Multiple sequence alignment - TraesCS3D01G209800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G209800 chr3D 100.000 4335 0 0 1 4335 277220768 277225102 0.000000e+00 8006.0
1 TraesCS3D01G209800 chr3D 86.849 403 53 0 1348 1750 59856443 59856041 6.610000e-123 451.0
2 TraesCS3D01G209800 chr3D 91.919 99 7 1 4086 4183 569544808 569544710 2.100000e-28 137.0
3 TraesCS3D01G209800 chr3D 91.000 100 9 0 4084 4183 239142932 239143031 7.560000e-28 135.0
4 TraesCS3D01G209800 chr3D 82.812 64 11 0 3837 3900 404542998 404542935 1.680000e-04 58.4
5 TraesCS3D01G209800 chr3B 92.639 4157 111 79 1 4086 372897903 372893871 0.000000e+00 5801.0
6 TraesCS3D01G209800 chr3B 86.386 404 53 2 1348 1750 95461696 95461294 1.430000e-119 440.0
7 TraesCS3D01G209800 chr3B 90.323 62 5 1 4273 4333 372893869 372893808 3.590000e-11 80.5
8 TraesCS3D01G209800 chr3B 74.359 195 39 8 3713 3900 487873773 487873583 6.010000e-09 73.1
9 TraesCS3D01G209800 chr3A 91.050 3687 115 66 534 4088 362203008 362199405 0.000000e+00 4782.0
10 TraesCS3D01G209800 chr3A 87.175 538 18 16 1 516 362203504 362202996 8.140000e-157 564.0
11 TraesCS3D01G209800 chr3A 86.420 405 48 5 1348 1750 178987287 178986888 1.850000e-118 436.0
12 TraesCS3D01G209800 chr3A 86.104 403 56 0 1348 1750 68869406 68869004 6.660000e-118 435.0
13 TraesCS3D01G209800 chr3A 96.667 60 1 1 4270 4329 362199408 362199350 9.920000e-17 99.0
14 TraesCS3D01G209800 chr3A 100.000 29 0 0 3916 3944 667261229 667261257 2.000000e-03 54.7
15 TraesCS3D01G209800 chr4B 87.105 411 49 2 1359 1768 531580972 531580565 3.050000e-126 462.0
16 TraesCS3D01G209800 chr4B 81.443 194 28 5 3713 3900 652971820 652971629 7.510000e-33 152.0
17 TraesCS3D01G209800 chr4B 100.000 35 0 0 367 401 44947312 44947346 1.010000e-06 65.8
18 TraesCS3D01G209800 chr4D 87.786 393 45 1 1359 1751 433393640 433393251 1.420000e-124 457.0
19 TraesCS3D01G209800 chr4D 83.598 189 24 5 3713 3897 195015945 195015760 2.070000e-38 171.0
20 TraesCS3D01G209800 chr4D 92.000 100 8 0 4084 4183 404840988 404840889 1.630000e-29 141.0
21 TraesCS3D01G209800 chr4D 97.059 34 1 0 3664 3697 16054690 16054657 1.680000e-04 58.4
22 TraesCS3D01G209800 chr4A 87.563 394 44 3 1359 1751 34787845 34787456 6.610000e-123 451.0
23 TraesCS3D01G209800 chr4A 80.252 238 25 11 542 775 624767644 624767425 4.490000e-35 159.0
24 TraesCS3D01G209800 chr4A 97.222 36 1 0 3662 3697 584545455 584545420 1.300000e-05 62.1
25 TraesCS3D01G209800 chr4A 100.000 29 0 0 367 395 624767738 624767710 2.000000e-03 54.7
26 TraesCS3D01G209800 chr4A 100.000 28 0 0 3919 3946 680052131 680052104 8.000000e-03 52.8
27 TraesCS3D01G209800 chr4A 100.000 28 0 0 3667 3694 743700511 743700538 8.000000e-03 52.8
28 TraesCS3D01G209800 chr1B 80.224 268 24 16 540 797 52491202 52490954 1.600000e-39 174.0
29 TraesCS3D01G209800 chr1B 100.000 35 0 0 367 401 52491300 52491266 1.010000e-06 65.8
30 TraesCS3D01G209800 chr1A 80.603 232 21 14 542 768 569343243 569343455 1.610000e-34 158.0
31 TraesCS3D01G209800 chr1A 100.000 35 0 0 367 401 569343146 569343180 1.010000e-06 65.8
32 TraesCS3D01G209800 chr5B 93.814 97 6 0 4087 4183 219059000 219059096 3.490000e-31 147.0
33 TraesCS3D01G209800 chr5B 90.909 99 6 3 4077 4174 697306288 697306384 3.520000e-26 130.0
34 TraesCS3D01G209800 chr5B 73.004 263 45 18 3719 3959 602846511 602846769 7.780000e-08 69.4
35 TraesCS3D01G209800 chr6A 83.226 155 24 2 3732 3885 209783877 209784030 1.630000e-29 141.0
36 TraesCS3D01G209800 chr6A 90.625 96 9 0 4088 4183 595186580 595186675 1.270000e-25 128.0
37 TraesCS3D01G209800 chr7D 91.000 100 8 1 4084 4183 160146394 160146296 2.720000e-27 134.0
38 TraesCS3D01G209800 chr7D 90.722 97 9 0 4087 4183 51778407 51778311 3.520000e-26 130.0
39 TraesCS3D01G209800 chr7D 96.875 32 0 1 3668 3699 421141262 421141232 8.000000e-03 52.8
40 TraesCS3D01G209800 chr2D 90.000 100 10 0 4084 4183 140241175 140241274 3.520000e-26 130.0
41 TraesCS3D01G209800 chr2D 97.143 35 1 0 367 401 614808168 614808202 4.680000e-05 60.2
42 TraesCS3D01G209800 chr5A 82.119 151 23 3 3713 3859 705141299 705141149 4.550000e-25 126.0
43 TraesCS3D01G209800 chr2A 78.125 192 38 2 3713 3900 753950883 753951074 7.620000e-23 119.0
44 TraesCS3D01G209800 chr2A 97.059 34 0 1 3917 3949 229987647 229987680 6.060000e-04 56.5
45 TraesCS3D01G209800 chr7B 92.105 38 1 1 3654 3689 84392706 84392743 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G209800 chr3D 277220768 277225102 4334 False 8006.00 8006 100.000000 1 4335 1 chr3D.!!$F2 4334
1 TraesCS3D01G209800 chr3B 372893808 372897903 4095 True 2940.75 5801 91.481000 1 4333 2 chr3B.!!$R3 4332
2 TraesCS3D01G209800 chr3A 362199350 362203504 4154 True 1815.00 4782 91.630667 1 4329 3 chr3A.!!$R3 4328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1070 0.040204 AGGCCTGAATCAAACCCCTG 59.960 55.0 3.11 0.0 0.00 4.45 F
2135 2256 0.534412 CAGCTCGTGTGGAAGGAGAT 59.466 55.0 0.00 0.0 42.34 2.75 F
2683 2847 0.673644 CGTTCCAGGACCACCATCAC 60.674 60.0 0.00 0.0 38.94 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2682 2846 0.034767 CTGCATGACCTGGTGATGGT 60.035 55.0 24.5 0.00 41.07 3.55 R
3221 3391 0.104671 GCCATGTTGGTGTTGTTGCT 59.895 50.0 0.0 0.00 40.46 3.91 R
4149 4396 0.033011 AGAGACCGGGTGTATGCTCT 60.033 55.0 3.3 6.98 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 232 6.542005 AGGGTTGCCTTCTGTTTTTATTTTTG 59.458 34.615 0.00 0.00 0.00 2.44
222 233 6.317642 GGGTTGCCTTCTGTTTTTATTTTTGT 59.682 34.615 0.00 0.00 0.00 2.83
223 234 7.148154 GGGTTGCCTTCTGTTTTTATTTTTGTT 60.148 33.333 0.00 0.00 0.00 2.83
224 235 8.240682 GGTTGCCTTCTGTTTTTATTTTTGTTT 58.759 29.630 0.00 0.00 0.00 2.83
225 236 9.619316 GTTGCCTTCTGTTTTTATTTTTGTTTT 57.381 25.926 0.00 0.00 0.00 2.43
302 350 4.292186 AGAAGGCTCAACTGCTGATTTA 57.708 40.909 0.00 0.00 32.14 1.40
502 563 1.045911 AGCTCCTGATCTCCGTTCCC 61.046 60.000 0.00 0.00 0.00 3.97
503 564 2.034048 GCTCCTGATCTCCGTTCCCC 62.034 65.000 0.00 0.00 0.00 4.81
504 565 1.382695 TCCTGATCTCCGTTCCCCC 60.383 63.158 0.00 0.00 0.00 5.40
505 566 1.689233 CCTGATCTCCGTTCCCCCA 60.689 63.158 0.00 0.00 0.00 4.96
506 567 1.522569 CTGATCTCCGTTCCCCCAC 59.477 63.158 0.00 0.00 0.00 4.61
507 568 1.972660 CTGATCTCCGTTCCCCCACC 61.973 65.000 0.00 0.00 0.00 4.61
508 569 1.689582 GATCTCCGTTCCCCCACCT 60.690 63.158 0.00 0.00 0.00 4.00
509 570 1.687297 GATCTCCGTTCCCCCACCTC 61.687 65.000 0.00 0.00 0.00 3.85
510 571 2.182858 ATCTCCGTTCCCCCACCTCT 62.183 60.000 0.00 0.00 0.00 3.69
511 572 2.284405 TCCGTTCCCCCACCTCTC 60.284 66.667 0.00 0.00 0.00 3.20
512 573 2.284699 CCGTTCCCCCACCTCTCT 60.285 66.667 0.00 0.00 0.00 3.10
513 574 2.359967 CCGTTCCCCCACCTCTCTC 61.360 68.421 0.00 0.00 0.00 3.20
514 575 1.305381 CGTTCCCCCACCTCTCTCT 60.305 63.158 0.00 0.00 0.00 3.10
515 576 1.324005 CGTTCCCCCACCTCTCTCTC 61.324 65.000 0.00 0.00 0.00 3.20
516 577 0.041982 GTTCCCCCACCTCTCTCTCT 59.958 60.000 0.00 0.00 0.00 3.10
517 578 0.336737 TTCCCCCACCTCTCTCTCTC 59.663 60.000 0.00 0.00 0.00 3.20
518 579 0.553862 TCCCCCACCTCTCTCTCTCT 60.554 60.000 0.00 0.00 0.00 3.10
519 580 0.106217 CCCCCACCTCTCTCTCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
520 581 0.926293 CCCCACCTCTCTCTCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
521 582 1.133792 CCCCACCTCTCTCTCTCTCTC 60.134 61.905 0.00 0.00 0.00 3.20
522 583 1.846439 CCCACCTCTCTCTCTCTCTCT 59.154 57.143 0.00 0.00 0.00 3.10
523 584 2.158755 CCCACCTCTCTCTCTCTCTCTC 60.159 59.091 0.00 0.00 0.00 3.20
524 585 2.774234 CCACCTCTCTCTCTCTCTCTCT 59.226 54.545 0.00 0.00 0.00 3.10
525 586 3.181461 CCACCTCTCTCTCTCTCTCTCTC 60.181 56.522 0.00 0.00 0.00 3.20
526 587 3.708631 CACCTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
527 588 3.964031 ACCTCTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
528 589 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
529 590 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
530 591 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
531 592 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
532 593 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
533 594 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
547 608 4.078922 TCTCTCTCTCTCTCTCTCTCTCCT 60.079 50.000 0.00 0.00 0.00 3.69
635 697 7.817478 GGGAAAGAAAGTAGAGAGAGAAAGAAG 59.183 40.741 0.00 0.00 0.00 2.85
636 698 8.581578 GGAAAGAAAGTAGAGAGAGAAAGAAGA 58.418 37.037 0.00 0.00 0.00 2.87
637 699 9.974980 GAAAGAAAGTAGAGAGAGAAAGAAGAA 57.025 33.333 0.00 0.00 0.00 2.52
906 991 4.081309 AGCAGCATCAAATTTATTGCCACT 60.081 37.500 16.67 12.79 35.71 4.00
978 1070 0.040204 AGGCCTGAATCAAACCCCTG 59.960 55.000 3.11 0.00 0.00 4.45
1215 1313 5.525199 TCCTCGGTTTAATTTCTTGTTTGC 58.475 37.500 0.00 0.00 0.00 3.68
1229 1327 5.431765 TCTTGTTTGCTTTCTCTCAAGTCT 58.568 37.500 0.00 0.00 35.35 3.24
1236 1334 4.100035 TGCTTTCTCTCAAGTCTCAAGTCA 59.900 41.667 0.00 0.00 0.00 3.41
1252 1350 1.009389 GTCAAGCGAGGACGAGTTGG 61.009 60.000 0.00 0.00 42.66 3.77
1281 1379 2.207590 ACTGATGCGCATGTCTGTATG 58.792 47.619 30.76 10.33 0.00 2.39
1533 1631 0.981183 TGGTGCGGAAGAAGGTGTAT 59.019 50.000 0.00 0.00 0.00 2.29
1762 1860 4.159879 TCTTCTCCAGGTTCTTATCCGTTC 59.840 45.833 0.00 0.00 0.00 3.95
1792 1890 2.690497 CTCGATCCACCTCTTCTGCTTA 59.310 50.000 0.00 0.00 0.00 3.09
1796 1894 4.559704 CGATCCACCTCTTCTGCTTATACC 60.560 50.000 0.00 0.00 0.00 2.73
1940 2051 3.375699 AGAGGATCGTGAACATTAGGGT 58.624 45.455 0.00 0.00 42.67 4.34
1941 2052 4.543689 AGAGGATCGTGAACATTAGGGTA 58.456 43.478 0.00 0.00 42.67 3.69
1942 2053 4.585162 AGAGGATCGTGAACATTAGGGTAG 59.415 45.833 0.00 0.00 42.67 3.18
1943 2054 3.641906 AGGATCGTGAACATTAGGGTAGG 59.358 47.826 0.00 0.00 0.00 3.18
1944 2055 3.244112 GGATCGTGAACATTAGGGTAGGG 60.244 52.174 0.00 0.00 0.00 3.53
1945 2056 1.483415 TCGTGAACATTAGGGTAGGGC 59.517 52.381 0.00 0.00 0.00 5.19
1946 2057 1.485066 CGTGAACATTAGGGTAGGGCT 59.515 52.381 0.00 0.00 0.00 5.19
1947 2058 2.483188 CGTGAACATTAGGGTAGGGCTC 60.483 54.545 0.00 0.00 0.00 4.70
1948 2059 2.504175 GTGAACATTAGGGTAGGGCTCA 59.496 50.000 0.00 0.00 0.00 4.26
1972 2083 8.263640 TCAATTAATCTGAGAGAAGGAAGGAAG 58.736 37.037 0.00 0.00 0.00 3.46
2104 2225 1.303309 GTTTCGGCCATGGATGAGAG 58.697 55.000 18.40 0.00 0.00 3.20
2131 2252 2.031012 TGCAGCTCGTGTGGAAGG 59.969 61.111 0.00 0.00 0.00 3.46
2132 2253 2.343758 GCAGCTCGTGTGGAAGGA 59.656 61.111 0.00 0.00 0.00 3.36
2133 2254 1.739562 GCAGCTCGTGTGGAAGGAG 60.740 63.158 0.00 0.00 42.57 3.69
2134 2255 1.967535 CAGCTCGTGTGGAAGGAGA 59.032 57.895 0.00 0.00 42.34 3.71
2135 2256 0.534412 CAGCTCGTGTGGAAGGAGAT 59.466 55.000 0.00 0.00 42.34 2.75
2319 2449 2.589664 TCCTCTCCTCCCTGATTCTCTT 59.410 50.000 0.00 0.00 0.00 2.85
2443 2598 2.376109 CCTTCCTTCTCATGCTGCATT 58.624 47.619 13.38 0.00 0.00 3.56
2444 2599 2.758979 CCTTCCTTCTCATGCTGCATTT 59.241 45.455 13.38 0.00 0.00 2.32
2445 2600 3.181489 CCTTCCTTCTCATGCTGCATTTC 60.181 47.826 13.38 0.00 0.00 2.17
2446 2601 3.361281 TCCTTCTCATGCTGCATTTCT 57.639 42.857 13.38 0.00 0.00 2.52
2462 2617 5.713389 TGCATTTCTTTCTTCTGATGATGGT 59.287 36.000 0.00 0.00 0.00 3.55
2679 2843 4.308458 CGCGTTCCAGGACCACCA 62.308 66.667 0.00 0.00 38.94 4.17
2680 2844 2.351276 GCGTTCCAGGACCACCAT 59.649 61.111 0.00 0.00 38.94 3.55
2681 2845 1.745489 GCGTTCCAGGACCACCATC 60.745 63.158 0.00 0.00 38.94 3.51
2682 2846 1.676968 CGTTCCAGGACCACCATCA 59.323 57.895 0.00 0.00 38.94 3.07
2683 2847 0.673644 CGTTCCAGGACCACCATCAC 60.674 60.000 0.00 0.00 38.94 3.06
3277 3447 2.949106 CAACAAGGACAGCCGCAG 59.051 61.111 0.00 0.00 39.96 5.18
3278 3448 2.980233 AACAAGGACAGCCGCAGC 60.980 61.111 0.00 0.00 39.96 5.25
3363 3545 2.212652 GATGATAGTTGCATGGTCGCA 58.787 47.619 0.00 0.00 41.03 5.10
3402 3584 0.537188 TGCTTGCTGCTACCCTCTAC 59.463 55.000 0.00 0.00 43.37 2.59
3442 3629 5.422214 TTTGAACTGGGTAATCTCTCTCC 57.578 43.478 0.00 0.00 0.00 3.71
3445 3632 4.017037 TGAACTGGGTAATCTCTCTCCTCT 60.017 45.833 0.00 0.00 0.00 3.69
3446 3633 4.178956 ACTGGGTAATCTCTCTCCTCTC 57.821 50.000 0.00 0.00 0.00 3.20
3447 3634 3.791545 ACTGGGTAATCTCTCTCCTCTCT 59.208 47.826 0.00 0.00 0.00 3.10
3448 3635 4.141251 ACTGGGTAATCTCTCTCCTCTCTC 60.141 50.000 0.00 0.00 0.00 3.20
3449 3636 4.051478 TGGGTAATCTCTCTCCTCTCTCT 58.949 47.826 0.00 0.00 0.00 3.10
3450 3637 4.104102 TGGGTAATCTCTCTCCTCTCTCTC 59.896 50.000 0.00 0.00 0.00 3.20
3451 3638 4.506802 GGGTAATCTCTCTCCTCTCTCTCC 60.507 54.167 0.00 0.00 0.00 3.71
3452 3639 3.492102 AATCTCTCTCCTCTCTCTCCG 57.508 52.381 0.00 0.00 0.00 4.63
3483 3694 5.134202 TCTCGTGATCTTGCAAGTTAAGA 57.866 39.130 25.19 17.35 38.42 2.10
3581 3818 1.066858 ACATGCATCCGTCGTCTCTTT 60.067 47.619 0.00 0.00 0.00 2.52
3582 3819 2.002586 CATGCATCCGTCGTCTCTTTT 58.997 47.619 0.00 0.00 0.00 2.27
3704 3948 6.471233 TTTTGAGACAGAGAGAAGACAAGA 57.529 37.500 0.00 0.00 0.00 3.02
3705 3949 6.471233 TTTGAGACAGAGAGAAGACAAGAA 57.529 37.500 0.00 0.00 0.00 2.52
3706 3950 5.703978 TGAGACAGAGAGAAGACAAGAAG 57.296 43.478 0.00 0.00 0.00 2.85
3735 3979 4.141088 ACTCCCTCCGTTCCATATGTAGTA 60.141 45.833 1.24 0.00 0.00 1.82
3992 4238 8.512138 GCCACACACTACAAGTTTTATATTCTT 58.488 33.333 0.00 0.00 0.00 2.52
4023 4270 6.323739 TGGGCAAAACAAAGTTTCTCTATCTT 59.676 34.615 0.00 0.00 0.00 2.40
4042 4289 9.182214 TCTATCTTACTAAGGTACACGTTGATT 57.818 33.333 0.00 0.00 0.00 2.57
4055 4302 9.865321 GGTACACGTTGATTGGTATATGTATAT 57.135 33.333 0.00 0.00 0.00 0.86
4079 4326 4.324267 GAAAATCCAGATATACACCCCCG 58.676 47.826 0.00 0.00 0.00 5.73
4084 4331 4.495565 TCCAGATATACACCCCCGTTTAT 58.504 43.478 0.00 0.00 0.00 1.40
4085 4332 5.653346 TCCAGATATACACCCCCGTTTATA 58.347 41.667 0.00 0.00 0.00 0.98
4086 4333 5.481473 TCCAGATATACACCCCCGTTTATAC 59.519 44.000 0.00 0.00 0.00 1.47
4087 4334 5.482878 CCAGATATACACCCCCGTTTATACT 59.517 44.000 0.00 0.00 0.00 2.12
4088 4335 6.013984 CCAGATATACACCCCCGTTTATACTT 60.014 42.308 0.00 0.00 0.00 2.24
4089 4336 7.447594 CAGATATACACCCCCGTTTATACTTT 58.552 38.462 0.00 0.00 0.00 2.66
4090 4337 7.935210 CAGATATACACCCCCGTTTATACTTTT 59.065 37.037 0.00 0.00 0.00 2.27
4091 4338 8.496916 AGATATACACCCCCGTTTATACTTTTT 58.503 33.333 0.00 0.00 0.00 1.94
4092 4339 8.681486 ATATACACCCCCGTTTATACTTTTTC 57.319 34.615 0.00 0.00 0.00 2.29
4093 4340 3.752747 ACACCCCCGTTTATACTTTTTCG 59.247 43.478 0.00 0.00 0.00 3.46
4094 4341 4.002316 CACCCCCGTTTATACTTTTTCGA 58.998 43.478 0.00 0.00 0.00 3.71
4095 4342 4.637091 CACCCCCGTTTATACTTTTTCGAT 59.363 41.667 0.00 0.00 0.00 3.59
4096 4343 5.816777 CACCCCCGTTTATACTTTTTCGATA 59.183 40.000 0.00 0.00 0.00 2.92
4097 4344 6.315891 CACCCCCGTTTATACTTTTTCGATAA 59.684 38.462 0.00 0.00 0.00 1.75
4098 4345 6.883756 ACCCCCGTTTATACTTTTTCGATAAA 59.116 34.615 1.08 1.08 0.00 1.40
4099 4346 7.148255 ACCCCCGTTTATACTTTTTCGATAAAC 60.148 37.037 0.00 1.87 40.35 2.01
4104 4351 8.591698 GTTTATACTTTTTCGATAAACGGTGG 57.408 34.615 0.00 0.00 42.82 4.61
4105 4352 8.442384 GTTTATACTTTTTCGATAAACGGTGGA 58.558 33.333 0.00 0.00 42.82 4.02
4106 4353 8.721019 TTATACTTTTTCGATAAACGGTGGAT 57.279 30.769 0.00 0.00 42.82 3.41
4107 4354 5.952526 ACTTTTTCGATAAACGGTGGATT 57.047 34.783 0.00 0.00 42.82 3.01
4108 4355 6.321848 ACTTTTTCGATAAACGGTGGATTT 57.678 33.333 0.00 0.00 42.82 2.17
4109 4356 6.741109 ACTTTTTCGATAAACGGTGGATTTT 58.259 32.000 0.00 0.00 42.82 1.82
4110 4357 7.873910 ACTTTTTCGATAAACGGTGGATTTTA 58.126 30.769 0.00 0.00 42.82 1.52
4111 4358 8.517056 ACTTTTTCGATAAACGGTGGATTTTAT 58.483 29.630 0.00 0.00 42.82 1.40
4112 4359 9.349145 CTTTTTCGATAAACGGTGGATTTTATT 57.651 29.630 0.00 0.00 42.82 1.40
4113 4360 8.676454 TTTTCGATAAACGGTGGATTTTATTG 57.324 30.769 0.00 0.00 42.82 1.90
4114 4361 6.366315 TCGATAAACGGTGGATTTTATTGG 57.634 37.500 0.00 0.00 42.82 3.16
4115 4362 4.973663 CGATAAACGGTGGATTTTATTGGC 59.026 41.667 0.00 0.00 38.46 4.52
4116 4363 5.220970 CGATAAACGGTGGATTTTATTGGCT 60.221 40.000 0.00 0.00 38.46 4.75
4117 4364 4.882842 AAACGGTGGATTTTATTGGCTT 57.117 36.364 0.00 0.00 0.00 4.35
4118 4365 5.986501 AAACGGTGGATTTTATTGGCTTA 57.013 34.783 0.00 0.00 0.00 3.09
4119 4366 5.986501 AACGGTGGATTTTATTGGCTTAA 57.013 34.783 0.00 0.00 0.00 1.85
4120 4367 5.986501 ACGGTGGATTTTATTGGCTTAAA 57.013 34.783 0.00 0.00 0.00 1.52
4121 4368 6.347859 ACGGTGGATTTTATTGGCTTAAAA 57.652 33.333 7.90 7.90 35.98 1.52
4122 4369 6.941857 ACGGTGGATTTTATTGGCTTAAAAT 58.058 32.000 14.43 14.43 41.92 1.82
4123 4370 6.816140 ACGGTGGATTTTATTGGCTTAAAATG 59.184 34.615 17.52 9.41 40.25 2.32
4124 4371 6.257630 CGGTGGATTTTATTGGCTTAAAATGG 59.742 38.462 17.52 4.74 40.25 3.16
4125 4372 7.334858 GGTGGATTTTATTGGCTTAAAATGGA 58.665 34.615 17.52 6.59 40.25 3.41
4126 4373 7.495606 GGTGGATTTTATTGGCTTAAAATGGAG 59.504 37.037 17.52 0.00 40.25 3.86
4127 4374 7.011389 GTGGATTTTATTGGCTTAAAATGGAGC 59.989 37.037 17.52 7.96 40.25 4.70
4128 4375 7.047271 GGATTTTATTGGCTTAAAATGGAGCA 58.953 34.615 17.52 0.00 40.25 4.26
4129 4376 7.716560 GGATTTTATTGGCTTAAAATGGAGCAT 59.283 33.333 17.52 0.77 40.25 3.79
4130 4377 8.667076 ATTTTATTGGCTTAAAATGGAGCATC 57.333 30.769 14.01 0.00 39.26 3.91
4131 4378 6.788598 TTATTGGCTTAAAATGGAGCATCA 57.211 33.333 0.00 0.00 40.63 3.07
4132 4379 5.680594 ATTGGCTTAAAATGGAGCATCAA 57.319 34.783 0.00 0.00 40.63 2.57
4133 4380 4.724074 TGGCTTAAAATGGAGCATCAAG 57.276 40.909 0.00 0.00 40.63 3.02
4134 4381 4.343231 TGGCTTAAAATGGAGCATCAAGA 58.657 39.130 0.00 0.00 40.63 3.02
4135 4382 4.400251 TGGCTTAAAATGGAGCATCAAGAG 59.600 41.667 0.00 0.00 40.63 2.85
4136 4383 4.202090 GGCTTAAAATGGAGCATCAAGAGG 60.202 45.833 0.00 0.00 40.63 3.69
4137 4384 4.641989 GCTTAAAATGGAGCATCAAGAGGA 59.358 41.667 0.00 0.00 38.73 3.71
4138 4385 5.301298 GCTTAAAATGGAGCATCAAGAGGAT 59.699 40.000 0.00 0.00 38.73 3.24
4139 4386 6.488006 GCTTAAAATGGAGCATCAAGAGGATA 59.512 38.462 0.00 0.00 38.73 2.59
4140 4387 7.521261 GCTTAAAATGGAGCATCAAGAGGATAC 60.521 40.741 0.00 0.00 38.73 2.24
4141 4388 5.378230 AAATGGAGCATCAAGAGGATACA 57.622 39.130 0.00 0.00 36.25 2.29
4142 4389 5.378230 AATGGAGCATCAAGAGGATACAA 57.622 39.130 0.00 0.00 36.25 2.41
4143 4390 4.842531 TGGAGCATCAAGAGGATACAAA 57.157 40.909 0.00 0.00 36.25 2.83
4144 4391 4.517285 TGGAGCATCAAGAGGATACAAAC 58.483 43.478 0.00 0.00 36.25 2.93
4145 4392 4.019411 TGGAGCATCAAGAGGATACAAACA 60.019 41.667 0.00 0.00 36.25 2.83
4146 4393 4.333926 GGAGCATCAAGAGGATACAAACAC 59.666 45.833 0.00 0.00 36.25 3.32
4147 4394 4.910195 AGCATCAAGAGGATACAAACACA 58.090 39.130 0.00 0.00 41.41 3.72
4148 4395 5.316167 AGCATCAAGAGGATACAAACACAA 58.684 37.500 0.00 0.00 41.41 3.33
4149 4396 5.769662 AGCATCAAGAGGATACAAACACAAA 59.230 36.000 0.00 0.00 41.41 2.83
4150 4397 6.072286 AGCATCAAGAGGATACAAACACAAAG 60.072 38.462 0.00 0.00 41.41 2.77
4151 4398 6.072508 GCATCAAGAGGATACAAACACAAAGA 60.073 38.462 0.00 0.00 41.41 2.52
4152 4399 7.524912 CATCAAGAGGATACAAACACAAAGAG 58.475 38.462 0.00 0.00 41.41 2.85
4153 4400 5.470098 TCAAGAGGATACAAACACAAAGAGC 59.530 40.000 0.00 0.00 41.41 4.09
4154 4401 4.973168 AGAGGATACAAACACAAAGAGCA 58.027 39.130 0.00 0.00 41.41 4.26
4155 4402 5.564550 AGAGGATACAAACACAAAGAGCAT 58.435 37.500 0.00 0.00 41.41 3.79
4156 4403 6.711277 AGAGGATACAAACACAAAGAGCATA 58.289 36.000 0.00 0.00 41.41 3.14
4157 4404 6.595716 AGAGGATACAAACACAAAGAGCATAC 59.404 38.462 0.00 0.00 41.41 2.39
4158 4405 6.237901 AGGATACAAACACAAAGAGCATACA 58.762 36.000 0.00 0.00 41.41 2.29
4159 4406 6.149474 AGGATACAAACACAAAGAGCATACAC 59.851 38.462 0.00 0.00 41.41 2.90
4160 4407 4.568152 ACAAACACAAAGAGCATACACC 57.432 40.909 0.00 0.00 0.00 4.16
4161 4408 3.317993 ACAAACACAAAGAGCATACACCC 59.682 43.478 0.00 0.00 0.00 4.61
4162 4409 1.808411 ACACAAAGAGCATACACCCG 58.192 50.000 0.00 0.00 0.00 5.28
4163 4410 1.086696 CACAAAGAGCATACACCCGG 58.913 55.000 0.00 0.00 0.00 5.73
4164 4411 0.690762 ACAAAGAGCATACACCCGGT 59.309 50.000 0.00 0.00 0.00 5.28
4165 4412 1.338769 ACAAAGAGCATACACCCGGTC 60.339 52.381 0.00 0.00 0.00 4.79
4166 4413 1.066143 CAAAGAGCATACACCCGGTCT 60.066 52.381 0.00 0.00 41.56 3.85
4167 4414 0.824759 AAGAGCATACACCCGGTCTC 59.175 55.000 0.00 0.00 38.98 3.36
4168 4415 0.033011 AGAGCATACACCCGGTCTCT 60.033 55.000 0.00 0.79 35.07 3.10
4169 4416 0.103208 GAGCATACACCCGGTCTCTG 59.897 60.000 0.00 0.00 0.00 3.35
4170 4417 1.521681 GCATACACCCGGTCTCTGC 60.522 63.158 0.00 0.00 0.00 4.26
4171 4418 1.897423 CATACACCCGGTCTCTGCA 59.103 57.895 0.00 0.00 0.00 4.41
4172 4419 0.465705 CATACACCCGGTCTCTGCAT 59.534 55.000 0.00 0.00 0.00 3.96
4173 4420 1.686587 CATACACCCGGTCTCTGCATA 59.313 52.381 0.00 0.00 0.00 3.14
4174 4421 1.399714 TACACCCGGTCTCTGCATAG 58.600 55.000 0.00 0.00 0.00 2.23
4175 4422 0.614979 ACACCCGGTCTCTGCATAGT 60.615 55.000 0.00 0.00 0.00 2.12
4176 4423 0.537188 CACCCGGTCTCTGCATAGTT 59.463 55.000 0.00 0.00 0.00 2.24
4177 4424 1.754803 CACCCGGTCTCTGCATAGTTA 59.245 52.381 0.00 0.00 0.00 2.24
4178 4425 2.167693 CACCCGGTCTCTGCATAGTTAA 59.832 50.000 0.00 0.00 0.00 2.01
4179 4426 2.431057 ACCCGGTCTCTGCATAGTTAAG 59.569 50.000 0.00 0.00 0.00 1.85
4180 4427 2.693591 CCCGGTCTCTGCATAGTTAAGA 59.306 50.000 0.00 0.00 0.00 2.10
4181 4428 3.322254 CCCGGTCTCTGCATAGTTAAGAT 59.678 47.826 0.00 0.00 0.00 2.40
4182 4429 4.302455 CCGGTCTCTGCATAGTTAAGATG 58.698 47.826 0.00 0.00 0.00 2.90
4183 4430 4.038042 CCGGTCTCTGCATAGTTAAGATGA 59.962 45.833 0.00 0.00 0.00 2.92
4184 4431 5.218885 CGGTCTCTGCATAGTTAAGATGAG 58.781 45.833 0.00 0.00 0.00 2.90
4185 4432 5.009110 CGGTCTCTGCATAGTTAAGATGAGA 59.991 44.000 0.00 0.00 0.00 3.27
4186 4433 6.294453 CGGTCTCTGCATAGTTAAGATGAGAT 60.294 42.308 0.00 0.00 32.94 2.75
4187 4434 7.090173 GGTCTCTGCATAGTTAAGATGAGATC 58.910 42.308 0.00 0.00 32.94 2.75
4188 4435 7.090173 GTCTCTGCATAGTTAAGATGAGATCC 58.910 42.308 0.00 0.00 32.94 3.36
4189 4436 6.018589 TCTGCATAGTTAAGATGAGATCCG 57.981 41.667 0.00 0.00 0.00 4.18
4190 4437 5.536538 TCTGCATAGTTAAGATGAGATCCGT 59.463 40.000 0.00 0.00 0.00 4.69
4191 4438 5.532557 TGCATAGTTAAGATGAGATCCGTG 58.467 41.667 2.15 0.00 0.00 4.94
4192 4439 5.301805 TGCATAGTTAAGATGAGATCCGTGA 59.698 40.000 2.15 0.00 0.00 4.35
4193 4440 6.015095 TGCATAGTTAAGATGAGATCCGTGAT 60.015 38.462 2.15 0.00 0.00 3.06
4194 4441 6.309980 GCATAGTTAAGATGAGATCCGTGATG 59.690 42.308 2.15 0.00 0.00 3.07
4195 4442 5.207110 AGTTAAGATGAGATCCGTGATGG 57.793 43.478 0.00 0.00 40.09 3.51
4196 4443 4.039730 AGTTAAGATGAGATCCGTGATGGG 59.960 45.833 0.00 0.00 38.76 4.00
4197 4444 0.683973 AGATGAGATCCGTGATGGGC 59.316 55.000 0.00 0.00 38.76 5.36
4198 4445 0.394192 GATGAGATCCGTGATGGGCA 59.606 55.000 0.00 0.00 38.76 5.36
4199 4446 0.839277 ATGAGATCCGTGATGGGCAA 59.161 50.000 0.00 0.00 38.76 4.52
4200 4447 0.617935 TGAGATCCGTGATGGGCAAA 59.382 50.000 0.00 0.00 38.76 3.68
4201 4448 1.017387 GAGATCCGTGATGGGCAAAC 58.983 55.000 0.00 0.00 38.76 2.93
4202 4449 0.327924 AGATCCGTGATGGGCAAACA 59.672 50.000 0.00 0.00 38.76 2.83
4203 4450 1.173043 GATCCGTGATGGGCAAACAA 58.827 50.000 0.00 0.00 38.76 2.83
4204 4451 0.887933 ATCCGTGATGGGCAAACAAC 59.112 50.000 0.00 0.00 38.76 3.32
4205 4452 0.466372 TCCGTGATGGGCAAACAACA 60.466 50.000 0.00 0.00 38.76 3.33
4206 4453 0.387202 CCGTGATGGGCAAACAACAA 59.613 50.000 0.00 0.00 0.00 2.83
4207 4454 1.486439 CGTGATGGGCAAACAACAAC 58.514 50.000 0.00 0.00 0.00 3.32
4208 4455 1.202348 CGTGATGGGCAAACAACAACA 60.202 47.619 0.00 0.00 0.00 3.33
4209 4456 2.736719 CGTGATGGGCAAACAACAACAA 60.737 45.455 0.00 0.00 0.00 2.83
4210 4457 3.465871 GTGATGGGCAAACAACAACAAT 58.534 40.909 0.00 0.00 0.00 2.71
4211 4458 3.248125 GTGATGGGCAAACAACAACAATG 59.752 43.478 0.00 0.00 0.00 2.82
4212 4459 3.133542 TGATGGGCAAACAACAACAATGA 59.866 39.130 0.00 0.00 0.00 2.57
4213 4460 2.898705 TGGGCAAACAACAACAATGAC 58.101 42.857 0.00 0.00 0.00 3.06
4214 4461 2.234661 TGGGCAAACAACAACAATGACA 59.765 40.909 0.00 0.00 0.00 3.58
4215 4462 3.265791 GGGCAAACAACAACAATGACAA 58.734 40.909 0.00 0.00 0.00 3.18
4216 4463 3.876320 GGGCAAACAACAACAATGACAAT 59.124 39.130 0.00 0.00 0.00 2.71
4217 4464 5.053145 GGGCAAACAACAACAATGACAATA 58.947 37.500 0.00 0.00 0.00 1.90
4218 4465 5.700373 GGGCAAACAACAACAATGACAATAT 59.300 36.000 0.00 0.00 0.00 1.28
4219 4466 6.128580 GGGCAAACAACAACAATGACAATATC 60.129 38.462 0.00 0.00 0.00 1.63
4220 4467 6.128580 GGCAAACAACAACAATGACAATATCC 60.129 38.462 0.00 0.00 0.00 2.59
4221 4468 6.128580 GCAAACAACAACAATGACAATATCCC 60.129 38.462 0.00 0.00 0.00 3.85
4222 4469 5.659440 ACAACAACAATGACAATATCCCC 57.341 39.130 0.00 0.00 0.00 4.81
4223 4470 5.083122 ACAACAACAATGACAATATCCCCA 58.917 37.500 0.00 0.00 0.00 4.96
4224 4471 5.047377 ACAACAACAATGACAATATCCCCAC 60.047 40.000 0.00 0.00 0.00 4.61
4225 4472 4.023291 ACAACAATGACAATATCCCCACC 58.977 43.478 0.00 0.00 0.00 4.61
4226 4473 4.022603 CAACAATGACAATATCCCCACCA 58.977 43.478 0.00 0.00 0.00 4.17
4227 4474 3.902218 ACAATGACAATATCCCCACCAG 58.098 45.455 0.00 0.00 0.00 4.00
4228 4475 2.624838 CAATGACAATATCCCCACCAGC 59.375 50.000 0.00 0.00 0.00 4.85
4229 4476 1.294041 TGACAATATCCCCACCAGCA 58.706 50.000 0.00 0.00 0.00 4.41
4230 4477 1.852309 TGACAATATCCCCACCAGCAT 59.148 47.619 0.00 0.00 0.00 3.79
4231 4478 3.052329 TGACAATATCCCCACCAGCATA 58.948 45.455 0.00 0.00 0.00 3.14
4232 4479 3.657239 TGACAATATCCCCACCAGCATAT 59.343 43.478 0.00 0.00 0.00 1.78
4233 4480 4.263462 TGACAATATCCCCACCAGCATATC 60.263 45.833 0.00 0.00 0.00 1.63
4234 4481 3.657239 ACAATATCCCCACCAGCATATCA 59.343 43.478 0.00 0.00 0.00 2.15
4235 4482 4.293102 ACAATATCCCCACCAGCATATCAT 59.707 41.667 0.00 0.00 0.00 2.45
4236 4483 2.893215 ATCCCCACCAGCATATCATG 57.107 50.000 0.00 0.00 0.00 3.07
4237 4484 1.818419 TCCCCACCAGCATATCATGA 58.182 50.000 0.00 0.00 0.00 3.07
4238 4485 1.421268 TCCCCACCAGCATATCATGAC 59.579 52.381 0.00 0.00 0.00 3.06
4239 4486 1.143481 CCCCACCAGCATATCATGACA 59.857 52.381 0.00 0.00 0.00 3.58
4240 4487 2.224606 CCCACCAGCATATCATGACAC 58.775 52.381 0.00 0.00 0.00 3.67
4241 4488 2.224606 CCACCAGCATATCATGACACC 58.775 52.381 0.00 0.00 0.00 4.16
4242 4489 2.421811 CCACCAGCATATCATGACACCA 60.422 50.000 0.00 0.00 0.00 4.17
4243 4490 2.615447 CACCAGCATATCATGACACCAC 59.385 50.000 0.00 0.00 0.00 4.16
4244 4491 2.239402 ACCAGCATATCATGACACCACA 59.761 45.455 0.00 0.00 0.00 4.17
4245 4492 2.615447 CCAGCATATCATGACACCACAC 59.385 50.000 0.00 0.00 0.00 3.82
4246 4493 3.272581 CAGCATATCATGACACCACACA 58.727 45.455 0.00 0.00 0.00 3.72
4247 4494 3.690628 CAGCATATCATGACACCACACAA 59.309 43.478 0.00 0.00 0.00 3.33
4248 4495 3.943381 AGCATATCATGACACCACACAAG 59.057 43.478 0.00 0.00 0.00 3.16
4249 4496 3.488047 GCATATCATGACACCACACAAGC 60.488 47.826 0.00 0.00 0.00 4.01
4250 4497 1.538047 ATCATGACACCACACAAGCC 58.462 50.000 0.00 0.00 0.00 4.35
4251 4498 0.182299 TCATGACACCACACAAGCCA 59.818 50.000 0.00 0.00 0.00 4.75
4252 4499 0.311790 CATGACACCACACAAGCCAC 59.688 55.000 0.00 0.00 0.00 5.01
4253 4500 1.165907 ATGACACCACACAAGCCACG 61.166 55.000 0.00 0.00 0.00 4.94
4254 4501 1.522806 GACACCACACAAGCCACGA 60.523 57.895 0.00 0.00 0.00 4.35
4255 4502 1.498865 GACACCACACAAGCCACGAG 61.499 60.000 0.00 0.00 0.00 4.18
4256 4503 2.111043 ACCACACAAGCCACGAGG 59.889 61.111 0.00 0.00 38.23 4.63
4257 4504 2.111043 CCACACAAGCCACGAGGT 59.889 61.111 0.00 0.00 37.19 3.85
4258 4505 1.525995 CCACACAAGCCACGAGGTT 60.526 57.895 0.00 0.00 37.19 3.50
4259 4506 1.507141 CCACACAAGCCACGAGGTTC 61.507 60.000 0.00 0.00 37.19 3.62
4260 4507 0.532862 CACACAAGCCACGAGGTTCT 60.533 55.000 0.00 0.00 37.19 3.01
4261 4508 0.180406 ACACAAGCCACGAGGTTCTT 59.820 50.000 0.00 0.00 37.19 2.52
4262 4509 0.868406 CACAAGCCACGAGGTTCTTC 59.132 55.000 0.00 0.00 37.19 2.87
4263 4510 0.468226 ACAAGCCACGAGGTTCTTCA 59.532 50.000 0.00 0.00 37.19 3.02
4264 4511 1.134220 ACAAGCCACGAGGTTCTTCAA 60.134 47.619 0.00 0.00 37.19 2.69
4265 4512 1.264288 CAAGCCACGAGGTTCTTCAAC 59.736 52.381 0.00 0.00 37.19 3.18
4266 4513 0.468226 AGCCACGAGGTTCTTCAACA 59.532 50.000 0.00 0.00 37.19 3.33
4267 4514 1.072331 AGCCACGAGGTTCTTCAACAT 59.928 47.619 0.00 0.00 37.19 2.71
4268 4515 1.880027 GCCACGAGGTTCTTCAACATT 59.120 47.619 0.00 0.00 37.19 2.71
4277 4524 7.496591 ACGAGGTTCTTCAACATTTACTAAACA 59.503 33.333 0.00 0.00 33.70 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.153229 GAACCATAGCGACACCCCC 60.153 63.158 0.00 0.00 0.00 5.40
72 73 0.743345 GTGAACCATAGCGACACCCC 60.743 60.000 0.00 0.00 0.00 4.95
73 74 0.036765 TGTGAACCATAGCGACACCC 60.037 55.000 0.00 0.00 0.00 4.61
74 75 1.803334 TTGTGAACCATAGCGACACC 58.197 50.000 0.00 0.00 0.00 4.16
75 76 2.742053 ACATTGTGAACCATAGCGACAC 59.258 45.455 0.00 0.00 0.00 3.67
76 77 3.052455 ACATTGTGAACCATAGCGACA 57.948 42.857 0.00 0.00 0.00 4.35
77 78 5.734855 ATAACATTGTGAACCATAGCGAC 57.265 39.130 0.00 0.00 0.00 5.19
78 79 8.145122 TGTATATAACATTGTGAACCATAGCGA 58.855 33.333 0.00 0.00 31.43 4.93
121 122 9.442047 GTACAGTAGTAGAAGTGGAAACTAGTA 57.558 37.037 0.00 0.00 0.00 1.82
122 123 8.162746 AGTACAGTAGTAGAAGTGGAAACTAGT 58.837 37.037 0.00 0.00 0.00 2.57
123 124 8.564509 AGTACAGTAGTAGAAGTGGAAACTAG 57.435 38.462 0.00 0.00 0.00 2.57
198 203 7.315247 ACAAAAATAAAAACAGAAGGCAACC 57.685 32.000 0.00 0.00 37.17 3.77
302 350 5.604565 CCAAAAAGAAGCAAAATCCTGACT 58.395 37.500 0.00 0.00 0.00 3.41
310 358 1.843206 AGGGGCCAAAAAGAAGCAAAA 59.157 42.857 4.39 0.00 0.00 2.44
314 362 2.612972 GCTTTAGGGGCCAAAAAGAAGC 60.613 50.000 25.52 17.59 33.05 3.86
439 500 2.310052 CCCCATGAGAGAGAAAAAGGGT 59.690 50.000 0.00 0.00 33.14 4.34
502 563 1.846439 AGAGAGAGAGAGAGAGGTGGG 59.154 57.143 0.00 0.00 0.00 4.61
503 564 2.774234 AGAGAGAGAGAGAGAGAGGTGG 59.226 54.545 0.00 0.00 0.00 4.61
504 565 3.708631 AGAGAGAGAGAGAGAGAGAGGTG 59.291 52.174 0.00 0.00 0.00 4.00
505 566 3.964031 GAGAGAGAGAGAGAGAGAGAGGT 59.036 52.174 0.00 0.00 0.00 3.85
506 567 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
507 568 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
508 569 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
509 570 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
510 571 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
511 572 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
512 573 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
513 574 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
514 575 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
515 576 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
516 577 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
517 578 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
518 579 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
519 580 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
520 581 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
521 582 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
522 583 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
523 584 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
524 585 4.078922 AGGAGAGAGAGAGAGAGAGAGAGA 60.079 50.000 0.00 0.00 0.00 3.10
525 586 4.222336 AGGAGAGAGAGAGAGAGAGAGAG 58.778 52.174 0.00 0.00 0.00 3.20
526 587 4.219115 GAGGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
527 588 3.323403 GGAGGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
528 589 3.309296 GGAGGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
529 590 2.370189 GGGAGGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
530 591 2.022035 AGGGAGGAGAGAGAGAGAGAGA 60.022 54.545 0.00 0.00 0.00 3.10
531 592 2.105477 CAGGGAGGAGAGAGAGAGAGAG 59.895 59.091 0.00 0.00 0.00 3.20
532 593 2.126882 CAGGGAGGAGAGAGAGAGAGA 58.873 57.143 0.00 0.00 0.00 3.10
533 594 1.477558 GCAGGGAGGAGAGAGAGAGAG 60.478 61.905 0.00 0.00 0.00 3.20
566 628 4.973168 ACACTACAGCAAGGATTCAAGAA 58.027 39.130 0.00 0.00 0.00 2.52
594 656 0.764890 TTCCCTGCAGCAGTACAAGT 59.235 50.000 21.26 0.00 0.00 3.16
635 697 4.775253 TCCCTCTTCTCTCCTTTCTTCTTC 59.225 45.833 0.00 0.00 0.00 2.87
636 698 4.757692 TCCCTCTTCTCTCCTTTCTTCTT 58.242 43.478 0.00 0.00 0.00 2.52
637 699 4.412060 TCCCTCTTCTCTCCTTTCTTCT 57.588 45.455 0.00 0.00 0.00 2.85
784 855 0.616111 TTCAGAGAGCCACTCCCTCC 60.616 60.000 5.12 0.00 45.96 4.30
1064 1156 2.102084 GACATGCTGCTGTCCTGATCTA 59.898 50.000 16.38 0.00 39.72 1.98
1170 1268 3.324108 GACCTACCGGGGTTGCCA 61.324 66.667 6.32 0.00 40.06 4.92
1215 1313 5.177327 GCTTGACTTGAGACTTGAGAGAAAG 59.823 44.000 0.00 0.00 0.00 2.62
1229 1327 0.241213 CTCGTCCTCGCTTGACTTGA 59.759 55.000 0.00 0.00 36.96 3.02
1236 1334 1.006102 CACCAACTCGTCCTCGCTT 60.006 57.895 0.00 0.00 36.96 4.68
1252 1350 2.103042 GCGCATCAGTCCAGTCCAC 61.103 63.158 0.30 0.00 0.00 4.02
1281 1379 1.600957 CATGATGCAACGATCCTCCAC 59.399 52.381 0.00 0.00 0.00 4.02
1762 1860 1.765314 AGGTGGATCGAGATTGGAAGG 59.235 52.381 0.00 0.00 0.00 3.46
1811 1914 1.959282 ACTGCAGGGAAGAAAGCTTTG 59.041 47.619 18.30 1.57 33.61 2.77
1875 1983 0.387202 CTAGGCAGTGCACTCGCTAT 59.613 55.000 28.26 22.13 39.64 2.97
1940 2051 6.042552 CCTTCTCTCAGATTAATTGAGCCCTA 59.957 42.308 16.49 5.42 41.41 3.53
1941 2052 5.163216 CCTTCTCTCAGATTAATTGAGCCCT 60.163 44.000 16.49 0.00 41.41 5.19
1942 2053 5.062528 CCTTCTCTCAGATTAATTGAGCCC 58.937 45.833 16.49 0.00 41.41 5.19
1943 2054 5.923204 TCCTTCTCTCAGATTAATTGAGCC 58.077 41.667 16.49 0.00 41.41 4.70
1944 2055 6.482973 CCTTCCTTCTCTCAGATTAATTGAGC 59.517 42.308 16.49 0.00 41.41 4.26
1945 2056 7.790027 TCCTTCCTTCTCTCAGATTAATTGAG 58.210 38.462 15.72 15.72 42.68 3.02
1946 2057 7.739995 TCCTTCCTTCTCTCAGATTAATTGA 57.260 36.000 0.00 0.00 0.00 2.57
1947 2058 8.046107 ACTTCCTTCCTTCTCTCAGATTAATTG 58.954 37.037 0.00 0.00 0.00 2.32
1948 2059 8.156822 ACTTCCTTCCTTCTCTCAGATTAATT 57.843 34.615 0.00 0.00 0.00 1.40
1972 2083 2.725723 CGCCAACACAAATCACAATGAC 59.274 45.455 0.00 0.00 0.00 3.06
2131 2252 4.278919 TCATCACAGCATCTCTCTCATCTC 59.721 45.833 0.00 0.00 0.00 2.75
2132 2253 4.216708 TCATCACAGCATCTCTCTCATCT 58.783 43.478 0.00 0.00 0.00 2.90
2133 2254 4.587584 TCATCACAGCATCTCTCTCATC 57.412 45.455 0.00 0.00 0.00 2.92
2134 2255 4.589374 TCATCATCACAGCATCTCTCTCAT 59.411 41.667 0.00 0.00 0.00 2.90
2135 2256 3.958798 TCATCATCACAGCATCTCTCTCA 59.041 43.478 0.00 0.00 0.00 3.27
2319 2449 1.003696 TGTGAGCTCCGAGAGAGAGAA 59.996 52.381 12.15 0.00 46.50 2.87
2360 2496 9.241919 TCTTTGTTCATTTGTCATATGGTATGT 57.758 29.630 2.13 0.00 0.00 2.29
2443 2598 8.469309 AAGAAAACCATCATCAGAAGAAAGAA 57.531 30.769 0.00 0.00 0.00 2.52
2444 2599 8.355169 CAAAGAAAACCATCATCAGAAGAAAGA 58.645 33.333 0.00 0.00 0.00 2.52
2445 2600 8.139989 ACAAAGAAAACCATCATCAGAAGAAAG 58.860 33.333 0.00 0.00 0.00 2.62
2446 2601 8.010733 ACAAAGAAAACCATCATCAGAAGAAA 57.989 30.769 0.00 0.00 0.00 2.52
2462 2617 3.063725 GCAATGCAGTGCAACAAAGAAAA 59.936 39.130 32.30 0.00 43.62 2.29
2536 2691 1.377856 GGCCTTGTTGCTCTCCTCC 60.378 63.158 0.00 0.00 0.00 4.30
2678 2842 2.294979 CATGACCTGGTGATGGTGATG 58.705 52.381 17.31 0.00 41.31 3.07
2679 2843 1.409241 GCATGACCTGGTGATGGTGAT 60.409 52.381 24.50 0.00 38.03 3.06
2680 2844 0.035152 GCATGACCTGGTGATGGTGA 60.035 55.000 24.50 0.00 38.03 4.02
2681 2845 0.322726 TGCATGACCTGGTGATGGTG 60.323 55.000 24.50 4.83 38.03 4.17
2682 2846 0.034767 CTGCATGACCTGGTGATGGT 60.035 55.000 24.50 0.00 41.07 3.55
2683 2847 1.381928 GCTGCATGACCTGGTGATGG 61.382 60.000 24.50 12.12 28.33 3.51
2833 2997 3.947132 CTGCTGCTGCTGCGTAGGT 62.947 63.158 23.38 0.00 43.34 3.08
3219 3389 1.210870 CATGTTGGTGTTGTTGCTGC 58.789 50.000 0.00 0.00 0.00 5.25
3221 3391 0.104671 GCCATGTTGGTGTTGTTGCT 59.895 50.000 0.00 0.00 40.46 3.91
3280 3450 3.805307 CTGCTCTGCTGCTGCTGC 61.805 66.667 22.51 22.51 40.48 5.25
3326 3508 3.606687 TCATCATGGCTAGCTATGCATG 58.393 45.455 30.37 28.89 35.31 4.06
3327 3509 3.994931 TCATCATGGCTAGCTATGCAT 57.005 42.857 30.37 22.03 35.31 3.96
3328 3510 3.994931 ATCATCATGGCTAGCTATGCA 57.005 42.857 30.37 21.00 35.31 3.96
3329 3511 5.021033 ACTATCATCATGGCTAGCTATGC 57.979 43.478 30.37 8.84 35.31 3.14
3363 3545 0.179089 GTGCTCTGCGGTGATCAGAT 60.179 55.000 0.00 0.00 39.56 2.90
3442 3629 0.742990 AGTGCGAGACGGAGAGAGAG 60.743 60.000 0.00 0.00 0.00 3.20
3445 3632 0.741574 GAGAGTGCGAGACGGAGAGA 60.742 60.000 0.00 0.00 0.00 3.10
3446 3633 1.719117 GAGAGTGCGAGACGGAGAG 59.281 63.158 0.00 0.00 0.00 3.20
3447 3634 2.101233 CGAGAGTGCGAGACGGAGA 61.101 63.158 0.00 0.00 0.00 3.71
3448 3635 2.392181 ACGAGAGTGCGAGACGGAG 61.392 63.158 0.00 0.00 46.97 4.63
3449 3636 2.358369 ACGAGAGTGCGAGACGGA 60.358 61.111 0.00 0.00 46.97 4.69
3581 3818 2.560542 GTTGAGTGCCAGAGAGAGAGAA 59.439 50.000 0.00 0.00 0.00 2.87
3582 3819 2.166829 GTTGAGTGCCAGAGAGAGAGA 58.833 52.381 0.00 0.00 0.00 3.10
3699 3943 2.633481 GGAGGGAGTGTGTACTTCTTGT 59.367 50.000 0.00 0.00 37.25 3.16
3700 3944 2.352814 CGGAGGGAGTGTGTACTTCTTG 60.353 54.545 0.00 0.00 37.25 3.02
3701 3945 1.893801 CGGAGGGAGTGTGTACTTCTT 59.106 52.381 0.00 0.00 37.25 2.52
3702 3946 1.203025 ACGGAGGGAGTGTGTACTTCT 60.203 52.381 0.00 0.00 37.25 2.85
3703 3947 1.254954 ACGGAGGGAGTGTGTACTTC 58.745 55.000 0.00 0.00 37.25 3.01
3704 3948 1.617357 GAACGGAGGGAGTGTGTACTT 59.383 52.381 0.00 0.00 37.25 2.24
3705 3949 1.254954 GAACGGAGGGAGTGTGTACT 58.745 55.000 0.00 0.00 40.66 2.73
3706 3950 0.245813 GGAACGGAGGGAGTGTGTAC 59.754 60.000 0.00 0.00 0.00 2.90
3792 4036 7.575414 ATGTTTGGTGTGTTAGATGTAAACA 57.425 32.000 0.00 0.00 39.94 2.83
3946 4192 6.498303 TGTGGCCATGAGATATGTACTATCTT 59.502 38.462 9.72 1.09 45.39 2.40
3949 4195 5.543790 TGTGTGGCCATGAGATATGTACTAT 59.456 40.000 9.72 0.00 0.00 2.12
3950 4196 4.898861 TGTGTGGCCATGAGATATGTACTA 59.101 41.667 9.72 0.00 0.00 1.82
3958 4204 1.908619 TGTAGTGTGTGGCCATGAGAT 59.091 47.619 9.72 0.00 0.00 2.75
3992 4238 3.971245 ACTTTGTTTTGCCCAAGTCAA 57.029 38.095 0.00 0.00 0.00 3.18
4023 4270 5.726980 ACCAATCAACGTGTACCTTAGTA 57.273 39.130 0.00 0.00 0.00 1.82
4055 4302 4.105697 GGGGGTGTATATCTGGATTTTCCA 59.894 45.833 0.00 0.00 45.98 3.53
4079 4326 8.442384 TCCACCGTTTATCGAAAAAGTATAAAC 58.558 33.333 0.00 0.00 40.34 2.01
4084 4331 7.437793 AAATCCACCGTTTATCGAAAAAGTA 57.562 32.000 0.00 0.00 42.86 2.24
4085 4332 5.952526 AATCCACCGTTTATCGAAAAAGT 57.047 34.783 0.00 0.00 42.86 2.66
4086 4333 8.905103 ATAAAATCCACCGTTTATCGAAAAAG 57.095 30.769 0.00 0.00 42.86 2.27
4087 4334 9.130312 CAATAAAATCCACCGTTTATCGAAAAA 57.870 29.630 0.00 0.00 42.86 1.94
4088 4335 7.755822 CCAATAAAATCCACCGTTTATCGAAAA 59.244 33.333 0.00 0.00 42.86 2.29
4089 4336 7.251994 CCAATAAAATCCACCGTTTATCGAAA 58.748 34.615 0.00 0.00 42.86 3.46
4090 4337 6.678409 GCCAATAAAATCCACCGTTTATCGAA 60.678 38.462 0.00 0.00 42.86 3.71
4091 4338 5.220892 GCCAATAAAATCCACCGTTTATCGA 60.221 40.000 0.00 0.00 42.86 3.59
4092 4339 4.973663 GCCAATAAAATCCACCGTTTATCG 59.026 41.667 0.00 0.00 39.52 2.92
4093 4340 6.144078 AGCCAATAAAATCCACCGTTTATC 57.856 37.500 0.00 0.00 30.46 1.75
4094 4341 6.538945 AAGCCAATAAAATCCACCGTTTAT 57.461 33.333 0.00 0.00 32.54 1.40
4095 4342 5.986501 AAGCCAATAAAATCCACCGTTTA 57.013 34.783 0.00 0.00 0.00 2.01
4096 4343 4.882842 AAGCCAATAAAATCCACCGTTT 57.117 36.364 0.00 0.00 0.00 3.60
4097 4344 5.986501 TTAAGCCAATAAAATCCACCGTT 57.013 34.783 0.00 0.00 0.00 4.44
4098 4345 5.986501 TTTAAGCCAATAAAATCCACCGT 57.013 34.783 0.00 0.00 0.00 4.83
4099 4346 6.257630 CCATTTTAAGCCAATAAAATCCACCG 59.742 38.462 8.65 1.19 41.30 4.94
4100 4347 7.334858 TCCATTTTAAGCCAATAAAATCCACC 58.665 34.615 8.65 0.00 41.30 4.61
4101 4348 7.011389 GCTCCATTTTAAGCCAATAAAATCCAC 59.989 37.037 8.65 0.00 41.30 4.02
4102 4349 7.047271 GCTCCATTTTAAGCCAATAAAATCCA 58.953 34.615 8.65 1.22 41.30 3.41
4103 4350 7.047271 TGCTCCATTTTAAGCCAATAAAATCC 58.953 34.615 8.65 2.23 41.30 3.01
4104 4351 8.667076 ATGCTCCATTTTAAGCCAATAAAATC 57.333 30.769 8.65 1.92 41.30 2.17
4105 4352 8.266473 TGATGCTCCATTTTAAGCCAATAAAAT 58.734 29.630 6.65 6.65 43.02 1.82
4106 4353 7.619050 TGATGCTCCATTTTAAGCCAATAAAA 58.381 30.769 3.16 3.16 38.66 1.52
4107 4354 7.180322 TGATGCTCCATTTTAAGCCAATAAA 57.820 32.000 0.00 0.00 37.73 1.40
4108 4355 6.788598 TGATGCTCCATTTTAAGCCAATAA 57.211 33.333 0.00 0.00 37.73 1.40
4109 4356 6.606796 TCTTGATGCTCCATTTTAAGCCAATA 59.393 34.615 0.00 0.00 37.73 1.90
4110 4357 5.422970 TCTTGATGCTCCATTTTAAGCCAAT 59.577 36.000 0.00 0.00 37.73 3.16
4111 4358 4.771577 TCTTGATGCTCCATTTTAAGCCAA 59.228 37.500 0.00 0.00 37.73 4.52
4112 4359 4.343231 TCTTGATGCTCCATTTTAAGCCA 58.657 39.130 0.00 0.00 37.73 4.75
4113 4360 4.202090 CCTCTTGATGCTCCATTTTAAGCC 60.202 45.833 0.00 0.00 37.73 4.35
4114 4361 4.641989 TCCTCTTGATGCTCCATTTTAAGC 59.358 41.667 0.00 0.00 39.02 3.09
4115 4362 6.956202 ATCCTCTTGATGCTCCATTTTAAG 57.044 37.500 0.00 0.00 30.54 1.85
4116 4363 7.345691 TGTATCCTCTTGATGCTCCATTTTAA 58.654 34.615 0.00 0.00 37.04 1.52
4117 4364 6.899089 TGTATCCTCTTGATGCTCCATTTTA 58.101 36.000 0.00 0.00 37.04 1.52
4118 4365 5.759059 TGTATCCTCTTGATGCTCCATTTT 58.241 37.500 0.00 0.00 37.04 1.82
4119 4366 5.378230 TGTATCCTCTTGATGCTCCATTT 57.622 39.130 0.00 0.00 37.04 2.32
4120 4367 5.378230 TTGTATCCTCTTGATGCTCCATT 57.622 39.130 0.00 0.00 37.04 3.16
4121 4368 5.128919 GTTTGTATCCTCTTGATGCTCCAT 58.871 41.667 0.00 0.00 37.04 3.41
4122 4369 4.019411 TGTTTGTATCCTCTTGATGCTCCA 60.019 41.667 0.00 0.00 37.04 3.86
4123 4370 4.333926 GTGTTTGTATCCTCTTGATGCTCC 59.666 45.833 0.00 0.00 37.04 4.70
4124 4371 4.937620 TGTGTTTGTATCCTCTTGATGCTC 59.062 41.667 0.00 0.00 37.04 4.26
4125 4372 4.910195 TGTGTTTGTATCCTCTTGATGCT 58.090 39.130 0.00 0.00 37.04 3.79
4126 4373 5.627499 TTGTGTTTGTATCCTCTTGATGC 57.373 39.130 0.00 0.00 36.68 3.91
4127 4374 7.439157 TCTTTGTGTTTGTATCCTCTTGATG 57.561 36.000 0.00 0.00 34.76 3.07
4128 4375 6.150140 GCTCTTTGTGTTTGTATCCTCTTGAT 59.850 38.462 0.00 0.00 37.49 2.57
4129 4376 5.470098 GCTCTTTGTGTTTGTATCCTCTTGA 59.530 40.000 0.00 0.00 0.00 3.02
4130 4377 5.239306 TGCTCTTTGTGTTTGTATCCTCTTG 59.761 40.000 0.00 0.00 0.00 3.02
4131 4378 5.376625 TGCTCTTTGTGTTTGTATCCTCTT 58.623 37.500 0.00 0.00 0.00 2.85
4132 4379 4.973168 TGCTCTTTGTGTTTGTATCCTCT 58.027 39.130 0.00 0.00 0.00 3.69
4133 4380 5.886960 ATGCTCTTTGTGTTTGTATCCTC 57.113 39.130 0.00 0.00 0.00 3.71
4134 4381 6.149474 GTGTATGCTCTTTGTGTTTGTATCCT 59.851 38.462 0.00 0.00 0.00 3.24
4135 4382 6.314784 GTGTATGCTCTTTGTGTTTGTATCC 58.685 40.000 0.00 0.00 0.00 2.59
4136 4383 6.314784 GGTGTATGCTCTTTGTGTTTGTATC 58.685 40.000 0.00 0.00 0.00 2.24
4137 4384 5.183140 GGGTGTATGCTCTTTGTGTTTGTAT 59.817 40.000 0.00 0.00 0.00 2.29
4138 4385 4.517453 GGGTGTATGCTCTTTGTGTTTGTA 59.483 41.667 0.00 0.00 0.00 2.41
4139 4386 3.317993 GGGTGTATGCTCTTTGTGTTTGT 59.682 43.478 0.00 0.00 0.00 2.83
4140 4387 3.609175 CGGGTGTATGCTCTTTGTGTTTG 60.609 47.826 0.00 0.00 0.00 2.93
4141 4388 2.552315 CGGGTGTATGCTCTTTGTGTTT 59.448 45.455 0.00 0.00 0.00 2.83
4142 4389 2.151202 CGGGTGTATGCTCTTTGTGTT 58.849 47.619 0.00 0.00 0.00 3.32
4143 4390 1.610624 CCGGGTGTATGCTCTTTGTGT 60.611 52.381 0.00 0.00 0.00 3.72
4144 4391 1.086696 CCGGGTGTATGCTCTTTGTG 58.913 55.000 0.00 0.00 0.00 3.33
4145 4392 0.690762 ACCGGGTGTATGCTCTTTGT 59.309 50.000 6.32 0.00 0.00 2.83
4146 4393 1.066143 AGACCGGGTGTATGCTCTTTG 60.066 52.381 3.30 0.00 0.00 2.77
4147 4394 1.207329 GAGACCGGGTGTATGCTCTTT 59.793 52.381 3.30 0.00 0.00 2.52
4148 4395 0.824759 GAGACCGGGTGTATGCTCTT 59.175 55.000 3.30 0.00 0.00 2.85
4149 4396 0.033011 AGAGACCGGGTGTATGCTCT 60.033 55.000 3.30 6.98 0.00 4.09
4150 4397 0.103208 CAGAGACCGGGTGTATGCTC 59.897 60.000 3.30 4.39 0.00 4.26
4151 4398 1.961180 GCAGAGACCGGGTGTATGCT 61.961 60.000 29.88 10.56 31.61 3.79
4152 4399 1.521681 GCAGAGACCGGGTGTATGC 60.522 63.158 25.12 25.12 0.00 3.14
4153 4400 0.465705 ATGCAGAGACCGGGTGTATG 59.534 55.000 14.05 14.05 0.00 2.39
4154 4401 1.964223 CTATGCAGAGACCGGGTGTAT 59.036 52.381 3.30 0.00 0.00 2.29
4155 4402 1.341679 ACTATGCAGAGACCGGGTGTA 60.342 52.381 16.75 0.00 0.00 2.90
4156 4403 0.614979 ACTATGCAGAGACCGGGTGT 60.615 55.000 16.75 0.00 0.00 4.16
4157 4404 0.537188 AACTATGCAGAGACCGGGTG 59.463 55.000 16.75 0.00 0.00 4.61
4158 4405 2.154567 TAACTATGCAGAGACCGGGT 57.845 50.000 16.75 0.00 0.00 5.28
4159 4406 2.693591 TCTTAACTATGCAGAGACCGGG 59.306 50.000 16.75 0.00 0.00 5.73
4160 4407 4.038042 TCATCTTAACTATGCAGAGACCGG 59.962 45.833 16.75 0.00 0.00 5.28
4161 4408 5.009110 TCTCATCTTAACTATGCAGAGACCG 59.991 44.000 16.75 0.53 0.00 4.79
4162 4409 6.398234 TCTCATCTTAACTATGCAGAGACC 57.602 41.667 16.75 0.00 0.00 3.85
4163 4410 7.090173 GGATCTCATCTTAACTATGCAGAGAC 58.910 42.308 16.75 1.75 34.17 3.36
4164 4411 6.072230 CGGATCTCATCTTAACTATGCAGAGA 60.072 42.308 16.75 6.39 35.61 3.10
4165 4412 6.092092 CGGATCTCATCTTAACTATGCAGAG 58.908 44.000 6.84 6.84 0.00 3.35
4166 4413 5.536538 ACGGATCTCATCTTAACTATGCAGA 59.463 40.000 0.00 0.00 0.00 4.26
4167 4414 5.632764 CACGGATCTCATCTTAACTATGCAG 59.367 44.000 0.00 0.00 0.00 4.41
4168 4415 5.301805 TCACGGATCTCATCTTAACTATGCA 59.698 40.000 0.00 0.00 0.00 3.96
4169 4416 5.773575 TCACGGATCTCATCTTAACTATGC 58.226 41.667 0.00 0.00 0.00 3.14
4170 4417 6.810676 CCATCACGGATCTCATCTTAACTATG 59.189 42.308 0.00 0.00 36.56 2.23
4171 4418 6.071108 CCCATCACGGATCTCATCTTAACTAT 60.071 42.308 0.00 0.00 36.56 2.12
4172 4419 5.243954 CCCATCACGGATCTCATCTTAACTA 59.756 44.000 0.00 0.00 36.56 2.24
4173 4420 4.039730 CCCATCACGGATCTCATCTTAACT 59.960 45.833 0.00 0.00 36.56 2.24
4174 4421 4.310769 CCCATCACGGATCTCATCTTAAC 58.689 47.826 0.00 0.00 36.56 2.01
4175 4422 3.244215 GCCCATCACGGATCTCATCTTAA 60.244 47.826 0.00 0.00 36.56 1.85
4176 4423 2.300152 GCCCATCACGGATCTCATCTTA 59.700 50.000 0.00 0.00 36.56 2.10
4177 4424 1.071385 GCCCATCACGGATCTCATCTT 59.929 52.381 0.00 0.00 36.56 2.40
4178 4425 0.683973 GCCCATCACGGATCTCATCT 59.316 55.000 0.00 0.00 36.56 2.90
4179 4426 0.394192 TGCCCATCACGGATCTCATC 59.606 55.000 0.00 0.00 36.56 2.92
4180 4427 0.839277 TTGCCCATCACGGATCTCAT 59.161 50.000 0.00 0.00 36.56 2.90
4181 4428 0.617935 TTTGCCCATCACGGATCTCA 59.382 50.000 0.00 0.00 36.56 3.27
4182 4429 1.017387 GTTTGCCCATCACGGATCTC 58.983 55.000 0.00 0.00 36.56 2.75
4183 4430 0.327924 TGTTTGCCCATCACGGATCT 59.672 50.000 0.00 0.00 36.56 2.75
4184 4431 1.135402 GTTGTTTGCCCATCACGGATC 60.135 52.381 0.00 0.00 36.56 3.36
4185 4432 0.887933 GTTGTTTGCCCATCACGGAT 59.112 50.000 0.00 0.00 36.56 4.18
4186 4433 0.466372 TGTTGTTTGCCCATCACGGA 60.466 50.000 0.00 0.00 36.56 4.69
4187 4434 0.387202 TTGTTGTTTGCCCATCACGG 59.613 50.000 0.00 0.00 0.00 4.94
4188 4435 1.202348 TGTTGTTGTTTGCCCATCACG 60.202 47.619 0.00 0.00 0.00 4.35
4189 4436 2.593346 TGTTGTTGTTTGCCCATCAC 57.407 45.000 0.00 0.00 0.00 3.06
4190 4437 3.133542 TCATTGTTGTTGTTTGCCCATCA 59.866 39.130 0.00 0.00 0.00 3.07
4191 4438 3.494251 GTCATTGTTGTTGTTTGCCCATC 59.506 43.478 0.00 0.00 0.00 3.51
4192 4439 3.118482 TGTCATTGTTGTTGTTTGCCCAT 60.118 39.130 0.00 0.00 0.00 4.00
4193 4440 2.234661 TGTCATTGTTGTTGTTTGCCCA 59.765 40.909 0.00 0.00 0.00 5.36
4194 4441 2.898705 TGTCATTGTTGTTGTTTGCCC 58.101 42.857 0.00 0.00 0.00 5.36
4195 4442 6.128580 GGATATTGTCATTGTTGTTGTTTGCC 60.129 38.462 0.00 0.00 0.00 4.52
4196 4443 6.128580 GGGATATTGTCATTGTTGTTGTTTGC 60.129 38.462 0.00 0.00 0.00 3.68
4197 4444 6.368516 GGGGATATTGTCATTGTTGTTGTTTG 59.631 38.462 0.00 0.00 0.00 2.93
4198 4445 6.042552 TGGGGATATTGTCATTGTTGTTGTTT 59.957 34.615 0.00 0.00 0.00 2.83
4199 4446 5.541868 TGGGGATATTGTCATTGTTGTTGTT 59.458 36.000 0.00 0.00 0.00 2.83
4200 4447 5.047377 GTGGGGATATTGTCATTGTTGTTGT 60.047 40.000 0.00 0.00 0.00 3.32
4201 4448 5.410067 GTGGGGATATTGTCATTGTTGTTG 58.590 41.667 0.00 0.00 0.00 3.33
4202 4449 4.466015 GGTGGGGATATTGTCATTGTTGTT 59.534 41.667 0.00 0.00 0.00 2.83
4203 4450 4.023291 GGTGGGGATATTGTCATTGTTGT 58.977 43.478 0.00 0.00 0.00 3.32
4204 4451 4.022603 TGGTGGGGATATTGTCATTGTTG 58.977 43.478 0.00 0.00 0.00 3.33
4205 4452 4.280819 CTGGTGGGGATATTGTCATTGTT 58.719 43.478 0.00 0.00 0.00 2.83
4206 4453 3.902218 CTGGTGGGGATATTGTCATTGT 58.098 45.455 0.00 0.00 0.00 2.71
4207 4454 2.624838 GCTGGTGGGGATATTGTCATTG 59.375 50.000 0.00 0.00 0.00 2.82
4208 4455 2.244510 TGCTGGTGGGGATATTGTCATT 59.755 45.455 0.00 0.00 0.00 2.57
4209 4456 1.852309 TGCTGGTGGGGATATTGTCAT 59.148 47.619 0.00 0.00 0.00 3.06
4210 4457 1.294041 TGCTGGTGGGGATATTGTCA 58.706 50.000 0.00 0.00 0.00 3.58
4211 4458 2.664402 ATGCTGGTGGGGATATTGTC 57.336 50.000 0.00 0.00 0.00 3.18
4212 4459 3.657239 TGATATGCTGGTGGGGATATTGT 59.343 43.478 0.00 0.00 31.93 2.71
4213 4460 4.305539 TGATATGCTGGTGGGGATATTG 57.694 45.455 0.00 0.00 31.93 1.90
4214 4461 4.541310 TCATGATATGCTGGTGGGGATATT 59.459 41.667 0.00 0.00 31.93 1.28
4215 4462 4.080129 GTCATGATATGCTGGTGGGGATAT 60.080 45.833 0.00 0.00 33.91 1.63
4216 4463 3.264193 GTCATGATATGCTGGTGGGGATA 59.736 47.826 0.00 0.00 0.00 2.59
4217 4464 2.040813 GTCATGATATGCTGGTGGGGAT 59.959 50.000 0.00 0.00 0.00 3.85
4218 4465 1.421268 GTCATGATATGCTGGTGGGGA 59.579 52.381 0.00 0.00 0.00 4.81
4219 4466 1.143481 TGTCATGATATGCTGGTGGGG 59.857 52.381 0.00 0.00 0.00 4.96
4220 4467 2.224606 GTGTCATGATATGCTGGTGGG 58.775 52.381 0.00 0.00 0.00 4.61
4221 4468 2.224606 GGTGTCATGATATGCTGGTGG 58.775 52.381 0.00 0.00 0.00 4.61
4222 4469 2.615447 GTGGTGTCATGATATGCTGGTG 59.385 50.000 0.00 0.00 0.00 4.17
4223 4470 2.239402 TGTGGTGTCATGATATGCTGGT 59.761 45.455 0.00 0.00 0.00 4.00
4224 4471 2.615447 GTGTGGTGTCATGATATGCTGG 59.385 50.000 0.00 0.00 0.00 4.85
4225 4472 3.272581 TGTGTGGTGTCATGATATGCTG 58.727 45.455 0.00 0.00 0.00 4.41
4226 4473 3.632643 TGTGTGGTGTCATGATATGCT 57.367 42.857 0.00 0.00 0.00 3.79
4227 4474 3.488047 GCTTGTGTGGTGTCATGATATGC 60.488 47.826 0.00 0.00 0.00 3.14
4228 4475 3.065786 GGCTTGTGTGGTGTCATGATATG 59.934 47.826 0.00 0.00 0.00 1.78
4229 4476 3.282021 GGCTTGTGTGGTGTCATGATAT 58.718 45.455 0.00 0.00 0.00 1.63
4230 4477 2.039613 TGGCTTGTGTGGTGTCATGATA 59.960 45.455 0.00 0.00 0.00 2.15
4231 4478 1.202915 TGGCTTGTGTGGTGTCATGAT 60.203 47.619 0.00 0.00 0.00 2.45
4232 4479 0.182299 TGGCTTGTGTGGTGTCATGA 59.818 50.000 0.00 0.00 0.00 3.07
4233 4480 0.311790 GTGGCTTGTGTGGTGTCATG 59.688 55.000 0.00 0.00 0.00 3.07
4234 4481 1.165907 CGTGGCTTGTGTGGTGTCAT 61.166 55.000 0.00 0.00 0.00 3.06
4235 4482 1.817520 CGTGGCTTGTGTGGTGTCA 60.818 57.895 0.00 0.00 0.00 3.58
4236 4483 1.498865 CTCGTGGCTTGTGTGGTGTC 61.499 60.000 0.00 0.00 0.00 3.67
4237 4484 1.523711 CTCGTGGCTTGTGTGGTGT 60.524 57.895 0.00 0.00 0.00 4.16
4238 4485 2.253758 CCTCGTGGCTTGTGTGGTG 61.254 63.158 0.00 0.00 0.00 4.17
4239 4486 2.111043 CCTCGTGGCTTGTGTGGT 59.889 61.111 0.00 0.00 0.00 4.16
4240 4487 1.507141 GAACCTCGTGGCTTGTGTGG 61.507 60.000 2.76 0.00 36.63 4.17
4241 4488 0.532862 AGAACCTCGTGGCTTGTGTG 60.533 55.000 2.76 0.00 36.63 3.82
4242 4489 0.180406 AAGAACCTCGTGGCTTGTGT 59.820 50.000 2.76 0.00 36.63 3.72
4243 4490 0.868406 GAAGAACCTCGTGGCTTGTG 59.132 55.000 2.76 0.00 36.63 3.33
4244 4491 0.468226 TGAAGAACCTCGTGGCTTGT 59.532 50.000 2.76 0.00 36.63 3.16
4245 4492 1.264288 GTTGAAGAACCTCGTGGCTTG 59.736 52.381 2.76 0.00 36.63 4.01
4246 4493 1.134220 TGTTGAAGAACCTCGTGGCTT 60.134 47.619 2.76 0.00 36.63 4.35
4247 4494 0.468226 TGTTGAAGAACCTCGTGGCT 59.532 50.000 2.76 0.00 36.63 4.75
4248 4495 1.523758 ATGTTGAAGAACCTCGTGGC 58.476 50.000 2.76 0.00 36.63 5.01
4249 4496 4.755123 AGTAAATGTTGAAGAACCTCGTGG 59.245 41.667 0.99 0.99 39.83 4.94
4250 4497 5.924475 AGTAAATGTTGAAGAACCTCGTG 57.076 39.130 0.00 0.00 0.00 4.35
4251 4498 7.496591 TGTTTAGTAAATGTTGAAGAACCTCGT 59.503 33.333 0.00 0.00 0.00 4.18
4252 4499 7.857569 TGTTTAGTAAATGTTGAAGAACCTCG 58.142 34.615 0.00 0.00 0.00 4.63
4253 4500 9.665264 CTTGTTTAGTAAATGTTGAAGAACCTC 57.335 33.333 0.00 0.00 0.00 3.85
4254 4501 8.135529 GCTTGTTTAGTAAATGTTGAAGAACCT 58.864 33.333 0.00 0.00 0.00 3.50
4255 4502 7.918562 TGCTTGTTTAGTAAATGTTGAAGAACC 59.081 33.333 0.00 0.00 0.00 3.62
4256 4503 8.850454 TGCTTGTTTAGTAAATGTTGAAGAAC 57.150 30.769 0.00 0.00 0.00 3.01
4257 4504 9.296400 GTTGCTTGTTTAGTAAATGTTGAAGAA 57.704 29.630 0.00 0.00 29.85 2.52
4258 4505 8.462811 TGTTGCTTGTTTAGTAAATGTTGAAGA 58.537 29.630 0.00 0.00 29.85 2.87
4259 4506 8.627487 TGTTGCTTGTTTAGTAAATGTTGAAG 57.373 30.769 0.00 0.00 29.85 3.02
4260 4507 9.593134 AATGTTGCTTGTTTAGTAAATGTTGAA 57.407 25.926 0.00 0.00 29.85 2.69
4261 4508 9.593134 AAATGTTGCTTGTTTAGTAAATGTTGA 57.407 25.926 0.00 0.00 29.85 3.18
4277 4524 9.651913 CCCTTTGTTACATATTAAATGTTGCTT 57.348 29.630 8.06 0.00 33.76 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.