.534207 AATTCAACTTTGCCAACATCTGA 57.466 34.783 0.00 0.00 0.00 3.27
1270 1312 5.754406 TCAAATTCAACTTTGCCAACATCTG 59.246 36.000 0.00 0.00 36.32 2.90
1276 1318 7.621428 TGAATTTCAAATTCAACTTTGCCAA 57.379 28.000 21.02 0.00 36.32 4.52
1413 1455 3.612517 GCATATCGATCTGGTGCCA 57.387 52.632 12.19 0.00 0.00 4.92
1449 1491 0.326264 ACTCTTTGCAGGCTTCGGAT 59.674 50.000 0.00 0.00 0.00 4.18
1452 1494 1.229428 TGAACTCTTTGCAGGCTTCG 58.771 50.000 0.00 0.00 0.00 3.79
1632 1674 5.011090 TGGTGATGTAGTCATGCTTAGTC 57.989 43.478 0.00 0.00 39.48 2.59
1668 1710 1.134175 TGCGAGATATCGTTGAGTGCA 59.866 47.619 11.90 0.00 35.26 4.57
1690 1732 9.869757 ATAAGCACACCAATTAAATTCCTTAAC 57.130 29.630 0.00 0.00 32.26 2.01
1695 1737 8.466798 AGTACATAAGCACACCAATTAAATTCC 58.533 33.333 0.00 0.00 0.00 3.01
1854 1896 8.264347 TCAAATATTATGGTCTGAGCTGTACAA 58.736 33.333 8.47 0.00 0.00 2.41
1858 1900 7.776969 ACATTCAAATATTATGGTCTGAGCTGT 59.223 33.333 8.47 0.00 0.00 4.40
2025 2067 2.029918 TCCAGCGAATGATGTATCTCCG 60.030 50.000 0.00 0.00 0.00 4.63
2256 2299 2.741228 GCAGGTCAGAAGCTACATCTGG 60.741 54.545 12.80 0.17 43.58 3.86
2391 2434 4.695455 ACTCACAAATGACGGGTATTTCAG 59.305 41.667 0.00 0.00 0.00 3.02
2550 2595 9.567776 TCGCCTAATTTCAGATATATTTTCCAA 57.432 29.630 0.00 0.00 0.00 3.53
2603 2648 3.121030 CCCAGAAGCTTGTCCGCG 61.121 66.667 2.10 0.00 34.40 6.46
2618 2663 3.702045 AGCGGTTCTCAGATATATAGCCC 59.298 47.826 0.00 0.00 0.00 5.19
2737 2782 5.748670 TGTTAGTTATGCAAGAGTGGGTA 57.251 39.130 0.00 0.00 0.00 3.69
2742 2787 5.530915 TGTTGCTTGTTAGTTATGCAAGAGT 59.469 36.000 7.58 0.00 43.00 3.24
2783 3072 0.882927 TAGGTGTGCCAAGCGTGTTC 60.883 55.000 0.00 0.00 37.19 3.18
2898 3187 3.330720 GAGAGGGGGTGGGTGGTG 61.331 72.222 0.00 0.00 0.00 4.17
2906 3195 0.626574 GTAATTGGGGGAGAGGGGGT 60.627 60.000 0.00 0.00 0.00 4.95
2908 3197 1.705997 CCGTAATTGGGGGAGAGGGG 61.706 65.000 0.00 0.00 0.00 4.79
2911 3200 1.692519 CCTACCGTAATTGGGGGAGAG 59.307 57.143 9.76 1.21 36.25 3.20
2912 3201 1.693404 CCCTACCGTAATTGGGGGAGA 60.693 57.143 9.76 0.00 36.25 3.71
2913 3202 0.763035 CCCTACCGTAATTGGGGGAG 59.237 60.000 2.55 2.55 33.51 4.30
2914 3203 0.044549 ACCCTACCGTAATTGGGGGA 59.955 55.000 6.79 0.00 43.72 4.81
2919 3208 6.110707 ACAAATCAGTACCCTACCGTAATTG 58.889 40.000 0.00 0.00 0.00 2.32
2927 3216 6.426025 ACGAGAAAAACAAATCAGTACCCTAC 59.574 38.462 0.00 0.00 0.00 3.18
3224 3758 4.715523 TGCGGGGTAGGCTGTTGC 62.716 66.667 0.00 0.00 38.76 4.17
3283 3817 2.285834 CGCAAAATACAGACGCTCATCC 60.286 50.000 0.00 0.00 0.00 3.51
3322 3856 2.559231 TGATCCAGTGTTACGTACAGCA 59.441 45.455 0.00 0.00 37.45 4.41
3329 3863 1.002366 GCTGCTGATCCAGTGTTACG 58.998 55.000 0.00 0.00 35.28 3.18
3364 3898 2.288579 TGCTACGAAGACAACGGACATT 60.289 45.455 0.00 0.00 34.93 2.71
3451 3985 2.418628 GCTTAAGACCGTATGCAGCAAA 59.581 45.455 6.67 0.00 0.00 3.68
3463 3998 2.093783 CACCAAACGATCGCTTAAGACC 59.906 50.000 16.60 0.00 0.00 3.85
3503 4038 5.757850 ACAGCATTATCGGGAATTTCTTC 57.242 39.130 0.00 0.00 0.00 2.87
3630 4165 1.336240 GCTGACCATGTCCAAACTTGC 60.336 52.381 0.00 0.00 31.01 4.01
4049 4589 6.372659 ACGGACTCTCTGTCGTAAGTAAAATA 59.627 38.462 0.00 0.00 46.24 1.40
4252 4792 1.929836 GTCAATGACAGAGACGATGGC 59.070 52.381 8.74 0.00 32.09 4.40
4259 4799 0.247460 CTGCCCGTCAATGACAGAGA 59.753 55.000 14.24 0.00 32.09 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.