Multiple sequence alignment - TraesCS3D01G195900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G195900 | chr3D | 100.000 | 2609 | 0 | 0 | 1 | 2609 | 191560550 | 191563158 | 0.000000e+00 | 4819.0 |
1 | TraesCS3D01G195900 | chr3D | 96.346 | 301 | 10 | 1 | 2281 | 2581 | 154025362 | 154025063 | 6.490000e-136 | 494.0 |
2 | TraesCS3D01G195900 | chr3D | 91.463 | 164 | 12 | 2 | 2040 | 2202 | 540569251 | 540569089 | 9.400000e-55 | 224.0 |
3 | TraesCS3D01G195900 | chr3A | 96.035 | 2270 | 47 | 8 | 54 | 2283 | 267042885 | 267045151 | 0.000000e+00 | 3653.0 |
4 | TraesCS3D01G195900 | chr3A | 91.411 | 163 | 13 | 1 | 2040 | 2202 | 675873021 | 675873182 | 3.380000e-54 | 222.0 |
5 | TraesCS3D01G195900 | chr3A | 100.000 | 67 | 0 | 0 | 1 | 67 | 267042776 | 267042842 | 9.800000e-25 | 124.0 |
6 | TraesCS3D01G195900 | chr3B | 96.256 | 1576 | 34 | 6 | 247 | 1822 | 276489239 | 276487689 | 0.000000e+00 | 2560.0 |
7 | TraesCS3D01G195900 | chr3B | 95.597 | 477 | 11 | 4 | 1816 | 2283 | 276482141 | 276481666 | 0.000000e+00 | 756.0 |
8 | TraesCS3D01G195900 | chr3B | 96.484 | 256 | 3 | 2 | 1 | 252 | 276491170 | 276490917 | 4.020000e-113 | 418.0 |
9 | TraesCS3D01G195900 | chr3B | 77.235 | 716 | 136 | 22 | 961 | 1661 | 229460874 | 229461577 | 6.770000e-106 | 394.0 |
10 | TraesCS3D01G195900 | chr3B | 100.000 | 33 | 0 | 0 | 2577 | 2609 | 276481667 | 276481635 | 7.800000e-06 | 62.1 |
11 | TraesCS3D01G195900 | chr1D | 78.504 | 842 | 164 | 11 | 830 | 1661 | 318090132 | 318090966 | 1.060000e-148 | 536.0 |
12 | TraesCS3D01G195900 | chr7B | 78.460 | 831 | 161 | 13 | 839 | 1659 | 362531638 | 362532460 | 6.400000e-146 | 527.0 |
13 | TraesCS3D01G195900 | chr7B | 77.646 | 841 | 155 | 25 | 842 | 1661 | 14900138 | 14900966 | 5.050000e-132 | 481.0 |
14 | TraesCS3D01G195900 | chr7B | 88.623 | 167 | 14 | 5 | 2040 | 2203 | 5919593 | 5919429 | 5.700000e-47 | 198.0 |
15 | TraesCS3D01G195900 | chr4D | 96.721 | 305 | 7 | 3 | 2281 | 2584 | 22687625 | 22687323 | 3.000000e-139 | 505.0 |
16 | TraesCS3D01G195900 | chr6D | 96.393 | 305 | 9 | 2 | 2281 | 2584 | 115514515 | 115514212 | 3.880000e-138 | 501.0 |
17 | TraesCS3D01G195900 | chr6D | 78.442 | 552 | 100 | 15 | 1122 | 1661 | 313026656 | 313026112 | 2.490000e-90 | 342.0 |
18 | TraesCS3D01G195900 | chr6D | 80.347 | 173 | 34 | 0 | 1293 | 1465 | 470390549 | 470390721 | 5.860000e-27 | 132.0 |
19 | TraesCS3D01G195900 | chr5A | 96.656 | 299 | 9 | 1 | 2280 | 2578 | 687280672 | 687280375 | 1.800000e-136 | 496.0 |
20 | TraesCS3D01G195900 | chr5A | 77.273 | 814 | 154 | 23 | 868 | 1661 | 579411643 | 579412445 | 1.420000e-122 | 449.0 |
21 | TraesCS3D01G195900 | chr1A | 94.969 | 318 | 12 | 4 | 2274 | 2589 | 15036933 | 15036618 | 1.800000e-136 | 496.0 |
22 | TraesCS3D01G195900 | chr1A | 94.654 | 318 | 13 | 4 | 2274 | 2589 | 15080325 | 15080010 | 8.390000e-135 | 490.0 |
23 | TraesCS3D01G195900 | chr1A | 94.654 | 318 | 13 | 4 | 2274 | 2589 | 15124188 | 15123873 | 8.390000e-135 | 490.0 |
24 | TraesCS3D01G195900 | chr1A | 94.062 | 320 | 17 | 2 | 2272 | 2591 | 23820248 | 23819931 | 3.900000e-133 | 484.0 |
25 | TraesCS3D01G195900 | chr1A | 77.646 | 841 | 155 | 26 | 842 | 1661 | 452051912 | 452052740 | 5.050000e-132 | 481.0 |
26 | TraesCS3D01G195900 | chr4A | 79.408 | 743 | 119 | 24 | 824 | 1555 | 728435725 | 728436444 | 6.490000e-136 | 494.0 |
27 | TraesCS3D01G195900 | chr6A | 95.208 | 313 | 12 | 3 | 2268 | 2579 | 579017331 | 579017641 | 2.330000e-135 | 492.0 |
28 | TraesCS3D01G195900 | chr6A | 91.304 | 161 | 13 | 1 | 2040 | 2200 | 47466949 | 47466790 | 4.370000e-53 | 219.0 |
29 | TraesCS3D01G195900 | chr7A | 79.155 | 686 | 105 | 23 | 852 | 1516 | 9326815 | 9326147 | 8.570000e-120 | 440.0 |
30 | TraesCS3D01G195900 | chr5D | 90.361 | 166 | 14 | 1 | 2040 | 2203 | 399614684 | 399614519 | 1.570000e-52 | 217.0 |
31 | TraesCS3D01G195900 | chr5B | 90.361 | 166 | 14 | 1 | 2040 | 2203 | 479726997 | 479726832 | 1.570000e-52 | 217.0 |
32 | TraesCS3D01G195900 | chr2B | 86.592 | 179 | 21 | 2 | 2034 | 2209 | 91040239 | 91040417 | 7.370000e-46 | 195.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G195900 | chr3D | 191560550 | 191563158 | 2608 | False | 4819.00 | 4819 | 100.0000 | 1 | 2609 | 1 | chr3D.!!$F1 | 2608 |
1 | TraesCS3D01G195900 | chr3A | 267042776 | 267045151 | 2375 | False | 1888.50 | 3653 | 98.0175 | 1 | 2283 | 2 | chr3A.!!$F2 | 2282 |
2 | TraesCS3D01G195900 | chr3B | 276487689 | 276491170 | 3481 | True | 1489.00 | 2560 | 96.3700 | 1 | 1822 | 2 | chr3B.!!$R2 | 1821 |
3 | TraesCS3D01G195900 | chr3B | 276481635 | 276482141 | 506 | True | 409.05 | 756 | 97.7985 | 1816 | 2609 | 2 | chr3B.!!$R1 | 793 |
4 | TraesCS3D01G195900 | chr3B | 229460874 | 229461577 | 703 | False | 394.00 | 394 | 77.2350 | 961 | 1661 | 1 | chr3B.!!$F1 | 700 |
5 | TraesCS3D01G195900 | chr1D | 318090132 | 318090966 | 834 | False | 536.00 | 536 | 78.5040 | 830 | 1661 | 1 | chr1D.!!$F1 | 831 |
6 | TraesCS3D01G195900 | chr7B | 362531638 | 362532460 | 822 | False | 527.00 | 527 | 78.4600 | 839 | 1659 | 1 | chr7B.!!$F2 | 820 |
7 | TraesCS3D01G195900 | chr7B | 14900138 | 14900966 | 828 | False | 481.00 | 481 | 77.6460 | 842 | 1661 | 1 | chr7B.!!$F1 | 819 |
8 | TraesCS3D01G195900 | chr6D | 313026112 | 313026656 | 544 | True | 342.00 | 342 | 78.4420 | 1122 | 1661 | 1 | chr6D.!!$R2 | 539 |
9 | TraesCS3D01G195900 | chr5A | 579411643 | 579412445 | 802 | False | 449.00 | 449 | 77.2730 | 868 | 1661 | 1 | chr5A.!!$F1 | 793 |
10 | TraesCS3D01G195900 | chr1A | 452051912 | 452052740 | 828 | False | 481.00 | 481 | 77.6460 | 842 | 1661 | 1 | chr1A.!!$F1 | 819 |
11 | TraesCS3D01G195900 | chr4A | 728435725 | 728436444 | 719 | False | 494.00 | 494 | 79.4080 | 824 | 1555 | 1 | chr4A.!!$F1 | 731 |
12 | TraesCS3D01G195900 | chr7A | 9326147 | 9326815 | 668 | True | 440.00 | 440 | 79.1550 | 852 | 1516 | 1 | chr7A.!!$R1 | 664 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
477 | 2217 | 4.227864 | AGCTTTCTTATTGGAGTCTGGG | 57.772 | 45.455 | 0.0 | 0.0 | 0.0 | 4.45 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2348 | 4171 | 0.033781 | TGCATGCACCTTTCCAAAGC | 59.966 | 50.0 | 18.46 | 0.0 | 34.69 | 3.51 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
254 | 1994 | 5.043903 | CGGAAGAATCACGATGTTACTCAT | 58.956 | 41.667 | 0.00 | 0.00 | 39.77 | 2.90 |
311 | 2051 | 4.510167 | AAGAATACTCCACATGGAAGGG | 57.490 | 45.455 | 1.50 | 0.00 | 44.91 | 3.95 |
394 | 2134 | 4.390129 | TTGAATTAAGGTAGGGGCAACA | 57.610 | 40.909 | 0.00 | 0.00 | 39.74 | 3.33 |
422 | 2162 | 5.888161 | AGGACATTTGGATCATAACTCAACC | 59.112 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
477 | 2217 | 4.227864 | AGCTTTCTTATTGGAGTCTGGG | 57.772 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
1073 | 2861 | 3.399181 | GGTGGTGATCCTGGCGGA | 61.399 | 66.667 | 0.00 | 0.00 | 45.16 | 5.54 |
1108 | 2896 | 2.511373 | TGCTGCTATGGAACGCGG | 60.511 | 61.111 | 12.47 | 0.00 | 35.65 | 6.46 |
1148 | 2936 | 2.109126 | GCTCGACTGGTTCCATGCC | 61.109 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
1267 | 3055 | 0.038744 | CTGGTGGCTGATTGGGACTT | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1454 | 3258 | 1.278127 | CGTCCCAAGTGGTATTGTCCT | 59.722 | 52.381 | 0.00 | 0.00 | 34.77 | 3.85 |
1775 | 3589 | 6.473397 | CTCTGTAAAGGAGCAGTTTTGTAG | 57.527 | 41.667 | 0.00 | 0.00 | 34.57 | 2.74 |
1927 | 3741 | 7.562454 | TGCAATTCTCCAATCTTTCCTCATTAT | 59.438 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
1997 | 3811 | 5.597182 | CAGCTAGTATCCCACCAAGTAACTA | 59.403 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1998 | 3812 | 6.097839 | CAGCTAGTATCCCACCAAGTAACTAA | 59.902 | 42.308 | 0.00 | 0.00 | 0.00 | 2.24 |
2010 | 3830 | 0.109781 | GTAACTAACGACGTCGGCCA | 60.110 | 55.000 | 37.89 | 22.39 | 44.95 | 5.36 |
2041 | 3861 | 8.801715 | AATTTATTCTGCACACAAGTTACAAG | 57.198 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
2093 | 3916 | 2.121963 | TGGCCTGGAGGTCCTGTT | 60.122 | 61.111 | 3.32 | 0.00 | 39.61 | 3.16 |
2174 | 3997 | 1.553884 | CCCTAGACCCCACCTTGTGTA | 60.554 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 |
2265 | 4088 | 9.930693 | TGTTTACTTGTTTGGTTTTAGACATTT | 57.069 | 25.926 | 0.00 | 0.00 | 0.00 | 2.32 |
2283 | 4106 | 6.002062 | ACATTTGTGTTTCTTAGCAGCTAC | 57.998 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
2284 | 4107 | 5.765182 | ACATTTGTGTTTCTTAGCAGCTACT | 59.235 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2285 | 4108 | 5.924475 | TTTGTGTTTCTTAGCAGCTACTC | 57.076 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
2286 | 4109 | 3.926616 | TGTGTTTCTTAGCAGCTACTCC | 58.073 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
2287 | 4110 | 3.263261 | GTGTTTCTTAGCAGCTACTCCC | 58.737 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2288 | 4111 | 3.055747 | GTGTTTCTTAGCAGCTACTCCCT | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
2289 | 4112 | 3.195825 | TGTTTCTTAGCAGCTACTCCCTC | 59.804 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2290 | 4113 | 2.074729 | TCTTAGCAGCTACTCCCTCC | 57.925 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2291 | 4114 | 0.671251 | CTTAGCAGCTACTCCCTCCG | 59.329 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2292 | 4115 | 0.033405 | TTAGCAGCTACTCCCTCCGT | 60.033 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2293 | 4116 | 0.465824 | TAGCAGCTACTCCCTCCGTC | 60.466 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2294 | 4117 | 1.755008 | GCAGCTACTCCCTCCGTCT | 60.755 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
2295 | 4118 | 2.010582 | GCAGCTACTCCCTCCGTCTG | 62.011 | 65.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2296 | 4119 | 1.076632 | AGCTACTCCCTCCGTCTGG | 60.077 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
2297 | 4120 | 2.128507 | GCTACTCCCTCCGTCTGGG | 61.129 | 68.421 | 0.00 | 0.00 | 45.90 | 4.45 |
2298 | 4121 | 1.306970 | CTACTCCCTCCGTCTGGGT | 59.693 | 63.158 | 0.00 | 0.00 | 44.84 | 4.51 |
2299 | 4122 | 0.324460 | CTACTCCCTCCGTCTGGGTT | 60.324 | 60.000 | 0.00 | 0.00 | 44.84 | 4.11 |
2300 | 4123 | 0.115745 | TACTCCCTCCGTCTGGGTTT | 59.884 | 55.000 | 0.00 | 0.00 | 44.84 | 3.27 |
2301 | 4124 | 0.115745 | ACTCCCTCCGTCTGGGTTTA | 59.884 | 55.000 | 0.00 | 0.00 | 44.84 | 2.01 |
2302 | 4125 | 1.273666 | ACTCCCTCCGTCTGGGTTTAT | 60.274 | 52.381 | 0.00 | 0.00 | 44.84 | 1.40 |
2303 | 4126 | 1.838077 | CTCCCTCCGTCTGGGTTTATT | 59.162 | 52.381 | 0.00 | 0.00 | 44.84 | 1.40 |
2304 | 4127 | 3.036091 | CTCCCTCCGTCTGGGTTTATTA | 58.964 | 50.000 | 0.00 | 0.00 | 44.84 | 0.98 |
2305 | 4128 | 3.036091 | TCCCTCCGTCTGGGTTTATTAG | 58.964 | 50.000 | 0.00 | 0.00 | 44.84 | 1.73 |
2306 | 4129 | 2.104281 | CCCTCCGTCTGGGTTTATTAGG | 59.896 | 54.545 | 0.00 | 0.00 | 39.82 | 2.69 |
2307 | 4130 | 2.484947 | CCTCCGTCTGGGTTTATTAGGC | 60.485 | 54.545 | 0.00 | 0.00 | 37.00 | 3.93 |
2308 | 4131 | 1.487558 | TCCGTCTGGGTTTATTAGGCC | 59.512 | 52.381 | 0.00 | 0.00 | 37.00 | 5.19 |
2309 | 4132 | 1.489230 | CCGTCTGGGTTTATTAGGCCT | 59.511 | 52.381 | 11.78 | 11.78 | 0.00 | 5.19 |
2310 | 4133 | 2.484947 | CCGTCTGGGTTTATTAGGCCTC | 60.485 | 54.545 | 9.68 | 0.00 | 0.00 | 4.70 |
2311 | 4134 | 2.434702 | CGTCTGGGTTTATTAGGCCTCT | 59.565 | 50.000 | 9.68 | 0.00 | 0.00 | 3.69 |
2312 | 4135 | 3.492829 | CGTCTGGGTTTATTAGGCCTCTC | 60.493 | 52.174 | 9.68 | 0.00 | 0.00 | 3.20 |
2313 | 4136 | 3.454812 | GTCTGGGTTTATTAGGCCTCTCA | 59.545 | 47.826 | 9.68 | 0.00 | 0.00 | 3.27 |
2314 | 4137 | 3.711704 | TCTGGGTTTATTAGGCCTCTCAG | 59.288 | 47.826 | 9.68 | 9.85 | 0.00 | 3.35 |
2315 | 4138 | 2.172717 | TGGGTTTATTAGGCCTCTCAGC | 59.827 | 50.000 | 9.68 | 0.00 | 0.00 | 4.26 |
2316 | 4139 | 2.172717 | GGGTTTATTAGGCCTCTCAGCA | 59.827 | 50.000 | 9.68 | 0.00 | 0.00 | 4.41 |
2317 | 4140 | 3.181439 | GGGTTTATTAGGCCTCTCAGCAT | 60.181 | 47.826 | 9.68 | 0.00 | 0.00 | 3.79 |
2318 | 4141 | 4.068599 | GGTTTATTAGGCCTCTCAGCATC | 58.931 | 47.826 | 9.68 | 0.00 | 0.00 | 3.91 |
2319 | 4142 | 4.444876 | GGTTTATTAGGCCTCTCAGCATCA | 60.445 | 45.833 | 9.68 | 0.00 | 0.00 | 3.07 |
2320 | 4143 | 2.926778 | ATTAGGCCTCTCAGCATCAC | 57.073 | 50.000 | 9.68 | 0.00 | 0.00 | 3.06 |
2321 | 4144 | 1.571955 | TTAGGCCTCTCAGCATCACA | 58.428 | 50.000 | 9.68 | 0.00 | 0.00 | 3.58 |
2322 | 4145 | 1.571955 | TAGGCCTCTCAGCATCACAA | 58.428 | 50.000 | 9.68 | 0.00 | 0.00 | 3.33 |
2323 | 4146 | 0.252479 | AGGCCTCTCAGCATCACAAG | 59.748 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2324 | 4147 | 1.375098 | GGCCTCTCAGCATCACAAGC | 61.375 | 60.000 | 0.00 | 0.00 | 0.00 | 4.01 |
2325 | 4148 | 0.675837 | GCCTCTCAGCATCACAAGCA | 60.676 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2326 | 4149 | 2.017623 | GCCTCTCAGCATCACAAGCAT | 61.018 | 52.381 | 0.00 | 0.00 | 0.00 | 3.79 |
2327 | 4150 | 1.671328 | CCTCTCAGCATCACAAGCATG | 59.329 | 52.381 | 0.00 | 0.00 | 0.00 | 4.06 |
2328 | 4151 | 2.357075 | CTCTCAGCATCACAAGCATGT | 58.643 | 47.619 | 0.00 | 0.00 | 41.61 | 3.21 |
2329 | 4152 | 2.352034 | CTCTCAGCATCACAAGCATGTC | 59.648 | 50.000 | 0.00 | 0.00 | 37.82 | 3.06 |
2330 | 4153 | 1.400846 | CTCAGCATCACAAGCATGTCC | 59.599 | 52.381 | 0.00 | 0.00 | 37.82 | 4.02 |
2331 | 4154 | 0.454600 | CAGCATCACAAGCATGTCCC | 59.545 | 55.000 | 0.00 | 0.00 | 37.82 | 4.46 |
2332 | 4155 | 0.682209 | AGCATCACAAGCATGTCCCC | 60.682 | 55.000 | 0.00 | 0.00 | 37.82 | 4.81 |
2333 | 4156 | 1.669999 | GCATCACAAGCATGTCCCCC | 61.670 | 60.000 | 0.00 | 0.00 | 37.82 | 5.40 |
2334 | 4157 | 0.033796 | CATCACAAGCATGTCCCCCT | 60.034 | 55.000 | 0.00 | 0.00 | 37.82 | 4.79 |
2335 | 4158 | 0.706433 | ATCACAAGCATGTCCCCCTT | 59.294 | 50.000 | 0.00 | 0.00 | 37.82 | 3.95 |
2336 | 4159 | 0.482446 | TCACAAGCATGTCCCCCTTT | 59.518 | 50.000 | 0.00 | 0.00 | 37.82 | 3.11 |
2337 | 4160 | 1.133199 | TCACAAGCATGTCCCCCTTTT | 60.133 | 47.619 | 0.00 | 0.00 | 37.82 | 2.27 |
2338 | 4161 | 2.109128 | TCACAAGCATGTCCCCCTTTTA | 59.891 | 45.455 | 0.00 | 0.00 | 37.82 | 1.52 |
2339 | 4162 | 3.099141 | CACAAGCATGTCCCCCTTTTAT | 58.901 | 45.455 | 0.00 | 0.00 | 37.82 | 1.40 |
2340 | 4163 | 4.017958 | TCACAAGCATGTCCCCCTTTTATA | 60.018 | 41.667 | 0.00 | 0.00 | 37.82 | 0.98 |
2341 | 4164 | 4.709397 | CACAAGCATGTCCCCCTTTTATAA | 59.291 | 41.667 | 0.00 | 0.00 | 37.82 | 0.98 |
2342 | 4165 | 4.956075 | ACAAGCATGTCCCCCTTTTATAAG | 59.044 | 41.667 | 0.00 | 0.00 | 33.41 | 1.73 |
2343 | 4166 | 6.103415 | ACAAGCATGTCCCCCTTTTATAAGG | 61.103 | 44.000 | 5.04 | 5.04 | 42.55 | 2.69 |
2350 | 4173 | 3.821306 | CCTTTTATAAGGCCCCGCT | 57.179 | 52.632 | 0.00 | 0.00 | 44.27 | 5.52 |
2351 | 4174 | 2.067365 | CCTTTTATAAGGCCCCGCTT | 57.933 | 50.000 | 0.00 | 0.00 | 44.27 | 4.68 |
2352 | 4175 | 2.384828 | CCTTTTATAAGGCCCCGCTTT | 58.615 | 47.619 | 0.00 | 0.00 | 44.27 | 3.51 |
2353 | 4176 | 2.100749 | CCTTTTATAAGGCCCCGCTTTG | 59.899 | 50.000 | 0.00 | 0.00 | 44.27 | 2.77 |
2354 | 4177 | 1.770294 | TTTATAAGGCCCCGCTTTGG | 58.230 | 50.000 | 0.00 | 0.00 | 37.55 | 3.28 |
2355 | 4178 | 0.920438 | TTATAAGGCCCCGCTTTGGA | 59.080 | 50.000 | 0.00 | 0.00 | 42.00 | 3.53 |
2356 | 4179 | 0.920438 | TATAAGGCCCCGCTTTGGAA | 59.080 | 50.000 | 0.00 | 0.00 | 42.00 | 3.53 |
2357 | 4180 | 0.040499 | ATAAGGCCCCGCTTTGGAAA | 59.960 | 50.000 | 0.00 | 0.00 | 42.00 | 3.13 |
2358 | 4181 | 0.610785 | TAAGGCCCCGCTTTGGAAAG | 60.611 | 55.000 | 0.00 | 0.00 | 42.00 | 2.62 |
2359 | 4182 | 3.381983 | GGCCCCGCTTTGGAAAGG | 61.382 | 66.667 | 0.00 | 0.00 | 42.00 | 3.11 |
2360 | 4183 | 2.600470 | GCCCCGCTTTGGAAAGGT | 60.600 | 61.111 | 1.45 | 0.00 | 42.00 | 3.50 |
2361 | 4184 | 2.931068 | GCCCCGCTTTGGAAAGGTG | 61.931 | 63.158 | 1.45 | 0.00 | 42.00 | 4.00 |
2362 | 4185 | 2.650778 | CCCGCTTTGGAAAGGTGC | 59.349 | 61.111 | 1.45 | 0.00 | 42.00 | 5.01 |
2363 | 4186 | 2.199652 | CCCGCTTTGGAAAGGTGCA | 61.200 | 57.895 | 1.45 | 0.00 | 42.00 | 4.57 |
2364 | 4187 | 1.535204 | CCCGCTTTGGAAAGGTGCAT | 61.535 | 55.000 | 0.00 | 0.00 | 42.00 | 3.96 |
2365 | 4188 | 0.388907 | CCGCTTTGGAAAGGTGCATG | 60.389 | 55.000 | 0.00 | 0.00 | 42.00 | 4.06 |
2366 | 4189 | 1.010419 | CGCTTTGGAAAGGTGCATGC | 61.010 | 55.000 | 11.82 | 11.82 | 36.53 | 4.06 |
2367 | 4190 | 0.033781 | GCTTTGGAAAGGTGCATGCA | 59.966 | 50.000 | 18.46 | 18.46 | 36.53 | 3.96 |
2368 | 4191 | 1.338389 | GCTTTGGAAAGGTGCATGCAT | 60.338 | 47.619 | 25.64 | 7.59 | 36.53 | 3.96 |
2369 | 4192 | 2.343101 | CTTTGGAAAGGTGCATGCATG | 58.657 | 47.619 | 25.64 | 22.70 | 32.40 | 4.06 |
2370 | 4193 | 3.502678 | CTTTGGAAAGGTGCATGCATGC | 61.503 | 50.000 | 38.71 | 38.71 | 41.84 | 4.06 |
2383 | 4206 | 4.271590 | CATGCATGCAACCATTTCATTG | 57.728 | 40.909 | 26.68 | 10.40 | 0.00 | 2.82 |
2384 | 4207 | 2.701107 | TGCATGCAACCATTTCATTGG | 58.299 | 42.857 | 20.30 | 0.00 | 42.82 | 3.16 |
2395 | 4218 | 5.943706 | CCATTTCATTGGTTGCATTGAAA | 57.056 | 34.783 | 0.00 | 0.00 | 40.99 | 2.69 |
2396 | 4219 | 6.315091 | CCATTTCATTGGTTGCATTGAAAA | 57.685 | 33.333 | 0.03 | 0.00 | 40.36 | 2.29 |
2397 | 4220 | 6.144175 | CCATTTCATTGGTTGCATTGAAAAC | 58.856 | 36.000 | 0.03 | 0.00 | 40.36 | 2.43 |
2398 | 4221 | 5.747951 | TTTCATTGGTTGCATTGAAAACC | 57.252 | 34.783 | 12.44 | 12.44 | 45.11 | 3.27 |
2405 | 4228 | 4.846509 | GGTTGCATTGAAAACCATTGTTG | 58.153 | 39.130 | 13.81 | 0.00 | 44.41 | 3.33 |
2406 | 4229 | 4.335037 | GGTTGCATTGAAAACCATTGTTGT | 59.665 | 37.500 | 13.81 | 0.00 | 44.41 | 3.32 |
2407 | 4230 | 5.163673 | GGTTGCATTGAAAACCATTGTTGTT | 60.164 | 36.000 | 13.81 | 0.00 | 44.41 | 2.83 |
2408 | 4231 | 5.481200 | TGCATTGAAAACCATTGTTGTTG | 57.519 | 34.783 | 0.00 | 0.00 | 34.13 | 3.33 |
2409 | 4232 | 4.334759 | TGCATTGAAAACCATTGTTGTTGG | 59.665 | 37.500 | 0.00 | 0.00 | 40.26 | 3.77 |
2411 | 4234 | 5.730010 | GCATTGAAAACCATTGTTGTTGGTG | 60.730 | 40.000 | 0.00 | 0.00 | 46.75 | 4.17 |
2412 | 4235 | 3.265791 | TGAAAACCATTGTTGTTGGTGC | 58.734 | 40.909 | 0.00 | 0.00 | 46.75 | 5.01 |
2413 | 4236 | 2.323968 | AAACCATTGTTGTTGGTGCC | 57.676 | 45.000 | 0.00 | 0.00 | 46.75 | 5.01 |
2414 | 4237 | 1.198713 | AACCATTGTTGTTGGTGCCA | 58.801 | 45.000 | 0.00 | 0.00 | 46.75 | 4.92 |
2415 | 4238 | 1.422531 | ACCATTGTTGTTGGTGCCAT | 58.577 | 45.000 | 0.00 | 0.00 | 45.71 | 4.40 |
2416 | 4239 | 1.070445 | ACCATTGTTGTTGGTGCCATG | 59.930 | 47.619 | 0.00 | 0.00 | 45.71 | 3.66 |
2417 | 4240 | 1.608542 | CCATTGTTGTTGGTGCCATGG | 60.609 | 52.381 | 7.63 | 7.63 | 0.00 | 3.66 |
2418 | 4241 | 0.035176 | ATTGTTGTTGGTGCCATGGC | 59.965 | 50.000 | 30.54 | 30.54 | 42.35 | 4.40 |
2419 | 4242 | 1.047596 | TTGTTGTTGGTGCCATGGCT | 61.048 | 50.000 | 35.53 | 0.00 | 42.51 | 4.75 |
2420 | 4243 | 1.005867 | GTTGTTGGTGCCATGGCTG | 60.006 | 57.895 | 35.53 | 0.00 | 42.51 | 4.85 |
2421 | 4244 | 1.152589 | TTGTTGGTGCCATGGCTGA | 60.153 | 52.632 | 35.53 | 15.87 | 42.51 | 4.26 |
2422 | 4245 | 0.758310 | TTGTTGGTGCCATGGCTGAA | 60.758 | 50.000 | 35.53 | 22.05 | 42.51 | 3.02 |
2423 | 4246 | 0.758310 | TGTTGGTGCCATGGCTGAAA | 60.758 | 50.000 | 35.53 | 23.07 | 42.51 | 2.69 |
2424 | 4247 | 0.392336 | GTTGGTGCCATGGCTGAAAA | 59.608 | 50.000 | 35.53 | 21.39 | 42.51 | 2.29 |
2425 | 4248 | 1.126488 | TTGGTGCCATGGCTGAAAAA | 58.874 | 45.000 | 35.53 | 19.74 | 42.51 | 1.94 |
2426 | 4249 | 1.350071 | TGGTGCCATGGCTGAAAAAT | 58.650 | 45.000 | 35.53 | 0.00 | 42.51 | 1.82 |
2427 | 4250 | 1.698532 | TGGTGCCATGGCTGAAAAATT | 59.301 | 42.857 | 35.53 | 0.00 | 42.51 | 1.82 |
2428 | 4251 | 2.902486 | TGGTGCCATGGCTGAAAAATTA | 59.098 | 40.909 | 35.53 | 11.01 | 42.51 | 1.40 |
2429 | 4252 | 3.326006 | TGGTGCCATGGCTGAAAAATTAA | 59.674 | 39.130 | 35.53 | 10.21 | 42.51 | 1.40 |
2430 | 4253 | 4.019501 | TGGTGCCATGGCTGAAAAATTAAT | 60.020 | 37.500 | 35.53 | 0.00 | 42.51 | 1.40 |
2431 | 4254 | 5.188555 | TGGTGCCATGGCTGAAAAATTAATA | 59.811 | 36.000 | 35.53 | 9.43 | 42.51 | 0.98 |
2432 | 4255 | 5.523552 | GGTGCCATGGCTGAAAAATTAATAC | 59.476 | 40.000 | 35.53 | 20.28 | 42.51 | 1.89 |
2433 | 4256 | 6.105333 | GTGCCATGGCTGAAAAATTAATACA | 58.895 | 36.000 | 35.53 | 8.25 | 42.51 | 2.29 |
2434 | 4257 | 6.035975 | GTGCCATGGCTGAAAAATTAATACAC | 59.964 | 38.462 | 35.53 | 16.52 | 42.51 | 2.90 |
2435 | 4258 | 6.070881 | TGCCATGGCTGAAAAATTAATACACT | 60.071 | 34.615 | 35.53 | 0.00 | 42.51 | 3.55 |
2436 | 4259 | 6.818142 | GCCATGGCTGAAAAATTAATACACTT | 59.182 | 34.615 | 29.98 | 0.00 | 38.26 | 3.16 |
2437 | 4260 | 7.010460 | GCCATGGCTGAAAAATTAATACACTTC | 59.990 | 37.037 | 29.98 | 0.00 | 38.26 | 3.01 |
2438 | 4261 | 8.034215 | CCATGGCTGAAAAATTAATACACTTCA | 58.966 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
2439 | 4262 | 9.590451 | CATGGCTGAAAAATTAATACACTTCAT | 57.410 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2440 | 4263 | 8.984891 | TGGCTGAAAAATTAATACACTTCATG | 57.015 | 30.769 | 0.00 | 0.00 | 0.00 | 3.07 |
2441 | 4264 | 7.545265 | TGGCTGAAAAATTAATACACTTCATGC | 59.455 | 33.333 | 0.00 | 2.82 | 0.00 | 4.06 |
2442 | 4265 | 7.253750 | GGCTGAAAAATTAATACACTTCATGCG | 60.254 | 37.037 | 0.00 | 0.00 | 0.00 | 4.73 |
2443 | 4266 | 7.273381 | GCTGAAAAATTAATACACTTCATGCGT | 59.727 | 33.333 | 0.00 | 0.00 | 0.00 | 5.24 |
2444 | 4267 | 8.446489 | TGAAAAATTAATACACTTCATGCGTG | 57.554 | 30.769 | 11.82 | 11.82 | 38.32 | 5.34 |
2445 | 4268 | 6.869421 | AAAATTAATACACTTCATGCGTGC | 57.131 | 33.333 | 12.93 | 0.00 | 35.84 | 5.34 |
2446 | 4269 | 5.818136 | AATTAATACACTTCATGCGTGCT | 57.182 | 34.783 | 12.93 | 5.55 | 35.84 | 4.40 |
2447 | 4270 | 5.818136 | ATTAATACACTTCATGCGTGCTT | 57.182 | 34.783 | 12.93 | 10.04 | 35.84 | 3.91 |
2448 | 4271 | 5.621197 | TTAATACACTTCATGCGTGCTTT | 57.379 | 34.783 | 12.93 | 9.91 | 35.84 | 3.51 |
2449 | 4272 | 4.503741 | AATACACTTCATGCGTGCTTTT | 57.496 | 36.364 | 12.93 | 4.32 | 35.84 | 2.27 |
2450 | 4273 | 2.869233 | ACACTTCATGCGTGCTTTTT | 57.131 | 40.000 | 12.93 | 0.00 | 35.84 | 1.94 |
2451 | 4274 | 2.731217 | ACACTTCATGCGTGCTTTTTC | 58.269 | 42.857 | 12.93 | 0.00 | 35.84 | 2.29 |
2452 | 4275 | 2.098934 | ACACTTCATGCGTGCTTTTTCA | 59.901 | 40.909 | 12.93 | 0.00 | 35.84 | 2.69 |
2453 | 4276 | 3.243501 | ACACTTCATGCGTGCTTTTTCAT | 60.244 | 39.130 | 12.93 | 0.00 | 35.84 | 2.57 |
2454 | 4277 | 3.737266 | CACTTCATGCGTGCTTTTTCATT | 59.263 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2455 | 4278 | 3.737266 | ACTTCATGCGTGCTTTTTCATTG | 59.263 | 39.130 | 0.00 | 0.00 | 0.00 | 2.82 |
2456 | 4279 | 2.674954 | TCATGCGTGCTTTTTCATTGG | 58.325 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
2457 | 4280 | 1.127213 | CATGCGTGCTTTTTCATTGGC | 59.873 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
2458 | 4281 | 0.388659 | TGCGTGCTTTTTCATTGGCT | 59.611 | 45.000 | 0.00 | 0.00 | 0.00 | 4.75 |
2459 | 4282 | 0.785979 | GCGTGCTTTTTCATTGGCTG | 59.214 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2460 | 4283 | 0.785979 | CGTGCTTTTTCATTGGCTGC | 59.214 | 50.000 | 0.00 | 0.00 | 0.00 | 5.25 |
2461 | 4284 | 1.868469 | GTGCTTTTTCATTGGCTGCA | 58.132 | 45.000 | 0.50 | 0.00 | 0.00 | 4.41 |
2462 | 4285 | 2.419667 | GTGCTTTTTCATTGGCTGCAT | 58.580 | 42.857 | 0.50 | 0.00 | 0.00 | 3.96 |
2463 | 4286 | 2.158841 | GTGCTTTTTCATTGGCTGCATG | 59.841 | 45.455 | 0.50 | 0.00 | 0.00 | 4.06 |
2464 | 4287 | 1.129811 | GCTTTTTCATTGGCTGCATGC | 59.870 | 47.619 | 11.82 | 11.82 | 41.94 | 4.06 |
2465 | 4288 | 2.418692 | CTTTTTCATTGGCTGCATGCA | 58.581 | 42.857 | 21.29 | 21.29 | 45.15 | 3.96 |
2466 | 4289 | 2.772077 | TTTTCATTGGCTGCATGCAT | 57.228 | 40.000 | 22.97 | 2.13 | 45.15 | 3.96 |
2467 | 4290 | 2.017138 | TTTCATTGGCTGCATGCATG | 57.983 | 45.000 | 22.97 | 22.70 | 45.15 | 4.06 |
2468 | 4291 | 0.899019 | TTCATTGGCTGCATGCATGT | 59.101 | 45.000 | 26.79 | 3.11 | 45.15 | 3.21 |
2469 | 4292 | 0.174617 | TCATTGGCTGCATGCATGTG | 59.825 | 50.000 | 26.79 | 20.03 | 45.15 | 3.21 |
2470 | 4293 | 0.174617 | CATTGGCTGCATGCATGTGA | 59.825 | 50.000 | 26.79 | 13.57 | 45.15 | 3.58 |
2471 | 4294 | 0.459899 | ATTGGCTGCATGCATGTGAG | 59.540 | 50.000 | 26.79 | 22.09 | 45.15 | 3.51 |
2472 | 4295 | 0.609681 | TTGGCTGCATGCATGTGAGA | 60.610 | 50.000 | 26.79 | 8.79 | 45.15 | 3.27 |
2473 | 4296 | 1.029947 | TGGCTGCATGCATGTGAGAG | 61.030 | 55.000 | 26.79 | 17.66 | 45.15 | 3.20 |
2474 | 4297 | 0.746923 | GGCTGCATGCATGTGAGAGA | 60.747 | 55.000 | 26.79 | 4.82 | 45.15 | 3.10 |
2475 | 4298 | 0.658368 | GCTGCATGCATGTGAGAGAG | 59.342 | 55.000 | 26.79 | 7.15 | 42.31 | 3.20 |
2476 | 4299 | 2.012554 | GCTGCATGCATGTGAGAGAGT | 61.013 | 52.381 | 26.79 | 0.00 | 42.31 | 3.24 |
2477 | 4300 | 1.666189 | CTGCATGCATGTGAGAGAGTG | 59.334 | 52.381 | 26.79 | 0.21 | 0.00 | 3.51 |
2478 | 4301 | 0.377554 | GCATGCATGTGAGAGAGTGC | 59.622 | 55.000 | 26.79 | 7.20 | 38.05 | 4.40 |
2481 | 4304 | 2.484742 | TGCATGTGAGAGAGTGCATT | 57.515 | 45.000 | 0.00 | 0.00 | 42.13 | 3.56 |
2482 | 4305 | 2.081462 | TGCATGTGAGAGAGTGCATTG | 58.919 | 47.619 | 0.00 | 0.00 | 42.13 | 2.82 |
2483 | 4306 | 1.400846 | GCATGTGAGAGAGTGCATTGG | 59.599 | 52.381 | 0.00 | 0.00 | 37.52 | 3.16 |
2484 | 4307 | 2.014857 | CATGTGAGAGAGTGCATTGGG | 58.985 | 52.381 | 0.00 | 0.00 | 0.00 | 4.12 |
2485 | 4308 | 1.351076 | TGTGAGAGAGTGCATTGGGA | 58.649 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2486 | 4309 | 1.277273 | TGTGAGAGAGTGCATTGGGAG | 59.723 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2487 | 4310 | 1.277557 | GTGAGAGAGTGCATTGGGAGT | 59.722 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2488 | 4311 | 1.277273 | TGAGAGAGTGCATTGGGAGTG | 59.723 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
2489 | 4312 | 0.617413 | AGAGAGTGCATTGGGAGTGG | 59.383 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2490 | 4313 | 0.615331 | GAGAGTGCATTGGGAGTGGA | 59.385 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2491 | 4314 | 1.003580 | GAGAGTGCATTGGGAGTGGAA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
2492 | 4315 | 1.637553 | AGAGTGCATTGGGAGTGGAAT | 59.362 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
2493 | 4316 | 1.747355 | GAGTGCATTGGGAGTGGAATG | 59.253 | 52.381 | 0.00 | 0.00 | 33.46 | 2.67 |
2494 | 4317 | 0.819582 | GTGCATTGGGAGTGGAATGG | 59.180 | 55.000 | 0.00 | 0.00 | 31.38 | 3.16 |
2495 | 4318 | 0.703488 | TGCATTGGGAGTGGAATGGA | 59.297 | 50.000 | 0.00 | 0.00 | 31.38 | 3.41 |
2496 | 4319 | 1.076841 | TGCATTGGGAGTGGAATGGAA | 59.923 | 47.619 | 0.00 | 0.00 | 31.38 | 3.53 |
2497 | 4320 | 2.292389 | TGCATTGGGAGTGGAATGGAAT | 60.292 | 45.455 | 0.00 | 0.00 | 31.38 | 3.01 |
2498 | 4321 | 3.053019 | TGCATTGGGAGTGGAATGGAATA | 60.053 | 43.478 | 0.00 | 0.00 | 31.38 | 1.75 |
2499 | 4322 | 3.960102 | GCATTGGGAGTGGAATGGAATAA | 59.040 | 43.478 | 0.00 | 0.00 | 31.38 | 1.40 |
2500 | 4323 | 4.590222 | GCATTGGGAGTGGAATGGAATAAT | 59.410 | 41.667 | 0.00 | 0.00 | 31.38 | 1.28 |
2501 | 4324 | 5.070847 | GCATTGGGAGTGGAATGGAATAATT | 59.929 | 40.000 | 0.00 | 0.00 | 31.38 | 1.40 |
2502 | 4325 | 6.267471 | GCATTGGGAGTGGAATGGAATAATTA | 59.733 | 38.462 | 0.00 | 0.00 | 31.38 | 1.40 |
2503 | 4326 | 7.201992 | GCATTGGGAGTGGAATGGAATAATTAA | 60.202 | 37.037 | 0.00 | 0.00 | 31.38 | 1.40 |
2504 | 4327 | 8.873144 | CATTGGGAGTGGAATGGAATAATTAAT | 58.127 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2505 | 4328 | 7.838079 | TGGGAGTGGAATGGAATAATTAATG | 57.162 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2506 | 4329 | 7.361438 | TGGGAGTGGAATGGAATAATTAATGT | 58.639 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
2507 | 4330 | 7.287466 | TGGGAGTGGAATGGAATAATTAATGTG | 59.713 | 37.037 | 0.00 | 0.00 | 0.00 | 3.21 |
2508 | 4331 | 7.505585 | GGGAGTGGAATGGAATAATTAATGTGA | 59.494 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
2509 | 4332 | 8.571336 | GGAGTGGAATGGAATAATTAATGTGAG | 58.429 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2510 | 4333 | 7.945134 | AGTGGAATGGAATAATTAATGTGAGC | 58.055 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
2511 | 4334 | 7.560991 | AGTGGAATGGAATAATTAATGTGAGCA | 59.439 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
2512 | 4335 | 8.196771 | GTGGAATGGAATAATTAATGTGAGCAA | 58.803 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
2513 | 4336 | 8.415553 | TGGAATGGAATAATTAATGTGAGCAAG | 58.584 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
2514 | 4337 | 8.416329 | GGAATGGAATAATTAATGTGAGCAAGT | 58.584 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2515 | 4338 | 9.807649 | GAATGGAATAATTAATGTGAGCAAGTT | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2518 | 4341 | 9.461312 | TGGAATAATTAATGTGAGCAAGTTACT | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2524 | 4347 | 8.792830 | ATTAATGTGAGCAAGTTACTATGTGT | 57.207 | 30.769 | 0.00 | 0.00 | 0.00 | 3.72 |
2525 | 4348 | 6.727824 | AATGTGAGCAAGTTACTATGTGTC | 57.272 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
2526 | 4349 | 5.468540 | TGTGAGCAAGTTACTATGTGTCT | 57.531 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
2527 | 4350 | 5.853936 | TGTGAGCAAGTTACTATGTGTCTT | 58.146 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
2528 | 4351 | 5.696270 | TGTGAGCAAGTTACTATGTGTCTTG | 59.304 | 40.000 | 0.00 | 0.00 | 38.60 | 3.02 |
2529 | 4352 | 5.120830 | GTGAGCAAGTTACTATGTGTCTTGG | 59.879 | 44.000 | 0.00 | 0.00 | 36.85 | 3.61 |
2530 | 4353 | 5.221641 | TGAGCAAGTTACTATGTGTCTTGGT | 60.222 | 40.000 | 15.13 | 15.13 | 45.21 | 3.67 |
2531 | 4354 | 5.238583 | AGCAAGTTACTATGTGTCTTGGTC | 58.761 | 41.667 | 0.00 | 0.00 | 40.98 | 4.02 |
2532 | 4355 | 5.012148 | AGCAAGTTACTATGTGTCTTGGTCT | 59.988 | 40.000 | 0.00 | 0.00 | 40.98 | 3.85 |
2533 | 4356 | 6.210784 | AGCAAGTTACTATGTGTCTTGGTCTA | 59.789 | 38.462 | 0.00 | 0.00 | 40.98 | 2.59 |
2534 | 4357 | 6.872020 | GCAAGTTACTATGTGTCTTGGTCTAA | 59.128 | 38.462 | 0.00 | 0.00 | 36.85 | 2.10 |
2535 | 4358 | 7.063544 | GCAAGTTACTATGTGTCTTGGTCTAAG | 59.936 | 40.741 | 0.00 | 0.00 | 36.85 | 2.18 |
2536 | 4359 | 8.304596 | CAAGTTACTATGTGTCTTGGTCTAAGA | 58.695 | 37.037 | 0.00 | 0.00 | 43.01 | 2.10 |
2537 | 4360 | 8.057536 | AGTTACTATGTGTCTTGGTCTAAGAG | 57.942 | 38.462 | 0.00 | 0.00 | 45.71 | 2.85 |
2538 | 4361 | 7.889073 | AGTTACTATGTGTCTTGGTCTAAGAGA | 59.111 | 37.037 | 0.00 | 0.00 | 45.71 | 3.10 |
2539 | 4362 | 8.521176 | GTTACTATGTGTCTTGGTCTAAGAGAA | 58.479 | 37.037 | 0.00 | 0.00 | 45.71 | 2.87 |
2540 | 4363 | 7.164230 | ACTATGTGTCTTGGTCTAAGAGAAG | 57.836 | 40.000 | 0.00 | 0.00 | 45.71 | 2.85 |
2541 | 4364 | 6.722129 | ACTATGTGTCTTGGTCTAAGAGAAGT | 59.278 | 38.462 | 0.00 | 0.00 | 45.71 | 3.01 |
2542 | 4365 | 5.871396 | TGTGTCTTGGTCTAAGAGAAGTT | 57.129 | 39.130 | 0.00 | 0.00 | 45.71 | 2.66 |
2543 | 4366 | 5.601662 | TGTGTCTTGGTCTAAGAGAAGTTG | 58.398 | 41.667 | 0.00 | 0.00 | 45.71 | 3.16 |
2544 | 4367 | 5.128827 | TGTGTCTTGGTCTAAGAGAAGTTGT | 59.871 | 40.000 | 0.00 | 0.00 | 45.71 | 3.32 |
2545 | 4368 | 5.692654 | GTGTCTTGGTCTAAGAGAAGTTGTC | 59.307 | 44.000 | 0.00 | 0.00 | 45.71 | 3.18 |
2546 | 4369 | 5.598830 | TGTCTTGGTCTAAGAGAAGTTGTCT | 59.401 | 40.000 | 0.00 | 0.00 | 45.71 | 3.41 |
2547 | 4370 | 6.098409 | TGTCTTGGTCTAAGAGAAGTTGTCTT | 59.902 | 38.462 | 18.27 | 18.27 | 45.71 | 3.01 |
2548 | 4371 | 6.643360 | GTCTTGGTCTAAGAGAAGTTGTCTTC | 59.357 | 42.308 | 17.81 | 5.55 | 45.71 | 2.87 |
2549 | 4372 | 6.323996 | TCTTGGTCTAAGAGAAGTTGTCTTCA | 59.676 | 38.462 | 17.81 | 7.95 | 42.94 | 3.02 |
2550 | 4373 | 7.470702 | TCTTGGTCTAAGAGAAGTTGTCTTCAG | 60.471 | 40.741 | 17.81 | 13.32 | 42.94 | 3.02 |
2561 | 4384 | 6.819397 | AAGTTGTCTTCAGGCCTAATAAAC | 57.181 | 37.500 | 3.98 | 6.02 | 0.00 | 2.01 |
2562 | 4385 | 5.254115 | AGTTGTCTTCAGGCCTAATAAACC | 58.746 | 41.667 | 3.98 | 0.00 | 0.00 | 3.27 |
2563 | 4386 | 4.230745 | TGTCTTCAGGCCTAATAAACCC | 57.769 | 45.455 | 3.98 | 0.00 | 0.00 | 4.11 |
2564 | 4387 | 3.203716 | GTCTTCAGGCCTAATAAACCCG | 58.796 | 50.000 | 3.98 | 0.00 | 0.00 | 5.28 |
2565 | 4388 | 2.171870 | TCTTCAGGCCTAATAAACCCGG | 59.828 | 50.000 | 3.98 | 0.00 | 0.00 | 5.73 |
2566 | 4389 | 1.882308 | TCAGGCCTAATAAACCCGGA | 58.118 | 50.000 | 3.98 | 0.00 | 0.00 | 5.14 |
2567 | 4390 | 1.487558 | TCAGGCCTAATAAACCCGGAC | 59.512 | 52.381 | 3.98 | 0.00 | 0.00 | 4.79 |
2568 | 4391 | 0.466963 | AGGCCTAATAAACCCGGACG | 59.533 | 55.000 | 1.29 | 0.00 | 0.00 | 4.79 |
2569 | 4392 | 0.533531 | GGCCTAATAAACCCGGACGG | 60.534 | 60.000 | 0.73 | 3.25 | 37.81 | 4.79 |
2570 | 4393 | 0.465287 | GCCTAATAAACCCGGACGGA | 59.535 | 55.000 | 13.13 | 0.00 | 37.50 | 4.69 |
2571 | 4394 | 1.539712 | GCCTAATAAACCCGGACGGAG | 60.540 | 57.143 | 13.13 | 5.04 | 37.50 | 4.63 |
2572 | 4395 | 1.069668 | CCTAATAAACCCGGACGGAGG | 59.930 | 57.143 | 13.13 | 5.18 | 37.50 | 4.30 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
254 | 1994 | 9.956640 | ATCCAATTTGTTGCCAAAATTCTAATA | 57.043 | 25.926 | 0.00 | 0.00 | 43.43 | 0.98 |
311 | 2051 | 7.331791 | ACTATGTAGTTCCATCTCAAGGTTTC | 58.668 | 38.462 | 0.00 | 0.00 | 31.13 | 2.78 |
394 | 2134 | 9.699410 | TTGAGTTATGATCCAAATGTCCTAATT | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
422 | 2162 | 7.148689 | GCACAAGCTTATCAAGGAAAATTTCAG | 60.149 | 37.037 | 8.09 | 0.00 | 37.91 | 3.02 |
1148 | 2936 | 3.387374 | AGACAGAGCAGAATACCTCCATG | 59.613 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
1666 | 3480 | 3.221771 | CTCTGGATACTCCTGGACTGAG | 58.778 | 54.545 | 0.00 | 0.00 | 37.46 | 3.35 |
1997 | 3811 | 2.963320 | GTTGTGGCCGACGTCGTT | 60.963 | 61.111 | 33.49 | 0.00 | 37.74 | 3.85 |
1998 | 3812 | 3.719883 | TTGTTGTGGCCGACGTCGT | 62.720 | 57.895 | 33.49 | 0.00 | 37.74 | 4.34 |
2010 | 3830 | 7.041107 | ACTTGTGTGCAGAATAAATTTGTTGT | 58.959 | 30.769 | 4.76 | 0.00 | 0.00 | 3.32 |
2093 | 3916 | 2.101249 | CTGCAAAGAGGCTGGTTCAAAA | 59.899 | 45.455 | 0.00 | 0.00 | 34.04 | 2.44 |
2265 | 4088 | 3.306780 | GGGAGTAGCTGCTAAGAAACACA | 60.307 | 47.826 | 11.57 | 0.00 | 0.00 | 3.72 |
2286 | 4109 | 2.484947 | GCCTAATAAACCCAGACGGAGG | 60.485 | 54.545 | 0.00 | 0.00 | 34.64 | 4.30 |
2287 | 4110 | 2.484947 | GGCCTAATAAACCCAGACGGAG | 60.485 | 54.545 | 0.00 | 0.00 | 34.64 | 4.63 |
2288 | 4111 | 1.487558 | GGCCTAATAAACCCAGACGGA | 59.512 | 52.381 | 0.00 | 0.00 | 34.64 | 4.69 |
2289 | 4112 | 1.489230 | AGGCCTAATAAACCCAGACGG | 59.511 | 52.381 | 1.29 | 0.00 | 37.81 | 4.79 |
2290 | 4113 | 2.434702 | AGAGGCCTAATAAACCCAGACG | 59.565 | 50.000 | 4.42 | 0.00 | 0.00 | 4.18 |
2291 | 4114 | 3.454812 | TGAGAGGCCTAATAAACCCAGAC | 59.545 | 47.826 | 4.42 | 0.00 | 0.00 | 3.51 |
2292 | 4115 | 3.711704 | CTGAGAGGCCTAATAAACCCAGA | 59.288 | 47.826 | 4.42 | 0.00 | 0.00 | 3.86 |
2293 | 4116 | 3.745797 | GCTGAGAGGCCTAATAAACCCAG | 60.746 | 52.174 | 4.42 | 0.00 | 0.00 | 4.45 |
2294 | 4117 | 2.172717 | GCTGAGAGGCCTAATAAACCCA | 59.827 | 50.000 | 4.42 | 0.00 | 0.00 | 4.51 |
2295 | 4118 | 2.172717 | TGCTGAGAGGCCTAATAAACCC | 59.827 | 50.000 | 4.42 | 0.00 | 0.00 | 4.11 |
2296 | 4119 | 3.560636 | TGCTGAGAGGCCTAATAAACC | 57.439 | 47.619 | 4.42 | 0.00 | 0.00 | 3.27 |
2297 | 4120 | 4.513318 | GTGATGCTGAGAGGCCTAATAAAC | 59.487 | 45.833 | 4.42 | 0.00 | 0.00 | 2.01 |
2298 | 4121 | 4.164030 | TGTGATGCTGAGAGGCCTAATAAA | 59.836 | 41.667 | 4.42 | 0.00 | 0.00 | 1.40 |
2299 | 4122 | 3.711190 | TGTGATGCTGAGAGGCCTAATAA | 59.289 | 43.478 | 4.42 | 0.00 | 0.00 | 1.40 |
2300 | 4123 | 3.308401 | TGTGATGCTGAGAGGCCTAATA | 58.692 | 45.455 | 4.42 | 0.00 | 0.00 | 0.98 |
2301 | 4124 | 2.121948 | TGTGATGCTGAGAGGCCTAAT | 58.878 | 47.619 | 4.42 | 0.00 | 0.00 | 1.73 |
2302 | 4125 | 1.571955 | TGTGATGCTGAGAGGCCTAA | 58.428 | 50.000 | 4.42 | 0.00 | 0.00 | 2.69 |
2303 | 4126 | 1.483827 | CTTGTGATGCTGAGAGGCCTA | 59.516 | 52.381 | 4.42 | 0.00 | 0.00 | 3.93 |
2304 | 4127 | 0.252479 | CTTGTGATGCTGAGAGGCCT | 59.748 | 55.000 | 3.86 | 3.86 | 0.00 | 5.19 |
2305 | 4128 | 1.375098 | GCTTGTGATGCTGAGAGGCC | 61.375 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
2306 | 4129 | 0.675837 | TGCTTGTGATGCTGAGAGGC | 60.676 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2307 | 4130 | 1.671328 | CATGCTTGTGATGCTGAGAGG | 59.329 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
2308 | 4131 | 2.352034 | GACATGCTTGTGATGCTGAGAG | 59.648 | 50.000 | 10.37 | 0.00 | 35.79 | 3.20 |
2309 | 4132 | 2.353323 | GACATGCTTGTGATGCTGAGA | 58.647 | 47.619 | 10.37 | 0.00 | 35.79 | 3.27 |
2310 | 4133 | 1.400846 | GGACATGCTTGTGATGCTGAG | 59.599 | 52.381 | 10.37 | 0.00 | 35.79 | 3.35 |
2311 | 4134 | 1.456296 | GGACATGCTTGTGATGCTGA | 58.544 | 50.000 | 10.37 | 0.00 | 35.79 | 4.26 |
2312 | 4135 | 0.454600 | GGGACATGCTTGTGATGCTG | 59.545 | 55.000 | 10.37 | 0.00 | 35.79 | 4.41 |
2313 | 4136 | 0.682209 | GGGGACATGCTTGTGATGCT | 60.682 | 55.000 | 10.37 | 0.00 | 35.79 | 3.79 |
2314 | 4137 | 1.669999 | GGGGGACATGCTTGTGATGC | 61.670 | 60.000 | 10.37 | 0.00 | 35.79 | 3.91 |
2315 | 4138 | 0.033796 | AGGGGGACATGCTTGTGATG | 60.034 | 55.000 | 10.37 | 0.00 | 35.79 | 3.07 |
2316 | 4139 | 0.706433 | AAGGGGGACATGCTTGTGAT | 59.294 | 50.000 | 10.37 | 0.00 | 35.79 | 3.06 |
2317 | 4140 | 0.482446 | AAAGGGGGACATGCTTGTGA | 59.518 | 50.000 | 10.37 | 0.00 | 35.79 | 3.58 |
2318 | 4141 | 1.341080 | AAAAGGGGGACATGCTTGTG | 58.659 | 50.000 | 10.37 | 0.00 | 35.79 | 3.33 |
2319 | 4142 | 2.990740 | TAAAAGGGGGACATGCTTGT | 57.009 | 45.000 | 4.68 | 4.68 | 39.32 | 3.16 |
2320 | 4143 | 5.520376 | CTTATAAAAGGGGGACATGCTTG | 57.480 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
2333 | 4156 | 2.100749 | CCAAAGCGGGGCCTTATAAAAG | 59.899 | 50.000 | 0.84 | 0.00 | 0.00 | 2.27 |
2334 | 4157 | 2.104170 | CCAAAGCGGGGCCTTATAAAA | 58.896 | 47.619 | 0.84 | 0.00 | 0.00 | 1.52 |
2335 | 4158 | 1.285373 | TCCAAAGCGGGGCCTTATAAA | 59.715 | 47.619 | 0.84 | 0.00 | 34.36 | 1.40 |
2336 | 4159 | 0.920438 | TCCAAAGCGGGGCCTTATAA | 59.080 | 50.000 | 0.84 | 0.00 | 34.36 | 0.98 |
2337 | 4160 | 0.920438 | TTCCAAAGCGGGGCCTTATA | 59.080 | 50.000 | 0.84 | 0.00 | 34.36 | 0.98 |
2338 | 4161 | 0.040499 | TTTCCAAAGCGGGGCCTTAT | 59.960 | 50.000 | 0.84 | 0.00 | 34.36 | 1.73 |
2339 | 4162 | 0.610785 | CTTTCCAAAGCGGGGCCTTA | 60.611 | 55.000 | 0.84 | 0.00 | 34.36 | 2.69 |
2340 | 4163 | 1.908299 | CTTTCCAAAGCGGGGCCTT | 60.908 | 57.895 | 0.84 | 0.00 | 34.36 | 4.35 |
2341 | 4164 | 2.283173 | CTTTCCAAAGCGGGGCCT | 60.283 | 61.111 | 0.84 | 0.00 | 34.36 | 5.19 |
2342 | 4165 | 3.381983 | CCTTTCCAAAGCGGGGCC | 61.382 | 66.667 | 0.00 | 0.00 | 34.69 | 5.80 |
2343 | 4166 | 2.600470 | ACCTTTCCAAAGCGGGGC | 60.600 | 61.111 | 0.00 | 0.00 | 34.69 | 5.80 |
2344 | 4167 | 2.931068 | GCACCTTTCCAAAGCGGGG | 61.931 | 63.158 | 0.00 | 0.00 | 34.69 | 5.73 |
2345 | 4168 | 1.535204 | ATGCACCTTTCCAAAGCGGG | 61.535 | 55.000 | 0.00 | 0.00 | 34.69 | 6.13 |
2346 | 4169 | 0.388907 | CATGCACCTTTCCAAAGCGG | 60.389 | 55.000 | 0.00 | 0.00 | 34.69 | 5.52 |
2347 | 4170 | 1.010419 | GCATGCACCTTTCCAAAGCG | 61.010 | 55.000 | 14.21 | 0.00 | 34.69 | 4.68 |
2348 | 4171 | 0.033781 | TGCATGCACCTTTCCAAAGC | 59.966 | 50.000 | 18.46 | 0.00 | 34.69 | 3.51 |
2349 | 4172 | 2.343101 | CATGCATGCACCTTTCCAAAG | 58.657 | 47.619 | 25.37 | 0.00 | 35.79 | 2.77 |
2350 | 4173 | 2.459060 | CATGCATGCACCTTTCCAAA | 57.541 | 45.000 | 25.37 | 0.00 | 0.00 | 3.28 |
2361 | 4184 | 6.495892 | CCAATGAAATGGTTGCATGCATGC | 62.496 | 45.833 | 38.71 | 38.71 | 43.53 | 4.06 |
2362 | 4185 | 3.064682 | CCAATGAAATGGTTGCATGCATG | 59.935 | 43.478 | 23.37 | 22.70 | 35.65 | 4.06 |
2363 | 4186 | 3.275143 | CCAATGAAATGGTTGCATGCAT | 58.725 | 40.909 | 23.37 | 4.78 | 35.65 | 3.96 |
2364 | 4187 | 2.701107 | CCAATGAAATGGTTGCATGCA | 58.299 | 42.857 | 18.46 | 18.46 | 35.65 | 3.96 |
2373 | 4196 | 5.943706 | TTTCAATGCAACCAATGAAATGG | 57.056 | 34.783 | 0.00 | 0.00 | 42.75 | 3.16 |
2374 | 4197 | 6.144175 | GGTTTTCAATGCAACCAATGAAATG | 58.856 | 36.000 | 12.55 | 0.00 | 45.33 | 2.32 |
2375 | 4198 | 6.316440 | GGTTTTCAATGCAACCAATGAAAT | 57.684 | 33.333 | 12.55 | 0.00 | 45.33 | 2.17 |
2376 | 4199 | 5.747951 | GGTTTTCAATGCAACCAATGAAA | 57.252 | 34.783 | 8.69 | 0.66 | 44.73 | 2.69 |
2383 | 4206 | 4.335037 | ACAACAATGGTTTTCAATGCAACC | 59.665 | 37.500 | 7.09 | 7.09 | 42.61 | 3.77 |
2384 | 4207 | 5.482686 | ACAACAATGGTTTTCAATGCAAC | 57.517 | 34.783 | 0.00 | 0.00 | 34.21 | 4.17 |
2385 | 4208 | 5.163683 | CCAACAACAATGGTTTTCAATGCAA | 60.164 | 36.000 | 0.00 | 0.00 | 34.21 | 4.08 |
2386 | 4209 | 4.334759 | CCAACAACAATGGTTTTCAATGCA | 59.665 | 37.500 | 0.00 | 0.00 | 34.21 | 3.96 |
2387 | 4210 | 4.846509 | CCAACAACAATGGTTTTCAATGC | 58.153 | 39.130 | 0.00 | 0.00 | 34.21 | 3.56 |
2397 | 4220 | 1.608542 | CCATGGCACCAACAACAATGG | 60.609 | 52.381 | 0.00 | 0.00 | 43.84 | 3.16 |
2398 | 4221 | 1.798283 | CCATGGCACCAACAACAATG | 58.202 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2399 | 4222 | 0.035176 | GCCATGGCACCAACAACAAT | 59.965 | 50.000 | 32.08 | 0.00 | 41.49 | 2.71 |
2400 | 4223 | 1.047596 | AGCCATGGCACCAACAACAA | 61.048 | 50.000 | 37.18 | 0.00 | 44.88 | 2.83 |
2401 | 4224 | 1.457267 | AGCCATGGCACCAACAACA | 60.457 | 52.632 | 37.18 | 0.00 | 44.88 | 3.33 |
2402 | 4225 | 1.005867 | CAGCCATGGCACCAACAAC | 60.006 | 57.895 | 37.18 | 5.77 | 44.88 | 3.32 |
2403 | 4226 | 0.758310 | TTCAGCCATGGCACCAACAA | 60.758 | 50.000 | 37.18 | 16.98 | 44.88 | 2.83 |
2404 | 4227 | 0.758310 | TTTCAGCCATGGCACCAACA | 60.758 | 50.000 | 37.18 | 13.92 | 44.88 | 3.33 |
2405 | 4228 | 0.392336 | TTTTCAGCCATGGCACCAAC | 59.608 | 50.000 | 37.18 | 8.17 | 44.88 | 3.77 |
2406 | 4229 | 1.126488 | TTTTTCAGCCATGGCACCAA | 58.874 | 45.000 | 37.18 | 22.87 | 44.88 | 3.67 |
2407 | 4230 | 1.350071 | ATTTTTCAGCCATGGCACCA | 58.650 | 45.000 | 37.18 | 18.30 | 44.88 | 4.17 |
2408 | 4231 | 2.477845 | AATTTTTCAGCCATGGCACC | 57.522 | 45.000 | 37.18 | 9.79 | 44.88 | 5.01 |
2409 | 4232 | 6.035975 | GTGTATTAATTTTTCAGCCATGGCAC | 59.964 | 38.462 | 37.18 | 21.47 | 44.88 | 5.01 |
2410 | 4233 | 6.070881 | AGTGTATTAATTTTTCAGCCATGGCA | 60.071 | 34.615 | 37.18 | 16.60 | 44.88 | 4.92 |
2411 | 4234 | 6.340522 | AGTGTATTAATTTTTCAGCCATGGC | 58.659 | 36.000 | 30.12 | 30.12 | 42.33 | 4.40 |
2412 | 4235 | 8.034215 | TGAAGTGTATTAATTTTTCAGCCATGG | 58.966 | 33.333 | 7.63 | 7.63 | 0.00 | 3.66 |
2413 | 4236 | 8.984891 | TGAAGTGTATTAATTTTTCAGCCATG | 57.015 | 30.769 | 0.00 | 0.00 | 0.00 | 3.66 |
2414 | 4237 | 9.590451 | CATGAAGTGTATTAATTTTTCAGCCAT | 57.410 | 29.630 | 0.00 | 0.00 | 0.00 | 4.40 |
2415 | 4238 | 7.545265 | GCATGAAGTGTATTAATTTTTCAGCCA | 59.455 | 33.333 | 0.00 | 0.00 | 0.00 | 4.75 |
2416 | 4239 | 7.253750 | CGCATGAAGTGTATTAATTTTTCAGCC | 60.254 | 37.037 | 0.00 | 0.00 | 0.00 | 4.85 |
2417 | 4240 | 7.273381 | ACGCATGAAGTGTATTAATTTTTCAGC | 59.727 | 33.333 | 0.00 | 4.94 | 39.69 | 4.26 |
2418 | 4241 | 8.577939 | CACGCATGAAGTGTATTAATTTTTCAG | 58.422 | 33.333 | 12.00 | 0.00 | 39.40 | 3.02 |
2419 | 4242 | 7.061673 | GCACGCATGAAGTGTATTAATTTTTCA | 59.938 | 33.333 | 18.63 | 0.28 | 39.40 | 2.69 |
2420 | 4243 | 7.273381 | AGCACGCATGAAGTGTATTAATTTTTC | 59.727 | 33.333 | 18.63 | 0.00 | 39.40 | 2.29 |
2421 | 4244 | 7.090173 | AGCACGCATGAAGTGTATTAATTTTT | 58.910 | 30.769 | 18.63 | 0.00 | 39.40 | 1.94 |
2422 | 4245 | 6.620678 | AGCACGCATGAAGTGTATTAATTTT | 58.379 | 32.000 | 18.63 | 0.00 | 39.40 | 1.82 |
2423 | 4246 | 6.194796 | AGCACGCATGAAGTGTATTAATTT | 57.805 | 33.333 | 18.63 | 0.00 | 39.40 | 1.82 |
2424 | 4247 | 5.818136 | AGCACGCATGAAGTGTATTAATT | 57.182 | 34.783 | 18.63 | 0.00 | 39.40 | 1.40 |
2425 | 4248 | 5.818136 | AAGCACGCATGAAGTGTATTAAT | 57.182 | 34.783 | 18.63 | 0.00 | 39.40 | 1.40 |
2426 | 4249 | 5.621197 | AAAGCACGCATGAAGTGTATTAA | 57.379 | 34.783 | 18.63 | 0.00 | 39.40 | 1.40 |
2427 | 4250 | 5.621197 | AAAAGCACGCATGAAGTGTATTA | 57.379 | 34.783 | 18.63 | 0.00 | 39.40 | 0.98 |
2428 | 4251 | 4.503741 | AAAAGCACGCATGAAGTGTATT | 57.496 | 36.364 | 18.63 | 12.87 | 39.40 | 1.89 |
2429 | 4252 | 4.023279 | TGAAAAAGCACGCATGAAGTGTAT | 60.023 | 37.500 | 18.63 | 8.80 | 39.40 | 2.29 |
2430 | 4253 | 3.313803 | TGAAAAAGCACGCATGAAGTGTA | 59.686 | 39.130 | 18.63 | 1.00 | 39.40 | 2.90 |
2431 | 4254 | 2.098934 | TGAAAAAGCACGCATGAAGTGT | 59.901 | 40.909 | 18.63 | 7.11 | 42.97 | 3.55 |
2432 | 4255 | 2.730069 | TGAAAAAGCACGCATGAAGTG | 58.270 | 42.857 | 14.88 | 14.88 | 42.15 | 3.16 |
2433 | 4256 | 3.648339 | ATGAAAAAGCACGCATGAAGT | 57.352 | 38.095 | 0.00 | 0.00 | 0.00 | 3.01 |
2434 | 4257 | 3.122278 | CCAATGAAAAAGCACGCATGAAG | 59.878 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2435 | 4258 | 3.058450 | CCAATGAAAAAGCACGCATGAA | 58.942 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
2436 | 4259 | 2.674954 | CCAATGAAAAAGCACGCATGA | 58.325 | 42.857 | 0.00 | 0.00 | 0.00 | 3.07 |
2437 | 4260 | 1.127213 | GCCAATGAAAAAGCACGCATG | 59.873 | 47.619 | 0.00 | 0.00 | 0.00 | 4.06 |
2438 | 4261 | 1.001181 | AGCCAATGAAAAAGCACGCAT | 59.999 | 42.857 | 0.00 | 0.00 | 0.00 | 4.73 |
2439 | 4262 | 0.388659 | AGCCAATGAAAAAGCACGCA | 59.611 | 45.000 | 0.00 | 0.00 | 0.00 | 5.24 |
2440 | 4263 | 0.785979 | CAGCCAATGAAAAAGCACGC | 59.214 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2441 | 4264 | 0.785979 | GCAGCCAATGAAAAAGCACG | 59.214 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2442 | 4265 | 1.868469 | TGCAGCCAATGAAAAAGCAC | 58.132 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2443 | 4266 | 2.418692 | CATGCAGCCAATGAAAAAGCA | 58.581 | 42.857 | 0.00 | 0.00 | 34.78 | 3.91 |
2444 | 4267 | 1.129811 | GCATGCAGCCAATGAAAAAGC | 59.870 | 47.619 | 14.21 | 0.00 | 37.23 | 3.51 |
2445 | 4268 | 2.418692 | TGCATGCAGCCAATGAAAAAG | 58.581 | 42.857 | 18.46 | 0.00 | 44.83 | 2.27 |
2446 | 4269 | 2.545537 | TGCATGCAGCCAATGAAAAA | 57.454 | 40.000 | 18.46 | 0.00 | 44.83 | 1.94 |
2447 | 4270 | 2.289756 | ACATGCATGCAGCCAATGAAAA | 60.290 | 40.909 | 26.69 | 0.00 | 44.83 | 2.29 |
2448 | 4271 | 1.276705 | ACATGCATGCAGCCAATGAAA | 59.723 | 42.857 | 26.69 | 0.00 | 44.83 | 2.69 |
2449 | 4272 | 0.899019 | ACATGCATGCAGCCAATGAA | 59.101 | 45.000 | 26.69 | 0.00 | 44.83 | 2.57 |
2450 | 4273 | 0.174617 | CACATGCATGCAGCCAATGA | 59.825 | 50.000 | 26.69 | 0.00 | 44.83 | 2.57 |
2451 | 4274 | 0.174617 | TCACATGCATGCAGCCAATG | 59.825 | 50.000 | 26.69 | 20.32 | 44.83 | 2.82 |
2452 | 4275 | 0.459899 | CTCACATGCATGCAGCCAAT | 59.540 | 50.000 | 26.69 | 5.62 | 44.83 | 3.16 |
2453 | 4276 | 0.609681 | TCTCACATGCATGCAGCCAA | 60.610 | 50.000 | 26.69 | 10.65 | 44.83 | 4.52 |
2454 | 4277 | 1.001887 | TCTCACATGCATGCAGCCA | 60.002 | 52.632 | 26.69 | 8.75 | 44.83 | 4.75 |
2455 | 4278 | 0.746923 | TCTCTCACATGCATGCAGCC | 60.747 | 55.000 | 26.69 | 0.00 | 44.83 | 4.85 |
2456 | 4279 | 0.658368 | CTCTCTCACATGCATGCAGC | 59.342 | 55.000 | 26.69 | 0.00 | 45.96 | 5.25 |
2457 | 4280 | 1.666189 | CACTCTCTCACATGCATGCAG | 59.334 | 52.381 | 26.69 | 21.02 | 0.00 | 4.41 |
2458 | 4281 | 1.734163 | CACTCTCTCACATGCATGCA | 58.266 | 50.000 | 26.53 | 25.04 | 0.00 | 3.96 |
2459 | 4282 | 0.377554 | GCACTCTCTCACATGCATGC | 59.622 | 55.000 | 26.53 | 11.82 | 38.00 | 4.06 |
2460 | 4283 | 1.734163 | TGCACTCTCTCACATGCATG | 58.266 | 50.000 | 25.09 | 25.09 | 42.92 | 4.06 |
2463 | 4286 | 1.400846 | CCAATGCACTCTCTCACATGC | 59.599 | 52.381 | 0.00 | 0.00 | 38.59 | 4.06 |
2464 | 4287 | 2.014857 | CCCAATGCACTCTCTCACATG | 58.985 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
2465 | 4288 | 1.911357 | TCCCAATGCACTCTCTCACAT | 59.089 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
2466 | 4289 | 1.277273 | CTCCCAATGCACTCTCTCACA | 59.723 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
2467 | 4290 | 1.277557 | ACTCCCAATGCACTCTCTCAC | 59.722 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
2468 | 4291 | 1.277273 | CACTCCCAATGCACTCTCTCA | 59.723 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
2469 | 4292 | 1.406614 | CCACTCCCAATGCACTCTCTC | 60.407 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
2470 | 4293 | 0.617413 | CCACTCCCAATGCACTCTCT | 59.383 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2471 | 4294 | 0.615331 | TCCACTCCCAATGCACTCTC | 59.385 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2472 | 4295 | 1.067295 | TTCCACTCCCAATGCACTCT | 58.933 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2473 | 4296 | 1.747355 | CATTCCACTCCCAATGCACTC | 59.253 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
2474 | 4297 | 1.617804 | CCATTCCACTCCCAATGCACT | 60.618 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
2475 | 4298 | 0.819582 | CCATTCCACTCCCAATGCAC | 59.180 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2476 | 4299 | 0.703488 | TCCATTCCACTCCCAATGCA | 59.297 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2477 | 4300 | 1.851304 | TTCCATTCCACTCCCAATGC | 58.149 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2478 | 4301 | 6.736110 | AATTATTCCATTCCACTCCCAATG | 57.264 | 37.500 | 0.00 | 0.00 | 0.00 | 2.82 |
2479 | 4302 | 8.873144 | CATTAATTATTCCATTCCACTCCCAAT | 58.127 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2480 | 4303 | 7.843760 | ACATTAATTATTCCATTCCACTCCCAA | 59.156 | 33.333 | 0.00 | 0.00 | 0.00 | 4.12 |
2481 | 4304 | 7.287466 | CACATTAATTATTCCATTCCACTCCCA | 59.713 | 37.037 | 0.00 | 0.00 | 0.00 | 4.37 |
2482 | 4305 | 7.505585 | TCACATTAATTATTCCATTCCACTCCC | 59.494 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2483 | 4306 | 8.463930 | TCACATTAATTATTCCATTCCACTCC | 57.536 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
2484 | 4307 | 8.078596 | GCTCACATTAATTATTCCATTCCACTC | 58.921 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2485 | 4308 | 7.560991 | TGCTCACATTAATTATTCCATTCCACT | 59.439 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
2486 | 4309 | 7.715657 | TGCTCACATTAATTATTCCATTCCAC | 58.284 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
2487 | 4310 | 7.894753 | TGCTCACATTAATTATTCCATTCCA | 57.105 | 32.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2488 | 4311 | 8.416329 | ACTTGCTCACATTAATTATTCCATTCC | 58.584 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
2489 | 4312 | 9.807649 | AACTTGCTCACATTAATTATTCCATTC | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 2.67 |
2492 | 4315 | 9.461312 | AGTAACTTGCTCACATTAATTATTCCA | 57.539 | 29.630 | 0.00 | 0.00 | 0.00 | 3.53 |
2498 | 4321 | 9.231297 | ACACATAGTAACTTGCTCACATTAATT | 57.769 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2499 | 4322 | 8.792830 | ACACATAGTAACTTGCTCACATTAAT | 57.207 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
2500 | 4323 | 8.094548 | AGACACATAGTAACTTGCTCACATTAA | 58.905 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2501 | 4324 | 7.611770 | AGACACATAGTAACTTGCTCACATTA | 58.388 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
2502 | 4325 | 6.467677 | AGACACATAGTAACTTGCTCACATT | 58.532 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2503 | 4326 | 6.042638 | AGACACATAGTAACTTGCTCACAT | 57.957 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
2504 | 4327 | 5.468540 | AGACACATAGTAACTTGCTCACA | 57.531 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
2505 | 4328 | 5.120830 | CCAAGACACATAGTAACTTGCTCAC | 59.879 | 44.000 | 0.00 | 0.00 | 37.29 | 3.51 |
2506 | 4329 | 5.221641 | ACCAAGACACATAGTAACTTGCTCA | 60.222 | 40.000 | 0.00 | 0.00 | 37.29 | 4.26 |
2507 | 4330 | 5.238583 | ACCAAGACACATAGTAACTTGCTC | 58.761 | 41.667 | 0.00 | 0.00 | 37.29 | 4.26 |
2508 | 4331 | 5.012148 | AGACCAAGACACATAGTAACTTGCT | 59.988 | 40.000 | 0.00 | 0.00 | 37.29 | 3.91 |
2509 | 4332 | 5.238583 | AGACCAAGACACATAGTAACTTGC | 58.761 | 41.667 | 0.00 | 0.00 | 37.29 | 4.01 |
2510 | 4333 | 8.304596 | TCTTAGACCAAGACACATAGTAACTTG | 58.695 | 37.037 | 0.00 | 0.00 | 38.39 | 3.16 |
2511 | 4334 | 8.418597 | TCTTAGACCAAGACACATAGTAACTT | 57.581 | 34.615 | 0.00 | 0.00 | 38.39 | 2.66 |
2512 | 4335 | 7.889073 | TCTCTTAGACCAAGACACATAGTAACT | 59.111 | 37.037 | 0.00 | 0.00 | 38.39 | 2.24 |
2513 | 4336 | 8.053026 | TCTCTTAGACCAAGACACATAGTAAC | 57.947 | 38.462 | 0.00 | 0.00 | 38.39 | 2.50 |
2514 | 4337 | 8.645814 | TTCTCTTAGACCAAGACACATAGTAA | 57.354 | 34.615 | 0.00 | 0.00 | 38.39 | 2.24 |
2515 | 4338 | 7.889073 | ACTTCTCTTAGACCAAGACACATAGTA | 59.111 | 37.037 | 3.85 | 0.00 | 38.39 | 1.82 |
2516 | 4339 | 6.722129 | ACTTCTCTTAGACCAAGACACATAGT | 59.278 | 38.462 | 3.85 | 0.00 | 38.39 | 2.12 |
2517 | 4340 | 7.164230 | ACTTCTCTTAGACCAAGACACATAG | 57.836 | 40.000 | 3.85 | 0.00 | 38.39 | 2.23 |
2518 | 4341 | 7.015292 | ACAACTTCTCTTAGACCAAGACACATA | 59.985 | 37.037 | 3.85 | 0.00 | 38.39 | 2.29 |
2519 | 4342 | 6.183361 | ACAACTTCTCTTAGACCAAGACACAT | 60.183 | 38.462 | 3.85 | 0.00 | 38.39 | 3.21 |
2520 | 4343 | 5.128827 | ACAACTTCTCTTAGACCAAGACACA | 59.871 | 40.000 | 3.85 | 0.00 | 38.39 | 3.72 |
2521 | 4344 | 5.602628 | ACAACTTCTCTTAGACCAAGACAC | 58.397 | 41.667 | 3.85 | 0.00 | 38.39 | 3.67 |
2522 | 4345 | 5.598830 | AGACAACTTCTCTTAGACCAAGACA | 59.401 | 40.000 | 3.85 | 0.00 | 38.39 | 3.41 |
2523 | 4346 | 6.091718 | AGACAACTTCTCTTAGACCAAGAC | 57.908 | 41.667 | 3.85 | 0.00 | 38.39 | 3.01 |
2524 | 4347 | 6.732896 | AAGACAACTTCTCTTAGACCAAGA | 57.267 | 37.500 | 3.85 | 0.00 | 41.10 | 3.02 |
2538 | 4361 | 5.710567 | GGTTTATTAGGCCTGAAGACAACTT | 59.289 | 40.000 | 17.99 | 0.00 | 39.24 | 2.66 |
2539 | 4362 | 5.254115 | GGTTTATTAGGCCTGAAGACAACT | 58.746 | 41.667 | 17.99 | 0.00 | 0.00 | 3.16 |
2540 | 4363 | 4.398358 | GGGTTTATTAGGCCTGAAGACAAC | 59.602 | 45.833 | 17.99 | 10.37 | 0.00 | 3.32 |
2541 | 4364 | 4.595986 | GGGTTTATTAGGCCTGAAGACAA | 58.404 | 43.478 | 17.99 | 0.00 | 0.00 | 3.18 |
2542 | 4365 | 3.370103 | CGGGTTTATTAGGCCTGAAGACA | 60.370 | 47.826 | 17.99 | 0.00 | 0.00 | 3.41 |
2543 | 4366 | 3.203716 | CGGGTTTATTAGGCCTGAAGAC | 58.796 | 50.000 | 17.99 | 7.61 | 0.00 | 3.01 |
2544 | 4367 | 2.171870 | CCGGGTTTATTAGGCCTGAAGA | 59.828 | 50.000 | 17.99 | 0.00 | 0.00 | 2.87 |
2545 | 4368 | 2.171870 | TCCGGGTTTATTAGGCCTGAAG | 59.828 | 50.000 | 17.99 | 0.00 | 0.00 | 3.02 |
2546 | 4369 | 2.092807 | GTCCGGGTTTATTAGGCCTGAA | 60.093 | 50.000 | 17.99 | 6.31 | 0.00 | 3.02 |
2547 | 4370 | 1.487558 | GTCCGGGTTTATTAGGCCTGA | 59.512 | 52.381 | 17.99 | 7.94 | 0.00 | 3.86 |
2548 | 4371 | 1.808891 | CGTCCGGGTTTATTAGGCCTG | 60.809 | 57.143 | 17.99 | 0.00 | 0.00 | 4.85 |
2549 | 4372 | 0.466963 | CGTCCGGGTTTATTAGGCCT | 59.533 | 55.000 | 11.78 | 11.78 | 0.00 | 5.19 |
2550 | 4373 | 0.533531 | CCGTCCGGGTTTATTAGGCC | 60.534 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
2551 | 4374 | 0.465287 | TCCGTCCGGGTTTATTAGGC | 59.535 | 55.000 | 0.00 | 0.00 | 37.00 | 3.93 |
2552 | 4375 | 1.069668 | CCTCCGTCCGGGTTTATTAGG | 59.930 | 57.143 | 0.00 | 0.00 | 37.00 | 2.69 |
2553 | 4376 | 1.069668 | CCCTCCGTCCGGGTTTATTAG | 59.930 | 57.143 | 0.00 | 0.00 | 36.91 | 1.73 |
2554 | 4377 | 1.122227 | CCCTCCGTCCGGGTTTATTA | 58.878 | 55.000 | 0.00 | 0.00 | 36.91 | 0.98 |
2555 | 4378 | 0.618393 | TCCCTCCGTCCGGGTTTATT | 60.618 | 55.000 | 0.00 | 0.00 | 42.56 | 1.40 |
2556 | 4379 | 1.002017 | TCCCTCCGTCCGGGTTTAT | 59.998 | 57.895 | 0.00 | 0.00 | 42.56 | 1.40 |
2557 | 4380 | 1.683365 | CTCCCTCCGTCCGGGTTTA | 60.683 | 63.158 | 0.00 | 0.00 | 42.56 | 2.01 |
2558 | 4381 | 2.445492 | TACTCCCTCCGTCCGGGTTT | 62.445 | 60.000 | 0.00 | 0.00 | 42.56 | 3.27 |
2559 | 4382 | 2.850828 | CTACTCCCTCCGTCCGGGTT | 62.851 | 65.000 | 0.00 | 0.00 | 42.56 | 4.11 |
2560 | 4383 | 3.341629 | TACTCCCTCCGTCCGGGT | 61.342 | 66.667 | 0.00 | 0.00 | 42.56 | 5.28 |
2561 | 4384 | 1.987807 | TACTACTCCCTCCGTCCGGG | 61.988 | 65.000 | 0.00 | 0.00 | 43.38 | 5.73 |
2562 | 4385 | 0.534652 | CTACTACTCCCTCCGTCCGG | 60.535 | 65.000 | 0.00 | 0.00 | 0.00 | 5.14 |
2563 | 4386 | 0.179936 | ACTACTACTCCCTCCGTCCG | 59.820 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2564 | 4387 | 2.437651 | ACTACTACTACTCCCTCCGTCC | 59.562 | 54.545 | 0.00 | 0.00 | 0.00 | 4.79 |
2565 | 4388 | 3.118445 | ACACTACTACTACTCCCTCCGTC | 60.118 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
2566 | 4389 | 2.843113 | ACACTACTACTACTCCCTCCGT | 59.157 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2567 | 4390 | 3.557228 | ACACTACTACTACTCCCTCCG | 57.443 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
2568 | 4391 | 8.435982 | TCTTATTACACTACTACTACTCCCTCC | 58.564 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
2569 | 4392 | 9.492973 | CTCTTATTACACTACTACTACTCCCTC | 57.507 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
2570 | 4393 | 7.938490 | GCTCTTATTACACTACTACTACTCCCT | 59.062 | 40.741 | 0.00 | 0.00 | 0.00 | 4.20 |
2571 | 4394 | 7.938490 | AGCTCTTATTACACTACTACTACTCCC | 59.062 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
2572 | 4395 | 8.907222 | AGCTCTTATTACACTACTACTACTCC | 57.093 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
2573 | 4396 | 9.545105 | TGAGCTCTTATTACACTACTACTACTC | 57.455 | 37.037 | 16.19 | 0.00 | 0.00 | 2.59 |
2574 | 4397 | 9.902684 | TTGAGCTCTTATTACACTACTACTACT | 57.097 | 33.333 | 16.19 | 0.00 | 0.00 | 2.57 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.