>input_sequence_87629
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--------------------------------------------ATGGAAGTCAATATTCTCGCATTTATTGCTACTGCA
CTGTTTATTCTAGTTCCTACTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAGAAAAAATAATTAA-----------
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>chr3D_1_TraesCS3D01G200900
CCACAAGGGTGGTGCTCTGTAAGTCGTCCCGGCAAGGATCTTGCAGGGGTCTAGCAAGCCGCCCCGGCAAGGGCCTTGCC
GGGGTCCGAGCTTGTCCTTTGTTCTCTGTCTCGACTGTTCTTTTTTGTCTTCTATCGGTCCCCAATCGCCCTCTTCGTGC
TTCGCCGCACGTGGGGTTAAGACTGCTCGTGCACAAGTATGGGGTGCTAAAGGCCCAAACTTTAGTACACCGACACCGTG
TCAAGGCGGAAGTTGCGGGTACACCGACACCGTGCATCTCTCATTAAAGACGGAGGGAAGGCGTATAGGATT-TTTT-TT
CACTAATCCCAATCGATAAAGATAACGAAAGACACACATACAATATGTGGATTAGTAGAATTTAGGATATTATATTGTAT
TATATTACCCTATCTTTCTTTATGATGATACCATCCTCATCTTAATTTCCTATTCCACTCTTATGAAAT-GAGTACCGGT
ATTTTACCGGAATCCATACATAAATCGTATTCCCTTGTTATTTCAGACCTCTTTTCCCCATCTCACTTCTACTGCTGATT
ATCATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATAATTGTATCTATAACTATAAGAAAAAGGAAGGG
TAATTGTATAAGATTAAGAAAGTATAAGATTAAGAAAGTATAAGATTAAGAAAGCTCGTGCGTTAGAGATATAGAAAACA
AAAAGTAGAAAA-GGATTAAAAAAGAGGGAATTCCTAATCCAATCAAAAAACCCATTTTGGTCTTCGTGTGGATAGAGGA
TCTTCCTATGTTATACTATGTAACTCTCATCCATGGAATATAACTCTCATCCATGAATTGATTTGATAGATCCGATATTC
ATAATATTGAATTGATTCGGTATTATCAGGATGCAAGCCCTACCCTTGAATTTACAAGATACCGCTTTTTCCTCTCCATG
GGATTACATCCCGAGTTATAGTAAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCA
CTGTTTATTCTAGTTCCTACTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAGAAAAAATAATTAATTGGAATTCCA
ATTAATCATTGAAGAAATTAAAAAGGTATTAAATAAAA-AATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAA
GTGTGGTAGAAAGAACTACATATAGTTTTTTCTACGACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTAC----
-ATAGAATAGATTAGTAGATTGAAATAGTTAATTAGTCTAATTCAATTTCTTTTTTCATTGCATCCACTTAATTTCAATC
AGGTCAAAATAAAA--AAA--ATCTAAGACAAGTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATATTAAGAAT
AGACTATAGTAAAAAGTAAAAGGAAATGGAAAATGTGTGATATGCCGTGAATAGTTCCGCGGAAGAAAGTCTAATTTTCT
TATGTATAT-AC-TTTTTTTAACCATTCGTCATTTCTACTAGAAATTCTGAATTGGTATAATGGCTCTTTCATAC-----
AACTTACAATACAAGAGTTTCTTACACGAGTGAAACAAAACTAAAG-AAAAGATTAAAGAATAACGTTTAACAAAATGAT
TAATGCAAAATGATCCATTAAAGAAAAGAATTGATACGAAAATTTTATTACTTAATCAATTAGTAGTATCCCTAGAGTCC
GCTCCTTCCCCATACTACTAGTGAAAGAGGAAATGTAAAGACTACCATTAAAGAAGCCCAAGTGAGACTTACTATATCCA
TCTAAATTATGTCTCCTATTTCTATGAAGGGATT-----ATTCTA-----CTATTGATCAATAATCATAGTGGAATCAAG
GGTACATAGTAAAAA-A-GGGATTCCGCCTTAAGGCCATGGATCAATCAGTTCAAGGAATTTACTCCTAACAAATTCTTA
TAGGAATTCTGGTAGAATTAGAGAGCATTAAAAATACGATACTATAGCCCTTTTTTCCCTAAAAAAGAAAGAGTACGGGA
ATGATGTCCTGAATAGAAGAAGCGGGAATAGGAATATTTTTTATTCCTTTTGTTACTCT
>chr5D_273
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--------------------------------------------------------------------------------
--------------------------------TGCGTCCCTCATTAAAGAGGAAGGGAAGGCATATAGGAAT-TTTT-TT
CACTACTCCCGATCGATAAAGATAAAGAAAGACACACATACGATATGTGGATTAGTAGAATTTAGGA----------TAT
TATATTACTCTATCTTTCTTTATGATGATACCATCCTCATCTTAATTTCCTATTCCACTCTTATGGAATAGAGTACCGGT
ATTTTACCGGAATCCATACATAAATCGTATTCCCTTTTTATTTCAGACCTCTTTTCCCCATCTCACTTCTACTGCTTATT
TGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATAATTGTATGTATAACTATAAGAAAAAGGAAGGG
AAATT----------------GTATACGATTAAGAAAGTATAAGATTAAGAAAGCTCGTGGGTTAGAGATATAGAAAAGA
AAAAGTAGAAAA-GAATTAAAAAAGAGGGAATTCCTAATCCAATCAAAAAACCCATTTTGGTCTTAGTGTGGATAGAGGA
TCTTCCTATGTTATACTATATAACTCTCATCCGTGAAATGTAACTCTCATCCATGAATTGATTTGATAGATCCGATATTC
ATAATATTGAATTGATTCGGTATTATCAGAATGCAAGCCCTACCCTTGAATTTACAAGATACCCCTTTTTCCTCTCCATG
GGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCA
CTATTCATTCTAGTTCCTACTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAATAATTAATTGGAATTCCA
ATTAATCATTGAAGAAATTAAAAAGGGATTAAATAAAAAAATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAA
GTGTGGTAGAAAGAACTACATATAGTTTTTTCTACGACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTAC----
-ATAGAATAGATTAGTAGATTGAAATAGTTAACTAGTCTAATTCAATTTCTTTTTTCATTGCATCCACTTAATTTCAATC
AGGTCAAAAT--AA--AAAAAATCTAAGACAATTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATATTAAGAAT
AGACTATAGTAAAAAGTAAAAGGAAATGGAAAATGTGTGATATGCCGTGAATAGTTCCGTGGAAGAAAGTCTAATTTTCT
TATGTATAGAAC-TTTTTTTAACCATTCGTCATTTCTAGTAGAAATTATGAATTGGTATAATGGCTCTTTCTTACATTAC
AACTTACAATACAAGAGTTTCTTACAGGAGTGAAACAAAACTTAAGAAAAAGATTAAAGAATAACGTTTGACAAAATGAT
TAATGCAAAATGATCCATTAATGAAAAGAATTGATACAACAATTTGATTACTTAATCAATTAGTAGTATCCCTAGAGTCC
ACTCCTTCCCCATACTACTAGTGAAAGAGAAAATGTAAAGACTACCATTAAAGCAGCCCAAGCGAGACTTACTATATCCA
TCTAAATTATGTCTCCTATTTCTATGAAGGGATTATTCTATTCTA-----CTATTGATCAATAATCATAGTGGAATCAAG
GGTATAGAGTCAAAA-A-GGGATTCCGCCCTAAGGCCATGGATCAATCAGTTCAAGGAATTTACTCCTAACAAATTCTTA
TAGGAATTCTGGTAGAATTAGAGAGCATTAAAAATACGATACTATAGCCCTTTTTTCCTTAAAAAAGAAAGAGTATGGGA
ATGATGTCCTGAATAGAAGAAGCGGGAATAGGAAGATTTTTTATTCCTTTTGTTACTCT
>chr5D_273
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------TGCATCCCTCATTAAAGAGGGAGGGAAGGCATATAGGAAT-TTTTTTT
CACTACTCCCGATCGATAAAGATAAAGAAAGACACACATACGATATGTGGATTAGTAGAATTTAGGA----------TAT
TATATTACTCTATGTTTCTTTATGATGATACCATCCTCATCTTAATTTCCTATTCCACTCTTATGGAATAGAGTACCGGT
ATTTTACCGGAATCCATACATAAATCGTATTCCCTTTTTATTTCAGACCTCTTTTCCCCATCTCACTTCTACTGCTTATT
TGGATGTCAATGTGACCCATAGAAAGTTGGTCATATAATACATACATAATTGTATGTATAACTATAAGAAAAAGGAAGGG
AAATT----------------GTATAATATTAAGAAAGTAGAAGATTAAAAAAGCTCGTGGGTTAGAGATATAGAAAAGA
AAAAGTAGAAAA-GGATTAAAAAAGAGGGAATTCCTAATCCAATCAAAAAACCCATTTTGGTCTTAGTGTGGATAGAGGA
TCTTCCTATGTTATACTATATAACTCTCATCCGTGAAATATAACTCTCATCCATGAATTGATTTGATAGATCCGATATTC
ATAATATTGAATTGATTTAGTATTATCAGAATGCAAGCCCTACCCTTGAATTTACAACATACCCCTTTTCCCTCTCCATG
GGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCA
CTGTTCATTGTAGTTCCTACTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAATAATTAATTGGAATTCCA
ATTAATCATTGAAGAAATTAAAAAGGGATTAAATAAAAAAATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAA
CTGTGGTAGAAAGAACTACATATAGTTTTTTCTACGACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTAC----
-ATAGAATAGATTAGTAGATTGAAATAGTTAAGTAGTCTAATTCAATTTCTTTTTTCATTGCATCCACTTAATTTCAATC
AGGTCAAAAT--AA--AAA--ATCTAAGACAATTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATATTAAGAAT
AGACTATAGTAAAAAGTAAAAGGAAATGGAAAATGTGTGATATGCCGTGAATAGTTCCGTGGAAGAAAGTCTAATTTTCT
TATGTATAGAAC-TTTTTTTAACCATTCGTCATTTCTAGTAGAAATTATGAATTGGTATAATGGCTCTTTCTTACATTAC
AACTTACAATACAAGAGTTTCTTACAGGAGTGAAACAAAACTAAAGAAAAAGATTAAAGAATAACGTTTGACAAAATGAT
TAATGCAAAATGATCCATTAATGAAAAGAATTGATACAACAATTTGATCACTTAATCAATTAGTAGGATCCCTAGAGTCC
ACTCCTTCCCCATACTACTAGTGAAAGAGAAAATGTAAAGACTACCATTAAAGCAGCCCAAGTGAGACTTACTATATCCA
TCTAAATTATGTCTCCTATTTCTATGAAGGGATT-----ATTCTATTCTACTATTGATCAATAATCATAGTGGAATCAAG
GGTACAGAGTTAAAA-A-GGGATTCCACCCTAAGGCCATGGATCAATCAGTTCAAGGAATTTACTCCTAACAAATTCTTA
TAGGAATTCTGGTAGAATTAGAGAGCATTAAAAATACGATACTATAGCCCTTTTTTCCGTAAAAAAGAAAGAGTACGGGA
ATGATGTCCTAAATAGAAGAAGCGGGAATAGGAAGATTTTTTATTCCTTTTGTTACTCT
>chr5D_273
--------------------------------------------------------------------------------
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--------------------------------TGCATCCCTCATTAAAGAGGGAGGGAAGGCATATAGGAAT-TTTTTTT
CACTACTCCCGATCGATAAAGATAAAGAAAGACACACATACGATATGTGGATTAGTAGAATTTAGGA----------TAT
TATATTACTCTATCTTTCTTTATGATGATACCATCCTCATCTTAATTTCCTATTCCACTCTTATGGAATAGAGTACCGGT
ATTTTACCGGAATCCATACATAAATCGTATTCCCTTTTTATTTCAGACCACTTTTCCCCATCTCACTTCTACTGCTTATT
TGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATAATTGTATGTATAACTATAAGAAAAAGGAAGGG
AAATT----------------GTATAAGATTAAGAAAGTAGAAGATTAAGAAAGCTCGTGGGTTAGAGATATAGAAAAGA
AAAAGTAGAA-A-GGATTAAAAAAGAGGGAATTCCTAATCCAATCAAAAAACCCATTTTGGTCTTAGTGTGGATAGAGGA
TCTTCCTATGTTATACTATATAACTCTCATCCGTGAAATATAACTCTCATCCATGAATTGATTTGATAGATCCGATATTC
ATAATATTGAATTGATTCAGTATTATCAGAAGGCAAGCCCTACCCTTGAATTTACAAGATACCCCTTTTTCCTCTCCATG
GGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCA
CTGTTCATTCTAGTTCCTACTTCTTTTTTACTTATTATTTATGTTAAAACAGTCAGCCAAAATAATTAATTGGAATTCCA
ATTAATCATTGAAGAAATTAAAAAGGGATTAAATAAAAAAATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAA
GTGTGGTAGAAAGAACTACATATAGTTTTTTCTACGACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTAC----
-ATAGAATAGATTAGTAGATTGAAATAGTTAAGTAGTCTAATTCAATTTCTTTTTTCATTGCATCGACTTAATTTCAATC
AGGTCAAAAT-AAA--AAA--ATCTAAGACAATTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATATTAAGAAT
AGACTATAGTAAAAAGTAAAAGGAAATGGAAAATGTGTGATATGCCGTGAATAATTCCGTGGAAGAAAGTCTAATTTTCT
TATGTATAGAAC-TTTTTTTAACCATTCGTCATTTCTAGTAGAAATTATGAATTGGTATAATGGCTCTTTCTTACATTAC
AACTTACAATACAAGAGTTTCTTACAGGAGTGAAACAAAACTAAAGAAAAAGATTAAAGAATAACGTTTGACAAAATGAT
TAATGCAAAATGATCCATTAATGAAAAGAATTGATACAACAATTTGATTACTTAATCAATTAGTAGTATCCCTAGAGTCC
ATTCCTTCCCCATACTACTAGTGAAAGAGAAAATGTAAAGACTACCATTAAAGCAGCCCAAGCGAGAA------------
---------------CTATTTCTATGAAGGGATT-----ATTCTATTCTACTATTGATCAATAATCATAGTGGAATCAAG
GGTACAGAGTCAAAA-A-GGGATTCCGCCCTAAGGCCATGGATCAATCAGTTCAAGGAATTTACTCCTAACAAATTCTTA
TAGGAATTCTGGTAGAATTAGAGAGCATTAAAAATACGATACTATAGCTCTTTTTTCCTTAAAAAAGAAAGAGTACGGGA
ATGATGTCCTGAATAGAAGAAGCGGGAATAGGAAGATTTTTTATTCCTTTTGTTACTCT
>chr1D_273
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------TGCATCCCTCATTAAAGAGGGAGGGAAGGCATATAGGAAT-TTTTTTT
CACTACTCCCGATAGATAAAGATAAAGAAAGACACACATACGATATGTGGATTAGTAGAATTTAGGA----------TAT
TATACTACTCTATCTTTCTTTATGATGATACCATCCTCATCTTAATTTCCTATTCCACTCTTATGGAATAGAGTACCGGT
ATTTTACCGGAATCCATACATAAATCGTATTCCCTTTTTATTTCAGACCTCTTTTCCCCATCTCACTTCTACTGCTTATT
TGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATAATTGTATGTATAACTATAAGAAAAAGGAAGGG
AAATT----------------GTATAAGATTAAGAAAGTATAAGATTAAGAAAGCTCGTGGGTTAGAGATATAGAAAAGA
AAAAGTAGAA-AAGGATTAAAAAAGAGGGAATTCCTAATCCAATCAAAAAACCCATTTTGGTCTTAGTGTGGATAGAGGA
TCTTCCTATGTTATACTATATAACTCTCATCCGTGAAATATAACTCTCATCCATGAATTGATTTGATAGATCCGATATTC
ATAATATTGAATTGATTTAGTATTATCAGAATGCAAGCCCTATCCTTGAATTTACAAGATACCCCTTTTTCCTCTCCATG
GGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCA
CTGTTCATTCTAGTTCCTACTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAATAATTAATTGGAATTCCA
ATTAATCATTGAAGAAATTAAAAAGGGATTAAATAAAA-AATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAA
GTGTGGTAGAAAGAACTACATATAGTTTTTTCTACGACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTAC----
-ATAGAATAGATTAGTAGATTGAAATAGTTAAGTAGTCTAATTCAATTTCTTTTTTCACTGCATCCACTTAATTTCAATC
AGGTCAAAAT--AA--AAA--ATCTAAGACAATTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATATTAAGAAT
AGACTATAGTAAAAAGTAAAAGGAAATGGAAAATGTGTGATATGCCGTGAATAGTTCCGTGGAAGAAAGTCTAATTTTCT
TATGTATAGAAC-TTTTTTTAACCATTCGTCATTTCTAGTAGAAATTATGAATTGGTATAATGGCTCTTTCTTACATTAC
AACTTACAATACAAGAGTTTCTTACAGGAGTGAAACAAAATTAAAGAAAAAGATTAAAGAATAACGTTTGACAAAATGAT
TAATGCAAAATGATCCATTAATGAAAATAATTGATACAACAATTTGATTACTTAATCAATTAGTAGTATCCCTAGAGTCC
ACTCCTTCCCCATACTACTAGTGAAAGAGAAAATGTAAAGACTACCATTAAAGTAGCCCAAGCGAGACTTACTATATCCA
TCTAAATTATGTCTCCTATTTCTATGAAGGGATT-----ATTCTATTCTACTATTGATCAATAATCATAGTGGAATCAAG
GGTACAGAGTCAAAA-A-GGGATTCCGCCCTAAGGTCATGGATCAATCAGTTCAAGGAATTTACTGCTAACAAATTCTTA
TAGGAATTCTGGTAGAATTAGAGAGCATTAAAAATACGATACTATAGCCCTTTTTTCCTTAAAAAAGAAAGAGTACGGGA
TTGATGTCCTGAATAGAAGAAGCGGGAATAGGAAGATTTTTTATTCCTTTTGTTACTCT
>chr1D_273
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TGCATCTCTCATTAAAGAGGGAGGGAAGGCATATAGGAATATTTTTTT
CACTACTCCCGATCGATAAAGATAAAAAAAGACACACATACGATATGTGGATTAGTAGAATTTAGGA----------TAT
TATATTACTCTATCTTTCTTTATGATGATACCATCCTCATCTTAATTTCCTATTCCACTCTTATGGAATAGAGTACCGGT
ATTTTACCGGAATCCATACATAAATCGTATTCCCTTTTTATTTCAGACCTCTTTTCCCCATCTCACTTCTACTGCTTATT
TGGATGTCTATGTGATCCATAGAAAGTTGGTCATATAATACATACACAATTGTATGTATAACTATAAGAAAAAGGAAGGG
AAATT----------------GTATAAGATTAAGAAAGTATAAGATTAAGAAAGCTCGTGGGTTAGACATATAGAAAAGA
AAAAGTAGAA-AAGGATTAAAAAAGAGGGAATTCCTAATCCAATCAAAAAACCCATTTTGGTCTTAGAGTGGATAGAGGA
TCTTCCTATGTTATATTATATAACTCTC--------------------ATCCATGAATTGATTTGATAGATCCGATATTC
ATAATATTGAATTGATTCAGTATTATCAGAATGCAAGCCCTACCCTTGAATTTACAAGATACCCCTTTTTCCTCTCCATG
GGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGTTTATGGAAGTCAATATTCTCGCATTTATTGCTACTACA
CTGTTCATTCTAGTTCCTACTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAATAATTAATTGGAATTCCA
ATTAATCATTGAAGAAATTAAAAAGGGATTAAATAAAAAAATCCAAGTCTTAAATGGAAGGATCTGGTTGGAATCTTAAA
CTGTGGTAGAAAGAACTACATATAGTTTTTTCTACGACACTTTAGGTTCTTTCTATTATATTATCTTTGAATCTAC----
-ATAGAATAGATTAGTAGATTGAAATAGTTAAGTAGTCTAATTCAATTTCTTTTTTCATTGCATCCACTTAATTTCAATC
AGGTCAAAAT-AAA--GAA--ATCTAAGACAATTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATATTAAGAAT
--------------------------------------------------------------------------------
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-----------------------------------------------------------
>chr2D_273
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TGCATCCCTCATTAAAGAGGGAGGGAACGCATATAGGAAT-TTTTTTT
CACTACTCCCGATC------GATAAAGAAAGACACACATACGATATGTGGATTAGTAGAATTTAGGA----------TAT
TGTATTACTCTATCTTTCTTTATGATGATACCATCCTCATCTTAATTTCCTATTCCACTCTTATGGAATAGAGTACCGGT
ATTTTACCGGAATGCATACATAAATCGTATTCCCTTTTTATTTCAGACCTCTTTTCCCCATCTCACTTCTACTGCTTATT
TGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATAATTGTAAGTATAACTATAAGAAAAAGGAAGGG
AAATT----------------GTATAAGATTAAGAAAGTAGAAGATTAAGAAAGCTCGTGGGTTAGAGATATAGAAAAGA
AAAAGTAGAA-AAGGATTAAAAAAGAGGGAATTCCTAATCCAATCAAAAAAGCCATTTTGGTCTTAGTGTGGATAGAGGA
TCTTCCTATGTTATACTATATAACTCTCATCCGTGAAATATAACTCTCATCCATGAATTGATTTGATAGATCCGATATTC
ATAATATTGAGTTGATTCAGTATTATCAGAATGCAAGCCCTACCCTTGAATTTACAAGATACCCCTTTTTCCTCTCCATG
GGATGACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCA
CTGTTCATTCTAGTTCCTACTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAATAATTAATTGGAATTCCA
ATTAATCATTGAAGAAATTAAAAAGGGATTAAATAAAAAAATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAA
GTGTGGTAGAAAGAACTACATATAGTTTTTTCTACGACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTAC----
-ATAGAATAGATTAGTAGATTGAAATAGTTAAGTAGTCTAATTCAATTTCTTTTTTCATTGCATCCACTTAATTTCAATC
AGGTCAAAAT-AAA--AAA--ATCTAAGACAATTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATATTAAGAAT
AGACTATAGTAAAAAGTAAAAGGAAATGGAAAATGTGTGATATGCCGTGAATAGTTCCGTGGAAGAAAGTCTAATTTTCT
TATGTATAGAAC-TTTTTTTAACCATTTGTCATTTCTAGTAGAAATTATGAATTGGTATAATGGCTCTTTCTTACATTAC
AACTTACAATACAAGAGTTTCTTACAGGAGTGAAACAAAACTAAAGAAAAAGATTAAAGAATAACGTTTGACAAAATGAT
TAATGCAAAATGATCCATTAATGAAAAGAATTGATACAACAATTTGATTACTTAATCAATTAGTAGTATCCCTAGAGTCC
ACTCCTTCCCCATACTACTAGTGAAAGAGAAAATGTAAAGACTACCATTAAAGCAGCCCAAGCGAGACTTACTATATCCA
TCAAAATTATGTCTCCTATTTCTATGAAGGGATT-----ATTCTATTCTACTATTGATCAATAATCATAGTGGAATCAAG
GGTACAGAGTCAAAA-A-GGGATTCCGCCCTAAGGCCATGGATCAATCAGTTCAAGGAATTTACTCCTAACAAATTCTTA
TAGGAATTCTGGTAGAATTATAGAGCATTAAAAATACGATACTATAGCCCTTTTTTCCTTAAAAAAGAAAGAGTACGGGA
ATGATGTCCTGAATAGAAGAAGCGGGAATAGGAAGATTTTTTATTCCTTTTGTTACTCT
>chr4B_273
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TGCATCTCTCATGAAAGAGGCAGGGAAGGCGTATAAGAAT--TTTTTT
CACTACTCCCGATCGATAAAGATAAAGAAAGACACACATACGATATGTGGATTAGTAGAATTTAGGA----------TAT
TATATTACTCTATCTTTCTTTATGATGATACCATCCTCATCTTAATTTCCTATTCCACTCTTATGGAATAGAGTACCGGT
ATTTTACCGGAATCCATACATAAATCATATTCCCTTTTTATTTCAGACCTCTTTTCCCCATCTCACTTCTACTGCTTATT
TGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATAATTGTGTGTATAACTATAAGAAAAAGGAAGGG
AAATT----------------GTATAAGATTAAGAAAGTATAAGATTAAGAAAGCTCATGGGTTAGAGATATAGAAAAGA
AAAAGTAGAA-AAGGATTAAAAAAGAGGGAATTCCTAATCCAATCAAAAAACCCATTTTGGTCTTAGTGTGGATAGAGGA
TCTTCCTATGTTATACTATATAACTCTCATCCGTGAAATATAACTCTTATCCATGAATTGATTTGATAGATCCAATATTC
ATAATATTCAATTGATTCAGTATTATCAGAATGCAAGCCCTACCCTTGAATTTACAAGATACCCCTTTTTCCTCTCCATG
GGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCA
CTGTTTACTCTAGTTCCTACTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAATAATTAATTGGAATTCCA
ATTAATCATTGAAGAAATTAAAAAGGGATTAAATAAAAAAATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAA
GTGTGGTAGAAAGAACTACATATAGTTTTTTCTACGACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTACGTAG
AATAGAATAGATTAGTAGATTGAAATAGTTAAGTAGTCTAATTCAATTTCTTTTTTCATTGCATCCACTTAATTTCAATC
AGGTCAAAAT-AAA--AAA--AATTAAGACAATTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATAGTAAGAAT
AGACTATAGTAAAAAGTAAAAGGAAATGGAAAATGTGTGATATGCCGTGAATAGTTCCATGGAAGAAGGTCTAATTTTCT
TATGTATAGAAC-TTTTTGT-ACCATTCGTCATTTCTAGTTGAAATTCTGAATTGGTATAATGGCTCTTTC-----TTAC
AACTTACAATACAAGAGTTTCTTACAGGAGTGAAACAAAACTAAAGAAATAGATTAAAGAATAACATTTGACAAAATGAT
TAATGCGAAATG-----TTAAAGAAAAGAATTGATACAACAATTTGATTACTTAATCAATTAGTAGTATCCCTAGAGTCC
ACTTCTTCCCCATACTACTAGTGAAAGAGAAAATGTAAAGACTACCATTAAAGCAGCCCAAGCGAGACTTACTATATCCA
TCTAAATTATGTCTCCTATTTCTATGAAGGGAT----------TATTGTACTATTGATAAATAATCATAGTGGAATCAAG
GGTACAGAGTC-AAA-A-GGGATTCCGCCCTAAGGCCATGGATCAATCAGTTCAAGGAATTTACTCCTAACAAATTCTTA
TAGGAATTCTGGTAGAATTAGAGAGCATTAAAAATACGATACTATAGCCCTTTTTTCCTTAAAAAAGAAAGAGTACGGGA
ATGATGTCCTGCATAGAAGAAGCGGGAATAGGAAGATTTTTTATTCCTTTTGTTACTCT
>chr4D_273
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TGCATCTCTCATTAAAGAGGGAGGGAAGGCATATAGGAAT--TTTTTT
CACTACTCCCGATCGATAAAGATAAAGAAAGACACACATACGATATGTGGATTAGTAGAATTTAGGA----------TAT
TATATTACTCTATCTTTCTTTATGATGACACCATCCTCATCTTAA----CTATTCCACTCTTATGGAATAGAGTACCGGT
ATTTTACTGGAATCCATACATAAATCATATTCCCTTTTTATTTCAGACCTCTTTTCGCCATCTCACTTCTACTGCTTATT
TGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATAATTGTATGTATAACTATAAGAAAAAGGAAGGG
AAATT----------------GTATAAGATTAAGAAAGT-TAAGATTAAGAAAGCTCGTGGGTTAGAGATATAGAAAAGA
AAAAGTAGAA-AAGGATTAGAAAAGAGGGAATTCCTAATCCAATCAAAAACCCCATTTTGGACTTAGTGTGGATAGAGGA
TCTTCCTATGTTATACTATATAACTCTCATCCGTGAAATATAACTCTCATCCATGAATTGATTTGATAGATCCGATATTC
ATAATATTGAATTGATTCAGTATTATCAGAATGCAAGCCCTACCCTTGAATTTACAAGATACCCCTTTTTCCTCTCCATG
GGATTACATCCCGAGTTATTGTGAAAATAAAAAATGAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCA
CTGTTCATTCTAGTTCCTACTTCTTTTT-ACTTATTATTTATGTAAAAATAGTCAGCCAAAATAATTAATTGG------A
ATTAATCATTGAAGAAATTAAAAAGGGATTAAATAAAAA-AACCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAA
GTGTGGTGGAAAGAACTACATATAGTTTTTTCTACCACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTAC----
-ATAGAATAGATTAGTAGATTGAAATAGTTAAGTAGTCTAATTCAATTTCTTTTTTCATTGCATCCACTTAATTTCAATC
AGGTCAAAAT-AAA---AA--ATCTAAGACAATTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAAATATATTAAGAAT
AGACTATAGTAAAAAGTAAAAGGAAATGGAAAATGTGTGATATGCCTTGAATAGTTCTGTGCAAGAAAGTCTAATTTTCT
TATGTATAGAAC-TATTTTTAACCATTCGTCATTTCTAGTAGAAATTCTGAATTGGTATAATGGCTCTTTCTTACATTAC
AACTTACAATACAAGAGTTTCTTACAAGAGTGAAACAAAACTAAAGAAAAAGATTAAAGAATAACGTTAGACAAAATGAT
TAATGCAAAATGATCCATTAAAGAAAAGAATTGATACAACAATTTTATTACTTAATCAATTAGTAGTATCCTTAGAGTCC
ACTCCTTCCCCATACTACTAGTGAAAGAGAAAATGCAAAGACTACCATTAAAGCAGCCCAAGCGAGACTTACTATATCCA
TCTAAATTATGTCTCCTATTTCTATGAAGGGAT----------TATTCTACTATTGATCAATAATCATAGTGGAATCAAG
GGTACAGAGTC-AAAAA-GGGATTCTGCCCTAAGGCCATGGATCAATCAGTTCAAGGAATTTACTCCTAACAAATTCTTA
TAGGAATTCTGGTAGAATTAGAGAGCATTAAAAATACGATACTATAGCCCTTTTTTCCTTAAAAAAGAAAGAGTACGGGA
ATGATGTCCTGAATAGAAGAAGCGGGAATAGGAAGATTTTTTATTCCTTTTGTTACTCT
>chr4A_427
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TACCATCCTCATCTTAATTTCCTATTCCACTCTTATGGAATAGAGTATCGGT
ATTTTACCGGAATCCATACATAAATCGTATTCCCTTTTTATTTCAGACCTCTTTTCCCCATCTCACTTCTACTGCTTATT
TGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATAATTGTATGTGTAACTATAAGAAAAAAGAAGGG
AAATT----------------GTATAAGATTAAGAAAGTATAAGATTAAGAAAGCTCGTGGGTTAGAGATATAGAAAAGA
AAAAGTAGAA-AAGGATTAAAAAAGAGGGAATTCCTAATCCAATCAGAAAACCCATTTTGGTCTTAGTGTGGATAGAGGA
TCTTCCTATGTTATACTATATAACTCTCATCCATGAAATATAACTCTCATCCATGAATTGATTTGATAGATCCGATATTC
ATAATATTGAATTGATTCAGTATTATCAGAATGCAAGCCCTACCCTTGAATTTACAAGATACCACTTTTCCCTCTCCATG
GGATTACATCCTGAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTAGTACA
CTATTCATTCTAGTTCCTGCTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAACCAAAATAATTAATTGGAATTCCA
ATTAATAATTGAAGAAATTAAAAATGGATTAAATAAAAA-ATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAA
GTGTGGTAGAAAGAACTACATATAGTTTTTTCTACGACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTAC----
-ATAGAATAGATTAGTAGATTGAAATAGTTAAGTAGTCTAATTCAATTTCTTTTTTCATTGCATCCACTTAATTTCAATC
AGGTCAAAAT-AAAAAAAA--ATCTAAGACAATTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATATTAAAAAT
AGACTATAGTAAATAGTAAAAGGAAATGGAAAATGTGTGATATGCCGTGAATAGTTTCGTGGAAGAAAGTCTAATTTTCT
TATGTATGGAAC-TTTTTTTAACCATTCGTCATTTCTAGTAGAAATTCTGAATTGGTATAATGGCTCTTTCTTACATTGC
AACTTACAATACAAGAGTTTCTTACAGGAGTGAAAAAAAACTAAAGAAAAAGATTAAAGAATAACATTTGACAAAATGAT
TAACGCAAAATGATCCATTAAAGAAAAGAATTGATACAACAATTTGATTACTTAATCAATTAGTAGTATCCCTAGAGTCC
ACTCCTTCCCCATACTACTAGTGAAATAGAAAATGTAAAGACTACCATTAAAGCAGCCCAAGCGAGACTTACTATATCCA
TCTAAATTATGTCTCCTATTTCTATGAAGGGAT----------TATTCTACTATTGATCAATAATCATAGTGGAATCAAG
GGTACAGAGTC-AAA-AAGGGATTCTGCCCTAAGGCCATGGATCAATCAGTTCAAGGAATTTACTCCTAACAAATTCTTA
TAGGAATTCTGGTAGAATTAGAGAGCATTAAAAATAGGATACTATAGCCCTTTTTTCCTTAAAAAAGAAAGAGTACGGGA
ATGATGTCCTGAATAGAAGAAGCGAGAATATGAAGATTTTTTATTCCTTTTGTTACTCT
>chr3D_805
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--------TGTTATACTATATAACTCTCATCCGTGAAATATAACTCTCATCCATGAATTGATTTGATAGATCCGATATTC
ATAATATTGAATTGGTTCAGTATTATCAGAATGCAAGCCATACCCTTGAATTTACAAGATACCCCTTTTTCCTCTCCATG
GGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCA
CTGTTCATTCTAGTTCCTACTTCTTTTT-ACTTATTATTTATGTAAAAACAGTCGGCCAAAATAATTAATTGGAATTCCA
ATTAATCATTGAAGAAATTAAAAAGGGATTAAATAAAAA-ATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAA
GTGTGGTAGAAAGAACTACATATAGTTTTTTCTATGACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTAC----
-ATAGAATAGATTAGTAGATTGAAATAGTTAAGTAGTCTAATTCAATTTCTTTTTTCATTGCATCCACTTAATTTCAATC
AGGTCAAAAT-AAA--AAA--ATCTAAGACAATTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATATTAAGAAT
AGACTATAGTAAAAAGTAAAAGGAAATGGAAAATGTGTGATATGCCGTGAATAGTTCCGTGGAAGAAAGTCTAATTTTCT
TATGTATAGAAC-TTTTTTTAACCATTCGTCATTTCTAGTAGAAATTCTAAATTGGTATAATGGCTCTTTCTTACATTAC
AACTTACAATACAAGAGTTTCTTACAGGAGTGAAACAAAACTAAAGAAAAAGATTAAAGAATAACGTTTGACAAAATGAT
TAATGCAAAATGATCCATTAAAGAAAAGAATTGATACAACAATTTGATTACTTAATCAATTAGTAGTATCCCTAGAGTCC
ACTCCTTCCCCATACTACTAGTGAAAGAGAAAATGTAAAGACTACCATTAAAGCAGCCCAAGCGAGACTTACTATATCCA
TCTAAATTATGTCTCCTATTTCTATGAAGGGAT----------TATTCTACTATTGATCAATAATCATAGTGGAATCAAG
GGTACAGAGTC-AAAAA-GGGATTCCGCCCTGAGGCCATGGATCAATCAGTTCAAGGAATTTACTCCTAACAAATTCTTA
TAGGAATTCTGG--------------------------------------------------------------------
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>chr5D_901
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------------------------ATCAGAATGCAAGCCCTACCCTTGAATTTACAAGATACCCCTTTTTCCTCTCCATG
GGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAG-CAATATTCTCGCATTTATTGCTACATCA
CTGTTCATTCTAGTTCCTACTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAATAATTAATTGGAATTCCA
ATTAATCATTGAAGAAATTAAAAAGGGATTAAATAAAAAAATCCAAGTCTTAAATGAAAGGGTCTGGTTGGAATCTTAAA
GTGTGGTAGAAAGAACTACATATAGTTTTTTCTAAGACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTAC----
-ATAGAATAGATTAGTAGATTGAAATAGTTAAGTAGTCTAATTCAATTTCTTTTTTCATTGCATCCACTTAATTTCAATC
AGATCAAAAT---AAAAAA--ATCTAAGACAATTCCTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATATTAATAAA
AGACTATAGTAAAAAGTAAAAGGAAATGGAAAATGTGTGATATGCCGTGAATAGTTCCGTGGAAGAAAGTCTAATTTTCT
TATGTATAGAACTTTTTTTTAACCATTCGTCATTTCTAGTAGAAATTCTGAATTGGTATAATGGCTCTTTCTTACATTAC
AACTTACAATACAAGAGTTTCTTACAGGAGTGAAACAAAACTAAATAAAAAGATTAAAGAATAACATTTGACAAAATGAT
TAATGCAAAATGATCCATTAAAGAAAAGAATTGATACAACAATTTGATTACTTAATCAATTAGTAGTATCCCTAGAGTCC
ACTCCTTCCCCATACTACTAGTGAAAGAGAAAATGTAAAGACTACCATTAAAGCAGCCCAAGCGAGACTTACTATATCCA
TCTAAATTATGTCTCCTATTTCTATGAAGGGAT----------TATTCTACTATTGATCAATAATCATAGTGGAATCAAG
GGTACAGAGTC-AAAAAA-GGATTCGGCCCTAAGGCCATGGATCAATCAGTTCAAGGAATTTACTCCTAACAAATTCTTA
TAGGAATTTGGGTAGAATTAGAGAGCATTAAAAATACGATACCATAGCCCTTTTTTCCTTAAAAAAGAAAGAGTACGGGA
ATGATGTCCTGAATAGAAGAAGCGGGAATAGGAAGATTTTTTATTCCTTTTGTTACTCT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-------------------S---------
-----S----S--------------S---------------S-------------------------SSSSSSSSSS---
--------S--------------------------------------------------------S--------------
------------------------------------S---------------------------------------S---
SSS----------------------------------------------------S------------------------
S----SSSSSSSSSSSSSSSS---------------------------------------S-----------------S-
-----------------------------------------------------------------S--------------
-------------------S---------------S--------------------------------------------
-----------------------------S---------------------------------S----------------
-------------------S--S---------------------------------------------------------
--------------------------------------------------------SS----------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
----------S---------------------S-----------------------------------------------
-----------------------------------------------------------S--------------------
--------S-----------------------------S--------------------------------S--------
--------------------------S------------------------------------------S----------
-------------------------------------S-S----------------------------------------
S----------------------------S-----------------------S--------------------------
--------------------------------------------------------------------------------
------S---S------------------S--------------------------------------------------
----------------------------------------------------------S---------------------
----------------------------------S------------------------
>forward_187
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-------CACGTGGGGTTAAGACTGCT-----------------------------------------------------
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>reverse_1761
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GCTCCTTCCCCATACTACTAGTG---------------------------------------------------------
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