Multiple sequence alignment - TraesCS3D01G200900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G200900 chr3D 100.000 2105 0 0 1 2105 235644353 235646457 0.000000e+00 3888
1 TraesCS3D01G200900 chr3D 96.274 1181 35 6 805 1978 323520783 323521961 0.000000e+00 1929
2 TraesCS3D01G200900 chr3D 92.920 226 16 0 10 235 231204635 231204410 1.560000e-86 329
3 TraesCS3D01G200900 chr3D 92.444 225 17 0 10 234 247452553 247452777 2.610000e-84 322
4 TraesCS3D01G200900 chr3D 92.760 221 16 0 10 230 247306084 247306304 9.370000e-84 320
5 TraesCS3D01G200900 chr3D 91.630 227 19 0 7 233 199138192 199138418 4.360000e-82 315
6 TraesCS3D01G200900 chr3D 90.678 236 21 1 1 235 211061059 211061294 1.570000e-81 313
7 TraesCS3D01G200900 chr3D 91.964 224 17 1 12 235 249234867 249235089 1.570000e-81 313
8 TraesCS3D01G200900 chr3D 90.295 237 21 2 1 236 275525739 275525974 2.030000e-80 309
9 TraesCS3D01G200900 chr3D 90.708 226 20 1 10 235 247099337 247099561 1.220000e-77 300
10 TraesCS3D01G200900 chr3D 89.451 237 21 4 1 235 247296043 247296277 1.580000e-76 296
11 TraesCS3D01G200900 chr5D 94.586 1847 60 11 273 2105 503297130 503298950 0.000000e+00 2820
12 TraesCS3D01G200900 chr5D 94.264 1848 63 18 273 2105 6270752 6268933 0.000000e+00 2785
13 TraesCS3D01G200900 chr5D 93.218 1843 65 18 273 2105 6171685 6169893 0.000000e+00 2656
14 TraesCS3D01G200900 chr5D 95.634 1214 42 8 901 2105 329162135 329160924 0.000000e+00 1938
15 TraesCS3D01G200900 chr5D 89.796 196 9 3 273 467 512414499 512414684 7.500000e-60 241
16 TraesCS3D01G200900 chr1D 94.423 1847 61 12 273 2105 254440265 254442083 0.000000e+00 2802
17 TraesCS3D01G200900 chr1D 92.228 1158 39 13 273 1426 51866701 51865591 0.000000e+00 1592
18 TraesCS3D01G200900 chr1D 89.796 196 9 3 273 467 491423165 491422980 7.500000e-60 241
19 TraesCS3D01G200900 chr2D 94.156 1848 60 15 273 2105 638429660 638431474 0.000000e+00 2771
20 TraesCS3D01G200900 chr4B 93.920 1842 69 13 273 2105 308674544 308672737 0.000000e+00 2741
21 TraesCS3D01G200900 chr4D 93.590 1841 70 14 273 2105 19873739 19875539 0.000000e+00 2702
22 TraesCS3D01G200900 chr4A 94.609 1688 66 8 427 2105 309484656 309482985 0.000000e+00 2590
23 TraesCS3D01G200900 chr7D 96.444 225 8 0 659 883 525679146 525678922 2.550000e-99 372
24 TraesCS3D01G200900 chr2A 88.785 214 12 4 273 484 235945454 235945251 3.470000e-63 252
25 TraesCS3D01G200900 chr3B 94.262 122 7 0 273 394 796324381 796324502 9.920000e-44 187
26 TraesCS3D01G200900 chr3B 94.262 122 7 0 273 394 796325789 796325668 9.920000e-44 187
27 TraesCS3D01G200900 chr3B 94.262 122 7 0 273 394 796327191 796327312 9.920000e-44 187
28 TraesCS3D01G200900 chr3A 95.763 118 2 2 1991 2105 431365627 431365510 9.920000e-44 187
29 TraesCS3D01G200900 chr7A 98.214 56 1 0 396 451 692511076 692511131 4.780000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G200900 chr3D 235644353 235646457 2104 False 3888 3888 100.000 1 2105 1 chr3D.!!$F3 2104
1 TraesCS3D01G200900 chr3D 323520783 323521961 1178 False 1929 1929 96.274 805 1978 1 chr3D.!!$F10 1173
2 TraesCS3D01G200900 chr5D 503297130 503298950 1820 False 2820 2820 94.586 273 2105 1 chr5D.!!$F1 1832
3 TraesCS3D01G200900 chr5D 6268933 6270752 1819 True 2785 2785 94.264 273 2105 1 chr5D.!!$R2 1832
4 TraesCS3D01G200900 chr5D 6169893 6171685 1792 True 2656 2656 93.218 273 2105 1 chr5D.!!$R1 1832
5 TraesCS3D01G200900 chr5D 329160924 329162135 1211 True 1938 1938 95.634 901 2105 1 chr5D.!!$R3 1204
6 TraesCS3D01G200900 chr1D 254440265 254442083 1818 False 2802 2802 94.423 273 2105 1 chr1D.!!$F1 1832
7 TraesCS3D01G200900 chr1D 51865591 51866701 1110 True 1592 1592 92.228 273 1426 1 chr1D.!!$R1 1153
8 TraesCS3D01G200900 chr2D 638429660 638431474 1814 False 2771 2771 94.156 273 2105 1 chr2D.!!$F1 1832
9 TraesCS3D01G200900 chr4B 308672737 308674544 1807 True 2741 2741 93.920 273 2105 1 chr4B.!!$R1 1832
10 TraesCS3D01G200900 chr4D 19873739 19875539 1800 False 2702 2702 93.590 273 2105 1 chr4D.!!$F1 1832
11 TraesCS3D01G200900 chr4A 309482985 309484656 1671 True 2590 2590 94.609 427 2105 1 chr4A.!!$R1 1678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.034896 CACGTGGGGTTAAGACTGCT 59.965 55.0 7.95 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 1761 3.574826 CACTAGTAGTATGGGGAAGGAGC 59.425 52.174 1.57 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.069869 CACAAGGGTGGTGCTCTG 57.930 61.111 0.00 0.00 41.45 3.35
19 20 1.149174 CACAAGGGTGGTGCTCTGT 59.851 57.895 0.00 0.00 41.45 3.41
20 21 0.396435 CACAAGGGTGGTGCTCTGTA 59.604 55.000 0.00 0.00 41.45 2.74
21 22 1.136828 ACAAGGGTGGTGCTCTGTAA 58.863 50.000 0.00 0.00 0.00 2.41
22 23 1.072331 ACAAGGGTGGTGCTCTGTAAG 59.928 52.381 0.00 0.00 0.00 2.34
23 24 1.072331 CAAGGGTGGTGCTCTGTAAGT 59.928 52.381 0.00 0.00 33.76 2.24
24 25 0.977395 AGGGTGGTGCTCTGTAAGTC 59.023 55.000 0.00 0.00 33.76 3.01
25 26 0.389948 GGGTGGTGCTCTGTAAGTCG 60.390 60.000 0.00 0.00 33.76 4.18
26 27 0.317479 GGTGGTGCTCTGTAAGTCGT 59.683 55.000 0.00 0.00 33.76 4.34
27 28 1.669211 GGTGGTGCTCTGTAAGTCGTC 60.669 57.143 0.00 0.00 33.76 4.20
28 29 0.601558 TGGTGCTCTGTAAGTCGTCC 59.398 55.000 0.00 0.00 33.76 4.79
29 30 0.108756 GGTGCTCTGTAAGTCGTCCC 60.109 60.000 0.00 0.00 33.76 4.46
30 31 0.456312 GTGCTCTGTAAGTCGTCCCG 60.456 60.000 0.00 0.00 33.76 5.14
31 32 1.139095 GCTCTGTAAGTCGTCCCGG 59.861 63.158 0.00 0.00 33.76 5.73
32 33 1.139095 CTCTGTAAGTCGTCCCGGC 59.861 63.158 0.00 0.00 33.76 6.13
33 34 1.592400 CTCTGTAAGTCGTCCCGGCA 61.592 60.000 0.00 0.00 32.13 5.69
34 35 1.180456 TCTGTAAGTCGTCCCGGCAA 61.180 55.000 0.00 0.00 32.13 4.52
35 36 0.736325 CTGTAAGTCGTCCCGGCAAG 60.736 60.000 0.00 0.00 32.13 4.01
36 37 1.447314 GTAAGTCGTCCCGGCAAGG 60.447 63.158 0.00 0.00 40.63 3.61
37 38 1.607178 TAAGTCGTCCCGGCAAGGA 60.607 57.895 0.00 0.00 45.00 3.36
38 39 0.974010 TAAGTCGTCCCGGCAAGGAT 60.974 55.000 0.00 0.00 45.00 3.24
39 40 2.202892 GTCGTCCCGGCAAGGATC 60.203 66.667 0.00 0.00 45.00 3.36
40 41 2.363795 TCGTCCCGGCAAGGATCT 60.364 61.111 0.00 0.00 45.00 2.75
41 42 1.987855 TCGTCCCGGCAAGGATCTT 60.988 57.895 0.00 0.00 45.00 2.40
42 43 1.815421 CGTCCCGGCAAGGATCTTG 60.815 63.158 0.00 3.50 45.00 3.02
43 44 2.115291 GTCCCGGCAAGGATCTTGC 61.115 63.158 20.54 20.54 45.00 4.01
44 45 2.045045 CCCGGCAAGGATCTTGCA 60.045 61.111 26.94 0.00 46.58 4.08
45 46 2.117156 CCCGGCAAGGATCTTGCAG 61.117 63.158 26.94 23.58 46.58 4.41
46 47 3.506108 CGGCAAGGATCTTGCAGG 58.494 61.111 26.94 17.35 46.58 4.85
47 48 2.117156 CGGCAAGGATCTTGCAGGG 61.117 63.158 26.94 15.39 46.58 4.45
48 49 1.755783 GGCAAGGATCTTGCAGGGG 60.756 63.158 26.94 0.00 46.58 4.79
49 50 1.000396 GCAAGGATCTTGCAGGGGT 60.000 57.895 22.85 0.00 44.34 4.95
50 51 1.034292 GCAAGGATCTTGCAGGGGTC 61.034 60.000 22.85 0.00 44.34 4.46
51 52 0.622665 CAAGGATCTTGCAGGGGTCT 59.377 55.000 0.00 0.00 0.00 3.85
52 53 1.839994 CAAGGATCTTGCAGGGGTCTA 59.160 52.381 0.00 0.00 0.00 2.59
53 54 1.799933 AGGATCTTGCAGGGGTCTAG 58.200 55.000 0.00 0.00 0.00 2.43
54 55 0.107643 GGATCTTGCAGGGGTCTAGC 59.892 60.000 0.00 0.00 0.00 3.42
55 56 0.833287 GATCTTGCAGGGGTCTAGCA 59.167 55.000 0.00 0.00 36.32 3.49
56 57 1.210478 GATCTTGCAGGGGTCTAGCAA 59.790 52.381 0.00 0.00 45.07 3.91
58 59 1.002134 TTGCAGGGGTCTAGCAAGC 60.002 57.895 0.00 0.00 42.71 4.01
59 60 2.124529 GCAGGGGTCTAGCAAGCC 60.125 66.667 0.00 0.00 36.02 4.35
60 61 2.187946 CAGGGGTCTAGCAAGCCG 59.812 66.667 0.00 0.00 37.70 5.52
61 62 3.787001 AGGGGTCTAGCAAGCCGC 61.787 66.667 0.00 0.00 37.70 6.53
62 63 4.858680 GGGGTCTAGCAAGCCGCC 62.859 72.222 0.00 0.00 44.04 6.13
63 64 4.858680 GGGTCTAGCAAGCCGCCC 62.859 72.222 0.00 0.00 44.04 6.13
64 65 4.858680 GGTCTAGCAAGCCGCCCC 62.859 72.222 0.00 0.00 44.04 5.80
97 98 3.003763 GGGGTCCGAGCTTGTCCT 61.004 66.667 0.00 0.00 0.00 3.85
98 99 2.593956 GGGGTCCGAGCTTGTCCTT 61.594 63.158 0.00 0.00 0.00 3.36
99 100 1.375326 GGGTCCGAGCTTGTCCTTT 59.625 57.895 0.00 0.00 0.00 3.11
100 101 0.955919 GGGTCCGAGCTTGTCCTTTG 60.956 60.000 0.00 0.00 0.00 2.77
101 102 0.250338 GGTCCGAGCTTGTCCTTTGT 60.250 55.000 0.00 0.00 0.00 2.83
102 103 1.594331 GTCCGAGCTTGTCCTTTGTT 58.406 50.000 0.00 0.00 0.00 2.83
103 104 1.531578 GTCCGAGCTTGTCCTTTGTTC 59.468 52.381 0.00 0.00 0.00 3.18
104 105 1.416401 TCCGAGCTTGTCCTTTGTTCT 59.584 47.619 0.00 0.00 0.00 3.01
105 106 1.801178 CCGAGCTTGTCCTTTGTTCTC 59.199 52.381 0.00 0.00 0.00 2.87
106 107 2.548920 CCGAGCTTGTCCTTTGTTCTCT 60.549 50.000 0.00 0.00 0.00 3.10
107 108 2.478134 CGAGCTTGTCCTTTGTTCTCTG 59.522 50.000 0.00 0.00 0.00 3.35
108 109 3.471680 GAGCTTGTCCTTTGTTCTCTGT 58.528 45.455 0.00 0.00 0.00 3.41
109 110 3.471680 AGCTTGTCCTTTGTTCTCTGTC 58.528 45.455 0.00 0.00 0.00 3.51
110 111 3.135530 AGCTTGTCCTTTGTTCTCTGTCT 59.864 43.478 0.00 0.00 0.00 3.41
111 112 3.496507 GCTTGTCCTTTGTTCTCTGTCTC 59.503 47.826 0.00 0.00 0.00 3.36
112 113 3.371102 TGTCCTTTGTTCTCTGTCTCG 57.629 47.619 0.00 0.00 0.00 4.04
113 114 2.956333 TGTCCTTTGTTCTCTGTCTCGA 59.044 45.455 0.00 0.00 0.00 4.04
114 115 3.243434 TGTCCTTTGTTCTCTGTCTCGAC 60.243 47.826 0.00 0.00 0.00 4.20
115 116 3.004944 GTCCTTTGTTCTCTGTCTCGACT 59.995 47.826 0.00 0.00 0.00 4.18
116 117 3.004839 TCCTTTGTTCTCTGTCTCGACTG 59.995 47.826 0.00 0.00 0.00 3.51
117 118 3.243569 CCTTTGTTCTCTGTCTCGACTGT 60.244 47.826 0.00 0.00 0.00 3.55
118 119 4.363999 CTTTGTTCTCTGTCTCGACTGTT 58.636 43.478 0.00 0.00 0.00 3.16
119 120 3.627732 TGTTCTCTGTCTCGACTGTTC 57.372 47.619 0.00 0.00 0.00 3.18
120 121 3.215151 TGTTCTCTGTCTCGACTGTTCT 58.785 45.455 0.00 0.00 0.00 3.01
121 122 3.632604 TGTTCTCTGTCTCGACTGTTCTT 59.367 43.478 0.00 0.00 0.00 2.52
122 123 4.098044 TGTTCTCTGTCTCGACTGTTCTTT 59.902 41.667 0.00 0.00 0.00 2.52
123 124 4.920640 TCTCTGTCTCGACTGTTCTTTT 57.079 40.909 0.00 0.00 0.00 2.27
124 125 5.263968 TCTCTGTCTCGACTGTTCTTTTT 57.736 39.130 0.00 0.00 0.00 1.94
142 143 3.622166 TTTTGTCTTCTATCGGTCCCC 57.378 47.619 0.00 0.00 0.00 4.81
143 144 2.241281 TTGTCTTCTATCGGTCCCCA 57.759 50.000 0.00 0.00 0.00 4.96
144 145 2.241281 TGTCTTCTATCGGTCCCCAA 57.759 50.000 0.00 0.00 0.00 4.12
145 146 2.759355 TGTCTTCTATCGGTCCCCAAT 58.241 47.619 0.00 0.00 0.00 3.16
146 147 2.698797 TGTCTTCTATCGGTCCCCAATC 59.301 50.000 0.00 0.00 0.00 2.67
147 148 1.961394 TCTTCTATCGGTCCCCAATCG 59.039 52.381 0.00 0.00 0.00 3.34
148 149 0.391597 TTCTATCGGTCCCCAATCGC 59.608 55.000 0.00 0.00 0.00 4.58
149 150 1.004918 CTATCGGTCCCCAATCGCC 60.005 63.158 0.00 0.00 0.00 5.54
150 151 2.450479 CTATCGGTCCCCAATCGCCC 62.450 65.000 0.00 0.00 0.00 6.13
151 152 2.957902 TATCGGTCCCCAATCGCCCT 62.958 60.000 0.00 0.00 0.00 5.19
152 153 4.547367 CGGTCCCCAATCGCCCTC 62.547 72.222 0.00 0.00 0.00 4.30
153 154 3.090532 GGTCCCCAATCGCCCTCT 61.091 66.667 0.00 0.00 0.00 3.69
154 155 2.680370 GGTCCCCAATCGCCCTCTT 61.680 63.158 0.00 0.00 0.00 2.85
155 156 1.153147 GTCCCCAATCGCCCTCTTC 60.153 63.158 0.00 0.00 0.00 2.87
156 157 2.203070 CCCCAATCGCCCTCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
157 158 2.584608 CCCAATCGCCCTCTTCGT 59.415 61.111 0.00 0.00 0.00 3.85
158 159 1.815421 CCCAATCGCCCTCTTCGTG 60.815 63.158 0.00 0.00 0.00 4.35
159 160 2.464459 CCAATCGCCCTCTTCGTGC 61.464 63.158 0.00 0.00 0.00 5.34
160 161 1.448540 CAATCGCCCTCTTCGTGCT 60.449 57.895 0.00 0.00 0.00 4.40
161 162 1.021390 CAATCGCCCTCTTCGTGCTT 61.021 55.000 0.00 0.00 0.00 3.91
162 163 0.741221 AATCGCCCTCTTCGTGCTTC 60.741 55.000 0.00 0.00 0.00 3.86
163 164 2.890847 ATCGCCCTCTTCGTGCTTCG 62.891 60.000 0.00 0.00 41.41 3.79
164 165 3.491652 GCCCTCTTCGTGCTTCGC 61.492 66.667 0.00 0.00 39.67 4.70
165 166 2.815647 CCCTCTTCGTGCTTCGCC 60.816 66.667 0.00 0.00 39.67 5.54
166 167 3.181967 CCTCTTCGTGCTTCGCCG 61.182 66.667 0.00 0.00 39.67 6.46
167 168 3.843240 CTCTTCGTGCTTCGCCGC 61.843 66.667 0.00 0.00 39.67 6.53
168 169 4.656117 TCTTCGTGCTTCGCCGCA 62.656 61.111 0.00 0.00 39.67 5.69
181 182 2.344500 CCGCACGTGGGGTTAAGA 59.656 61.111 36.27 0.00 42.54 2.10
182 183 2.030958 CCGCACGTGGGGTTAAGAC 61.031 63.158 36.27 8.57 42.54 3.01
183 184 1.005394 CGCACGTGGGGTTAAGACT 60.005 57.895 23.81 0.00 0.00 3.24
184 185 1.289109 CGCACGTGGGGTTAAGACTG 61.289 60.000 23.81 0.00 0.00 3.51
185 186 1.574702 GCACGTGGGGTTAAGACTGC 61.575 60.000 18.88 0.00 0.00 4.40
186 187 0.034896 CACGTGGGGTTAAGACTGCT 59.965 55.000 7.95 0.00 0.00 4.24
187 188 0.320697 ACGTGGGGTTAAGACTGCTC 59.679 55.000 0.00 0.00 0.00 4.26
188 189 0.736325 CGTGGGGTTAAGACTGCTCG 60.736 60.000 0.00 0.00 0.00 5.03
189 190 0.320697 GTGGGGTTAAGACTGCTCGT 59.679 55.000 0.00 0.00 0.00 4.18
190 191 0.320374 TGGGGTTAAGACTGCTCGTG 59.680 55.000 0.00 0.00 0.00 4.35
191 192 1.019805 GGGGTTAAGACTGCTCGTGC 61.020 60.000 1.71 1.71 40.20 5.34
193 194 0.790814 GGTTAAGACTGCTCGTGCAC 59.209 55.000 8.30 6.82 45.31 4.57
194 195 1.497991 GTTAAGACTGCTCGTGCACA 58.502 50.000 18.64 3.15 45.31 4.57
195 196 1.864711 GTTAAGACTGCTCGTGCACAA 59.135 47.619 18.64 0.00 45.31 3.33
196 197 1.783284 TAAGACTGCTCGTGCACAAG 58.217 50.000 18.64 9.47 45.31 3.16
197 198 0.179073 AAGACTGCTCGTGCACAAGT 60.179 50.000 18.64 13.82 45.31 3.16
198 199 0.673985 AGACTGCTCGTGCACAAGTA 59.326 50.000 18.64 6.52 45.31 2.24
199 200 1.273606 AGACTGCTCGTGCACAAGTAT 59.726 47.619 18.64 8.78 45.31 2.12
200 201 1.391485 GACTGCTCGTGCACAAGTATG 59.609 52.381 18.64 5.06 45.31 2.39
201 202 0.723414 CTGCTCGTGCACAAGTATGG 59.277 55.000 18.64 0.00 45.31 2.74
202 203 0.673333 TGCTCGTGCACAAGTATGGG 60.673 55.000 18.64 0.00 45.31 4.00
203 204 1.369091 GCTCGTGCACAAGTATGGGG 61.369 60.000 18.64 0.00 39.41 4.96
204 205 0.036388 CTCGTGCACAAGTATGGGGT 60.036 55.000 18.64 0.00 0.00 4.95
205 206 0.321210 TCGTGCACAAGTATGGGGTG 60.321 55.000 18.64 0.00 35.68 4.61
212 213 3.016736 CACAAGTATGGGGTGCTAAAGG 58.983 50.000 0.00 0.00 0.00 3.11
213 214 2.024414 CAAGTATGGGGTGCTAAAGGC 58.976 52.381 0.00 0.00 42.22 4.35
214 215 0.551396 AGTATGGGGTGCTAAAGGCC 59.449 55.000 0.00 0.00 40.92 5.19
215 216 0.467474 GTATGGGGTGCTAAAGGCCC 60.467 60.000 0.00 0.00 40.92 5.80
216 217 0.921749 TATGGGGTGCTAAAGGCCCA 60.922 55.000 0.00 0.00 44.07 5.36
217 218 1.809939 ATGGGGTGCTAAAGGCCCAA 61.810 55.000 0.00 0.00 44.07 4.12
218 219 1.229051 GGGGTGCTAAAGGCCCAAA 60.229 57.895 0.00 0.00 44.07 3.28
219 220 1.541310 GGGGTGCTAAAGGCCCAAAC 61.541 60.000 0.00 0.00 44.07 2.93
220 221 0.541998 GGGTGCTAAAGGCCCAAACT 60.542 55.000 0.00 0.00 41.93 2.66
221 222 1.338107 GGTGCTAAAGGCCCAAACTT 58.662 50.000 0.00 0.00 40.92 2.66
222 223 1.691976 GGTGCTAAAGGCCCAAACTTT 59.308 47.619 0.00 0.00 40.87 2.66
223 224 2.894765 GGTGCTAAAGGCCCAAACTTTA 59.105 45.455 0.00 0.00 38.88 1.85
229 230 6.250344 CTAAAGGCCCAAACTTTAGTACAC 57.750 41.667 13.86 0.00 46.17 2.90
230 231 3.150458 AGGCCCAAACTTTAGTACACC 57.850 47.619 0.00 0.00 0.00 4.16
231 232 1.808343 GGCCCAAACTTTAGTACACCG 59.192 52.381 0.00 0.00 0.00 4.94
232 233 2.550639 GGCCCAAACTTTAGTACACCGA 60.551 50.000 0.00 0.00 0.00 4.69
233 234 2.481568 GCCCAAACTTTAGTACACCGAC 59.518 50.000 0.00 0.00 0.00 4.79
234 235 3.731089 CCCAAACTTTAGTACACCGACA 58.269 45.455 0.00 0.00 0.00 4.35
235 236 3.495753 CCCAAACTTTAGTACACCGACAC 59.504 47.826 0.00 0.00 0.00 3.67
236 237 3.495753 CCAAACTTTAGTACACCGACACC 59.504 47.826 0.00 0.00 0.00 4.16
237 238 2.712057 ACTTTAGTACACCGACACCG 57.288 50.000 0.00 0.00 0.00 4.94
238 239 1.956477 ACTTTAGTACACCGACACCGT 59.044 47.619 0.00 0.00 0.00 4.83
239 240 2.287788 ACTTTAGTACACCGACACCGTG 60.288 50.000 0.00 0.00 0.00 4.94
240 241 1.317613 TTAGTACACCGACACCGTGT 58.682 50.000 3.13 3.13 35.44 4.49
241 242 0.874390 TAGTACACCGACACCGTGTC 59.126 55.000 19.93 19.93 43.65 3.67
253 254 4.043168 CGTGTCAAGGCGGAAGTT 57.957 55.556 0.00 0.00 0.00 2.66
254 255 1.569493 CGTGTCAAGGCGGAAGTTG 59.431 57.895 0.00 0.00 0.00 3.16
255 256 1.282875 GTGTCAAGGCGGAAGTTGC 59.717 57.895 0.00 0.00 0.00 4.17
256 257 2.250939 TGTCAAGGCGGAAGTTGCG 61.251 57.895 12.93 12.93 0.00 4.85
257 258 2.668212 TCAAGGCGGAAGTTGCGG 60.668 61.111 18.75 1.66 0.00 5.69
258 259 3.737172 CAAGGCGGAAGTTGCGGG 61.737 66.667 18.75 0.00 0.00 6.13
259 260 4.265056 AAGGCGGAAGTTGCGGGT 62.265 61.111 18.75 0.00 0.00 5.28
260 261 2.886134 AAGGCGGAAGTTGCGGGTA 61.886 57.895 18.75 0.00 0.00 3.69
261 262 3.122971 GGCGGAAGTTGCGGGTAC 61.123 66.667 18.75 1.24 0.00 3.34
262 263 2.357760 GCGGAAGTTGCGGGTACA 60.358 61.111 18.75 0.00 0.00 2.90
263 264 2.674084 GCGGAAGTTGCGGGTACAC 61.674 63.158 18.75 0.00 0.00 2.90
264 265 2.030958 CGGAAGTTGCGGGTACACC 61.031 63.158 9.15 0.00 0.00 4.16
290 291 4.033358 CACCGTGCATCTCTCATTAAAGAC 59.967 45.833 0.00 0.00 0.00 3.01
310 311 1.891450 CGGAGGGAAGGCGTATAGGAT 60.891 57.143 0.00 0.00 0.00 3.24
343 346 9.706691 TCACTAATCCCAATCGATAAAGATAAC 57.293 33.333 0.00 0.00 0.00 1.89
359 362 7.956420 AAAGATAACGAAAGACACACATACA 57.044 32.000 0.00 0.00 0.00 2.29
513 517 8.792830 ATCCATACATAAATCGTATTCCCTTG 57.207 34.615 0.00 0.00 0.00 3.61
553 557 2.158986 CCCCATCTCACTTCTACTGCTG 60.159 54.545 0.00 0.00 0.00 4.41
557 561 5.069648 CCCATCTCACTTCTACTGCTGATTA 59.930 44.000 0.00 0.00 0.00 1.75
558 562 6.239543 CCCATCTCACTTCTACTGCTGATTAT 60.240 42.308 0.00 0.00 0.00 1.28
559 563 6.867816 CCATCTCACTTCTACTGCTGATTATC 59.132 42.308 0.00 0.00 0.00 1.75
697 701 7.701809 AGTATAAGATTAAGAAAGCTCGTGC 57.298 36.000 0.07 0.07 40.05 5.34
715 719 6.129404 GCTCGTGCGTTAGAGATATAGAAAAC 60.129 42.308 7.22 0.00 36.65 2.43
831 836 9.862371 GTTATACTATGTAACTCTCATCCATGG 57.138 37.037 4.97 4.97 0.00 3.66
939 944 6.482308 CCTACCCTTGAATTTACAAGATACCG 59.518 42.308 8.15 0.00 46.85 4.02
1485 1500 1.860676 TATGCCGTGAATAGTTCCGC 58.139 50.000 0.00 0.00 0.00 5.54
1575 1592 7.345691 TCTGAATTGGTATAATGGCTCTTTCA 58.654 34.615 0.00 0.00 0.00 2.69
1738 1761 7.166851 TCAATTAGTAGTATCCCTAGAGTCCG 58.833 42.308 0.00 0.00 0.00 4.79
1767 1790 5.455872 TCCCCATACTACTAGTGAAAGAGG 58.544 45.833 5.39 0.00 0.00 3.69
1894 1927 6.770286 ATCATAGTGGAATCAAGGGTACAT 57.230 37.500 0.00 0.00 0.00 2.29
1898 1931 8.008332 TCATAGTGGAATCAAGGGTACATAGTA 58.992 37.037 0.00 0.00 0.00 1.82
2080 2115 6.043243 TGAATAGAAGAAGCGGGAATAGGAAT 59.957 38.462 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.396435 TACAGAGCACCACCCTTGTG 59.604 55.000 0.00 0.00 42.39 3.33
2 3 1.072331 CTTACAGAGCACCACCCTTGT 59.928 52.381 0.00 0.00 0.00 3.16
3 4 1.072331 ACTTACAGAGCACCACCCTTG 59.928 52.381 0.00 0.00 0.00 3.61
4 5 1.348036 GACTTACAGAGCACCACCCTT 59.652 52.381 0.00 0.00 0.00 3.95
5 6 0.977395 GACTTACAGAGCACCACCCT 59.023 55.000 0.00 0.00 0.00 4.34
6 7 0.389948 CGACTTACAGAGCACCACCC 60.390 60.000 0.00 0.00 0.00 4.61
7 8 0.317479 ACGACTTACAGAGCACCACC 59.683 55.000 0.00 0.00 0.00 4.61
8 9 1.669211 GGACGACTTACAGAGCACCAC 60.669 57.143 0.00 0.00 0.00 4.16
9 10 0.601558 GGACGACTTACAGAGCACCA 59.398 55.000 0.00 0.00 0.00 4.17
10 11 0.108756 GGGACGACTTACAGAGCACC 60.109 60.000 0.00 0.00 0.00 5.01
11 12 3.420397 GGGACGACTTACAGAGCAC 57.580 57.895 0.00 0.00 0.00 4.40
25 26 2.115291 GCAAGATCCTTGCCGGGAC 61.115 63.158 18.04 0.00 39.38 4.46
26 27 2.272146 GCAAGATCCTTGCCGGGA 59.728 61.111 18.04 0.00 39.38 5.14
27 28 2.045045 TGCAAGATCCTTGCCGGG 60.045 61.111 23.68 0.00 44.32 5.73
28 29 2.117156 CCTGCAAGATCCTTGCCGG 61.117 63.158 23.68 22.58 44.32 6.13
29 30 2.117156 CCCTGCAAGATCCTTGCCG 61.117 63.158 23.68 18.64 44.32 5.69
30 31 1.755783 CCCCTGCAAGATCCTTGCC 60.756 63.158 23.68 10.39 44.32 4.52
31 32 1.000396 ACCCCTGCAAGATCCTTGC 60.000 57.895 20.97 20.97 45.11 4.01
32 33 0.622665 AGACCCCTGCAAGATCCTTG 59.377 55.000 2.54 2.54 34.07 3.61
33 34 2.122768 CTAGACCCCTGCAAGATCCTT 58.877 52.381 0.00 0.00 34.07 3.36
34 35 1.799933 CTAGACCCCTGCAAGATCCT 58.200 55.000 0.00 0.00 34.07 3.24
35 36 0.107643 GCTAGACCCCTGCAAGATCC 59.892 60.000 0.00 0.00 34.07 3.36
36 37 0.833287 TGCTAGACCCCTGCAAGATC 59.167 55.000 0.00 0.00 34.07 2.75
37 38 1.289160 TTGCTAGACCCCTGCAAGAT 58.711 50.000 0.00 0.00 41.06 2.40
38 39 2.772102 TTGCTAGACCCCTGCAAGA 58.228 52.632 0.00 0.00 41.06 3.02
40 41 1.002134 GCTTGCTAGACCCCTGCAA 60.002 57.895 0.00 0.00 43.25 4.08
41 42 2.671070 GCTTGCTAGACCCCTGCA 59.329 61.111 0.00 0.00 34.69 4.41
42 43 2.124529 GGCTTGCTAGACCCCTGC 60.125 66.667 0.00 0.00 0.00 4.85
43 44 2.187946 CGGCTTGCTAGACCCCTG 59.812 66.667 0.00 0.00 0.00 4.45
44 45 3.787001 GCGGCTTGCTAGACCCCT 61.787 66.667 0.00 0.00 41.73 4.79
45 46 4.858680 GGCGGCTTGCTAGACCCC 62.859 72.222 0.00 0.00 45.43 4.95
46 47 4.858680 GGGCGGCTTGCTAGACCC 62.859 72.222 9.56 2.50 45.43 4.46
47 48 4.858680 GGGGCGGCTTGCTAGACC 62.859 72.222 9.56 5.27 45.43 3.85
80 81 2.125766 AAAGGACAAGCTCGGACCCC 62.126 60.000 0.00 0.00 0.00 4.95
81 82 0.955919 CAAAGGACAAGCTCGGACCC 60.956 60.000 0.00 0.00 0.00 4.46
82 83 0.250338 ACAAAGGACAAGCTCGGACC 60.250 55.000 0.00 0.00 0.00 4.46
83 84 1.531578 GAACAAAGGACAAGCTCGGAC 59.468 52.381 0.00 0.00 0.00 4.79
84 85 1.416401 AGAACAAAGGACAAGCTCGGA 59.584 47.619 0.00 0.00 0.00 4.55
85 86 1.801178 GAGAACAAAGGACAAGCTCGG 59.199 52.381 0.00 0.00 0.00 4.63
86 87 2.478134 CAGAGAACAAAGGACAAGCTCG 59.522 50.000 0.00 0.00 0.00 5.03
87 88 3.471680 ACAGAGAACAAAGGACAAGCTC 58.528 45.455 0.00 0.00 0.00 4.09
88 89 3.135530 AGACAGAGAACAAAGGACAAGCT 59.864 43.478 0.00 0.00 0.00 3.74
89 90 3.471680 AGACAGAGAACAAAGGACAAGC 58.528 45.455 0.00 0.00 0.00 4.01
90 91 3.738282 CGAGACAGAGAACAAAGGACAAG 59.262 47.826 0.00 0.00 0.00 3.16
91 92 3.383505 TCGAGACAGAGAACAAAGGACAA 59.616 43.478 0.00 0.00 0.00 3.18
92 93 2.956333 TCGAGACAGAGAACAAAGGACA 59.044 45.455 0.00 0.00 0.00 4.02
93 94 3.004944 AGTCGAGACAGAGAACAAAGGAC 59.995 47.826 5.99 0.00 0.00 3.85
94 95 3.004839 CAGTCGAGACAGAGAACAAAGGA 59.995 47.826 5.99 0.00 0.00 3.36
95 96 3.243569 ACAGTCGAGACAGAGAACAAAGG 60.244 47.826 5.99 0.00 0.00 3.11
96 97 3.971150 ACAGTCGAGACAGAGAACAAAG 58.029 45.455 5.99 0.00 0.00 2.77
97 98 4.098044 AGAACAGTCGAGACAGAGAACAAA 59.902 41.667 5.99 0.00 0.00 2.83
98 99 3.632604 AGAACAGTCGAGACAGAGAACAA 59.367 43.478 5.99 0.00 0.00 2.83
99 100 3.215151 AGAACAGTCGAGACAGAGAACA 58.785 45.455 5.99 0.00 0.00 3.18
100 101 3.907894 AGAACAGTCGAGACAGAGAAC 57.092 47.619 5.99 0.00 0.00 3.01
101 102 4.920640 AAAGAACAGTCGAGACAGAGAA 57.079 40.909 5.99 0.00 0.00 2.87
102 103 4.920640 AAAAGAACAGTCGAGACAGAGA 57.079 40.909 5.99 0.00 0.00 3.10
121 122 3.946606 GGGGACCGATAGAAGACAAAAA 58.053 45.455 0.00 0.00 40.86 1.94
122 123 3.622166 GGGGACCGATAGAAGACAAAA 57.378 47.619 0.00 0.00 40.86 2.44
137 138 1.153147 GAAGAGGGCGATTGGGGAC 60.153 63.158 0.00 0.00 0.00 4.46
138 139 2.731571 CGAAGAGGGCGATTGGGGA 61.732 63.158 0.00 0.00 0.00 4.81
139 140 2.203070 CGAAGAGGGCGATTGGGG 60.203 66.667 0.00 0.00 0.00 4.96
140 141 1.815421 CACGAAGAGGGCGATTGGG 60.815 63.158 0.00 0.00 0.00 4.12
141 142 2.464459 GCACGAAGAGGGCGATTGG 61.464 63.158 0.00 0.00 40.75 3.16
142 143 3.093278 GCACGAAGAGGGCGATTG 58.907 61.111 0.00 0.00 40.75 2.67
163 164 3.428282 CTTAACCCCACGTGCGGC 61.428 66.667 19.16 0.00 0.00 6.53
164 165 2.030958 GTCTTAACCCCACGTGCGG 61.031 63.158 17.71 17.71 0.00 5.69
165 166 1.005394 AGTCTTAACCCCACGTGCG 60.005 57.895 10.91 0.32 0.00 5.34
166 167 1.574702 GCAGTCTTAACCCCACGTGC 61.575 60.000 10.91 0.00 0.00 5.34
167 168 0.034896 AGCAGTCTTAACCCCACGTG 59.965 55.000 9.08 9.08 0.00 4.49
168 169 0.320697 GAGCAGTCTTAACCCCACGT 59.679 55.000 0.00 0.00 0.00 4.49
169 170 0.736325 CGAGCAGTCTTAACCCCACG 60.736 60.000 0.00 0.00 0.00 4.94
170 171 0.320697 ACGAGCAGTCTTAACCCCAC 59.679 55.000 0.00 0.00 0.00 4.61
171 172 0.320374 CACGAGCAGTCTTAACCCCA 59.680 55.000 0.00 0.00 0.00 4.96
172 173 1.019805 GCACGAGCAGTCTTAACCCC 61.020 60.000 0.00 0.00 41.58 4.95
173 174 2.457080 GCACGAGCAGTCTTAACCC 58.543 57.895 0.00 0.00 41.58 4.11
184 185 1.369091 CCCCATACTTGTGCACGAGC 61.369 60.000 30.31 0.00 42.57 5.03
185 186 0.036388 ACCCCATACTTGTGCACGAG 60.036 55.000 29.07 29.07 0.00 4.18
186 187 0.321210 CACCCCATACTTGTGCACGA 60.321 55.000 13.13 9.87 0.00 4.35
187 188 2.170738 CACCCCATACTTGTGCACG 58.829 57.895 13.13 0.65 0.00 5.34
191 192 3.016736 CCTTTAGCACCCCATACTTGTG 58.983 50.000 0.00 0.00 0.00 3.33
192 193 2.620627 GCCTTTAGCACCCCATACTTGT 60.621 50.000 0.00 0.00 42.97 3.16
193 194 2.024414 GCCTTTAGCACCCCATACTTG 58.976 52.381 0.00 0.00 42.97 3.16
194 195 1.063942 GGCCTTTAGCACCCCATACTT 60.064 52.381 0.00 0.00 46.50 2.24
195 196 0.551396 GGCCTTTAGCACCCCATACT 59.449 55.000 0.00 0.00 46.50 2.12
196 197 0.467474 GGGCCTTTAGCACCCCATAC 60.467 60.000 0.84 0.00 46.50 2.39
197 198 1.927428 GGGCCTTTAGCACCCCATA 59.073 57.895 0.84 0.00 46.50 2.74
198 199 2.689813 GGGCCTTTAGCACCCCAT 59.310 61.111 0.84 0.00 46.50 4.00
207 208 5.072055 GGTGTACTAAAGTTTGGGCCTTTA 58.928 41.667 4.53 0.00 34.20 1.85
208 209 3.893200 GGTGTACTAAAGTTTGGGCCTTT 59.107 43.478 4.53 0.00 36.23 3.11
209 210 3.493334 GGTGTACTAAAGTTTGGGCCTT 58.507 45.455 4.53 0.00 0.00 4.35
210 211 2.551504 CGGTGTACTAAAGTTTGGGCCT 60.552 50.000 4.53 0.00 0.00 5.19
211 212 1.808343 CGGTGTACTAAAGTTTGGGCC 59.192 52.381 0.00 0.00 0.00 5.80
212 213 2.481568 GTCGGTGTACTAAAGTTTGGGC 59.518 50.000 3.85 0.00 0.00 5.36
213 214 3.495753 GTGTCGGTGTACTAAAGTTTGGG 59.504 47.826 3.85 0.00 0.00 4.12
214 215 3.495753 GGTGTCGGTGTACTAAAGTTTGG 59.504 47.826 0.00 0.00 0.00 3.28
215 216 3.182972 CGGTGTCGGTGTACTAAAGTTTG 59.817 47.826 0.00 0.00 0.00 2.93
216 217 3.181476 ACGGTGTCGGTGTACTAAAGTTT 60.181 43.478 0.00 0.00 41.39 2.66
217 218 2.362077 ACGGTGTCGGTGTACTAAAGTT 59.638 45.455 0.00 0.00 41.39 2.66
218 219 1.956477 ACGGTGTCGGTGTACTAAAGT 59.044 47.619 0.00 0.00 41.39 2.66
219 220 2.287788 ACACGGTGTCGGTGTACTAAAG 60.288 50.000 8.21 0.00 41.39 1.85
220 221 1.680735 ACACGGTGTCGGTGTACTAAA 59.319 47.619 8.21 0.00 41.39 1.85
221 222 1.266718 GACACGGTGTCGGTGTACTAA 59.733 52.381 23.92 0.00 37.67 2.24
222 223 0.874390 GACACGGTGTCGGTGTACTA 59.126 55.000 23.92 0.00 37.67 1.82
223 224 1.656441 GACACGGTGTCGGTGTACT 59.344 57.895 23.92 0.00 37.67 2.73
224 225 4.233408 GACACGGTGTCGGTGTAC 57.767 61.111 23.92 1.91 37.67 2.90
236 237 1.569493 CAACTTCCGCCTTGACACG 59.431 57.895 0.00 0.00 0.00 4.49
237 238 1.282875 GCAACTTCCGCCTTGACAC 59.717 57.895 0.00 0.00 0.00 3.67
238 239 2.250939 CGCAACTTCCGCCTTGACA 61.251 57.895 0.00 0.00 0.00 3.58
239 240 2.556287 CGCAACTTCCGCCTTGAC 59.444 61.111 0.00 0.00 0.00 3.18
240 241 2.668212 CCGCAACTTCCGCCTTGA 60.668 61.111 0.00 0.00 0.00 3.02
241 242 3.737172 CCCGCAACTTCCGCCTTG 61.737 66.667 0.00 0.00 0.00 3.61
242 243 2.886134 TACCCGCAACTTCCGCCTT 61.886 57.895 0.00 0.00 0.00 4.35
243 244 3.315949 TACCCGCAACTTCCGCCT 61.316 61.111 0.00 0.00 0.00 5.52
244 245 3.122971 GTACCCGCAACTTCCGCC 61.123 66.667 0.00 0.00 0.00 6.13
245 246 2.357760 TGTACCCGCAACTTCCGC 60.358 61.111 0.00 0.00 0.00 5.54
246 247 2.030958 GGTGTACCCGCAACTTCCG 61.031 63.158 0.00 0.00 0.00 4.30
247 248 3.976758 GGTGTACCCGCAACTTCC 58.023 61.111 0.00 0.00 0.00 3.46
256 257 2.048877 CACGGTGTCGGTGTACCC 60.049 66.667 0.00 0.00 41.39 3.69
257 258 2.735857 GCACGGTGTCGGTGTACC 60.736 66.667 10.24 0.00 41.39 3.34
258 259 1.349259 GATGCACGGTGTCGGTGTAC 61.349 60.000 10.24 0.00 41.39 2.90
259 260 1.080366 GATGCACGGTGTCGGTGTA 60.080 57.895 10.24 5.33 41.39 2.90
260 261 2.357034 GATGCACGGTGTCGGTGT 60.357 61.111 10.24 0.00 41.39 4.16
261 262 2.048222 AGATGCACGGTGTCGGTG 60.048 61.111 10.24 3.66 41.39 4.94
262 263 2.214181 GAGAGATGCACGGTGTCGGT 62.214 60.000 10.24 0.00 41.39 4.69
263 264 1.517257 GAGAGATGCACGGTGTCGG 60.517 63.158 10.24 0.00 41.39 4.79
264 265 0.179127 ATGAGAGATGCACGGTGTCG 60.179 55.000 10.24 0.00 43.02 4.35
265 266 2.015736 AATGAGAGATGCACGGTGTC 57.984 50.000 10.24 0.13 0.00 3.67
266 267 3.610040 TTAATGAGAGATGCACGGTGT 57.390 42.857 10.24 0.00 0.00 4.16
267 268 4.033358 GTCTTTAATGAGAGATGCACGGTG 59.967 45.833 3.15 3.15 0.00 4.94
268 269 4.184629 GTCTTTAATGAGAGATGCACGGT 58.815 43.478 0.00 0.00 0.00 4.83
269 270 3.243877 CGTCTTTAATGAGAGATGCACGG 59.756 47.826 0.00 0.00 0.00 4.94
270 271 3.243877 CCGTCTTTAATGAGAGATGCACG 59.756 47.826 0.00 0.00 0.00 5.34
271 272 4.433615 TCCGTCTTTAATGAGAGATGCAC 58.566 43.478 0.00 0.00 0.00 4.57
290 291 0.538977 TCCTATACGCCTTCCCTCCG 60.539 60.000 0.00 0.00 0.00 4.63
323 326 8.148351 TCTTTCGTTATCTTTATCGATTGGGAT 58.852 33.333 1.71 7.49 31.55 3.85
328 331 8.592998 GTGTGTCTTTCGTTATCTTTATCGATT 58.407 33.333 1.71 0.00 31.55 3.34
343 346 6.312672 TCCACATATTGTATGTGTGTCTTTCG 59.687 38.462 21.83 9.47 46.84 3.46
513 517 5.321927 TGGGGAAAAGAGGTCTGAAATAAC 58.678 41.667 0.00 0.00 0.00 1.89
781 786 3.226777 AGGAAGATCCTCTATCCACACG 58.773 50.000 0.00 0.00 45.66 4.49
815 820 9.646427 GAGTTATATTCCATGGATGAGAGTTAC 57.354 37.037 17.06 6.91 0.00 2.50
905 910 0.255890 TCAAGGGTAGGGCTTGCATC 59.744 55.000 0.00 0.00 0.00 3.91
939 944 2.514458 TCCCATGGAGAGGAAAAAGC 57.486 50.000 15.22 0.00 0.00 3.51
1378 1393 4.335416 TCCATGGATTCTTTGGTCAAGAC 58.665 43.478 11.44 0.00 41.56 3.01
1605 1627 8.889849 TCTTTTCTTTAGTTTTGTTTCACTCG 57.110 30.769 0.00 0.00 0.00 4.18
1738 1761 3.574826 CACTAGTAGTATGGGGAAGGAGC 59.425 52.174 1.57 0.00 0.00 4.70
1791 1814 6.042208 GGATATAGTAAGTCTCACTTGGGCTT 59.958 42.308 0.00 0.00 39.11 4.35
1915 1950 4.524802 ACTGATTGATCCATGGCCTTAA 57.475 40.909 6.96 0.10 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.