Multiple sequence alignment - TraesCS3D01G236900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G236900 chr3D 100.000 3491 0 0 1 3491 327722628 327726118 0.000000e+00 6447.0
1 TraesCS3D01G236900 chr3D 96.257 374 14 0 1 374 495305677 495305304 6.400000e-172 614.0
2 TraesCS3D01G236900 chr3D 96.000 375 12 3 2 374 612019700 612020073 1.070000e-169 606.0
3 TraesCS3D01G236900 chr3B 96.468 2237 62 11 442 2673 422007292 422005068 0.000000e+00 3677.0
4 TraesCS3D01G236900 chr3B 80.795 302 24 14 2843 3126 422005070 422004785 4.570000e-49 206.0
5 TraesCS3D01G236900 chr3B 100.000 28 0 0 2819 2846 825472476 825472449 6.000000e-03 52.8
6 TraesCS3D01G236900 chr3A 96.248 2052 49 8 705 2740 441843943 441845982 0.000000e+00 3338.0
7 TraesCS3D01G236900 chr3A 88.318 779 38 15 2742 3491 441848702 441849456 0.000000e+00 885.0
8 TraesCS3D01G236900 chr3A 89.137 313 24 4 386 689 441843646 441843957 7.070000e-102 381.0
9 TraesCS3D01G236900 chr3A 100.000 29 0 0 2671 2699 693182188 693182216 2.000000e-03 54.7
10 TraesCS3D01G236900 chr2D 95.312 384 17 1 1 383 629577195 629577578 2.980000e-170 608.0
11 TraesCS3D01G236900 chr2D 95.979 373 15 0 1 373 539164692 539164320 1.070000e-169 606.0
12 TraesCS3D01G236900 chr2D 95.026 382 16 3 2 382 321081369 321080990 6.450000e-167 597.0
13 TraesCS3D01G236900 chr5D 95.989 374 12 2 1 374 556930985 556931355 3.850000e-169 604.0
14 TraesCS3D01G236900 chr4D 95.515 379 15 2 1 377 40799321 40798943 3.850000e-169 604.0
15 TraesCS3D01G236900 chr4D 94.845 388 17 3 2 388 364026523 364026908 1.390000e-168 603.0
16 TraesCS3D01G236900 chr6D 94.832 387 19 1 1 386 55902461 55902847 1.390000e-168 603.0
17 TraesCS3D01G236900 chr5B 86.325 117 9 4 2706 2820 13518924 13519035 1.700000e-23 121.0
18 TraesCS3D01G236900 chr1A 83.607 122 15 3 2708 2827 23026484 23026602 3.680000e-20 110.0
19 TraesCS3D01G236900 chr1A 92.500 40 1 2 2662 2699 240478833 240478794 4.870000e-04 56.5
20 TraesCS3D01G236900 chr6A 83.333 120 15 3 2710 2827 67124432 67124316 4.770000e-19 106.0
21 TraesCS3D01G236900 chr6A 84.158 101 13 2 2708 2808 24325875 24325778 1.030000e-15 95.3
22 TraesCS3D01G236900 chr2A 82.645 121 16 3 2708 2826 424011217 424011100 6.160000e-18 102.0
23 TraesCS3D01G236900 chr2A 76.596 188 35 7 3076 3256 31602016 31601831 1.030000e-15 95.3
24 TraesCS3D01G236900 chr2A 94.737 38 2 0 3077 3114 724357216 724357253 3.760000e-05 60.2
25 TraesCS3D01G236900 chr7A 81.967 122 14 6 2708 2826 56307383 56307267 2.870000e-16 97.1
26 TraesCS3D01G236900 chr7A 84.536 97 15 0 2708 2804 725157353 725157449 2.870000e-16 97.1
27 TraesCS3D01G236900 chr7A 81.148 122 18 3 2708 2827 176990806 176990688 3.710000e-15 93.5
28 TraesCS3D01G236900 chr7A 100.000 30 0 0 2819 2848 200064251 200064222 4.870000e-04 56.5
29 TraesCS3D01G236900 chr5A 81.982 111 15 3 2719 2827 468192659 468192552 4.800000e-14 89.8
30 TraesCS3D01G236900 chr5A 80.328 122 19 3 2708 2827 445237919 445237801 1.730000e-13 87.9
31 TraesCS3D01G236900 chr5A 80.909 110 14 6 2975 3081 3620852 3620747 2.890000e-11 80.5
32 TraesCS3D01G236900 chr5A 100.000 29 0 0 2819 2847 517942179 517942151 2.000000e-03 54.7
33 TraesCS3D01G236900 chr2B 95.000 40 2 0 3075 3114 714266215 714266254 2.910000e-06 63.9
34 TraesCS3D01G236900 chr2B 95.000 40 2 0 3075 3114 714321300 714321339 2.910000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G236900 chr3D 327722628 327726118 3490 False 6447.000000 6447 100.000000 1 3491 1 chr3D.!!$F1 3490
1 TraesCS3D01G236900 chr3B 422004785 422007292 2507 True 1941.500000 3677 88.631500 442 3126 2 chr3B.!!$R2 2684
2 TraesCS3D01G236900 chr3A 441843646 441849456 5810 False 1534.666667 3338 91.234333 386 3491 3 chr3A.!!$F2 3105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.106335 CCCTGCAAAAACACATGGCA 59.894 50.0 0.00 0.0 0.00 4.92 F
132 133 0.108774 TGATAAACGCCCACACACCA 59.891 50.0 0.00 0.0 0.00 4.17 F
251 252 0.112218 AATGCCCACACACCAGCTTA 59.888 50.0 0.00 0.0 0.00 3.09 F
263 264 0.179108 CCAGCTTAGTCCTACGTGGC 60.179 60.0 0.00 0.0 35.26 5.01 F
266 267 0.245539 GCTTAGTCCTACGTGGCACA 59.754 55.0 19.09 0.0 35.26 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 1654 0.178970 GGGCGAGGTCCTGGTAGATA 60.179 60.000 0.0 0.0 0.0 1.98 R
1897 1910 1.458588 GGAGCCCGATCTCTTCCCT 60.459 63.158 0.0 0.0 33.7 4.20 R
2022 2035 1.669440 GGCAACGAGGAGGTACACA 59.331 57.895 0.0 0.0 0.0 3.72 R
2313 2326 1.612395 CCACAGCCTCCAGACTCTCC 61.612 65.000 0.0 0.0 0.0 3.71 R
2635 2656 3.531538 TGAATAAGGTGTCGCTCATTCC 58.468 45.455 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.977914 GAGAGTTGCCATCTGCTTACA 58.022 47.619 0.00 0.00 42.00 2.41
21 22 3.338249 GAGAGTTGCCATCTGCTTACAA 58.662 45.455 0.00 0.00 42.00 2.41
22 23 3.341823 AGAGTTGCCATCTGCTTACAAG 58.658 45.455 0.00 0.00 42.00 3.16
35 36 2.436417 CTTACAAGCAAAGCTAGGGCA 58.564 47.619 6.90 0.00 38.25 5.36
36 37 2.113860 TACAAGCAAAGCTAGGGCAG 57.886 50.000 6.90 2.19 38.25 4.85
37 38 0.111253 ACAAGCAAAGCTAGGGCAGT 59.889 50.000 6.90 2.72 38.25 4.40
38 39 1.251251 CAAGCAAAGCTAGGGCAGTT 58.749 50.000 6.90 0.00 38.25 3.16
39 40 1.068055 CAAGCAAAGCTAGGGCAGTTG 60.068 52.381 6.90 0.00 38.25 3.16
40 41 1.213799 GCAAAGCTAGGGCAGTTGC 59.786 57.895 11.47 11.47 46.39 4.17
50 51 4.743018 GCAGTTGCCATGTACCCT 57.257 55.556 0.00 0.00 34.31 4.34
51 52 2.183409 GCAGTTGCCATGTACCCTG 58.817 57.895 0.00 0.00 34.31 4.45
52 53 1.937546 GCAGTTGCCATGTACCCTGC 61.938 60.000 8.35 8.35 38.58 4.85
53 54 0.608856 CAGTTGCCATGTACCCTGCA 60.609 55.000 0.00 0.00 0.00 4.41
54 55 0.112218 AGTTGCCATGTACCCTGCAA 59.888 50.000 8.43 8.43 41.08 4.08
55 56 0.965439 GTTGCCATGTACCCTGCAAA 59.035 50.000 12.71 0.00 44.44 3.68
56 57 1.342819 GTTGCCATGTACCCTGCAAAA 59.657 47.619 12.71 0.00 44.44 2.44
57 58 1.709578 TGCCATGTACCCTGCAAAAA 58.290 45.000 0.00 0.00 0.00 1.94
58 59 1.342819 TGCCATGTACCCTGCAAAAAC 59.657 47.619 0.00 0.00 0.00 2.43
59 60 1.342819 GCCATGTACCCTGCAAAAACA 59.657 47.619 0.00 0.00 0.00 2.83
60 61 2.866065 GCCATGTACCCTGCAAAAACAC 60.866 50.000 0.00 0.00 0.00 3.32
61 62 2.363680 CCATGTACCCTGCAAAAACACA 59.636 45.455 0.00 0.00 0.00 3.72
62 63 3.006752 CCATGTACCCTGCAAAAACACAT 59.993 43.478 0.00 0.00 0.00 3.21
63 64 3.724508 TGTACCCTGCAAAAACACATG 57.275 42.857 0.00 0.00 0.00 3.21
64 65 2.363680 TGTACCCTGCAAAAACACATGG 59.636 45.455 0.00 0.00 0.00 3.66
65 66 0.106521 ACCCTGCAAAAACACATGGC 59.893 50.000 0.00 0.00 0.00 4.40
66 67 0.106335 CCCTGCAAAAACACATGGCA 59.894 50.000 0.00 0.00 0.00 4.92
67 68 1.474677 CCCTGCAAAAACACATGGCAA 60.475 47.619 0.00 0.00 33.58 4.52
68 69 1.598601 CCTGCAAAAACACATGGCAAC 59.401 47.619 0.00 0.00 33.58 4.17
69 70 2.553086 CTGCAAAAACACATGGCAACT 58.447 42.857 0.00 0.00 33.58 3.16
70 71 2.277969 TGCAAAAACACATGGCAACTG 58.722 42.857 0.00 0.00 37.61 3.16
71 72 1.003652 GCAAAAACACATGGCAACTGC 60.004 47.619 0.00 0.00 41.14 4.40
81 82 2.341176 GCAACTGCCAGCTTTGGG 59.659 61.111 0.00 0.00 34.31 4.12
82 83 2.501602 GCAACTGCCAGCTTTGGGT 61.502 57.895 0.00 0.00 34.31 4.51
83 84 1.364901 CAACTGCCAGCTTTGGGTG 59.635 57.895 0.00 0.00 40.29 4.61
84 85 1.076044 AACTGCCAGCTTTGGGTGT 60.076 52.632 0.00 0.00 39.09 4.16
85 86 1.394266 AACTGCCAGCTTTGGGTGTG 61.394 55.000 0.00 0.00 39.09 3.82
86 87 2.521465 TGCCAGCTTTGGGTGTGG 60.521 61.111 0.00 0.00 39.09 4.17
87 88 3.305516 GCCAGCTTTGGGTGTGGG 61.306 66.667 0.00 0.00 39.09 4.61
88 89 3.305516 CCAGCTTTGGGTGTGGGC 61.306 66.667 0.00 0.00 39.09 5.36
89 90 3.673484 CAGCTTTGGGTGTGGGCG 61.673 66.667 0.00 0.00 36.34 6.13
90 91 3.884774 AGCTTTGGGTGTGGGCGA 61.885 61.111 0.00 0.00 0.00 5.54
91 92 3.365265 GCTTTGGGTGTGGGCGAG 61.365 66.667 0.00 0.00 0.00 5.03
92 93 2.672996 CTTTGGGTGTGGGCGAGG 60.673 66.667 0.00 0.00 0.00 4.63
93 94 3.172106 TTTGGGTGTGGGCGAGGA 61.172 61.111 0.00 0.00 0.00 3.71
94 95 3.190738 TTTGGGTGTGGGCGAGGAG 62.191 63.158 0.00 0.00 0.00 3.69
95 96 4.631740 TGGGTGTGGGCGAGGAGA 62.632 66.667 0.00 0.00 0.00 3.71
96 97 4.083862 GGGTGTGGGCGAGGAGAC 62.084 72.222 0.00 0.00 0.00 3.36
97 98 4.436998 GGTGTGGGCGAGGAGACG 62.437 72.222 0.00 0.00 0.00 4.18
98 99 4.436998 GTGTGGGCGAGGAGACGG 62.437 72.222 0.00 0.00 0.00 4.79
105 106 4.778415 CGAGGAGACGGGCGTGTG 62.778 72.222 0.00 0.00 0.00 3.82
106 107 4.436998 GAGGAGACGGGCGTGTGG 62.437 72.222 0.00 0.00 0.00 4.17
113 114 3.679738 CGGGCGTGTGGGCAAAAT 61.680 61.111 0.00 0.00 44.56 1.82
114 115 2.048316 GGGCGTGTGGGCAAAATG 60.048 61.111 0.00 0.00 44.56 2.32
115 116 2.569354 GGGCGTGTGGGCAAAATGA 61.569 57.895 0.00 0.00 44.56 2.57
116 117 1.591183 GGCGTGTGGGCAAAATGAT 59.409 52.632 0.00 0.00 41.77 2.45
117 118 0.814457 GGCGTGTGGGCAAAATGATA 59.186 50.000 0.00 0.00 41.77 2.15
118 119 1.203523 GGCGTGTGGGCAAAATGATAA 59.796 47.619 0.00 0.00 41.77 1.75
119 120 2.353208 GGCGTGTGGGCAAAATGATAAA 60.353 45.455 0.00 0.00 41.77 1.40
120 121 2.666022 GCGTGTGGGCAAAATGATAAAC 59.334 45.455 0.00 0.00 0.00 2.01
121 122 2.914214 CGTGTGGGCAAAATGATAAACG 59.086 45.455 0.00 0.00 0.00 3.60
122 123 2.666022 GTGTGGGCAAAATGATAAACGC 59.334 45.455 0.00 0.00 0.00 4.84
123 124 2.267426 GTGGGCAAAATGATAAACGCC 58.733 47.619 0.00 0.00 38.85 5.68
125 126 2.663826 GGCAAAATGATAAACGCCCA 57.336 45.000 0.00 0.00 33.31 5.36
126 127 2.267426 GGCAAAATGATAAACGCCCAC 58.733 47.619 0.00 0.00 33.31 4.61
127 128 2.353208 GGCAAAATGATAAACGCCCACA 60.353 45.455 0.00 0.00 33.31 4.17
128 129 2.666022 GCAAAATGATAAACGCCCACAC 59.334 45.455 0.00 0.00 0.00 3.82
129 130 3.858877 GCAAAATGATAAACGCCCACACA 60.859 43.478 0.00 0.00 0.00 3.72
130 131 3.569250 AAATGATAAACGCCCACACAC 57.431 42.857 0.00 0.00 0.00 3.82
131 132 1.459450 ATGATAAACGCCCACACACC 58.541 50.000 0.00 0.00 0.00 4.16
132 133 0.108774 TGATAAACGCCCACACACCA 59.891 50.000 0.00 0.00 0.00 4.17
133 134 0.802494 GATAAACGCCCACACACCAG 59.198 55.000 0.00 0.00 0.00 4.00
134 135 1.241315 ATAAACGCCCACACACCAGC 61.241 55.000 0.00 0.00 0.00 4.85
140 141 4.351054 CCACACACCAGCCCCCTC 62.351 72.222 0.00 0.00 0.00 4.30
141 142 3.252284 CACACACCAGCCCCCTCT 61.252 66.667 0.00 0.00 0.00 3.69
142 143 3.252284 ACACACCAGCCCCCTCTG 61.252 66.667 0.00 0.00 0.00 3.35
143 144 4.729918 CACACCAGCCCCCTCTGC 62.730 72.222 0.00 0.00 32.87 4.26
152 153 4.680237 CCCCTCTGCGTGCGTGAA 62.680 66.667 0.00 0.00 0.00 3.18
153 154 2.664851 CCCTCTGCGTGCGTGAAA 60.665 61.111 0.00 0.00 0.00 2.69
154 155 2.551270 CCTCTGCGTGCGTGAAAC 59.449 61.111 0.00 0.00 0.00 2.78
155 156 1.956170 CCTCTGCGTGCGTGAAACT 60.956 57.895 0.00 0.00 31.75 2.66
156 157 1.202568 CTCTGCGTGCGTGAAACTG 59.797 57.895 0.00 0.00 31.75 3.16
157 158 2.162921 CTCTGCGTGCGTGAAACTGG 62.163 60.000 0.00 0.00 31.75 4.00
158 159 2.512745 TGCGTGCGTGAAACTGGT 60.513 55.556 0.00 0.00 31.75 4.00
159 160 2.052237 GCGTGCGTGAAACTGGTG 60.052 61.111 0.00 0.00 31.75 4.17
160 161 2.819552 GCGTGCGTGAAACTGGTGT 61.820 57.895 0.00 0.00 31.75 4.16
161 162 1.011242 CGTGCGTGAAACTGGTGTG 60.011 57.895 0.00 0.00 31.75 3.82
162 163 1.701545 CGTGCGTGAAACTGGTGTGT 61.702 55.000 0.00 0.00 31.75 3.72
163 164 0.248054 GTGCGTGAAACTGGTGTGTG 60.248 55.000 0.00 0.00 31.75 3.82
164 165 1.355210 GCGTGAAACTGGTGTGTGG 59.645 57.895 0.00 0.00 31.75 4.17
165 166 2.021722 CGTGAAACTGGTGTGTGGG 58.978 57.895 0.00 0.00 31.75 4.61
166 167 1.733526 GTGAAACTGGTGTGTGGGC 59.266 57.895 0.00 0.00 0.00 5.36
167 168 1.821759 TGAAACTGGTGTGTGGGCG 60.822 57.895 0.00 0.00 0.00 6.13
168 169 1.525077 GAAACTGGTGTGTGGGCGA 60.525 57.895 0.00 0.00 0.00 5.54
169 170 1.077357 AAACTGGTGTGTGGGCGAA 60.077 52.632 0.00 0.00 0.00 4.70
170 171 0.467290 AAACTGGTGTGTGGGCGAAT 60.467 50.000 0.00 0.00 0.00 3.34
171 172 0.467290 AACTGGTGTGTGGGCGAATT 60.467 50.000 0.00 0.00 0.00 2.17
172 173 1.172180 ACTGGTGTGTGGGCGAATTG 61.172 55.000 0.00 0.00 0.00 2.32
173 174 2.258286 GGTGTGTGGGCGAATTGC 59.742 61.111 0.00 0.00 45.38 3.56
174 175 2.268076 GGTGTGTGGGCGAATTGCT 61.268 57.895 0.00 0.00 45.43 3.91
175 176 0.958382 GGTGTGTGGGCGAATTGCTA 60.958 55.000 0.00 0.00 45.43 3.49
176 177 0.878416 GTGTGTGGGCGAATTGCTAA 59.122 50.000 0.00 0.00 45.43 3.09
177 178 1.268352 GTGTGTGGGCGAATTGCTAAA 59.732 47.619 0.00 0.00 45.43 1.85
178 179 1.268352 TGTGTGGGCGAATTGCTAAAC 59.732 47.619 0.00 0.00 45.43 2.01
179 180 0.519519 TGTGGGCGAATTGCTAAACG 59.480 50.000 0.00 0.00 45.43 3.60
182 183 4.377471 GCGAATTGCTAAACGCCC 57.623 55.556 10.02 0.00 44.27 6.13
183 184 1.504446 GCGAATTGCTAAACGCCCA 59.496 52.632 10.02 0.00 44.27 5.36
184 185 0.796870 GCGAATTGCTAAACGCCCAC 60.797 55.000 10.02 0.00 44.27 4.61
185 186 0.519519 CGAATTGCTAAACGCCCACA 59.480 50.000 0.00 0.00 38.05 4.17
186 187 1.727857 CGAATTGCTAAACGCCCACAC 60.728 52.381 0.00 0.00 38.05 3.82
187 188 1.268352 GAATTGCTAAACGCCCACACA 59.732 47.619 0.00 0.00 38.05 3.72
188 189 0.596082 ATTGCTAAACGCCCACACAC 59.404 50.000 0.00 0.00 38.05 3.82
189 190 1.448922 TTGCTAAACGCCCACACACC 61.449 55.000 0.00 0.00 38.05 4.16
190 191 1.894756 GCTAAACGCCCACACACCA 60.895 57.895 0.00 0.00 0.00 4.17
191 192 1.852067 GCTAAACGCCCACACACCAG 61.852 60.000 0.00 0.00 0.00 4.00
192 193 1.852067 CTAAACGCCCACACACCAGC 61.852 60.000 0.00 0.00 0.00 4.85
212 213 2.500392 CCCCCGTATGGTGAAAAAGA 57.500 50.000 0.00 0.00 0.00 2.52
213 214 2.797786 CCCCCGTATGGTGAAAAAGAA 58.202 47.619 0.00 0.00 0.00 2.52
214 215 2.490509 CCCCCGTATGGTGAAAAAGAAC 59.509 50.000 0.00 0.00 0.00 3.01
215 216 2.160813 CCCCGTATGGTGAAAAAGAACG 59.839 50.000 0.00 0.00 0.00 3.95
216 217 2.809696 CCCGTATGGTGAAAAAGAACGT 59.190 45.455 0.00 0.00 0.00 3.99
217 218 3.364565 CCCGTATGGTGAAAAAGAACGTG 60.365 47.826 0.00 0.00 0.00 4.49
218 219 3.249080 CCGTATGGTGAAAAAGAACGTGT 59.751 43.478 0.00 0.00 0.00 4.49
219 220 4.208355 CGTATGGTGAAAAAGAACGTGTG 58.792 43.478 0.00 0.00 0.00 3.82
220 221 3.708563 ATGGTGAAAAAGAACGTGTGG 57.291 42.857 0.00 0.00 0.00 4.17
221 222 1.746220 TGGTGAAAAAGAACGTGTGGG 59.254 47.619 0.00 0.00 0.00 4.61
222 223 1.535226 GGTGAAAAAGAACGTGTGGGC 60.535 52.381 0.00 0.00 0.00 5.36
223 224 0.378962 TGAAAAAGAACGTGTGGGCG 59.621 50.000 0.00 0.00 37.94 6.13
224 225 0.658897 GAAAAAGAACGTGTGGGCGA 59.341 50.000 0.00 0.00 35.59 5.54
225 226 0.379316 AAAAAGAACGTGTGGGCGAC 59.621 50.000 0.00 0.00 35.59 5.19
237 238 3.425422 GGCGACCAGATGAATGCC 58.575 61.111 0.00 0.00 35.04 4.40
238 239 2.189499 GGCGACCAGATGAATGCCC 61.189 63.158 0.00 0.00 36.51 5.36
239 240 1.451927 GCGACCAGATGAATGCCCA 60.452 57.895 0.00 0.00 0.00 5.36
240 241 1.718757 GCGACCAGATGAATGCCCAC 61.719 60.000 0.00 0.00 0.00 4.61
241 242 0.392863 CGACCAGATGAATGCCCACA 60.393 55.000 0.00 0.00 0.00 4.17
242 243 1.098050 GACCAGATGAATGCCCACAC 58.902 55.000 0.00 0.00 0.00 3.82
243 244 0.405198 ACCAGATGAATGCCCACACA 59.595 50.000 0.00 0.00 0.00 3.72
244 245 0.813184 CCAGATGAATGCCCACACAC 59.187 55.000 0.00 0.00 0.00 3.82
245 246 0.813184 CAGATGAATGCCCACACACC 59.187 55.000 0.00 0.00 0.00 4.16
246 247 0.405198 AGATGAATGCCCACACACCA 59.595 50.000 0.00 0.00 0.00 4.17
247 248 0.813184 GATGAATGCCCACACACCAG 59.187 55.000 0.00 0.00 0.00 4.00
248 249 1.252904 ATGAATGCCCACACACCAGC 61.253 55.000 0.00 0.00 0.00 4.85
249 250 1.604593 GAATGCCCACACACCAGCT 60.605 57.895 0.00 0.00 0.00 4.24
250 251 1.152483 AATGCCCACACACCAGCTT 60.152 52.632 0.00 0.00 0.00 3.74
251 252 0.112218 AATGCCCACACACCAGCTTA 59.888 50.000 0.00 0.00 0.00 3.09
252 253 0.322816 ATGCCCACACACCAGCTTAG 60.323 55.000 0.00 0.00 0.00 2.18
253 254 1.073199 GCCCACACACCAGCTTAGT 59.927 57.895 0.00 0.00 0.00 2.24
254 255 0.955919 GCCCACACACCAGCTTAGTC 60.956 60.000 0.00 0.00 0.00 2.59
255 256 0.321653 CCCACACACCAGCTTAGTCC 60.322 60.000 0.00 0.00 0.00 3.85
256 257 0.687354 CCACACACCAGCTTAGTCCT 59.313 55.000 0.00 0.00 0.00 3.85
257 258 1.899814 CCACACACCAGCTTAGTCCTA 59.100 52.381 0.00 0.00 0.00 2.94
258 259 2.353803 CCACACACCAGCTTAGTCCTAC 60.354 54.545 0.00 0.00 0.00 3.18
259 260 1.544691 ACACACCAGCTTAGTCCTACG 59.455 52.381 0.00 0.00 0.00 3.51
260 261 1.544691 CACACCAGCTTAGTCCTACGT 59.455 52.381 0.00 0.00 0.00 3.57
261 262 1.544691 ACACCAGCTTAGTCCTACGTG 59.455 52.381 0.00 0.00 0.00 4.49
262 263 1.135083 CACCAGCTTAGTCCTACGTGG 60.135 57.143 0.00 0.00 37.10 4.94
263 264 0.179108 CCAGCTTAGTCCTACGTGGC 60.179 60.000 0.00 0.00 35.26 5.01
264 265 0.530744 CAGCTTAGTCCTACGTGGCA 59.469 55.000 0.00 0.00 35.26 4.92
265 266 0.531200 AGCTTAGTCCTACGTGGCAC 59.469 55.000 7.79 7.79 35.26 5.01
266 267 0.245539 GCTTAGTCCTACGTGGCACA 59.754 55.000 19.09 0.00 35.26 4.57
280 281 2.649190 TGGCACACAAAAACTGCTAGA 58.351 42.857 0.00 0.00 0.00 2.43
281 282 3.020274 TGGCACACAAAAACTGCTAGAA 58.980 40.909 0.00 0.00 0.00 2.10
282 283 3.181491 TGGCACACAAAAACTGCTAGAAC 60.181 43.478 0.00 0.00 0.00 3.01
283 284 3.035942 GCACACAAAAACTGCTAGAACG 58.964 45.455 0.00 0.00 0.00 3.95
284 285 3.035942 CACACAAAAACTGCTAGAACGC 58.964 45.455 0.00 0.00 0.00 4.84
285 286 2.680841 ACACAAAAACTGCTAGAACGCA 59.319 40.909 0.00 0.00 38.40 5.24
286 287 3.035942 CACAAAAACTGCTAGAACGCAC 58.964 45.455 0.00 0.00 35.74 5.34
287 288 2.032924 ACAAAAACTGCTAGAACGCACC 59.967 45.455 0.00 0.00 35.74 5.01
288 289 1.961793 AAAACTGCTAGAACGCACCA 58.038 45.000 0.00 0.00 35.74 4.17
289 290 1.961793 AAACTGCTAGAACGCACCAA 58.038 45.000 0.00 0.00 35.74 3.67
290 291 1.512926 AACTGCTAGAACGCACCAAG 58.487 50.000 0.00 0.00 35.74 3.61
291 292 0.679505 ACTGCTAGAACGCACCAAGA 59.320 50.000 0.00 0.00 35.74 3.02
292 293 1.276421 ACTGCTAGAACGCACCAAGAT 59.724 47.619 0.00 0.00 35.74 2.40
293 294 2.289694 ACTGCTAGAACGCACCAAGATT 60.290 45.455 0.00 0.00 35.74 2.40
294 295 2.346803 TGCTAGAACGCACCAAGATTC 58.653 47.619 0.00 0.00 34.44 2.52
295 296 1.324736 GCTAGAACGCACCAAGATTCG 59.675 52.381 0.00 0.00 0.00 3.34
296 297 2.607187 CTAGAACGCACCAAGATTCGT 58.393 47.619 0.00 0.00 36.67 3.85
297 298 1.148310 AGAACGCACCAAGATTCGTG 58.852 50.000 0.00 0.00 35.19 4.35
311 312 1.974265 TTCGTGCAGAATTGGTTGGA 58.026 45.000 0.00 0.00 33.14 3.53
312 313 1.234821 TCGTGCAGAATTGGTTGGAC 58.765 50.000 0.00 0.00 33.00 4.02
313 314 3.773117 GTGCAGAATTGGTTGGACG 57.227 52.632 0.00 0.00 0.00 4.79
314 315 1.234821 GTGCAGAATTGGTTGGACGA 58.765 50.000 0.00 0.00 0.00 4.20
315 316 1.606668 GTGCAGAATTGGTTGGACGAA 59.393 47.619 0.00 0.00 0.00 3.85
316 317 1.879380 TGCAGAATTGGTTGGACGAAG 59.121 47.619 0.00 0.00 0.00 3.79
317 318 2.151202 GCAGAATTGGTTGGACGAAGA 58.849 47.619 0.00 0.00 0.00 2.87
318 319 2.749621 GCAGAATTGGTTGGACGAAGAT 59.250 45.455 0.00 0.00 0.00 2.40
319 320 3.181506 GCAGAATTGGTTGGACGAAGATC 60.182 47.826 0.00 0.00 0.00 2.75
320 321 3.375299 CAGAATTGGTTGGACGAAGATCC 59.625 47.826 0.00 0.00 39.45 3.36
325 326 4.833811 TGGACGAAGATCCATGCG 57.166 55.556 0.00 0.00 44.14 4.73
326 327 1.897423 TGGACGAAGATCCATGCGT 59.103 52.632 0.00 0.00 44.14 5.24
327 328 0.460109 TGGACGAAGATCCATGCGTG 60.460 55.000 0.00 0.00 44.14 5.34
328 329 0.460284 GGACGAAGATCCATGCGTGT 60.460 55.000 4.96 0.00 38.77 4.49
329 330 0.647410 GACGAAGATCCATGCGTGTG 59.353 55.000 4.96 0.00 37.07 3.82
330 331 0.740868 ACGAAGATCCATGCGTGTGG 60.741 55.000 4.96 0.40 40.76 4.17
331 332 1.431488 CGAAGATCCATGCGTGTGGG 61.431 60.000 4.96 0.00 39.80 4.61
332 333 1.718757 GAAGATCCATGCGTGTGGGC 61.719 60.000 4.96 0.00 39.80 5.36
333 334 3.576356 GATCCATGCGTGTGGGCG 61.576 66.667 4.96 0.00 39.80 6.13
334 335 4.094646 ATCCATGCGTGTGGGCGA 62.095 61.111 4.96 0.00 39.80 5.54
335 336 4.758251 TCCATGCGTGTGGGCGAG 62.758 66.667 4.96 0.00 39.80 5.03
337 338 3.049674 CATGCGTGTGGGCGAGTT 61.050 61.111 0.00 0.00 35.06 3.01
338 339 3.049674 ATGCGTGTGGGCGAGTTG 61.050 61.111 0.00 0.00 35.06 3.16
349 350 4.680237 CGAGTTGCCAGACGCCCA 62.680 66.667 0.00 0.00 36.24 5.36
350 351 3.050275 GAGTTGCCAGACGCCCAC 61.050 66.667 0.00 0.00 36.24 4.61
351 352 3.825160 GAGTTGCCAGACGCCCACA 62.825 63.158 0.00 0.00 36.24 4.17
352 353 3.660111 GTTGCCAGACGCCCACAC 61.660 66.667 0.00 0.00 36.24 3.82
368 369 3.980583 CACGTGTGGGTGTTAGACT 57.019 52.632 7.58 0.00 33.24 3.24
369 370 2.234300 CACGTGTGGGTGTTAGACTT 57.766 50.000 7.58 0.00 33.24 3.01
370 371 2.557317 CACGTGTGGGTGTTAGACTTT 58.443 47.619 7.58 0.00 33.24 2.66
371 372 2.940410 CACGTGTGGGTGTTAGACTTTT 59.060 45.455 7.58 0.00 33.24 2.27
372 373 3.001939 CACGTGTGGGTGTTAGACTTTTC 59.998 47.826 7.58 0.00 33.24 2.29
373 374 2.220133 CGTGTGGGTGTTAGACTTTTCG 59.780 50.000 0.00 0.00 0.00 3.46
374 375 3.460103 GTGTGGGTGTTAGACTTTTCGA 58.540 45.455 0.00 0.00 0.00 3.71
375 376 3.872771 GTGTGGGTGTTAGACTTTTCGAA 59.127 43.478 0.00 0.00 0.00 3.71
376 377 4.333372 GTGTGGGTGTTAGACTTTTCGAAA 59.667 41.667 6.47 6.47 0.00 3.46
377 378 4.573201 TGTGGGTGTTAGACTTTTCGAAAG 59.427 41.667 10.98 8.07 0.00 2.62
378 379 4.812626 GTGGGTGTTAGACTTTTCGAAAGA 59.187 41.667 10.98 2.02 39.20 2.52
429 430 1.626654 GCTAGCAGCAAACGAGCGAA 61.627 55.000 10.63 0.00 41.89 4.70
430 431 0.790207 CTAGCAGCAAACGAGCGAAA 59.210 50.000 0.00 0.00 40.15 3.46
487 488 1.516423 GCGGGACAGAAGGTACTCC 59.484 63.158 0.00 0.00 38.49 3.85
619 630 2.124996 CTCTCCCCACTTCCCCCA 59.875 66.667 0.00 0.00 0.00 4.96
693 704 8.585018 ACCCTAATTGAAAATGAAAATCGTTCT 58.415 29.630 0.00 0.00 0.00 3.01
728 740 7.908193 TTGAAAACGAAAATCTGAAACTAGC 57.092 32.000 0.00 0.00 0.00 3.42
730 742 5.917541 AAACGAAAATCTGAAACTAGCGA 57.082 34.783 0.00 0.00 0.00 4.93
818 831 2.700773 GCATGAAGTTCGCACCCCC 61.701 63.158 0.00 0.00 0.00 5.40
898 911 1.024579 AACTGCTGTATTTCCGCCCG 61.025 55.000 0.00 0.00 0.00 6.13
972 985 2.370349 TGACTGACTGTCTAGCTAGCC 58.630 52.381 16.35 5.18 45.54 3.93
1062 1075 4.147449 TCCCACGCCATGCTCTCG 62.147 66.667 0.00 0.00 0.00 4.04
1239 1252 3.901797 CTCGTGGAACCACCTGCCC 62.902 68.421 16.85 0.00 43.49 5.36
2037 2050 1.203994 CCGAATGTGTACCTCCTCGTT 59.796 52.381 0.00 0.00 0.00 3.85
2313 2326 2.356313 AACGTGGAGTCGCTGCTG 60.356 61.111 0.00 0.00 0.00 4.41
2328 2341 1.685421 GCTGGAGAGTCTGGAGGCT 60.685 63.158 0.00 0.00 0.00 4.58
2688 2709 5.469479 CAACTTTAGGTTGCTTGTAATGGG 58.531 41.667 0.00 0.00 46.89 4.00
2690 2711 5.883180 ACTTTAGGTTGCTTGTAATGGGTA 58.117 37.500 0.00 0.00 0.00 3.69
2695 2716 5.681639 AGGTTGCTTGTAATGGGTAGTATC 58.318 41.667 0.00 0.00 0.00 2.24
2699 2720 7.387948 GGTTGCTTGTAATGGGTAGTATCATAG 59.612 40.741 0.00 0.00 0.00 2.23
2700 2721 7.849322 TGCTTGTAATGGGTAGTATCATAGA 57.151 36.000 0.00 0.00 0.00 1.98
2840 5593 4.569761 TGATACTCTCATTACGACCAGC 57.430 45.455 0.00 0.00 0.00 4.85
2849 5602 5.361571 TCTCATTACGACCAGCCTTATACAA 59.638 40.000 0.00 0.00 0.00 2.41
2854 5607 4.648651 ACGACCAGCCTTATACAAAGTTT 58.351 39.130 0.00 0.00 0.00 2.66
2913 5671 9.461312 ACATTTGAAGGTACATCATAAAAGCTA 57.539 29.630 0.00 0.00 35.43 3.32
2923 5681 9.690434 GTACATCATAAAAGCTAAAAGAGTTCG 57.310 33.333 0.00 0.00 0.00 3.95
2952 5710 5.955961 TCACACATCCTATCATTTGGAGA 57.044 39.130 0.00 0.00 35.63 3.71
2962 5720 8.417273 TCCTATCATTTGGAGATACGTCATAA 57.583 34.615 0.00 0.00 0.00 1.90
2963 5721 8.866093 TCCTATCATTTGGAGATACGTCATAAA 58.134 33.333 0.00 0.00 0.00 1.40
2964 5722 9.489084 CCTATCATTTGGAGATACGTCATAAAA 57.511 33.333 0.00 0.00 0.00 1.52
3099 5869 2.795231 TCTTGAGGGAAAGCCTCATG 57.205 50.000 0.00 0.48 42.79 3.07
3136 5907 5.865085 ACTGTGGCAGAGTTACATTTAAGA 58.135 37.500 12.08 0.00 35.18 2.10
3182 5959 7.398618 CCTGTCATCTACCCAATCATATCTAGT 59.601 40.741 0.00 0.00 0.00 2.57
3220 5997 7.620880 ACAAAACCTAGCTAGATAATGTGTCA 58.379 34.615 22.70 0.00 0.00 3.58
3224 6001 6.998802 ACCTAGCTAGATAATGTGTCAATCC 58.001 40.000 22.70 0.00 0.00 3.01
3333 6127 1.664965 ACGCTTCAACCAGCTCGAC 60.665 57.895 0.00 0.00 37.68 4.20
3342 6136 2.179517 CAGCTCGACAGTCGGACC 59.820 66.667 22.66 11.04 40.88 4.46
3347 6141 0.243907 CTCGACAGTCGGACCACAAT 59.756 55.000 22.66 0.00 40.88 2.71
3363 6157 3.375299 CCACAATAACCTTAGTGCAGCTC 59.625 47.826 0.00 0.00 32.39 4.09
3408 6202 2.676163 AAAGCAACTTCGGCGTCCCT 62.676 55.000 6.85 0.00 36.08 4.20
3449 6243 2.157834 TTCGAAAGAACTGCGGCTAA 57.842 45.000 0.00 0.00 46.92 3.09
3450 6244 1.710013 TCGAAAGAACTGCGGCTAAG 58.290 50.000 0.00 0.00 37.03 2.18
3451 6245 0.721718 CGAAAGAACTGCGGCTAAGG 59.278 55.000 0.00 0.00 0.00 2.69
3452 6246 0.448197 GAAAGAACTGCGGCTAAGGC 59.552 55.000 0.00 0.00 37.82 4.35
3453 6247 0.250727 AAAGAACTGCGGCTAAGGCA 60.251 50.000 0.00 0.00 40.87 4.75
3454 6248 0.955919 AAGAACTGCGGCTAAGGCAC 60.956 55.000 0.00 0.00 40.87 5.01
3455 6249 2.359975 AACTGCGGCTAAGGCACC 60.360 61.111 0.00 0.00 40.87 5.01
3456 6250 3.190738 AACTGCGGCTAAGGCACCA 62.191 57.895 0.00 0.00 40.87 4.17
3457 6251 3.127533 CTGCGGCTAAGGCACCAC 61.128 66.667 0.00 0.00 40.87 4.16
3458 6252 4.715523 TGCGGCTAAGGCACCACC 62.716 66.667 0.00 0.00 40.87 4.61
3485 6279 5.584251 ACCAGTGCCATTTACAAAACAAAAG 59.416 36.000 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.133216 GCCCTAGCTTTGCTTGTAAGC 59.867 52.381 9.59 9.59 46.47 3.09
15 16 2.421424 CTGCCCTAGCTTTGCTTGTAAG 59.579 50.000 0.00 0.00 40.44 2.34
16 17 2.224769 ACTGCCCTAGCTTTGCTTGTAA 60.225 45.455 0.00 0.00 40.44 2.41
17 18 1.351017 ACTGCCCTAGCTTTGCTTGTA 59.649 47.619 0.00 0.00 40.44 2.41
18 19 0.111253 ACTGCCCTAGCTTTGCTTGT 59.889 50.000 0.00 0.00 40.44 3.16
19 20 1.068055 CAACTGCCCTAGCTTTGCTTG 60.068 52.381 0.00 0.00 40.44 4.01
20 21 1.251251 CAACTGCCCTAGCTTTGCTT 58.749 50.000 0.00 0.00 40.44 3.91
21 22 1.246737 GCAACTGCCCTAGCTTTGCT 61.247 55.000 9.28 0.00 46.60 3.91
22 23 1.213799 GCAACTGCCCTAGCTTTGC 59.786 57.895 0.00 0.00 45.27 3.68
33 34 1.937546 GCAGGGTACATGGCAACTGC 61.938 60.000 15.51 15.51 43.50 4.40
34 35 0.608856 TGCAGGGTACATGGCAACTG 60.609 55.000 0.00 1.51 32.54 3.16
35 36 0.112218 TTGCAGGGTACATGGCAACT 59.888 50.000 11.68 0.00 40.94 3.16
36 37 0.965439 TTTGCAGGGTACATGGCAAC 59.035 50.000 14.37 0.00 44.99 4.17
37 38 1.709578 TTTTGCAGGGTACATGGCAA 58.290 45.000 11.68 11.68 43.79 4.52
38 39 1.342819 GTTTTTGCAGGGTACATGGCA 59.657 47.619 0.00 0.00 0.00 4.92
39 40 1.342819 TGTTTTTGCAGGGTACATGGC 59.657 47.619 0.00 0.00 0.00 4.40
40 41 2.363680 TGTGTTTTTGCAGGGTACATGG 59.636 45.455 0.00 0.00 0.00 3.66
41 42 3.724508 TGTGTTTTTGCAGGGTACATG 57.275 42.857 0.00 0.00 0.00 3.21
42 43 3.006752 CCATGTGTTTTTGCAGGGTACAT 59.993 43.478 0.00 0.00 32.52 2.29
43 44 2.363680 CCATGTGTTTTTGCAGGGTACA 59.636 45.455 0.00 0.00 32.52 2.90
44 45 2.866065 GCCATGTGTTTTTGCAGGGTAC 60.866 50.000 0.00 0.00 38.64 3.34
45 46 1.342819 GCCATGTGTTTTTGCAGGGTA 59.657 47.619 0.00 0.00 38.64 3.69
46 47 0.106521 GCCATGTGTTTTTGCAGGGT 59.893 50.000 0.00 0.00 38.64 4.34
47 48 0.106335 TGCCATGTGTTTTTGCAGGG 59.894 50.000 0.00 0.00 39.31 4.45
48 49 1.598601 GTTGCCATGTGTTTTTGCAGG 59.401 47.619 0.00 0.00 32.88 4.85
49 50 2.285756 CAGTTGCCATGTGTTTTTGCAG 59.714 45.455 0.00 0.00 32.88 4.41
50 51 2.277969 CAGTTGCCATGTGTTTTTGCA 58.722 42.857 0.00 0.00 0.00 4.08
51 52 1.003652 GCAGTTGCCATGTGTTTTTGC 60.004 47.619 0.00 0.00 34.31 3.68
64 65 2.341176 CCCAAAGCTGGCAGTTGC 59.659 61.111 17.16 2.22 41.99 4.17
65 66 1.364901 CACCCAAAGCTGGCAGTTG 59.635 57.895 17.16 13.14 41.99 3.16
66 67 1.076044 ACACCCAAAGCTGGCAGTT 60.076 52.632 17.16 7.32 41.99 3.16
67 68 1.829533 CACACCCAAAGCTGGCAGT 60.830 57.895 17.16 0.00 41.99 4.40
68 69 2.567497 CCACACCCAAAGCTGGCAG 61.567 63.158 10.94 10.94 41.99 4.85
69 70 2.521465 CCACACCCAAAGCTGGCA 60.521 61.111 0.00 0.00 41.99 4.92
70 71 3.305516 CCCACACCCAAAGCTGGC 61.306 66.667 0.00 0.00 41.99 4.85
71 72 3.305516 GCCCACACCCAAAGCTGG 61.306 66.667 0.00 0.00 43.10 4.85
72 73 3.673484 CGCCCACACCCAAAGCTG 61.673 66.667 0.00 0.00 0.00 4.24
73 74 3.850098 CTCGCCCACACCCAAAGCT 62.850 63.158 0.00 0.00 0.00 3.74
74 75 3.365265 CTCGCCCACACCCAAAGC 61.365 66.667 0.00 0.00 0.00 3.51
75 76 2.672996 CCTCGCCCACACCCAAAG 60.673 66.667 0.00 0.00 0.00 2.77
76 77 3.172106 TCCTCGCCCACACCCAAA 61.172 61.111 0.00 0.00 0.00 3.28
77 78 3.636231 CTCCTCGCCCACACCCAA 61.636 66.667 0.00 0.00 0.00 4.12
78 79 4.631740 TCTCCTCGCCCACACCCA 62.632 66.667 0.00 0.00 0.00 4.51
79 80 4.083862 GTCTCCTCGCCCACACCC 62.084 72.222 0.00 0.00 0.00 4.61
80 81 4.436998 CGTCTCCTCGCCCACACC 62.437 72.222 0.00 0.00 0.00 4.16
81 82 4.436998 CCGTCTCCTCGCCCACAC 62.437 72.222 0.00 0.00 0.00 3.82
88 89 4.778415 CACACGCCCGTCTCCTCG 62.778 72.222 0.00 0.00 0.00 4.63
89 90 4.436998 CCACACGCCCGTCTCCTC 62.437 72.222 0.00 0.00 0.00 3.71
96 97 3.679738 ATTTTGCCCACACGCCCG 61.680 61.111 0.00 0.00 0.00 6.13
97 98 1.887344 ATCATTTTGCCCACACGCCC 61.887 55.000 0.00 0.00 0.00 6.13
98 99 0.814457 TATCATTTTGCCCACACGCC 59.186 50.000 0.00 0.00 0.00 5.68
99 100 2.645730 TTATCATTTTGCCCACACGC 57.354 45.000 0.00 0.00 0.00 5.34
100 101 2.914214 CGTTTATCATTTTGCCCACACG 59.086 45.455 0.00 0.00 0.00 4.49
101 102 2.666022 GCGTTTATCATTTTGCCCACAC 59.334 45.455 0.00 0.00 0.00 3.82
102 103 2.353208 GGCGTTTATCATTTTGCCCACA 60.353 45.455 0.00 0.00 36.51 4.17
103 104 2.267426 GGCGTTTATCATTTTGCCCAC 58.733 47.619 0.00 0.00 36.51 4.61
104 105 2.663826 GGCGTTTATCATTTTGCCCA 57.336 45.000 0.00 0.00 36.51 5.36
106 107 2.267426 GTGGGCGTTTATCATTTTGCC 58.733 47.619 0.00 0.00 41.72 4.52
107 108 2.666022 GTGTGGGCGTTTATCATTTTGC 59.334 45.455 0.00 0.00 0.00 3.68
108 109 3.672867 GTGTGTGGGCGTTTATCATTTTG 59.327 43.478 0.00 0.00 0.00 2.44
109 110 3.305744 GGTGTGTGGGCGTTTATCATTTT 60.306 43.478 0.00 0.00 0.00 1.82
110 111 2.230266 GGTGTGTGGGCGTTTATCATTT 59.770 45.455 0.00 0.00 0.00 2.32
111 112 1.816224 GGTGTGTGGGCGTTTATCATT 59.184 47.619 0.00 0.00 0.00 2.57
112 113 1.271652 TGGTGTGTGGGCGTTTATCAT 60.272 47.619 0.00 0.00 0.00 2.45
113 114 0.108774 TGGTGTGTGGGCGTTTATCA 59.891 50.000 0.00 0.00 0.00 2.15
114 115 0.802494 CTGGTGTGTGGGCGTTTATC 59.198 55.000 0.00 0.00 0.00 1.75
115 116 1.241315 GCTGGTGTGTGGGCGTTTAT 61.241 55.000 0.00 0.00 0.00 1.40
116 117 1.894756 GCTGGTGTGTGGGCGTTTA 60.895 57.895 0.00 0.00 0.00 2.01
117 118 3.216292 GCTGGTGTGTGGGCGTTT 61.216 61.111 0.00 0.00 0.00 3.60
123 124 4.351054 GAGGGGGCTGGTGTGTGG 62.351 72.222 0.00 0.00 0.00 4.17
124 125 3.252284 AGAGGGGGCTGGTGTGTG 61.252 66.667 0.00 0.00 0.00 3.82
125 126 3.252284 CAGAGGGGGCTGGTGTGT 61.252 66.667 0.00 0.00 32.26 3.72
126 127 4.729918 GCAGAGGGGGCTGGTGTG 62.730 72.222 0.00 0.00 36.41 3.82
135 136 4.680237 TTCACGCACGCAGAGGGG 62.680 66.667 0.00 0.00 35.05 4.79
136 137 2.664851 TTTCACGCACGCAGAGGG 60.665 61.111 0.00 0.00 37.05 4.30
137 138 1.956170 AGTTTCACGCACGCAGAGG 60.956 57.895 0.00 0.00 0.00 3.69
138 139 1.202568 CAGTTTCACGCACGCAGAG 59.797 57.895 0.00 0.00 0.00 3.35
139 140 2.243957 CCAGTTTCACGCACGCAGA 61.244 57.895 0.00 0.00 0.00 4.26
140 141 2.249309 CCAGTTTCACGCACGCAG 59.751 61.111 0.00 0.00 0.00 5.18
141 142 2.512745 ACCAGTTTCACGCACGCA 60.513 55.556 0.00 0.00 0.00 5.24
142 143 2.052237 CACCAGTTTCACGCACGC 60.052 61.111 0.00 0.00 0.00 5.34
143 144 1.011242 CACACCAGTTTCACGCACG 60.011 57.895 0.00 0.00 0.00 5.34
144 145 0.248054 CACACACCAGTTTCACGCAC 60.248 55.000 0.00 0.00 0.00 5.34
145 146 1.372838 CCACACACCAGTTTCACGCA 61.373 55.000 0.00 0.00 0.00 5.24
146 147 1.355210 CCACACACCAGTTTCACGC 59.645 57.895 0.00 0.00 0.00 5.34
147 148 2.021722 CCCACACACCAGTTTCACG 58.978 57.895 0.00 0.00 0.00 4.35
148 149 1.733526 GCCCACACACCAGTTTCAC 59.266 57.895 0.00 0.00 0.00 3.18
149 150 1.821759 CGCCCACACACCAGTTTCA 60.822 57.895 0.00 0.00 0.00 2.69
150 151 1.098712 TTCGCCCACACACCAGTTTC 61.099 55.000 0.00 0.00 0.00 2.78
151 152 0.467290 ATTCGCCCACACACCAGTTT 60.467 50.000 0.00 0.00 0.00 2.66
152 153 0.467290 AATTCGCCCACACACCAGTT 60.467 50.000 0.00 0.00 0.00 3.16
153 154 1.150536 AATTCGCCCACACACCAGT 59.849 52.632 0.00 0.00 0.00 4.00
154 155 1.580942 CAATTCGCCCACACACCAG 59.419 57.895 0.00 0.00 0.00 4.00
155 156 2.560119 GCAATTCGCCCACACACCA 61.560 57.895 0.00 0.00 32.94 4.17
156 157 0.958382 TAGCAATTCGCCCACACACC 60.958 55.000 0.00 0.00 44.04 4.16
157 158 0.878416 TTAGCAATTCGCCCACACAC 59.122 50.000 0.00 0.00 44.04 3.82
158 159 1.268352 GTTTAGCAATTCGCCCACACA 59.732 47.619 0.00 0.00 44.04 3.72
159 160 1.727857 CGTTTAGCAATTCGCCCACAC 60.728 52.381 0.00 0.00 44.04 3.82
160 161 0.519519 CGTTTAGCAATTCGCCCACA 59.480 50.000 0.00 0.00 44.04 4.17
161 162 3.306206 CGTTTAGCAATTCGCCCAC 57.694 52.632 0.00 0.00 44.04 4.61
173 174 1.852067 GCTGGTGTGTGGGCGTTTAG 61.852 60.000 0.00 0.00 0.00 1.85
174 175 1.894756 GCTGGTGTGTGGGCGTTTA 60.895 57.895 0.00 0.00 0.00 2.01
175 176 3.216292 GCTGGTGTGTGGGCGTTT 61.216 61.111 0.00 0.00 0.00 3.60
193 194 2.490509 GTTCTTTTTCACCATACGGGGG 59.509 50.000 0.00 0.00 43.74 5.40
194 195 2.160813 CGTTCTTTTTCACCATACGGGG 59.839 50.000 0.00 0.00 42.91 5.73
195 196 2.809696 ACGTTCTTTTTCACCATACGGG 59.190 45.455 0.00 0.00 44.81 5.28
196 197 3.249080 ACACGTTCTTTTTCACCATACGG 59.751 43.478 0.00 0.00 38.77 4.02
197 198 4.208355 CACACGTTCTTTTTCACCATACG 58.792 43.478 0.00 0.00 0.00 3.06
198 199 4.533222 CCACACGTTCTTTTTCACCATAC 58.467 43.478 0.00 0.00 0.00 2.39
199 200 3.566322 CCCACACGTTCTTTTTCACCATA 59.434 43.478 0.00 0.00 0.00 2.74
200 201 2.360801 CCCACACGTTCTTTTTCACCAT 59.639 45.455 0.00 0.00 0.00 3.55
201 202 1.746220 CCCACACGTTCTTTTTCACCA 59.254 47.619 0.00 0.00 0.00 4.17
202 203 1.535226 GCCCACACGTTCTTTTTCACC 60.535 52.381 0.00 0.00 0.00 4.02
203 204 1.835121 GCCCACACGTTCTTTTTCAC 58.165 50.000 0.00 0.00 0.00 3.18
204 205 0.378962 CGCCCACACGTTCTTTTTCA 59.621 50.000 0.00 0.00 0.00 2.69
205 206 0.658897 TCGCCCACACGTTCTTTTTC 59.341 50.000 0.00 0.00 0.00 2.29
206 207 0.379316 GTCGCCCACACGTTCTTTTT 59.621 50.000 0.00 0.00 0.00 1.94
207 208 1.441732 GGTCGCCCACACGTTCTTTT 61.442 55.000 0.00 0.00 0.00 2.27
208 209 1.890510 GGTCGCCCACACGTTCTTT 60.891 57.895 0.00 0.00 0.00 2.52
209 210 2.280592 GGTCGCCCACACGTTCTT 60.281 61.111 0.00 0.00 0.00 2.52
210 211 3.515316 CTGGTCGCCCACACGTTCT 62.515 63.158 0.00 0.00 35.17 3.01
211 212 2.781595 ATCTGGTCGCCCACACGTTC 62.782 60.000 0.00 0.00 35.17 3.95
212 213 2.879233 ATCTGGTCGCCCACACGTT 61.879 57.895 0.00 0.00 35.17 3.99
213 214 3.311110 ATCTGGTCGCCCACACGT 61.311 61.111 0.00 0.00 35.17 4.49
214 215 2.779951 TTCATCTGGTCGCCCACACG 62.780 60.000 0.00 0.00 35.17 4.49
215 216 0.392998 ATTCATCTGGTCGCCCACAC 60.393 55.000 0.00 0.00 35.17 3.82
216 217 0.392863 CATTCATCTGGTCGCCCACA 60.393 55.000 0.00 0.00 35.17 4.17
217 218 1.718757 GCATTCATCTGGTCGCCCAC 61.719 60.000 0.00 0.00 35.17 4.61
218 219 1.451927 GCATTCATCTGGTCGCCCA 60.452 57.895 0.00 0.00 38.87 5.36
219 220 2.189499 GGCATTCATCTGGTCGCCC 61.189 63.158 0.00 0.00 33.31 6.13
220 221 2.189499 GGGCATTCATCTGGTCGCC 61.189 63.158 0.00 0.00 38.85 5.54
221 222 1.451927 TGGGCATTCATCTGGTCGC 60.452 57.895 0.00 0.00 0.00 5.19
222 223 0.392863 TGTGGGCATTCATCTGGTCG 60.393 55.000 0.00 0.00 0.00 4.79
223 224 1.098050 GTGTGGGCATTCATCTGGTC 58.902 55.000 0.00 0.00 0.00 4.02
224 225 0.405198 TGTGTGGGCATTCATCTGGT 59.595 50.000 0.00 0.00 0.00 4.00
225 226 0.813184 GTGTGTGGGCATTCATCTGG 59.187 55.000 0.00 0.00 0.00 3.86
226 227 0.813184 GGTGTGTGGGCATTCATCTG 59.187 55.000 0.00 0.00 0.00 2.90
227 228 0.405198 TGGTGTGTGGGCATTCATCT 59.595 50.000 0.00 0.00 0.00 2.90
228 229 0.813184 CTGGTGTGTGGGCATTCATC 59.187 55.000 0.00 0.00 0.00 2.92
229 230 1.252904 GCTGGTGTGTGGGCATTCAT 61.253 55.000 0.00 0.00 0.00 2.57
230 231 1.902918 GCTGGTGTGTGGGCATTCA 60.903 57.895 0.00 0.00 0.00 2.57
231 232 1.181098 AAGCTGGTGTGTGGGCATTC 61.181 55.000 0.00 0.00 0.00 2.67
232 233 0.112218 TAAGCTGGTGTGTGGGCATT 59.888 50.000 0.00 0.00 0.00 3.56
233 234 0.322816 CTAAGCTGGTGTGTGGGCAT 60.323 55.000 0.00 0.00 0.00 4.40
234 235 1.073025 CTAAGCTGGTGTGTGGGCA 59.927 57.895 0.00 0.00 0.00 5.36
235 236 0.955919 GACTAAGCTGGTGTGTGGGC 60.956 60.000 0.00 0.00 0.00 5.36
236 237 0.321653 GGACTAAGCTGGTGTGTGGG 60.322 60.000 0.00 0.00 0.00 4.61
237 238 0.687354 AGGACTAAGCTGGTGTGTGG 59.313 55.000 0.00 0.00 0.00 4.17
238 239 2.671351 CGTAGGACTAAGCTGGTGTGTG 60.671 54.545 0.00 0.00 0.00 3.82
239 240 1.544691 CGTAGGACTAAGCTGGTGTGT 59.455 52.381 0.00 0.00 0.00 3.72
240 241 1.544691 ACGTAGGACTAAGCTGGTGTG 59.455 52.381 0.00 0.00 0.00 3.82
241 242 1.544691 CACGTAGGACTAAGCTGGTGT 59.455 52.381 0.00 0.00 0.00 4.16
242 243 1.135083 CCACGTAGGACTAAGCTGGTG 60.135 57.143 0.00 0.00 41.22 4.17
243 244 1.183549 CCACGTAGGACTAAGCTGGT 58.816 55.000 0.00 0.00 41.22 4.00
244 245 0.179108 GCCACGTAGGACTAAGCTGG 60.179 60.000 8.04 8.40 41.22 4.85
245 246 0.530744 TGCCACGTAGGACTAAGCTG 59.469 55.000 8.04 0.00 41.22 4.24
246 247 0.531200 GTGCCACGTAGGACTAAGCT 59.469 55.000 8.04 0.00 41.22 3.74
247 248 0.245539 TGTGCCACGTAGGACTAAGC 59.754 55.000 7.20 0.00 41.22 3.09
248 249 1.271379 TGTGTGCCACGTAGGACTAAG 59.729 52.381 7.20 0.00 41.22 2.18
249 250 1.330234 TGTGTGCCACGTAGGACTAA 58.670 50.000 7.20 0.00 41.22 2.24
250 251 1.330234 TTGTGTGCCACGTAGGACTA 58.670 50.000 7.20 0.00 41.22 2.59
251 252 0.466543 TTTGTGTGCCACGTAGGACT 59.533 50.000 7.20 0.00 41.22 3.85
252 253 1.301423 TTTTGTGTGCCACGTAGGAC 58.699 50.000 0.00 0.00 41.22 3.85
253 254 1.671845 GTTTTTGTGTGCCACGTAGGA 59.328 47.619 8.04 0.00 41.22 2.94
254 255 1.673920 AGTTTTTGTGTGCCACGTAGG 59.326 47.619 0.00 0.00 37.14 3.18
255 256 2.715268 CAGTTTTTGTGTGCCACGTAG 58.285 47.619 0.00 0.00 37.14 3.51
256 257 1.202200 GCAGTTTTTGTGTGCCACGTA 60.202 47.619 0.00 0.00 37.14 3.57
257 258 0.457681 GCAGTTTTTGTGTGCCACGT 60.458 50.000 0.00 0.00 37.14 4.49
258 259 0.179140 AGCAGTTTTTGTGTGCCACG 60.179 50.000 0.00 0.00 37.98 4.94
259 260 2.357637 TCTAGCAGTTTTTGTGTGCCAC 59.642 45.455 0.00 0.00 37.98 5.01
260 261 2.649190 TCTAGCAGTTTTTGTGTGCCA 58.351 42.857 0.00 0.00 37.98 4.92
261 262 3.372060 GTTCTAGCAGTTTTTGTGTGCC 58.628 45.455 0.00 0.00 37.98 5.01
262 263 3.035942 CGTTCTAGCAGTTTTTGTGTGC 58.964 45.455 0.00 0.00 37.48 4.57
263 264 3.035942 GCGTTCTAGCAGTTTTTGTGTG 58.964 45.455 0.00 0.00 37.05 3.82
264 265 2.680841 TGCGTTCTAGCAGTTTTTGTGT 59.319 40.909 0.00 0.00 42.92 3.72
265 266 3.332761 TGCGTTCTAGCAGTTTTTGTG 57.667 42.857 0.00 0.00 42.92 3.33
274 275 2.346803 GAATCTTGGTGCGTTCTAGCA 58.653 47.619 0.00 0.00 45.96 3.49
275 276 1.324736 CGAATCTTGGTGCGTTCTAGC 59.675 52.381 0.00 0.00 37.71 3.42
276 277 2.345641 CACGAATCTTGGTGCGTTCTAG 59.654 50.000 0.00 0.00 34.37 2.43
277 278 2.333926 CACGAATCTTGGTGCGTTCTA 58.666 47.619 0.00 0.00 34.37 2.10
278 279 1.148310 CACGAATCTTGGTGCGTTCT 58.852 50.000 0.00 0.00 34.37 3.01
279 280 3.657537 CACGAATCTTGGTGCGTTC 57.342 52.632 0.00 0.00 34.37 3.95
284 285 3.495193 CAATTCTGCACGAATCTTGGTG 58.505 45.455 10.52 1.21 41.42 4.17
285 286 2.489329 CCAATTCTGCACGAATCTTGGT 59.511 45.455 15.74 1.42 41.42 3.67
286 287 2.489329 ACCAATTCTGCACGAATCTTGG 59.511 45.455 19.17 19.17 43.07 3.61
287 288 3.837213 ACCAATTCTGCACGAATCTTG 57.163 42.857 10.52 7.92 41.42 3.02
288 289 3.057315 CCAACCAATTCTGCACGAATCTT 60.057 43.478 10.52 3.02 41.42 2.40
289 290 2.489329 CCAACCAATTCTGCACGAATCT 59.511 45.455 10.52 1.96 41.42 2.40
290 291 2.487762 TCCAACCAATTCTGCACGAATC 59.512 45.455 10.52 0.00 41.42 2.52
291 292 2.228822 GTCCAACCAATTCTGCACGAAT 59.771 45.455 5.80 5.80 44.10 3.34
292 293 1.606668 GTCCAACCAATTCTGCACGAA 59.393 47.619 0.00 1.85 35.78 3.85
293 294 1.234821 GTCCAACCAATTCTGCACGA 58.765 50.000 0.00 0.00 0.00 4.35
294 295 0.110238 CGTCCAACCAATTCTGCACG 60.110 55.000 0.00 0.00 0.00 5.34
295 296 1.234821 TCGTCCAACCAATTCTGCAC 58.765 50.000 0.00 0.00 0.00 4.57
296 297 1.879380 CTTCGTCCAACCAATTCTGCA 59.121 47.619 0.00 0.00 0.00 4.41
297 298 2.151202 TCTTCGTCCAACCAATTCTGC 58.849 47.619 0.00 0.00 0.00 4.26
298 299 3.375299 GGATCTTCGTCCAACCAATTCTG 59.625 47.826 0.00 0.00 38.20 3.02
299 300 3.009033 TGGATCTTCGTCCAACCAATTCT 59.991 43.478 0.00 0.00 45.03 2.40
300 301 3.343617 TGGATCTTCGTCCAACCAATTC 58.656 45.455 0.00 0.00 45.03 2.17
301 302 3.433306 TGGATCTTCGTCCAACCAATT 57.567 42.857 0.00 0.00 45.03 2.32
309 310 0.460284 ACACGCATGGATCTTCGTCC 60.460 55.000 0.00 0.00 38.81 4.79
310 311 0.647410 CACACGCATGGATCTTCGTC 59.353 55.000 0.00 0.00 32.38 4.20
311 312 0.740868 CCACACGCATGGATCTTCGT 60.741 55.000 0.00 0.00 43.02 3.85
312 313 1.431488 CCCACACGCATGGATCTTCG 61.431 60.000 7.11 0.00 43.02 3.79
313 314 1.718757 GCCCACACGCATGGATCTTC 61.719 60.000 7.11 0.00 43.02 2.87
314 315 1.750399 GCCCACACGCATGGATCTT 60.750 57.895 7.11 0.00 43.02 2.40
315 316 2.124570 GCCCACACGCATGGATCT 60.125 61.111 7.11 0.00 43.02 2.75
316 317 3.576356 CGCCCACACGCATGGATC 61.576 66.667 7.11 0.00 43.02 3.36
317 318 4.094646 TCGCCCACACGCATGGAT 62.095 61.111 7.11 0.00 43.02 3.41
318 319 4.758251 CTCGCCCACACGCATGGA 62.758 66.667 7.11 0.00 43.02 3.41
320 321 3.049674 AACTCGCCCACACGCATG 61.050 61.111 0.00 0.00 0.00 4.06
321 322 3.049674 CAACTCGCCCACACGCAT 61.050 61.111 0.00 0.00 0.00 4.73
332 333 4.680237 TGGGCGTCTGGCAACTCG 62.680 66.667 0.00 0.00 46.16 4.18
333 334 3.050275 GTGGGCGTCTGGCAACTC 61.050 66.667 0.00 0.00 46.16 3.01
334 335 3.872603 TGTGGGCGTCTGGCAACT 61.873 61.111 0.00 0.00 44.75 3.16
335 336 3.660111 GTGTGGGCGTCTGGCAAC 61.660 66.667 0.00 0.00 46.16 4.17
339 340 4.602259 ACACGTGTGGGCGTCTGG 62.602 66.667 22.71 0.00 43.83 3.86
340 341 3.337889 CACACGTGTGGGCGTCTG 61.338 66.667 35.65 12.14 43.83 3.51
348 349 1.202486 AGTCTAACACCCACACGTGTG 60.202 52.381 36.13 36.13 46.19 3.82
350 351 2.234300 AAGTCTAACACCCACACGTG 57.766 50.000 15.48 15.48 39.75 4.49
351 352 2.994186 AAAGTCTAACACCCACACGT 57.006 45.000 0.00 0.00 0.00 4.49
352 353 2.220133 CGAAAAGTCTAACACCCACACG 59.780 50.000 0.00 0.00 0.00 4.49
353 354 3.460103 TCGAAAAGTCTAACACCCACAC 58.540 45.455 0.00 0.00 0.00 3.82
354 355 3.823281 TCGAAAAGTCTAACACCCACA 57.177 42.857 0.00 0.00 0.00 4.17
355 356 4.812626 TCTTTCGAAAAGTCTAACACCCAC 59.187 41.667 12.41 0.00 0.00 4.61
356 357 5.026038 TCTTTCGAAAAGTCTAACACCCA 57.974 39.130 12.41 0.00 0.00 4.51
357 358 5.996669 TTCTTTCGAAAAGTCTAACACCC 57.003 39.130 12.41 0.00 0.00 4.61
404 405 0.385974 CGTTTGCTGCTAGCGCTTTT 60.386 50.000 18.68 0.00 46.26 2.27
419 420 3.550656 CGAGGCTTTCGCTCGTTT 58.449 55.556 0.00 0.00 43.22 3.60
429 430 1.534175 CGTTCTTAGCGATCGAGGCTT 60.534 52.381 21.57 0.47 41.80 4.35
430 431 0.029567 CGTTCTTAGCGATCGAGGCT 59.970 55.000 21.57 16.70 44.35 4.58
458 459 1.754803 TCTGTCCCGCCTACAGTATTG 59.245 52.381 9.08 0.00 43.88 1.90
487 488 4.582656 AGCCCTATATCTCGCTTATAGCAG 59.417 45.833 0.00 0.00 42.58 4.24
702 713 8.968242 GCTAGTTTCAGATTTTCGTTTTCAAAT 58.032 29.630 0.00 0.00 0.00 2.32
703 714 7.165154 CGCTAGTTTCAGATTTTCGTTTTCAAA 59.835 33.333 0.00 0.00 0.00 2.69
711 723 7.006564 GTGAATTTCGCTAGTTTCAGATTTTCG 59.993 37.037 2.69 0.00 0.00 3.46
728 740 3.746089 TCATCGTGCAATGTGAATTTCG 58.254 40.909 0.00 0.00 0.00 3.46
730 742 5.097529 GTGATCATCGTGCAATGTGAATTT 58.902 37.500 0.00 0.00 0.00 1.82
818 831 2.411031 GCGTTGTAAGGTGTTGACATCG 60.411 50.000 0.00 0.00 38.62 3.84
898 911 2.885266 GGAAACAAGGGAGAAGGAACAC 59.115 50.000 0.00 0.00 0.00 3.32
972 985 0.030101 GCACTAGCTCTACTGCTCGG 59.970 60.000 0.00 0.00 42.97 4.63
1062 1075 4.814041 AGGAGGGCAGGGGAGAGC 62.814 72.222 0.00 0.00 0.00 4.09
1239 1252 1.991430 CGGCTTCGACGACATGAAG 59.009 57.895 0.00 0.00 43.48 3.02
1261 1274 1.153568 CGATCTTGAGCTTGGCGGA 60.154 57.895 0.00 0.00 0.00 5.54
1641 1654 0.178970 GGGCGAGGTCCTGGTAGATA 60.179 60.000 0.00 0.00 0.00 1.98
1897 1910 1.458588 GGAGCCCGATCTCTTCCCT 60.459 63.158 0.00 0.00 33.70 4.20
2022 2035 1.669440 GGCAACGAGGAGGTACACA 59.331 57.895 0.00 0.00 0.00 3.72
2313 2326 1.612395 CCACAGCCTCCAGACTCTCC 61.612 65.000 0.00 0.00 0.00 3.71
2635 2656 3.531538 TGAATAAGGTGTCGCTCATTCC 58.468 45.455 0.00 0.00 0.00 3.01
2673 2694 5.433526 TGATACTACCCATTACAAGCAACC 58.566 41.667 0.00 0.00 0.00 3.77
2675 2696 8.257602 TCTATGATACTACCCATTACAAGCAA 57.742 34.615 0.00 0.00 0.00 3.91
2826 5579 5.196341 TGTATAAGGCTGGTCGTAATGAG 57.804 43.478 0.00 0.00 0.00 2.90
2892 5649 9.733556 TCTTTTAGCTTTTATGATGTACCTTCA 57.266 29.630 0.00 0.00 0.00 3.02
2942 5700 7.047891 AGCTTTTATGACGTATCTCCAAATGA 58.952 34.615 0.00 0.00 0.00 2.57
2952 5710 7.710907 TGCATCTTTCTAGCTTTTATGACGTAT 59.289 33.333 0.00 0.00 0.00 3.06
2962 5720 7.383300 GTCACAAATTTGCATCTTTCTAGCTTT 59.617 33.333 18.12 0.00 0.00 3.51
2963 5721 6.865205 GTCACAAATTTGCATCTTTCTAGCTT 59.135 34.615 18.12 0.00 0.00 3.74
2964 5722 6.385033 GTCACAAATTTGCATCTTTCTAGCT 58.615 36.000 18.12 0.00 0.00 3.32
2965 5723 5.574443 GGTCACAAATTTGCATCTTTCTAGC 59.426 40.000 18.12 0.14 0.00 3.42
3099 5869 4.877282 TGCCACAGTTTAAATAAAGTGCC 58.123 39.130 16.79 8.99 45.78 5.01
3136 5907 9.899661 TGACAGGTTTTTATTAGCACATATACT 57.100 29.630 0.00 0.00 0.00 2.12
3149 5920 7.410174 TGATTGGGTAGATGACAGGTTTTTAT 58.590 34.615 0.00 0.00 0.00 1.40
3196 5973 8.492673 TTGACACATTATCTAGCTAGGTTTTG 57.507 34.615 20.58 15.69 0.00 2.44
3204 5981 7.255381 GCAAATGGATTGACACATTATCTAGCT 60.255 37.037 0.00 0.00 41.85 3.32
3209 5986 6.698766 GGAAGCAAATGGATTGACACATTATC 59.301 38.462 0.00 0.00 41.85 1.75
3220 5997 2.833943 GTCCAAGGGAAGCAAATGGATT 59.166 45.455 0.00 0.00 41.83 3.01
3224 6001 3.592059 CATTGTCCAAGGGAAGCAAATG 58.408 45.455 0.00 0.00 31.38 2.32
3285 6079 0.539986 GACCGACATTTGGAGCCCTA 59.460 55.000 0.00 0.00 0.00 3.53
3333 6127 2.762535 AGGTTATTGTGGTCCGACTG 57.237 50.000 0.00 0.00 0.00 3.51
3342 6136 4.002982 TGAGCTGCACTAAGGTTATTGTG 58.997 43.478 1.02 0.00 0.00 3.33
3368 6162 8.669946 GCTTTAGGATCTGAAGCTAATTACTT 57.330 34.615 14.49 1.47 45.52 2.24
3390 6184 2.668550 GGGACGCCGAAGTTGCTT 60.669 61.111 0.00 0.00 0.00 3.91
3408 6202 1.076412 TTGGGGTGAAGCTGTTGCA 60.076 52.632 0.00 0.00 42.74 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.