>input_sequence_34308
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---------------------------------------------------ATGTATCATCACCACCTTCAGCAGCAGCA
GCAGCAGCGTGGAGAATCGGAAGCGGCGGCATCGGTAGATCAGGACAGCAGCATGTCCAACCTCACCACCTCCGCCTCCG
CTTCCGCCAACCCTCCTCCTCCTCC------AACCCCGGCCTCCAACAAGCGCAAGCGAAGCCTACCTGGCAACCCCGGT
AGGTCCTTCTCCTCGGTTTAATTTCTTGTTTGCTTTCTCTCAAGTCTCAAGTCAAGCGAGGACGAGTTGGTGGACTGGAC
TGATGCGCATGTCTGTATGTGGAGGATCGTTGCATCATGTTACTAATCTTTGTCCGCGCGTGTTTTTCATGGAAATGGAA
CCCAAGACCCAGAGTCGGAGGTGGTTGCGCTGTCTCCGGCGACGCTGATGGCGACGAACCGGTTCCTGTGCGAGATCTGC
GGCAAGGGGTTCCAGCGCGACCAGAACCTGCAGCTGCACCGGCGGGGGCACAACCTGCCATGGAAGCTGAAGCAGCGCGG
GAGCAAGGAGGTGGTGCGGAAGAAGGTGTATATCTGCCCGGAGGCGTCGTGCGTGCACCACGACCCGTCGCGCGCGCTGG
GCGACCTCACCGGGATCAAGAAGCACTTCTTCCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAG
TACGCCGTGCAGTCCGACTGGAAGGCGCACTCCAAGATCTGCGGCACCCGCGAGTACAAGTGCGACTGCGGGACCGTCTT
CTCCAGGTTCTTATCCGTTCCTTCCAATCTCGATCCACCTCTTCTGCTTATACC-----ATGCCATGCATCATCAAAGCT
TTCTTCCCTGCAGTCTTGTTGATTTCTCGTTACTATATATTCTTGTGTCTTG----GC-AACATAGCGAGTGCACTGCCT
AGAAATTACTA---CAGTAGAATTCAAGTAGAGGATCGTGAACATTAGGGTAGGGCTCAATTAATCTGAGAGAAGGAAGG
AAGTCATTGTGATTTGTGTTGGCGAGTCAGGCC-GGATGAGGC----AACGCAGAAGAAGCATGGATGGATGCAAAGATG
GACCACTTTTACGGCCCGGCCGGGGGTCCTCTTTCTTTTTGTTTCGGCCATG-----GATGAGAGGAGCGGCTGTGCAGC
TCGTGTGGAAGGAGATGAGAG-----AGATGCTGTGATGATGA---GGATCGAGCTTTGGGAGACGAGAATTCAGACATG
TGAATCTCTTTGCAGAGCTGAGCTGCCTTTCCATCTCACTCCTCCTGCC-TAGCCTAATTGCCTATGCATGCTTACACTA
TTCCCTCCGTGCTGTCACTTCCATGCGTCCTCTCCTCCCTGATTCTCTT------TCTCTCTCTCGGAGCTCACACCGCA
CGGCACGGCAGCGTCACATACCATATGA-------------------CAAATGAACAAAGAATCAGGGGAAAGTTTTAGC
TTTACCTTTTCTCTTGCCCTTCCTTCTCATGCTGCATTTCTTTCTTCTGATGATGGTTTTCTTTGTTGCACTGCATTGCA
TGCAGGCGGGACAGCTTCATCACGCACCGGGCCTTCTGCGACGCGCTCACGGAGGAGAGCAACAAGGCCATCAGCGGGGG
CGGCCTGCCACTGCCACCCATCGCGCACGCCCAGCACCACGCCATGCTCTATTCGCCGCACGATCTGATGCAGCAGCAGC
AG---------CACCAGGAGCTCGCCGCGTTCCAGGACCACCATCACCATCACCAGGTCATGCAGCAGCATTGCAACTTC
GACGTGAAGCCGGAGATGCAGCCGTGGCCAACCATGCCCTACGACGACGTCCACCACCCGCTGCTGCAGCCGCTCTGCAG
CGCCACCGCGCAGAGCTCCGCCACGTCCGTGCCGACACCTACGCA------GCAGCAGCAGCTTCCCGCGGCAGCCGCGC
ACTTGTCGGCCACAGCGCTGCTACAAAAGGCGGCGCAGATGGGCGCCACCATCGGCGGGGCCGGCGCTGGCGGGGCGGGA
GTGCACTACACCCAGATGGCCGGCTCGGCGACCAGCGCGACCGGCAGCGCCACGTTCGGGCTCGGCCTCTCGTGCCTCAG
CAACCAGCAGATGATGAGCCTCGCCAGGACCGCCTCCCAAGGCCGGAGCGGCGAGGAAGGCGGCGCCTCGGGAGGGGCCA
ACGACGGCATGACCAGGGACTTCCTGGGGCTGCGCGCCTTCTCGCACCGCGACATCCTCGGCCTCGCCGGCTTTGACTCG
TCGTGCATGGGCACCGCCGTGAACACGGGCAGCAACAACACCAACATGGCGCCCTGCTACGAGCCACAGCAACAAGGACA
GCCGCAGCCGCAGC------------AGCAGCAGAGCAGCAACGAGCCGTGGCATGGCATGGGTAGC----CATGCATAG
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>chr3D_1_TraesCS3D01G209800
TACATTTGTAAGACAAAGGAAAAGACAGAAAGCTCAACATCGGTGCAGCATTGCTACCAGCGTGGTGTGTGGGGGGTGTC
GCTATGGTTCACAATGTTATATACAGTCCGTGATTTTAAAATACTAGTTTCCACTTCTACTACTGTACTTAATTATCATC
ATCTTAAATAAA----GTATATAATTACAAGAAGGACAGAAGGGTTGCCTTCTGT------TTTTATTTTTGTTTTTACT
TTTGCTCTTGCATTTGCCCCATAGGCCATAG---------------------------CTAGAGAGAGCAT---------
-GAAGGGAAGAAGGCTCAACTGCTGATTTAGTCAGGATTTTG-CTTCTTTTTGGCCCCTAAAGCAAGGAAGCAGATAAAG
GAGGGAGAGGAGGGGTTTGGTTTGGTCATTTGCTCAGCCTTCTTCTCCCCCTCCCCCTC------------CCCCTATGG
CTGCCAGCACTGTGGCCTCACCCTTTTTCTCTCTCATGGGGGCCGTCTTCTTCCAGCTTGCATAGCTCCTGATCTCCGTT
CCCCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCCT-GCACTGCCAGCCAGTTCTTGAATCCTT
GCTGTAGTGTTCTACACTTGTACTGCTGCAGGGAAAGAAAGTAGAGAGAGAAAGAAGAAGAAGAAAGGAGAGAAGAGGGA
AGGGAGAGAATCTGAATTTGCTTTCCAGTCATTGACCAACCCAACCCCAGTTTCCCCTTGTTTGTCCCCTTCCCCTCCAT
CCTTGATACCTGTGTTATTCCCTGAGCTGCT---------GCCGCCGCCTGAGGGGAGGGAGTGGCTCTCTG-------A
ACTCTCTCCTCTTGTCAC-----TCTTGCCTTGCCCCCATCCTGTTCTTCCTCCTCCTCCGTTCTTCAG--TTAATGCCC
CCTCTGTAGCAGCATCAAATTTATTGCCACTCCCTCCTTGGGCCTTGGCTAAGTTGTGTTTAGA-------GGGAGAGAG
AGATAACCTAAGGCCTGAATCAAACCCCTGGCACTACAAGTTTGCCGCTTTATGTATCATCACCACCTTCAGCAGCAGCA
GCAGCAGCGTGGAGAATCGGAAGCGGCGGCATCGGTAGATCAGGACAGCAGCATGTCCAACCTCACCACCTCCGCCTCCG
CTTCCGCCAACCCTCCTCCTCCTCC------AACCCCGGCCTCCAACAAGCGCAAGCGAAGCCTACCTGGCAACCCCGGT
AGGTCCTTCTCCTCGGTTTAATTTCTTGTTTGCTTTCTCTCAAGTCTCAAGTCAAGCGAGGACGAGTTGGTGGACTGGAC
TGATGCGCATGTCTGTATGTGGAGGATCGTTGCATCATGTTACTAATCTTTGTCCGCGCGTGTTTTTCATGGAAATGGAA
CCCAAGACCCAGAGTCGGAGGTGGTTGCGCTGTCTCCGGCGACGCTGATGGCGACGAACCGGTTCCTGTGCGAGATCTGC
GGCAAGGGGTTCCAGCGCGACCAGAACCTGCAGCTGCACCGGCGGGGGCACAACCTGCCATGGAAGCTGAAGCAGCGCGG
GAGCAAGGAGGTGGTGCGGAAGAAGGTGTATATCTGCCCGGAGGCGTCGTGCGTGCACCACGACCCGTCGCGCGCGCTGG
GCGACCTCACCGGGATCAAGAAGCACTTCTTCCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAG
TACGCCGTGCAGTCCGACTGGAAGGCGCACTCCAAGATCTGCGGCACCCGCGAGTACAAGTGCGACTGCGGGACCGTCTT
CTCCAGGTTCTTATCCGTTCCTTCCAATCTCGATCCACCTCTTCTGCTTATACC-----ATGCCATGCATCATCAAAGCT
TTCTTCCCTGCAGTCTTGTTGATTTCTCGTTACTATATATTCTTGTGTCTTG----GC-AACATAGCGAGTGCACTGCCT
AGAAATTACTA---CAGTAGAATTCAAGTAGAGGATCGTGAACATTAGGGTAGGGCTCAATTAATCTGAGAGAAGGAAGG
AAGTCATTGTGATTTGTGTTGGCGAGTCAGGCC-GGATGAGGC----AACGCAGAAGAAGCATGGATGGATGCAAAGATG
GACCACTTTTACGGCCCGGCCGGGGGTCCTCTTTCTTTTTGTTTCGGCCATG-----GATGAGAGGAGCGGCTGTGCAGC
TCGTGTGGAAGGAGATGAGAG-----AGATGCTGTGATGATGA---GGATCGAGCTTTGGGAGACGAGAATTCAGACATG
TGAATCTCTTTGCAGAGCTGAGCTGCCTTTCCATCTCACTCCTCCTGCC-TAGCCTAATTGCCTATGCATGCTTACACTA
TTCCCTCCGTGCTGTCACTTCCATGCGTCCTCTCCTCCCTGATTCTCTT------TCTCTCTCTCGGAGCTCACACCGCA
CGGCACGGCAGCGTCACATACCATATGA-------------------CAAATGAACAAAGAATCAGGGGAAAGTTTTAGC
TTTACCTTTTCTCTTGCCCTTCCTTCTCATGCTGCATTTCTTTCTTCTGATGATGGTTTTCTTTGTTGCACTGCATTGCA
TGCAGGCGGGACAGCTTCATCACGCACCGGGCCTTCTGCGACGCGCTCACGGAGGAGAGCAACAAGGCCATCAGCGGGGG
CGGCCTGCCACTGCCACCCATCGCGCACGCCCAGCACCACGCCATGCTCTATTCGCCGCACGATCTGATGCAGCAGCAGC
AG---------CACCAGGAGCTCGCCGCGTTCCAGGACCACCATCACCATCACCAGGTCATGCAGCAGCATTGCAACTTC
GACGTGAAGCCGGAGATGCAGCCGTGGCCAACCATGCCCTACGACGACGTCCACCACCCGCTGCTGCAGCCGCTCTGCAG
CGCCACCGCGCAGAGCTCCGCCACGTCCGTGCCGACACCTACGCA------GCAGCAGCAGCTTCCCGCGGCAGCCGCGC
ACTTGTCGGCCACAGCGCTGCTACAAAAGGCGGCGCAGATGGGCGCCACCATCGGCGGGGCCGGCGCTGGCGGGGCGGGA
GTGCACTACACCCAGATGGCCGGCTCGGCGACCAGCGCGACCGGCAGCGCCACGTTCGGGCTCGGCCTCTCGTGCCTCAG
CAACCAGCAGATGATGAGCCTCGCCAGGACCGCCTCCCAAGGCCGGAGCGGCGAGGAAGGCGGCGCCTCGGGAGGGGCCA
ACGACGGCATGACCAGGGACTTCCTGGGGCTGCGCGCCTTCTCGCACCGCGACATCCTCGGCCTCGCCGGCTTTGACTCG
TCGTGCATGGGCACCGCCGTGAACACGGGCAGCAACAACACCAACATGGCGCCCTGCTACGAGCCACAGCAACAAGGACA
GCCGCAGCCGCAGC------------AGCAGCAGAGCAGCAACGAGCCGTGGCATGGCATGGGTAGCCATGCATAGCTAG
CCATGATGATAGTTGCATGGTCGCATCTGATCACCGCAGAGCACTGCTTGCTGCTACCCTCTACATCA-----GCAGGGG
ATGCGTTTTGAACTGGGTAATCTCTCTCCTCTCTCTCCGTCTCGCACT------------------------CTCGTGAT
CTTGCAAGTTAAGAAAGCTTTGGAGTTTTTTGTGG---GTAGAAGCCAACTGTAAGGTAAAGCTGGGATCAACGAAAAGC
TACGTGAAAATAATACATGCATCCGTCGTCTCT-----------------------TTTCTCTCTCTCTGGCACTCAAC-
--TGGTCAGCTGCATTGCCTACATACG----TATCTACTGTCTCCGTTTGCTGGGCAATATATCAGTGTCAAAAAAGTCT
TATATTTTGAGACAGAGAGAAGACAAGAAGTACACACTCCCTCCGTTCCATATGTAGTACGTATAATTTTTTTGAAAAAT
CAAACCTCACAAATTTTGATTAAGTTTGTGAAGAATGTTTACATCTAACACACCAAACATATATTATTAAATTCATCATA
AGATGTAATTTCATATTTTATATTTTTGATATGGTAGATATAAATAGTTTTCTC--AATAAACTTAATTAGTCAAAGTAT
AAAAAATCTATATACACTACATTATGGAATGAAGATAGTACATATCTCATGGCCACACACTACAAGTTTTATATTCTTTG
ACTTGGGCAAAACAAAGT-TTCTCTATCTTACTAAGGTACACGTTGATTGGTATATGTATATGGAAAATCCAGATATACA
CCCCCGTTTATACTTTTTCGATAAACGGTGGATTTTATTGGCTTAAAATGGAGCATCAAGAGGATACAAACACAAAGAGC
ATACACCCGGTCTCTGCATAGTTAAGATGAGATCCGTGATGGGCAAACAACAACAATGACAATATCCCCACCAGCATATC
ATGACACCACACAAGCCACGAGGTTCTTCAACATTTACTAAACAAGCAACATTTAATATGTAACAAAGGGAGTACTTTGC
TTCTTCGAAAAAAAAAGAGAG
>chr3B_1
TACATTTGTAAGACAAAGGAAAAGACAGAAAGCTCAACATCGGTGCAGCATTGCTAGCAGCGTGGTGTGT---------C
GCTATGGTTCACAATGTTATATACAGTCCGTGATTCTAAAA---TTGTTTCCACTTCTACTAGTGTACTTAATTATCATC
ATCTTAAATAAAGTACGTATATAATTACAAGAAGGAGAGAAGAGCTGCCTTCTAT------TTTTATTTTTA-------T
TTTGCTCTTGCATTTGCCCCATAGGCCATAGTTTTTTTAGCATACCCATAGGCCATAGCTAGAGAGAGCAT---------
-GAAGGGAAGAAGGCTCAACTGCTGATTTGGTCAGGA-TTTT-CTTCTTTTTGGCCCCTAAAGCAAGGAAGCAGATAAAG
GAGGGAGAGGAGGGGTTTGGTTTGGTCATTTGCTCAGCCTTCTTCTCCCCCTCCCCCTC------------CCCCTATGG
CTGCCAGCACTGTGGCCTCTCCCTTTTTCTCTCTCATGGCGGCCGTCTTCTTCCAGCCTGCATAGCTCCTGATCTCCGTT
CC--------------------------------TCTCTCTCTCTCTCTCTCCGCACTGCCAGCCAGCTCTTGAATCCTT
GCTGTAGTGTTCTACGCTTGTACTGCTGCAGAGAAAGAAAGTAGAGAGAGAAAGAA---GAAGAAAGGAGAGAAGAGGGA
AGGGAGAGAATCTGAATTTCCTTTGCAGTCATTGA-----CCAACCCCAGTTTCCCCTTGTTTGTCCCCTTCCCCTCCCT
CCTTGATACCTGTGTTATTCCCTGAGCTGCT---------GCCGCCGCCTGAGGAGAGCAAGTGGCTCTCTGAACTCTGA
ACTCTCTCCTCTTGTCAC-----TCTTGGCTTGCCCCCATCCTG---TTCCTCCTCCTCCGTTCTTCAG--TTAATGCCC
CCTCTGTAGCAGCATCAAATTTATTGCCACCCCCTCCTTGGGCCTTGGCTAAGTTGTGTTTAGA-------GGGAGAGAG
AGATAACATAAGGCCTGAATCAAACCCCTAGCACTACAAGTTTGTCGC-TTATGTATCATCACCACCTTCAGCAGCAGCA
GCAGC---GTGGAGAATCGGAAGCAGCGGCATCGGCAGATCAGGACAGCAGCATGTCCAACCTCACCACCTCCGCCTCCG
CTTTCGCCAACCCTCCTCCTCCTCC------AACCCCGGCCTCCAACAAGCGCAAGCGAAGCCTACCCGGCAACCCCGGT
AGGTTCTTCTCCTCGGTTTAATTTCTTGTTTGTTTTCTCTCAAGTCAAGCGAT---CGAGGACAAGTTGCTGGACTGGAC
TGATGCGCATGTTTGTATCTGGAGGATCGTTGCATCATGTTACTAATCTTTGTCCGCGCGTGTTTTTCATGGAAATGGAA
CCCAAGACCCAGAGTCGGAGGTGGTTGCGCTGTCTCCGGCGACGCTGATGGCGACGAACCGGTTCCTGTGCGAGATCTGC
GGCAAGGGGTTCCAGCGCGACCAGAACCTGCAGCTGCACCGGCGCGGGCACAACCTGCCATGGAAGCTGAAGCAGCGCGG
GAGCAAGGAGGTGGTGCGGAAGAAGGTGTACATCTGCCCGGAGGCGTCGTGCGTGCACCACGACCCGTCGCGCGCGCTGG
GCGACCTCACCGGGATCAAGAAGCACTTCTTCCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAG
TACGCCGTGCAGTCGGACTGGAAGGCGCACTCCAAGATCTGCGGCACCCGCGAGTACAAGTGCGACTGCGGGACCGTCTT
CTCCAGGTTCTTATCCGTTTCTTCCAATCTTGATCCACCTCTTCTACTATCTA---------CCATGCATCATGAAAGCT
TTCTTCCCTGCAGTCTTGTTGATTTCTCGTCACTATATATTCTTGTGTCTTGGCGCGC-AACCTAGCGAGTGCACTGCCT
AGAAATTACTAG---AGTAGAATTTAAGTAGAGGATCGTGAACATTAGGGCGCC-----ATTAATCTGAGAGAAGGAAGG
AACTCATTGTGATTTGTGTTGGCGAGTCAGGCCAGGATGAGGC----AACGCAGAAGAAGCATGGATGGATGCAAAGATG
GACCACTTTTACGGCCCGGCCGGGGGTCCTCTTTCTTTTTGTTTCGGCCATG-----GATGAGATGAGCGGCTGTGCAGC
TCGTGTGGAAG-----GAGAG-----AGATGCCGTGATGATGA---GGATCGAGCTTTGGGAGACGAGAATTCAGACATG
TGAATCTCTTTGCAGAGCTGAGCTGCCTTTCCATCTCACTCCTCCTGCC-TAGCCTAATTGCCTATGCATGCTTACACTA
TTCCCTCCGTGCTGTCACTTCCATGCGTCCTCTCCTCCCTGATTCTCTCTCTCTCTCTCTCCCTCGGAGCTCACACCGCA
CGGCACGGCAGCGTCGCGTACCATATGA-------------------CAAATGAACAAAGACTCAGGAGAAAGTTTTAGC
TTTACCTTTTCTCTTGCCCTTCCTTCTCATGCTGCAT----TTCTTCTGATGATGGCTTTCTTTGTTGCACTGCATTGCA
TGCAGACGGGACAGCTTCATCACGCACCGGGCCTTCTGCGACGCGCTCACCGAGGAGAGCAACAAGGCCATCAGCGGGGG
CGGCCTGCCACTGCCACCCATCGCGCACGCCCAGCACCACGCCATGCTCTATTCGCCGCACGATCTGATGCAGCAGCAGC
ACCACCACCACCACCAGGAGCTCGCCGCGTTCCAGGACCAG------CATCACCAGGTCTTGCAGCAGCATTGCAACTTC
GACGTGAAGCCGGAGATGCAGCCGTGGCCAACCATGCCCTACGACGACGTCCACCACCCGCTGCTGCAGCCGCTCTGCAG
CGCCACCGCGCAGAGCTCCGCCACGTCCGTGCCGACGCCTACGCA------GCAGCAGCAGCTTCCCGCGGCAGCCGCGC
ACCTGTCGGCCACAGCGCTGCTACAAAAGGCGGCGCAGATGGGCGCGACCATCGGCGGGGCCGGCGCTGGCGGGGCGGGA
GTGCACTACACCCAGATGGCCGGCTCGGCGACCAGCGCGACCGGCAGCGCCACCTTCGGGCTCGGCCTCTCGTGCCTCAG
CAACCAGCAGATGATGAGCCTCGCCAGGACCGCCTCCCAAGGCCGGAGCGGCGAGGAAGGCGTCGCCTCGGGAGGGGCCA
ACGACGGCATGACCAGGGACTTCCTGGGGCTGCGCGCCTTCTCGCACCGCGACATCCTCGGCCTCGCCGGCTTTGACTCG
TCGTGCATGGGCGCCGCCGTGAACACGGCCGGCAACAACACCAACATGGCGCCCTGCTACGAGCCAAAGCAACAAGGACA
GCCGCC------GC------------AGCAGCAGAACAGCAACGAGCCATGGCATGGCATGGGTAGC----CATAGCTAG
CCATGATGATAGTTGCATGGTCGCTTCTGATCACCGCAGAGCACTGCTTGCTGCTACCCTCTAGATCAGCGCTGCAGGAG
ATGCGTTTTGAACTGGGTAATCTCTCTCTCCC-------TCTCGCACT------------------------CTCGTGAT
CTTGCAAGTTAAGCAAGCTTTGGAGATTTTTTGTGGGAGTAGAAGCCAACTGTAAGGTAAAGCTGGGATCAACGAAAAGC
TACGTGAAAATAATACATGCATCCGTCGTCTCT-----------------------T--CTCTCTCTTTGGCACTCAACA
ATTGGTCAGCTGCATTGCCTACATACGTAAATATCTACTGTCTCCGTTTGCTGGGCAATATATCAGTGTCAAAAAAGTCT
TATATTTTGAGACAGAGAGAAG--------TACACACTCCCTCCCTTCCATATGTAGTTCGTATAATTTTTTTGAAAAAT
CAAACCTCACAAATTTTGATTACGTTTGTGAAGAACATTTACATCTAACACACCAAACATATATCATTAAATTCATCATA
AGACGTAGTTTTATATTTTATATTTTTGATATGGTAGATATAAATAGTTTTTTTAAAATAAACTTAATTAGTCAAAGTAT
----------TATACGCTACATTATGGATCGGATGAAGTACATGTCTCATGGCCACACACTACAAGTCTTATATTCTCTG
ACTTGGGCAGAACAAAGTTTTCTCTATCTAACTAAGGTACACGTTGATCGGTATATGTACAAGGAAAATCCAGATATAGA
GCCCCCGTTTA---------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TAATAAACCAGCAAGATTTAATATGTAACAAAGGGAGTACTTTGC
TTCTTCGGGGGAAAAAAGAG-
>chr3A_1
TACATTTGTAAGACAAAGGAAAAGACAGAAAGCTCAACATCGGTGCAGCATTGCTCCCAGCG------------------
----TGGTTCACAATGTTATATACAGTCCGTGATTTTAGAA---TAGTTTCCACTTCTACTACTGTACTTTATTATCATC
ATCTTAAATAAA----GTATATAATTACAAGAAGGACAGAAGAGTTGCCTTGTATTTTTAATTTTATTTCAA-------T
TTTGCTCTTGCATTTGCCCCATAGGCCATAG---------------------------CTAGAGAGAGCATGAAGGGAAG
GGAAGGGAAGAAGGCTCAACTGCTGATTTGGTCAGGA-TTTTTCTTCTTTTTGGCCCCTAAAGCAAGGAAGCAGATAAAG
GAGGGAGAGGAGGGGTTTGGTTTGGTCGTTTGCTAAGCCTTCTTCTCCCCCTCCCCTCCCCCTCCCTCTAGCCCCTATGG
CTGCCAGCACTGTGGCCTCTCC-TTTTTCTCTCTCATGGGGGCCGTCATCTTCCAGCTTGCATAGCTCCTGATCTCCGTT
CC--------------------------------TCTCTCTCTCTCCCCCCT-GCACTGCCAGCCAGCTCTTGAATCCTT
GCTGTAGTGTTCTACGCTTGTACTGCTGCAGGGAAAGAAAGTAGAGAGAGAAACAA---GAAGAAAGGAGAGAAGAGGGA
AGGGAGAGAATCTGAATTTGCTTTCCAGTCATTGACCAACCCAACCCCAGTTTCCCCTTGTTTGTCCCCTTCCCCTCCAT
CCTTGATACCTGTGCTATTCCCTGAGCTGCCGCCGCCGCCGCCGCCGCCTGAGGAGAGGGAGTGGCTCTCTGAACTCT--
-----CTCCTTTTGTCACTCCTGTCTTGCCTTGCCCCCATCCTGTTCTTCCTCCTCCTCCTCCGTTCTTCATTAATGCCC
CCTCTGTGGCAGCATCAAATTTATTGCCACCCCTTCCTTGGGCCTTGGCTAAGTTGTGTTTAGACTTTAGAGGGAGAGAG
AGATAACCTAAGGCCTGAATCAAATCCCTAGCACTACAAGTTTGCCGCTTTATGTATCATCACCATCTTCAGCAGCAGCA
GCAGCAGCGTGGAGAAGCGGAAGCGGCAGATCAG---GATCAGGACAGCAGCATGTCCAACCTCACCACCTCCGCCTCCG
CTTCCGCCAAACCTCCTCCTCCTCCTCCCCCAACCCCGGCCTCCAACAAGCGCAAGCGAAGCCTACCCGGCAACCCCGGT
AGGTCCTTGTCCTCGGTTTAATTTCTTGTTTGTTTTC-------TCACAATTCTAGTGACGACGTGTTGCTGGACTGGAC
TGATGCGCATGTCTGTATCTGGAGGATCGTTG---CATGTTACTAATCTTTGTCCGCGCGTGTTTTTCATGGAAACGGAA
CCCAAGACCCAGAGTCGGAGGTGGTTGCGCTGTCTCCGGCGACGCTGATGGCGACGAACCGGTTCCTGTGTGAGATCTGC
GGCAAGGGGTTCCAGCGCGACCAGAACCTGCAGCTGCACCGGCGCGGGCACAACCTGCCATGGAAGCTGAAGCAGCGCGG
GAGCAAGGAGGTGGTGCGGAAGAAGGTGTACATCTGCCCGGAGGCGTCGTGCGTGCACCACGACCCGTCGCGCGCGCTGG
GCGACCTCACCGGGATCAAGAAGCACTTCTTCCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAG
TACGCCGTGCAGTCCGACTGGAAGGCGCACTCCAAGATCTGCGGCACCCGCGAGTACAAGTGCGACTGCGGGACCGTCTT
CTCCAGGTTCTTATCCCTTTCTTCCAATCTCGATCCACCTCTTGTGCTTCTACTATGCTATGCTATGCATCATGAAAGCT
TTCTTCCCTGCAGTCTTGCTGATTTCTCGTTACTATATATTCTTGTGCCTTGGCAACCTAACCTAGCGAGTGCACTGCCT
ACAAATTACTACTACAGTAGAATTCAAGTAGAGGATCGTCAACATTA------------ATTAATCTGAGAGAAGGAAGG
AACTCATTGTGATTTGCGTTGGCGAGTCAGGCC-AGATGGGGCAACGAACGCAGAAGAGGCATGGACGGATGCAAAGATG
GA------------------CGGGGGTCCTCTTTCTTTTTGTTTCGGACATGGATGAGATGAGATGAGCGGCTGTGCAGC
TCGTGTGGAAG-----GAGAGGAGAGAGATGCTGTGATGATGATGAGGATCGAGCTTTGGGAGACGAGAATTCAGACATG
TGAATCTCTTTGCAGAGCTGAGCTGCCTTTCCATCTCACTCCTCCTGCCTTAGCCTAATTGCCTATGCATGCTCACACTA
TTCTCTCCGTGCTGTCACTTCCATGCGTCCTCTCCTCCCTGATTCTCTCT----CTCTCTCTCTCGGAGCTCACACCGCA
CGGCACGGCAGCGTCGCATGCCATATGACAACAAATGAACAAAGAATCAAATGAACAAAGAATCAGGGGAAAGTTTTAGC
CTTACCTTTTCTCTTGCCCTTCCTTCTCGTGCTGCAT----TTCTTCTTCTGATGGCTTTCTTTGTTGCACTGCATTGCA
TGCAGGCGGGACAGCTTCATCACGCACCGGGCCTTCTGCGACGCGCTCACCGAGGAGAGCAACAAGGCCATCAGCGGGGG
CGGCCTGCCACTGCCACCCATCGCGCACGCCCAGCACCACGCCATGCTCTATTCGCCGCACGATCTGATGCAGCAG----
-----CACCACCACCAGGAGCTCGCCGCGTTCCAGGACCAC------CAGCACCAGGTCATGCAGCAGAATTGCAACTTC
GACGTGAAGCCGGAGATGCAGCCGTGGCCAACCATGCCCTACGACGACGTCCACCACCCGCTGCTGCAGCCGCTCTGCAG
CGCCACCGCGCAGAGCTCCGCCACGTCCGTGCCGACGCCTACGCACCACCAGCAGCAGCAGCTTCCCGCGGCAGCCGCGC
ACCTGTCGGCCACAGCGCTCCTACAGAAGGCGGCGCAGATGGGCGCCACCATCGGCGGGGCCGGCGCTGGCGGGGCGGGA
GTGCACTACACCCAGATGGCCGGCTCGGCGACCAGCGCGACCGGCAGCGCCACGTTCGGGCTCGGCCTCTCGTGCCTCAG
CAACCAGCAGATGATGAGCCTCGCCAGGACCGCCTCCCAGGGCCGGAGCGGCGAGGAAGGCGGCGCCTCGGGAGGGGCCA
ACGACGGCATGACCAGGGACTTCCTGGGGCTGCGCGCCTTCTCGCACCGCGACATCCTCGGCCTCGCCGGCTTTGACTCG
TCGTGCATGGGCGCCGCCGTGAACACGGCCGGCAACAACACCAACATGGCTCCCTGCTACGAGCCACAGCAACAAGGACA
GCCGCA------GCCGCAGCCGCCGCAGCAGCAGATCAGCAACGAGCCGTGGCATGGCATGGGTAGC----CATAGCTAG
CCATGATGATAGTTGCATGGTCGCTTCTGATCACCGCAGAGCACTGCTTGCTGCTACCCTCTAGATCAGCAA-----GGG
ATGCGTTTTGAACTGGGTAATCTCTCTCTTTC-------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCACTCGTGAT
CTTGCAAGCTAAGCAAGCTTTGGAGTTTTTTGTGG---GTAGAAGCCAACTGTAAGGTAAA-CTGGGATCAACGAAAAGC
TACGTGAAAATAATACATGCATCCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT--CTCTCTCTCTGGCACTCAACA
ACTGGTCAGCTGCATTGCCTACGTAC----ATATCTACTGTCTCCGTTTGCTGGGCAATATATCAGTGTGAAAACAGTCT
TATATTTTGAGACAGAGAGAAG--------TACACACTCCCTCCGATCCATATGTAGTGCCTATAATATTTTTCAAAAAT
CAAACCTCGCAAATTTTTATTAAGTTTGTGAAGAACATTTACATCTAATACACCAAACATATATCACTAAATTCATCATA
AGATGTAGTCTCATATT-------------ATGGTGGATATAGATAGTTTTCTC--AATAAACTTAATTAGTTAAAGTAT
AAAAAATCTATATGCATTACATTATGAAATGGAGTGAGTACATGTCTCATGGCCACACACTACAAGTTTTATATTCTCTG
CCTTGGGTAAAAGAAAGTTTTCTCTATCTGACTAAGGTACACGTCGATCGGTATATGTATAAGGAAAATCCAGATATACA
CCCCCCTTTAA---------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TACTAAACCAGCAACATTTAATATGTAACAAAGGGAGTACTTTGC
TTCTTCAAAAAAAA-------
>SNPs
----------------------------------------------------------------------SSSSSSSSS-
-----------------------------------------SSS------------------------------------
------------------------------------------S----------S-----------------SSSSSSSS-
--------------------------------------------------------------------------------
-----------------------------S-------S---S--------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-------------------S------------
---------------S----------------------------------------SSS---------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
-----------------------------S--------------------------------------------------
-----------------------------------S--------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------S-------------S------S---------------S----------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
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-------------------S-----------------------------S---S-------------------S------
--------------------------------------------------------------S-----------------
--------------------------------------------------SSSSSSSSS---------------------
--S-----------------------------------------------------------------------------
----------------------------------------------------------------S---------------
-----------SSSSS----------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
---------------S----------------------------------------------------------------
-------------------------------------SSSS---------------S-----------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
-S---------------------------------------SSSSSS---------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------S---------------S-S-------------------------------------------------
------SSSSSS-----------------------S-------------------------------SSSS---------
------------------------S--------------------------------------S----------------
----------------------------S--SSSSSSSS-----------------------------------------
-------------S------------------------------------------------------------------
---------------------------------------------------------SS---------------------
--------------------------------------------------------------------------------
----------------------SSSSSSSS----------------------------S---------------------
-----------------------------------SS---------------------------S---------------
-------S------------------------------------------------------------------------
-------------------------------S--SS-------S---------------------------------S--
-----------------------------S------------------S------------S------------------
-----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S------------------------------------
----------------SSSSS
>forward_1070
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----------AGGCCTGAATCAAACCCCTG--------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>reverse_2846
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ACCATCACCAGGTCATGCAG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>forward_2256
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CAGC
TCGTGTGGAAGGAGAT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>reverse_3391
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AGCAACAACACCAACATGGC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>forward_2847
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CGTTCCAGGACCACCATCAC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>reverse_4396
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AGAGC
ATACACCCGGTCTCT-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
